HHsearch results for GI: 254780828 and protein with PDBid: 1yar_A

>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase/hydrolase activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=99.96  E-value=2.1e-27  Score=189.76  Aligned_cols=174  Identities=16%  Similarity=0.084  Sum_probs=141.3

Q ss_pred             ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCH
Q ss_conf             637179999979979998136545053677445105798159759997313058899999999999998536--656306
Q gi|254780828|r   13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSS   90 (190)
Q Consensus        13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~   90 (190)
                      -+|||+|||+++||||||+|+|.+.+ ++..++.+||++|+++++++ .+|.++|.+.+.+.++.++.+++.  ....++
T Consensus        32 ~~G~t~Igi~~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~  109 (233)
T 1yar_A           32 KKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAV-TSGLVADARVLVDFARISAQQEKVTYGSLVNI  109 (233)
T ss_dssp             TTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEE-EEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HCCCCEEEEEECCEEEEEEECCCCCC-CCCCCCCCEEEEEECCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf             75876899996999999996676666-61567665079960652578-52150458999999999999999870996408


Q ss_pred             HHHHHHHHHHH----H---HHHCC--CEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH--
Q ss_conf             79999997611----2---22013--1045137876469980586311413279960642345788985207899989--
Q gi|254780828|r   91 VELAKDWRMDK----Y---LRNLE--AMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE--  159 (190)
Q Consensus        91 ~~~~~~~~~~~----y---~~~~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~--  159 (190)
                      ...++.+....    +   .+++.  ..+.+.|.++|++|..|+.|+..+.++.|+|+|+++|.++|++.|+++|+.+  
T Consensus       110 ~~~~~~l~~~~~~~~~~~~~rP~~~~~iiaG~d~~gp~Ly~id~~Gs~~~~~~~a~G~gs~~~~~~L~~~~~~~ms~~ea  189 (233)
T 1yar_A          110 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEA  189 (233)
T ss_dssp             HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf             99999999999998601466786368999997389980799647325774028998886699999998761237888999


Q ss_pred             -HHHHHHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf             -999999997540110225956999994178
Q gi|254780828|r  160 -EIARKAMSIAADICVYTNHNIVLETLKVGD  189 (190)
Q Consensus       160 -ela~~Al~~A~erDvyTgd~i~i~~i~~~~  189 (190)
                       +++++||..+.++|. +.++++|.+|+.++
T Consensus       190 ~~l~~~~L~~~~~~~~-~~~~iei~~i~~~~  219 (233)
T 1yar_A          190 VTLGIKALKSSLEEGE-ELKAPEIASITVGN  219 (233)
T ss_dssp             HHHHHHHHHHTSCSSC-CCCCCEEEEEETTS
T ss_pred             HHHHHHHHHHHHHCCC-CCCCEEEEEEECCC
T ss_conf             9999999999985467-88971999999299