HHsearch results for GI: 254780828 and protein with PDBid: 3bdm_F
>3bdm_F Proteasome component C1; ubiquitin, proteolysis, pathogen, virulence factor, cytoplasm, hydrolase, nucleus, protease; HET: GDT; 2.70A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_G* 2zcy_F* 1z7q_G
Probab=99.95 E-value=3.7e-26 Score=182.06 Aligned_cols=174 Identities=14% Similarity=0.050 Sum_probs=142.6
Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHH
Q ss_conf 3717999997997999813654505367744510579815975999731305889999999999999853--66563067
Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSV 91 (190)
Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (190)
+|||+|||+++||||||+|+|++++.++ .++.+||++|++|++++ .+|..+|++.+.+.++.++..++ .....++.
T Consensus 32 ~G~t~Vgik~kdGVVlaadkr~~s~l~~-~~~~~KI~~I~~~i~~a-~sG~~aD~~~l~~~~r~e~~~~~~~~~~~i~~~ 109 (287)
T 3bdm_F 32 NGTTSIGIKCNDGVVFAVEKLITSKLLV-PQKNVKIQVVDRHIGCV-YSGLIPDGRHLVNRGREEAASFKKLYKTPIPIP 109 (287)
T ss_dssp TSCCEEEEEETTEEEEEEEEEECCTTBC-TTTSCCCEEETTTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCSCCCHH
T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCCC-CCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 5987899994999999993665666610-03333289977980799-987568899999999999999899709989889
Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHH---HHCCCCCHH
Q ss_conf 99999976112-------220131--045137876469980586311413279960642345788985---207899989
Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARA---LMSTQNSAE 159 (190)
Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~---~y~~~~sa~ 159 (190)
.+++.+....+ .+++.. .+.+.|.++|.+|..||.|+..+..+.|+|+|+++|+++||+ .|+++|+.+
T Consensus 110 ~la~~l~~~~~~~t~~~~~RPfgvs~liaG~D~~gp~Ly~iDpsG~~~~~~~~AiG~gs~~a~~~LEk~~~~~~~~ms~e 189 (287)
T 3bdm_F 110 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAR 189 (287)
T ss_dssp HHHHHHHHHHHHTTSCTTBCCCSEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHTCTTCCCHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEECCCEEEEEECEEEECCCHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99999999998853203457658999999972998889998587558722869989888999999986665278998999
Q ss_pred H---HHHHHHHHHHCCCEEECCCEEEEEEECCC
Q ss_conf 9---99999997540110225956999994178
Q gi|254780828|r 160 E---IARKAMSIAADICVYTNHNIVLETLKVGD 189 (190)
Q Consensus 160 e---la~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190)
| ++.++|..+.+.+.-+..++++.+|..++
T Consensus 190 Eai~la~kaL~~~~d~~~~~~~~iev~~i~~~~ 222 (287)
T 3bdm_F 190 EAVKQAAKIIYLAHEDNKEKDFELEISWCSLSE 222 (287)
T ss_dssp HHHHHHHHHHHHHGGGSTTSEEEEEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEC
T ss_conf 999999999999861336877627999999606