HHsearch results for GI: 254780828 and protein with PDBid: 1ryp_M
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 1g0u_L 2zcy_L* ...
Probab=100.00 E-value=7.3e-34 Score=230.22 Aligned_cols=181 Identities=15% Similarity=0.105 Sum_probs=152.6
Q ss_pred CCCCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 778177637179999979979998136545053677445105798159759997313058899999999999998536--
Q gi|254780828|r 7 KHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN-- 84 (190)
Q Consensus 7 ~~~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~-- 84 (190)
+|+||.+||||+|||+++||||||||+|+|.|+++.+++.+|||+++++++++ ++|..+|++.+.+.++.++++++.
T Consensus 1 ~f~py~~nGtTivgi~~~dgVviaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~-~sG~~aD~~~l~~~~~~~~~~~~~~~ 79 (222)
T 1ryp_M 1 QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMS-ANGFAADGDALVKRFKNSVKWYHFDH 79 (222)
T ss_dssp CCCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEE-EEESHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEECCCCCCCEEEECCCEEEE-CCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 98874478817999997999999987865668763268755289926989999-25273478999999999986678751
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHCCC---E--EEECCCC-CCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC----
Q ss_conf -656306799999976112220131---0--4513787-6469980586311413279960642345788985207----
Q gi|254780828|r 85 -QLLRSSVELAKDWRMDKYLRNLEA---M--ILIADKT-ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---- 153 (190)
Q Consensus 85 -~~~~~~~~~~~~~~~~~y~~~~~~---~--~~~~~~~-~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~---- 153 (190)
.....+...+.......+..+..| . +.+.|.. +|.++..|+.|+..+.++.|+|||+.+|+++||+.|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~lvaG~d~~g~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ 159 (222)
T 1ryp_M 80 NDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQ 159 (222)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCC
T ss_conf 78888799999988887775148863024678898078987999987998589834687446558899999976312434
Q ss_pred -------------CCCCH---HHHHHHHHHHHHCCCEEECCCEEEEEEECC
Q ss_conf -------------89998---999999999754011022595699999417
Q gi|254780828|r 154 -------------TQNSA---EEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190)
Q Consensus 154 -------------~~~sa---~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190)
++||. .+++++||..|.+||++||+++.|.+|+.+
T Consensus 160 ~~~~~~~~~~~~~~~~t~eea~~l~~~al~~~~~rd~~sg~~v~v~vi~kd 210 (222)
T 1ryp_M 160 YEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKD 210 (222)
T ss_dssp BCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT
T ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
T ss_conf 575410111101224899999999999999999860768997799999489