>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R

Probab=100.00 E-value=2.1e-31 Score=214.89 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=147.0 Q ss_pred CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC-- Q ss_conf 817763717999997997999813654505367744510579815975999731305889999999999999853665-- Q gi|254780828|r 9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQL-- 86 (190) Q Consensus 9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~-- 86 (190) +|+.. |||+|||+++||||||||+|+|.|.++.+++.+||++|++|++++ ++|.++|.+.+.+.++.+..+++... T Consensus 3 ~~i~t-GtTvvgi~~~dgVvlaaD~r~s~g~l~~~~~~~KI~~I~~~i~~~-~aG~~aD~~~l~~~l~~~~~~~~~~~~~ 80 (233) T 1ryp_N 3 QPIVT-GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVG-ISGDISDMQHIERLLKDLVTENAYDNPL 80 (233) T ss_dssp CCCEE-ECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEE-EEEEHHHHHHHHHHHHHHHHHHHTTCTT T ss_pred CCCCC-CCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-ECCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 87166-635999998999999984786668664047755389966967999-6267078999999999999999874277 Q ss_pred -----CCCHHHHHHHHHHHHHH-----HHCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC Q ss_conf -----63067999999761122-----20131--0451378-76469980586311413279960642345788985207 Q gi|254780828|r 87 -----LRSSVELAKDWRMDKYL-----RNLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS 153 (190) Q Consensus 87 -----~~~~~~~~~~~~~~~y~-----~~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~ 153 (190) ...+..+++.+....|. +++.. .+.+.|. +.+.++..|+.|...+.++.|+|||+++|+++||+.|+ T Consensus 81 ~~~~~~l~~~~~a~~l~~~~y~~~~~~~P~~v~~li~G~d~~g~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~ 160 (233) T 1ryp_N 81 ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD 160 (233) T ss_dssp TTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCS T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEECCEEEECCCHHHHHHHHHHHHH T ss_conf 78763027999999999888765433477624899999807998599997797778884789989867999999999853 Q ss_pred -----CCCC---HHHHHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf -----8999---8999999999754011022595699999417 Q gi|254780828|r 154 -----TQNS---AEEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 154 -----~~~s---a~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) ++|+ |.+++++||+.|.+||+++|+++++.+|+-+ T Consensus 161 ~~~~~~~ms~eea~~l~~~al~~~~~rD~~sg~~i~v~vitkd 203 (233) T 1ryp_N 161 RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKN 203 (233) T ss_dssp SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC T ss_conf 1278889899999999999999999645668996899999899

HHsearch results for GI: 254780828 and protein with PDBid: 1ryp_N