HHsearch results for GI: 254780828 and protein with PDBid: 1ryp_C
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3bdm_B* 1z7q_C* 2zcy_B* 1g0u_B 1fnt_C 1vsy_C ...
Probab=99.97 E-value=1.7e-29 Score=202.95 Aligned_cols=175 Identities=18% Similarity=0.142 Sum_probs=146.3
Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCH
Q ss_conf 637179999979979998136545053677445105798159759997313058899999999999998536--656306
Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSS 90 (190)
Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~ 90 (190)
.+|||+|||+++||||||+|+|+++|..+.+++.+||++++++++++ ++|.++|.+.+.+.++.++++++. ....++
T Consensus 29 ~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 107 (244)
T 1ryp_C 29 SHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVA-VAGLTADAEILINTARIHAQNYLKTYNEDIPV 107 (244)
T ss_dssp TTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEE-EECCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 66887899996999999996776777760367542599907982699-94670659999999999999999984999999
Q ss_pred HHHHHHHHHHHH-------HHHCCCE--EEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH
Q ss_conf 799999976112-------2201310--451378-764699805863114132799606423457889852078999899
Q gi|254780828|r 91 VELAKDWRMDKY-------LRNLEAM--ILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE 160 (190)
Q Consensus 91 ~~~~~~~~~~~y-------~~~~~~~--~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e 160 (190)
..+++.+....+ .+++... +.+.|. .+|.+|..|+.|+..+.++.|+|+|+.+|+++|++.|+++|+.+|
T Consensus 108 ~~l~~~l~~~~~~~~~~~~~rP~~v~~lvaG~d~~~gp~Ly~id~~Gs~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~ee 187 (244)
T 1ryp_C 108 EILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDD 187 (244)
T ss_dssp HHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEEEEECCCEEEEEECEEEECCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999999999876412566775278999998089997799966988898538799994889999999755766999999
Q ss_pred ---HHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf ---9999999754011022595699999417
Q gi|254780828|r 161 ---IARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 161 ---la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
++++||..|.+||..+|++++|.+|+.+
T Consensus 188 ai~l~~~al~~~~~~d~~~~~~iev~iv~k~ 218 (244)
T 1ryp_C 188 AIELALKTLSKTTDSSALTYDRLEFATIRKG 218 (244)
T ss_dssp HHHHHHHHHHHHCSSSSCCGGGEEEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEECC
T ss_conf 9999999999997235888884699999868