HHsearch results for GI: 254780828 and protein with PDBid: 1yar_A
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase/hydrolase activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.96 E-value=2.1e-27 Score=189.76 Aligned_cols=174 Identities=16% Similarity=0.084 Sum_probs=141.3
Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCH
Q ss_conf 637179999979979998136545053677445105798159759997313058899999999999998536--656306
Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSS 90 (190)
Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~ 90 (190)
-+|||+|||+++||||||+|+|.+.+ ++..++.+||++|+++++++ .+|.++|.+.+.+.++.++.+++. ....++
T Consensus 32 ~~G~t~Igi~~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (233)
T 1yar_A 32 KKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAV-TSGLVADARVLVDFARISAQQEKVTYGSLVNI 109 (233)
T ss_dssp TTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEE-EEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HCCCCEEEEEECCEEEEEEECCCCCC-CCCCCCCCEEEEEECCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 75876899996999999996676666-61567665079960652578-52150458999999999999999870996408
Q ss_pred HHHHHHHHHHH----H---HHHCC--CEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH--
Q ss_conf 79999997611----2---22013--1045137876469980586311413279960642345788985207899989--
Q gi|254780828|r 91 VELAKDWRMDK----Y---LRNLE--AMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE-- 159 (190)
Q Consensus 91 ~~~~~~~~~~~----y---~~~~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~-- 159 (190)
...++.+.... + .+++. ..+.+.|.++|++|..|+.|+..+.++.|+|+|+++|.++|++.|+++|+.+
T Consensus 110 ~~~~~~l~~~~~~~~~~~~~rP~~~~~iiaG~d~~gp~Ly~id~~Gs~~~~~~~a~G~gs~~~~~~L~~~~~~~ms~~ea 189 (233)
T 1yar_A 110 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEA 189 (233)
T ss_dssp HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999999998601466786368999997389980799647325774028998886699999998761237888999
Q ss_pred -HHHHHHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf -999999997540110225956999994178
Q gi|254780828|r 160 -EIARKAMSIAADICVYTNHNIVLETLKVGD 189 (190)
Q Consensus 160 -ela~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190)
+++++||..+.++|. +.++++|.+|+.++
T Consensus 190 ~~l~~~~L~~~~~~~~-~~~~iei~~i~~~~ 219 (233)
T 1yar_A 190 VTLGIKALKSSLEEGE-ELKAPEIASITVGN 219 (233)
T ss_dssp HHHHHHHHHHTSCSSC-CCCCCEEEEEETTS
T ss_pred HHHHHHHHHHHHHCCC-CCCCEEEEEEECCC
T ss_conf 9999999999985467-88971999999299