Query gi|254780828|ref|YP_003065241.1| ATP-dependent protease peptidase subunit [Candidatus Liberibacter asiaticus str. psy62] Match_columns 190 No_of_seqs 110 out of 1354 Neff 8.0 Searched_HMMs 23785 Date Tue May 31 15:09:27 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780828.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2z3b_A ATP-dependent protease 100.0 1.1E-39 4.5E-44 266.7 14.0 175 12-186 2-180 (180) 2 1m4y_A ATP-dependent protease 100.0 9.2E-39 3.9E-43 260.8 17.0 170 16-185 1-171 (171) 3 1g3k_A ATP-dependent protease 100.0 6.8E-38 2.9E-42 255.4 17.0 172 16-187 1-174 (174) 4 1iru_M 20S proteasome; cell cy 100.0 1.2E-34 5.1E-39 235.1 21.0 181 7-188 1-201 (213) 5 1ryp_M 20S proteasome; multica 100.0 7.3E-34 3.1E-38 230.2 20.3 181 7-188 1-210 (222) 6 2jay_A Proteasome; hydrolase; 100.0 2.6E-34 1.1E-38 233.0 17.1 169 13-182 55-244 (291) 7 1q5r_H Proteasome beta-type su 100.0 8.3E-34 3.5E-38 229.9 18.1 175 13-188 63-265 (294) 8 1ryp_H 20S proteasome; multica 100.0 5.5E-33 2.3E-37 224.7 19.1 174 14-188 8-190 (205) 9 1iru_I 20S proteasome; cell cy 100.0 5.9E-33 2.5E-37 224.5 18.3 172 16-188 1-181 (234) 10 1iru_H 20S proteasome; cell cy 100.0 1.4E-32 6.1E-37 222.1 20.0 172 16-188 1-182 (205) 11 1ryp_J 20S proteasome; multica 100.0 2.4E-32 1E-36 220.7 20.5 179 9-189 2-193 (204) 12 1ryp_I 20S proteasome; multica 100.0 2.5E-32 1E-36 220.6 20.1 173 16-189 1-182 (222) 13 1iru_L 20S proteasome; cell cy 100.0 2.3E-32 9.8E-37 220.8 19.9 172 16-188 1-182 (204) 14 1g0u_M Proteasome component PR 100.0 2E-32 8.3E-37 221.3 18.8 181 6-188 33-236 (266) 15 1iru_J 20S proteasome; cell cy 100.0 7E-32 2.9E-36 217.8 20.7 179 9-188 2-193 (205) 16 1iru_N 20S proteasome; cell cy 100.0 4.9E-32 2.1E-36 218.8 18.3 178 9-188 3-195 (219) 17 1ryp_L 20S proteasome; multica 100.0 9.2E-32 3.9E-36 217.1 19.5 172 16-188 1-183 (212) 18 1yar_H Proteasome beta subunit 100.0 1.5E-31 6.4E-36 215.7 20.0 175 14-189 7-190 (217) 19 1ryp_N 20S proteasome; multica 100.0 2.1E-31 8.6E-36 214.9 18.9 178 9-188 3-203 (233) 20 1q5q_H Proteasome beta-type su 100.0 4.2E-31 1.8E-35 213.0 19.2 171 16-187 1-199 (235) 21 1j2q_H Proteasome beta subunit 100.0 1.3E-30 5.5E-35 209.9 19.8 172 16-188 1-183 (202) 22 3h4p_a Proteasome subunit beta 100.0 9.8E-30 4.1E-34 204.4 19.1 173 15-188 1-185 (219) 23 1iru_K 20S proteasome; cell cy 100.0 4.9E-30 2.1E-34 206.3 17.6 173 15-188 1-186 (201) 24 1iru_C 20S proteasome; cell cy 100.0 7.2E-30 3E-34 205.2 18.1 175 13-188 29-219 (261) 25 1ryp_C 20S proteasome; multica 100.0 1.7E-29 7E-34 203.0 19.0 175 13-188 29-218 (244) 26 1ryp_K 20S proteasome; multica 100.0 1.9E-29 7.9E-34 202.6 18.7 173 15-188 1-187 (198) 27 3h4p_A Proteasome subunit alph 100.0 2.9E-28 1.2E-32 195.2 16.2 171 14-188 37-221 (264) 28 1iru_B 20S proteasome; cell cy 100.0 1E-27 4.2E-32 191.8 18.7 171 14-187 30-214 (233) 29 1yar_A Proteasome alpha subuni 100.0 2.1E-27 9E-32 189.8 19.9 174 13-189 32-219 (233) 30 1ryp_B 20S proteasome; multica 100.0 1.3E-27 5.4E-32 191.2 17.7 172 14-188 30-217 (250) 31 1ryp_E 20S proteasome; multica 100.0 2.7E-27 1.1E-31 189.2 18.3 173 14-189 25-218 (242) 32 1j2p_A Alpha-ring, proteasome 100.0 5.9E-27 2.5E-31 187.0 19.0 173 14-189 33-218 (246) 33 1iru_E 20S proteasome; cell cy 100.0 5.2E-27 2.2E-31 187.3 17.9 173 14-189 33-224 (241) 34 1ryp_G 20S proteasome; multica 100.0 1.1E-26 4.5E-31 185.4 18.7 173 14-188 29-218 (244) 35 1iru_G 20S proteasome; cell cy 100.0 4.4E-27 1.8E-31 187.8 16.4 174 14-189 32-220 (254) 36 1ryp_D 20S proteasome; multica 99.9 1.6E-26 6.8E-31 184.3 17.2 172 14-189 27-217 (241) 37 3bdm_F Proteasome component C1 99.9 3.7E-26 1.5E-30 182.1 17.8 174 14-189 32-222 (287) 38 1iru_F 20S proteasome; cell cy 99.9 1.3E-26 5.3E-31 185.0 15.4 171 14-188 31-218 (263) 39 1ryp_A 20S proteasome; multica 99.9 2.5E-26 1.1E-30 183.0 16.8 173 13-188 28-222 (243) 40 3mi0_A Proteasome subunit alph 99.9 8.1E-26 3.4E-30 179.9 19.1 166 14-188 26-216 (248) 41 1iru_D 20S proteasome; cell cy 99.9 5.2E-26 2.2E-30 181.1 17.3 173 14-188 28-214 (248) 42 1iru_A 20S proteasome; cell cy 99.9 1E-25 4.3E-30 179.2 17.5 173 13-188 34-223 (246) 43 1ryp_F 20S proteasome; multica 99.9 2.7E-25 1.2E-29 176.6 16.9 171 14-188 30-218 (233) 44 1q5q_A Proteasome alpha-type s 99.9 2.1E-24 8.7E-29 171.1 17.4 166 14-188 26-214 (259) 45 1cuk_A RUVA protein; DNA repai 34.2 20 0.00086 14.8 3.5 35 135-169 168-202 (203) 46 2pk0_A Serine/threonine protei 24.9 29 0.0012 13.8 5.2 36 153-190 213-248 (250) 47 3bb7_A Interpain A; cysteine p 20.5 29 0.0012 13.9 1.1 18 20-37 17-34 (321) 48 1dki_A Pyrogenic exotoxin B zy 20.0 37 0.0015 13.2 1.7 20 18-37 53-72 (371) No 1 >2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* Probab=100.00 E-value=1.1e-39 Score=266.67 Aligned_cols=175 Identities=51% Similarity=0.843 Sum_probs=156.6 Q ss_pred EECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEE-EEECCHHHHHHHHHHHHHHHHHHHCCCCCCCH Q ss_conf 76371799999799799981365450536774451057981597599-97313058899999999999998536656306 Q gi|254780828|r 12 KMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNII-AGFAGSSADAFTLLERLEKKLEQYPNQLLRSS 90 (190) Q Consensus 12 ~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~-~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~ 90 (190) ++||||||||+|+||||||||||+|+|+++.+|+.+|++++.++.++ ++.++...+.+.+.+....+.++++....... T Consensus 2 ~~~GTTivavk~~~GVvlAaDtR~s~G~~i~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (180) T 2z3b_A 2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAA 81 (180) T ss_dssp CBCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTTTCHHHHH T ss_pred CCCCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 97762899999999999998984427764897362379997169869953624678999999999999987515420149 Q ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCC---CHHHHHHHHHH Q ss_conf 799999976112220131045137876469980586311413279960642345788985207899---98999999999 Q gi|254780828|r 91 VELAKDWRMDKYLRNLEAMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQN---SAEEIARKAMS 167 (190) Q Consensus 91 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~---sa~ela~~Al~ 167 (190) ...++.+...+|.+++.+.+......+++++..++.+..++++|+|+|||+++|+|+||..|+|+| +|+||+++||+ T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~g~L~~~y~~~~~~~eA~~la~~Al~ 161 (180) T 2z3b_A 82 VELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALE 161 (180) T ss_dssp HHHHHHHHHCTTGGGCCCCEEEECSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCEEECCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 99999998866654125516787326753743785102046648984435799999999873558986679999999999 Q ss_pred HHHCCCEEECCCEEEEEEE Q ss_conf 7540110225956999994 Q gi|254780828|r 168 IAADICVYTNHNIVLETLK 186 (190) Q Consensus 168 ~A~erDvyTgd~i~i~~i~ 186 (190) +|+|||||||||++|++|| T Consensus 162 ~Aae~diyT~~~~~v~~~~ 180 (180) T 2z3b_A 162 TAGEICVYTNDQIILEELE 180 (180) T ss_dssp HHHHHCTTCCSCCEEEEEC T ss_pred HHHHHCEECCCCEEEEEEC T ss_conf 9875228809958999839 No 2 >1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Probab=100.00 E-value=9.2e-39 Score=260.84 Aligned_cols=170 Identities=57% Similarity=0.960 Sum_probs=150.0 Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853665630679999 Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAK 95 (190) Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (190) ||||||+|+||||||||||+|+|++|.+|+++||+++++++++++.++.+++++.+......+.+++.......+...++ T Consensus 1 TTivai~~~dgVvlAaDtr~S~G~~i~~r~~~Ki~~i~~~~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (171) T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAK 80 (171) T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEEECCCCEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 95999998999999988875148878917988888838994999974624458999999999887640455201599999 Q ss_pred HHHHHHHHHHCCCEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCE Q ss_conf 9976112220131045137876469980586311413279960642345788985207-899989999999997540110 Q gi|254780828|r 96 DWRMDKYLRNLEAMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS-TQNSAEEIARKAMSIAADICV 174 (190) Q Consensus 96 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~-~~~sa~ela~~Al~~A~erDv 174 (190) .+....+.+++...+...+..+++++..++.+..++++|+|+|||+.||+|+|+.+|+ ++++|+||+++||++|+|||| T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~a~GSG~~~a~g~l~~~~~~~~~~A~ela~~Ai~~Aae~dv 160 (171) T 1m4y_A 81 DWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIAGEICI 160 (171) T ss_dssp HHHHCTTGGGCCCEEEEECSSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCT T ss_pred HHHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCE T ss_conf 99986666543223320146653388438965687378999964789999999960647899999999999999760154 Q ss_pred EECCCEEEEEE Q ss_conf 22595699999 Q gi|254780828|r 175 YTNHNIVLETL 185 (190) Q Consensus 175 yTgd~i~i~~i 185 (190) ||||+|+|+|| T Consensus 161 yTgd~v~i~~i 171 (171) T 1m4y_A 161 YTNQNIVIEEV 171 (171) T ss_dssp TCCSCCEEEEC T ss_pred ECCCCEEEEEC T ss_conf 62996899979 No 3 >1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Probab=100.00 E-value=6.8e-38 Score=255.43 Aligned_cols=172 Identities=58% Similarity=0.863 Sum_probs=154.3 Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853665630679999 Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRSSVELAK 95 (190) Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (190) ||||||+|+||||||||||+|+|++|.+|+++||++++++.++++.+|.+++++.+.+.+..++++++..........++ T Consensus 1 TTivgi~~~~GVVlAADtR~T~G~~i~~~~~~Ki~~i~~~~~~~~~~g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (174) T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAK 80 (174) T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCEEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 95999998999999989874058776827621789945982999736158889999999886655414863035999999 Q ss_pred HHHHHHHHHHCCCEEEECC-CCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCC Q ss_conf 9976112220131045137-876469980586311413279960642345788985207-89998999999999754011 Q gi|254780828|r 96 DWRMDKYLRNLEAMILIAD-KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS-TQNSAEEIARKAMSIAADIC 173 (190) Q Consensus 96 ~~~~~~y~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~-~~~sa~ela~~Al~~A~erD 173 (190) ......|..+....+...+ ...++.+..++.+..++.+|+|+|||+.||+|+|+..|+ ++++|+||+++||++|+||| T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~GSGs~~A~g~~~~~~~~~~~eA~ela~~Ai~~A~~~d 160 (174) T 1g3k_A 81 DWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDIC 160 (174) T ss_dssp HHHHSTTGGGCCCEEEEECSSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCEEECCCCEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC T ss_conf 99975202001023554025676301478761223588889966709999999998620699899999999999976016 Q ss_pred EEECCCEEEEEEEC Q ss_conf 02259569999941 Q gi|254780828|r 174 VYTNHNIVLETLKV 187 (190) Q Consensus 174 vyTgd~i~i~~i~~ 187 (190) |||||||+|++|+. T Consensus 161 v~T~~~~~i~~~~~ 174 (174) T 1g3k_A 161 VFTNTNFTIEELPN 174 (174) T ss_dssp TTCCSCCEEEEEC- T ss_pred EECCCCEEEEEECC T ss_conf 77199689999069 No 4 >1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=100.00 E-value=1.2e-34 Score=235.08 Aligned_cols=181 Identities=18% Similarity=0.178 Sum_probs=155.9 Q ss_pred CCCCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC-- Q ss_conf 778177637179999979979998136545053677445105798159759997313058899999999999998536-- Q gi|254780828|r 7 KHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN-- 84 (190) Q Consensus 7 ~~~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~-- 84 (190) ||+||.+||||+|||+++||||||||+|+|.|.++.+++.+||++|++|++++ .+|.++|++.+.+.++.++++++. T Consensus 1 ~f~py~~nG~Tivgi~~~dgVvlaaD~r~~~~~~~~~~~~~Ki~~I~~~i~~~-~sG~~~D~~~l~~~l~~~~~~~~~~~ 79 (213) T 1iru_M 1 RFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIG-CSGFHGDCLTLTKIIEARLKMYKHSN 79 (213) T ss_dssp CCCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHC T ss_conf 98886578807999997999999987875558766638765299957987999-40657999999999999988889870 Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCC-----EEEECCCC-CCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHH------ Q ss_conf 656306799999976112220131-----04513787-646998058631141327996064234578898520------ Q gi|254780828|r 85 QLLRSSVELAKDWRMDKYLRNLEA-----MILIADKT-ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALM------ 152 (190) Q Consensus 85 ~~~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~-~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y------ 152 (190) ....++..+++.++...|.++..| .+.+.|.. +|.+|..|+.|+..+..|.|+|||+.+|+++||..| T Consensus 80 ~~~~~~~~la~~ls~~~~~~~~~p~~v~~lvaG~d~~g~p~ly~iD~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~ 159 (213) T 1iru_M 80 NKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQ 159 (213) T ss_dssp SSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCS T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHEEEEEEEECCCCCCEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCC T ss_conf 99676269999999999862787320011477770689965899858853888226557845999999999751523212 Q ss_pred ---CCCCC---HHHHHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf ---78999---8999999999754011022595699999417 Q gi|254780828|r 153 ---STQNS---AEEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 153 ---~~~~s---a~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) +++|+ |.+++++||..|.+||+.||++++|.+|+.+ T Consensus 160 ~~~~~~~~~eea~~l~~~al~~~~~rd~~sg~~~~v~vi~k~ 201 (213) T 1iru_M 160 NVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKE 201 (213) T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETT T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC T ss_conf 334689999999999999999999757778990899999389 No 5 >1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 1g0u_L 2zcy_L* ... Probab=100.00 E-value=7.3e-34 Score=230.22 Aligned_cols=181 Identities=15% Similarity=0.105 Sum_probs=152.6 Q ss_pred CCCCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC-- Q ss_conf 778177637179999979979998136545053677445105798159759997313058899999999999998536-- Q gi|254780828|r 7 KHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN-- 84 (190) Q Consensus 7 ~~~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~-- 84 (190) +|+||.+||||+|||+++||||||||+|+|.|+++.+++.+|||+++++++++ ++|..+|++.+.+.++.++++++. T Consensus 1 ~f~py~~nGtTivgi~~~dgVviaaD~r~s~g~~i~~~~~~KI~~i~~~i~~~-~sG~~aD~~~l~~~~~~~~~~~~~~~ 79 (222) T 1ryp_M 1 QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMS-ANGFAADGDALVKRFKNSVKWYHFDH 79 (222) T ss_dssp CCCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEE-EEESHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCEECCCCCCCEEEECCCEEEE-CCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 98874478817999997999999987865668763268755289926989999-25273478999999999986678751 Q ss_pred -CCCCCHHHHHHHHHHHHHHHHCCC---E--EEECCCC-CCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC---- Q ss_conf -656306799999976112220131---0--4513787-6469980586311413279960642345788985207---- Q gi|254780828|r 85 -QLLRSSVELAKDWRMDKYLRNLEA---M--ILIADKT-ITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS---- 153 (190) Q Consensus 85 -~~~~~~~~~~~~~~~~~y~~~~~~---~--~~~~~~~-~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~---- 153 (190) .....+...+.......+..+..| . +.+.|.. +|.++..|+.|+..+.++.|+|||+.+|+++||+.|+ T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~lvaG~d~~g~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ 159 (222) T 1ryp_M 80 NDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQ 159 (222) T ss_dssp TTCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTC T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCC T ss_conf 78888799999988887775148863024678898078987999987998589834687446558899999976312434 Q ss_pred -------------CCCCH---HHHHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf -------------89998---999999999754011022595699999417 Q gi|254780828|r 154 -------------TQNSA---EEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 154 -------------~~~sa---~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) ++||. .+++++||..|.+||++||+++.|.+|+.+ T Consensus 160 ~~~~~~~~~~~~~~~~t~eea~~l~~~al~~~~~rd~~sg~~v~v~vi~kd 210 (222) T 1ryp_M 160 YEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKD 210 (222) T ss_dssp BCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT T ss_pred CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC T ss_conf 575410111101224899999999999999999860768997799999489 No 6 >2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Probab=100.00 E-value=2.6e-34 Score=233.04 Aligned_cols=169 Identities=24% Similarity=0.234 Sum_probs=136.6 Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC--H Q ss_conf 63717999997997999813654505367744510579815975999731305889999999999999853665630--6 Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRS--S 90 (190) Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~--~ 90 (190) -||||||||+|+||||||+|+|+|+|++|.+|+++||+++++++++ +++|.++|++.+.+.++.++++++...... + T Consensus 55 ~hGTTivai~~~dGVVlAaD~R~T~g~~i~~~~~~KI~~id~~i~~-~~aG~~aD~~~l~~~l~~e~~~y~~~~~~~~s~ 133 (291) T 2jay_A 55 PHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT-GIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133 (291) T ss_dssp ---CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEE-EEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH T ss_pred CCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEECCCCEEE-EECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 9853699999899999998887677875543775638992897899-955768999999999998888888732888878 Q ss_pred HHHHHHHHHHH------HHHHCCC--EEEECC------CCCCEEEEECCCCC--EECCCEEEEECCHHHHHHHHHHHHCC Q ss_conf 79999997611------2220131--045137------87646998058631--14132799606423457889852078 Q gi|254780828|r 91 VELAKDWRMDK------YLRNLEA--MILIAD------KTITLVITGMGDVL--EPENGVMAIGSGGSYALSAARALMST 154 (190) Q Consensus 91 ~~~~~~~~~~~------y~~~~~~--~~~~~~------~~~~~~~~~d~~g~--~~~~~~~a~GSGs~~A~g~Le~~y~~ 154 (190) ...++.+.... +.+++.. .+.+.| ..++.+|+.|+.|. .++.+|+|+|||+.+|+++||+.|++ T Consensus 134 ~~~a~~la~~~~~~~~~~~~p~~v~~liaG~D~~g~~~~~~~~Ly~~D~~G~~~~~~~~~~AiGsGs~~A~~~Lek~y~~ 213 (291) T 2jay_A 134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQ 213 (291) T ss_dssp HHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGG T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCEEECCCCEEEECCCHHHHHHHHHHHCCC T ss_conf 99999999999998874248850478875324667666888608999489973641599899816789999999975237 Q ss_pred CCCHH---HHHHHHHHHHHCCCEEECCCEEE Q ss_conf 99989---99999999754011022595699 Q gi|254780828|r 155 QNSAE---EIARKAMSIAADICVYTNHNIVL 182 (190) Q Consensus 155 ~~sa~---ela~~Al~~A~erDvyTgd~i~i 182 (190) +|+.+ +++++||..|++||.+||+...+ T Consensus 214 ~ms~eeA~~la~~aL~~A~~rD~~SGg~~~~ 244 (291) T 2jay_A 214 VTDGDSGLRVAVEALYDAADDDSATGGPDLV 244 (291) T ss_dssp CCSHHHHHHHHHHHHHHC------------- T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 9999999999999999998633557995100 No 7 >1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Probab=100.00 E-value=8.3e-34 Score=229.85 Aligned_cols=175 Identities=21% Similarity=0.167 Sum_probs=140.9 Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCC--CCH Q ss_conf 637179999979979998136545053677445105798159759997313058899999999999998536656--306 Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLL--RSS 90 (190) Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~--~~~ 90 (190) .||||||||+|+||||||+|+|+|+|++|.+++++||++++++++++ ++|.++|++.+.+.++.++++++.... .++ T Consensus 63 ~hGTTiVai~~~dGVviAaD~r~t~g~~i~~~~~~KI~~i~d~i~i~-~aG~~aD~~~l~~~l~~e~~~y~~~~g~~~s~ 141 (294) T 1q5r_H 63 PHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAG-IAGTAGIAIELVRLFAVELEHYEKIEGVPLTF 141 (294) T ss_dssp CBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEE-EEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH T ss_pred CCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 98554999998999999988865678765358765399968988999-85568999999999999888888760998668 Q ss_pred HHHHHHHHHHHHH------HHCC--CEEEECC------CCCCEEEEECCCCCEE--CCCEEEEECCHHHHHHHHHHHHCC Q ss_conf 7999999761122------2013--1045137------8764699805863114--132799606423457889852078 Q gi|254780828|r 91 VELAKDWRMDKYL------RNLE--AMILIAD------KTITLVITGMGDVLEP--ENGVMAIGSGGSYALSAARALMST 154 (190) Q Consensus 91 ~~~~~~~~~~~y~------~~~~--~~~~~~~------~~~~~~~~~d~~g~~~--~~~~~a~GSGs~~A~g~Le~~y~~ 154 (190) ...++.+....+. +++. +.+.+.| ..++.+|.+|+.|+.. ..+|+|+|||+.+|+++||+.|++ T Consensus 142 ~~~a~~la~~l~~~~~~~~~~~~v~~l~aG~d~~g~d~~~~g~L~~~D~~G~~~~~~~~~~AiGsGs~~A~~~Lek~~~~ 221 (294) T 1q5r_H 142 DGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP 221 (294) T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCS T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEECEEEEEECCCCCCCCCCEEEEEECCCCEEEECCCEEEEECCHHHHHHHHHHHCCC T ss_conf 89999999999752343567744011067884247767788659999547987886257689847899999999875326 Q ss_pred CCCHHH---HHHHHHHHHHCCCEEECCC-------EEEEEEECC Q ss_conf 999899---9999999754011022595-------699999417 Q gi|254780828|r 155 QNSAEE---IARKAMSIAADICVYTNHN-------IVLETLKVG 188 (190) Q Consensus 155 ~~sa~e---la~~Al~~A~erDvyTgd~-------i~i~~i~~~ 188 (190) +|+.+| ++++||..|+++|.+||+. +.+.+|+-+ T Consensus 222 ~ms~eeA~~la~~AL~~a~~~D~~sGG~d~~~~~~~~v~~i~~~ 265 (294) T 1q5r_H 222 DSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQA 265 (294) T ss_dssp SCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETT T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECC T ss_conf 99999999999999999996244568854345550489999589 No 8 >1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* 3gpj_N* 3gpt_N* 3gpw_N* ... Probab=100.00 E-value=5.5e-33 Score=224.71 Aligned_cols=174 Identities=18% Similarity=0.136 Sum_probs=145.6 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCC-HHH Q ss_conf 3717999997997999813654505367744510579815975999731305889999999999999853665630-679 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQLLRS-SVE 92 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~~~~-~~~ 92 (190) +|||+|||+++||||||+|+|+|.|.++.+++.+||++++|+++++ .+|..+|++.+.+.++.++++++...... +.. T Consensus 8 ~GtTivgi~~kdgVvlaaD~r~s~~~~i~~~~~~Ki~~i~d~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 86 (205) T 1ryp_H 8 LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCC-RSGSAADTQAIADIVQYHLELYTSQYGTPSTET 86 (205) T ss_dssp CCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEE-EEEBHHHHHHHHHHHHHHHHHHHHHHSSCCHHH T ss_pred CCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHH T ss_conf 7664999999999999988875568676536643599906978899-407689999999999999999888739962789 Q ss_pred HHHHHHHHHHH--HHCCCE--EEECC-CCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCH---HHHHHH Q ss_conf 99999761122--201310--45137-87646998058631141327996064234578898520789998---999999 Q gi|254780828|r 93 LAKDWRMDKYL--RNLEAM--ILIAD-KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSA---EEIARK 164 (190) Q Consensus 93 ~~~~~~~~~y~--~~~~~~--~~~~~-~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa---~ela~~ 164 (190) .++.+....|. +++... +.+.| ..+|.+|..|+.|+..+.+|.|+|||+.+|+++||+.|+|+|+. .+++++ T Consensus 87 ~~~~~~~~~~~~~~p~~~~~lvaG~d~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ls~~ea~~l~~~ 166 (205) T 1ryp_H 87 AASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKH 166 (205) T ss_dssp HHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEECCCCCEEECCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 99999999983535530577887660799968999979951996487998168279999999775527999999999999 Q ss_pred HHHHHHCCCEEECCCEEEEEEECC Q ss_conf 999754011022595699999417 Q gi|254780828|r 165 AMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 165 Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) ||..|.+||++||+++++.+|+.+ T Consensus 167 al~~~~~rD~~sg~~v~v~vi~~~ 190 (205) T 1ryp_H 167 SLSQAIKWDGSSGGVIRMVVLTAA 190 (205) T ss_dssp HHHHHHHHBTTCCSCEEEEEEETT T ss_pred HHHHHHHHCCCCCCCEEEEEECCC T ss_conf 999999751778998899999489 No 9 >1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=100.00 E-value=5.9e-33 Score=224.52 Aligned_cols=172 Identities=17% Similarity=0.111 Sum_probs=147.6 Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHH Q ss_conf 1799999799799981365450536774451057981597599973130588999999999999985366--56306799 Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSVEL 93 (190) Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~~~ 93 (190) ||+|||+++||||||||+|+|+|.++.+++++||++|+++++++ .+|..+|++.+.+.++.++++++.. ...++... T Consensus 1 TTivGi~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~I~~~i~~~-~aG~~aD~~~l~~~~~~~~~~~~~~~g~~~~v~~~ 79 (234) T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCC-GAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTA 79 (234) T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEE-EEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHH T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEEECCCEEEE-EECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 92999998999999996886668786258745479967979999-95072899999999999999867860998989999 Q ss_pred HHHHHHHHHHHH--CCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHHHHHH Q ss_conf 999976112220--131--045137876469980586311413279960642345788985207899989---9999999 Q gi|254780828|r 94 AKDWRMDKYLRN--LEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIARKAM 166 (190) Q Consensus 94 ~~~~~~~~y~~~--~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela~~Al 166 (190) ++.+....|.++ +.. .+.+.|..+|++|..|+.|+..+.+|.|+|||+.+|+++||+.|+++|+.+ +|+++|| T Consensus 80 ~~~l~~~l~~~~~~~~~~liiaG~D~~gp~Ly~idp~Gs~~~~~~~a~Gsgs~~a~~~Le~~~~~~ms~eeA~~l~~~al 159 (234) T 1iru_I 80 NRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAI 159 (234) T ss_dssp HHHHHHHHHHTTTCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHH T ss_pred HHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 99999999736788736999999808998189990894289960785367538899999974358979999999999999 Q ss_pred HHHHCCCEEECCCEEEEEEECC Q ss_conf 9754011022595699999417 Q gi|254780828|r 167 SIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 167 ~~A~erDvyTgd~i~i~~i~~~ 188 (190) ..+.+||.++|+++++.+|+.+ T Consensus 160 ~~~~~~d~~sg~~v~i~vitkd 181 (234) T 1iru_I 160 AAGIFNDLGSGSNIDLCVISKN 181 (234) T ss_dssp HHHHHHCTTCCSCEEEEEEETT T ss_pred HHHHHHCCCCCCCEEEEEEECC T ss_conf 9999646888995899999689 No 10 >1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=100.00 E-value=1.4e-32 Score=222.12 Aligned_cols=172 Identities=19% Similarity=0.135 Sum_probs=147.8 Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHH Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853--6656306799 Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVEL 93 (190) Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~~ 93 (190) ||+|||+++||||||+|+|+|+|+++.+++.+||++|+++++++ .+|..+|++.+.+.++.++++++ .....++... T Consensus 1 TTivgi~~~dgVviaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~-~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 79 (205) T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCC-RSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTA 79 (205) T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEECCCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 94999998999999988864638776448765399937974999-85245889999999999999999870898618999 Q ss_pred HHHHHHHHHHHH--CCC--EEEECC-CCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC---HHHHHHHH Q ss_conf 999976112220--131--045137-8764699805863114132799606423457889852078999---89999999 Q gi|254780828|r 94 AKDWRMDKYLRN--LEA--MILIAD-KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS---AEEIARKA 165 (190) Q Consensus 94 ~~~~~~~~y~~~--~~~--~~~~~~-~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s---a~ela~~A 165 (190) ++.++...|.++ +.. .+.+.| .+++.++..|+.|+..+.+|.|+|||+.+|+++|++.|+++|+ |.+++++| T Consensus 80 a~~l~~~l~~~~~p~~~~~llaG~D~~~~~~l~~id~~G~~~~~~~~a~G~g~~~a~~~L~~~~~~~mt~~eA~~l~~~a 159 (205) T 1iru_H 80 ASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANA 159 (205) T ss_dssp HHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 99999999851576348999976646898389998899977872189996875999999987600798999999999999 Q ss_pred HHHHHCCCEEECCCEEEEEEECC Q ss_conf 99754011022595699999417 Q gi|254780828|r 166 MSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 166 l~~A~erDvyTgd~i~i~~i~~~ 188 (190) |..|.+||++||++++|.+|+.+ T Consensus 160 l~~a~~~D~~sg~~v~v~~i~k~ 182 (205) T 1iru_H 160 LALAMERDGSSGGVIRLAAIAES 182 (205) T ss_dssp HHHHHHHBTTCCSCEEEEEEETT T ss_pred HHHHHHHCCCCCCCEEEEEEECC T ss_conf 99999636777996899999389 No 11 >1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 1g0u_I 1fnt_J 1z7q_J 2zcy_I* ... Probab=100.00 E-value=2.4e-32 Score=220.71 Aligned_cols=179 Identities=14% Similarity=0.110 Sum_probs=152.9 Q ss_pred CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCC Q ss_conf 817763717999997997999813654505367744510579815975999731305889999999999999853--665 Q gi|254780828|r 9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQL 86 (190) Q Consensus 9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~ 86 (190) +|+++||||+|||+++||||||||+|+|+|.++.+++.+||+++ +++++ +++|.++|++.+.+.++.+++.++ ... T Consensus 2 ~p~~~nG~T~vgi~~~dgVvlaaD~r~t~~~~~~~~~~~Ki~~~-~~i~~-~~aG~~aD~~~l~~~l~~~~~~~~~~~~~ 79 (204) T 1ryp_J 2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFL-GITGLATDVTTLNEMFRYKTNLYKLKEER 79 (204) T ss_dssp CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEE-TTEEE-EEEECHHHHHHHHHHHHHHHHHHHHHHSS T ss_pred CCCCCCCEEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEE-CCEEE-EEEECHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 98776873899999899999998788666888561775479994-99999-99766898999999999998888987399 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCE-----EEECCC--CCCEEEEECCCCCEEC-CCEEEEECCHHHHHHHHHHHHCCCCCH Q ss_conf 63067999999761122201310-----451378--7646998058631141-327996064234578898520789998 Q gi|254780828|r 87 LRSSVELAKDWRMDKYLRNLEAM-----ILIADK--TITLVITGMGDVLEPE-NGVMAIGSGGSYALSAARALMSTQNSA 158 (190) Q Consensus 87 ~~~~~~~~~~~~~~~y~~~~~~~-----~~~~~~--~~~~~~~~d~~g~~~~-~~~~a~GSGs~~A~g~Le~~y~~~~sa 158 (190) +.++..+++.++...|.++..|+ +.+.|. +.|.+|..|+.|...+ ..+++.|+|+.+|+++|++.|+++|+. T Consensus 80 ~~~~~~la~~l~~~~~~~~~~p~~~~~lvaG~d~~~g~~~l~~~D~~G~~~~~~~~~a~G~gs~~a~~~L~~~~~~~ls~ 159 (204) T 1ryp_J 80 AIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP 159 (204) T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCEEEECCEECCCCCCEEEEECCCCEEEEECCCEEEECCHHHHHHHHHHCCCCCCCH T ss_conf 87568899999999886175420100201055547897079998699829970364896076699999997302247999 Q ss_pred HH---HHHHHHHHHHCCCEEECCCEEEEEEECCC Q ss_conf 99---99999997540110225956999994178 Q gi|254780828|r 159 EE---IARKAMSIAADICVYTNHNIVLETLKVGD 189 (190) Q Consensus 159 ~e---la~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190) +| ++++||..|.+||++||++++|.+|+.+. T Consensus 160 ~ea~~l~~~al~~a~~~d~~sg~~~~v~ii~kdg 193 (204) T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDE 193 (204) T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCC T ss_conf 9999999999999987467669838999998995 No 12 >1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3bdm_H* 1fnt_I* ... Probab=100.00 E-value=2.5e-32 Score=220.64 Aligned_cols=173 Identities=18% Similarity=0.165 Sum_probs=147.3 Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHHHH Q ss_conf 1799999799799981365450536774451057981597599973130588999999999999985366--56306799 Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSVEL 93 (190) Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~~~ 93 (190) ||+|||+++||||||||+|+|.|+++.+++.+||++|+++++++ ++|..+|++.+.+.++.+.++++.. ....+... T Consensus 1 TTiVgi~~~dgVviaaD~r~t~g~~i~~~~~~KI~~I~d~i~~a-~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 79 (222) T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCA-GAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSA 79 (222) T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH T ss_conf 92999998999999986875568555347744489968979999-87867999999999999999987863898749999 Q ss_pred HHHHHHHHHH--HHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCH---HHHHHHHH Q ss_conf 9999761122--20131--04513787646998058631141327996064234578898520789998---99999999 Q gi|254780828|r 94 AKDWRMDKYL--RNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSA---EEIARKAM 166 (190) Q Consensus 94 ~~~~~~~~y~--~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa---~ela~~Al 166 (190) ++.+....|. +++.. .+.+.|..+|++|..|+.|...+.+|+|+|||+++|+++||+.|+++|+. .+++++|| T Consensus 80 a~~~~~~~~~~~~p~~~~~iiaG~d~~g~~Ly~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~~ea~~l~~~al 159 (222) T 1ryp_I 80 LQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAI 159 (222) T ss_dssp HHHHHHHHHHTTTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCEEECCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 99999999874016754899999849998799980775664136799879956889999965238989999999999999 Q ss_pred HHHHCCCEEECCCEEEEEEECCC Q ss_conf 97540110225956999994178 Q gi|254780828|r 167 SIAADICVYTNHNIVLETLKVGD 189 (190) Q Consensus 167 ~~A~erDvyTgd~i~i~~i~~~~ 189 (190) ..|.+||++||++++|.+|+-+. T Consensus 160 ~~a~~~d~~sg~~iei~vi~~~~ 182 (222) T 1ryp_I 160 QAGIWNDLGSGSNVDVCVMEIGK 182 (222) T ss_dssp HHHHHHCTTCCSCEEEEEEETTS T ss_pred HHHHHHCCCCCCCEEEEEEECCC T ss_conf 99986557789978999999599 No 13 >1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=100.00 E-value=2.3e-32 Score=220.80 Aligned_cols=172 Identities=21% Similarity=0.158 Sum_probs=150.2 Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHH Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853--6656306799 Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVEL 93 (190) Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~~ 93 (190) ||+|||+++||||||||+|+|+|+++.+++++||++++|+++++ ++|.++|.+.+.+.++.++++++ .....++..+ T Consensus 1 TT~iai~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~i~d~i~~~-~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 79 (204) T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGT-MAGGAADCSFWERLLARQCRIYELRNKERISVAAA 79 (204) T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEE-CCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCCCCEEEECCCEEEE-EECCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 95999998999999988864648777558755289978975899-84471678999999999999877630789867899 Q ss_pred HHHHHHHHHHHHCCC-----EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHHHHH Q ss_conf 999976112220131-----045137876469980586311413279960642345788985207899989---999999 Q gi|254780828|r 94 AKDWRMDKYLRNLEA-----MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIARKA 165 (190) Q Consensus 94 ~~~~~~~~y~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela~~A 165 (190) ++.+....|.++..| .+.+.|..+|.++..|+.|...+.+++|+|||+++|+++|++.|+++|+.+ +++++| T Consensus 80 ~~~l~~~~~~~~~~p~~~~~i~~G~d~~g~~l~~~d~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~~ea~~l~~~a 159 (204) T 1iru_L 80 SKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRA 159 (204) T ss_dssp HHHHHHHHHTTTTSCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCEEEECCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH T ss_conf 99999999972799852789999995488679999278328984357726885899999985545998999999999999 Q ss_pred HHHHHCCCEEECCCEEEEEEECC Q ss_conf 99754011022595699999417 Q gi|254780828|r 166 MSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 166 l~~A~erDvyTgd~i~i~~i~~~ 188 (190) |+.|.+||..+|+++++.+|+.+ T Consensus 160 l~~~~~~d~~sg~~i~v~~i~~~ 182 (204) T 1iru_L 160 IYQATYRDAYSGGAVNLYHVRED 182 (204) T ss_dssp HHHHHHHBTTCCSEEEEEEECSS T ss_pred HHHHHHHCCCCCCCEEEEEEECC T ss_conf 99999727778996699999489 No 14 >1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* Probab=100.00 E-value=2e-32 Score=221.26 Aligned_cols=181 Identities=15% Similarity=0.145 Sum_probs=150.3 Q ss_pred CCCCCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 77781776371799999799799981365450536774451057981597599973130588999999999999985366 Q gi|254780828|r 6 DKHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ 85 (190) Q Consensus 6 ~~~~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~ 85 (190) +..+|+. +|||+|||+++||||||||+|+|.|+++.+++++||++|+++++++ .+|.++|.+.+.+.++.++.++... T Consensus 33 ~~~~p~~-tGtTvvgi~~~dGVvlaaD~r~t~g~l~~~~~~~KI~~I~d~i~~~-~sG~~aD~~~l~~~l~~~~~~~~~~ 110 (266) T 1g0u_M 33 NTQQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVG-ISGDISDMQHIERLLKDLVTENAYD 110 (266) T ss_dssp -CCCCCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEE-EEEEHHHHHHHHHHHHHHHHHHHTT T ss_pred HCCCCCC-CCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EECCCHHHHHHHHHHHHHHHHHHHH T ss_conf 3338814-7533999998999999986876668665348765289957978999-8347077999999999999999975 Q ss_pred -------CCCCHHHHHHHHHHHHHHH-----HCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHH Q ss_conf -------5630679999997611222-----0131--0451378-76469980586311413279960642345788985 Q gi|254780828|r 86 -------LLRSSVELAKDWRMDKYLR-----NLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARA 150 (190) Q Consensus 86 -------~~~~~~~~~~~~~~~~y~~-----~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~ 150 (190) ....+..+++.+.+..|.. ++.. .+.+.|. +++.++..|+.|...+.+|+|+|||+.+|+++||+ T Consensus 111 ~~~~~~~~~~~~~~~a~~ls~~~y~~~~~~~P~~vs~liaG~d~~g~~~l~~iD~~G~~~~~~~~aiGsGs~~a~~~Le~ 190 (266) T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRK 190 (266) T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTT T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEECCEEEECCCHHHHHHHHHH T ss_conf 47667774027999999999988875433376640789988817997399998798557873779988768999999999 Q ss_pred HHC-----CCCC---HHHHHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf 207-----8999---8999999999754011022595699999417 Q gi|254780828|r 151 LMS-----TQNS---AEEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 151 ~y~-----~~~s---a~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) .|+ ++|+ |.+++++||+++.+||..+|++|+|.+|+.+ T Consensus 191 ~~~~~~~~~~ms~eea~~l~~~al~~~~~rD~~sg~~i~i~vI~kd 236 (266) T 1g0u_M 191 VVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKN 236 (266) T ss_dssp TCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC T ss_conf 8631278889899999999999999999645668996799999699 No 15 >1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=100.00 E-value=7e-32 Score=217.83 Aligned_cols=179 Identities=14% Similarity=0.159 Sum_probs=151.8 Q ss_pred CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCC Q ss_conf 817763717999997997999813654505367744510579815975999731305889999999999999853--665 Q gi|254780828|r 9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQL 86 (190) Q Consensus 9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~ 86 (190) .++++||||+|||+++||||||+|+|+|.|.++.+++.+||++|+++++++ ++|..+|++.+.+.++.++++++ ... T Consensus 2 ~~~~~nG~Tvigi~~~dgVvlaaD~r~t~~~~i~~~~~~Ki~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 80 (205) T 1iru_J 2 SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIG-LAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205) T ss_dssp CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEE-CCSCHHHHHHHHHHHHHHHHHHHHHSSS T ss_pred CCCCCCCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EECCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 743126743999998999999998875669766527654699957982899-7238178999999999988776665155 Q ss_pred CCCHHHHHHHHHHHHHHHHCCC-----EEEECCCC--CCEEEEECCCCC-EECCCEEEEECCHHHHHHHHHHHHCCCCCH Q ss_conf 6306799999976112220131-----04513787--646998058631-141327996064234578898520789998 Q gi|254780828|r 87 LRSSVELAKDWRMDKYLRNLEA-----MILIADKT--ITLVITGMGDVL-EPENGVMAIGSGGSYALSAARALMSTQNSA 158 (190) Q Consensus 87 ~~~~~~~~~~~~~~~y~~~~~~-----~~~~~~~~--~~~~~~~d~~g~-~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa 158 (190) ..++..+++.+....|.++..+ .+.+.|.+ .++++..|+.+. .++..|.|.|+|+.+++++||+.|+++|+. T Consensus 81 ~~~~~~la~~l~~~~~~~~~~p~~~~~liaG~d~~~~~~~l~~~d~~g~~~~~~~~~a~G~g~~~~~~~le~~~~~~mt~ 160 (205) T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205) T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEEECCCCCEEEECCEEEECCCHHHHHHHHHHHCCCCCCH T ss_conf 65417999999999886326883378999998579981799997399643562226674475599999999743334678 Q ss_pred HH---HHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf 99---9999999754011022595699999417 Q gi|254780828|r 159 EE---IARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 159 ~e---la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) +| ++++||..|.+||++||++++|.+|+.+ T Consensus 161 ~ea~~l~~~~l~~~~~rd~~sg~~v~v~ii~kd 193 (205) T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKD 193 (205) T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESS T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC T ss_conf 999999999999998644668991899999389 No 16 >1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=100.00 E-value=4.9e-32 Score=218.78 Aligned_cols=178 Identities=19% Similarity=0.106 Sum_probs=152.2 Q ss_pred CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC---CC Q ss_conf 817763717999997997999813654505367744510579815975999731305889999999999999853---66 Q gi|254780828|r 9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP---NQ 85 (190) Q Consensus 9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~---~~ 85 (190) +|+. +|||+|||+++||||||+|+|+|.|.++.+++++||++|+++++++ ++|.++|++.+.+.++.++.+++ .. T Consensus 3 ~~~~-~GtTivgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~l~~~~~~~~~~~~~ 80 (219) T 1iru_N 3 NPMV-TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLG-ASGDYADFQYLKQVLGQMVIDEELLGDG 80 (219) T ss_dssp SCCS-EECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEE-EEEEHHHHHHHHHHHHHHHHHHHHHCSS T ss_pred CCCC-CCCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-ECCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 9867-6217999998999999987876678665137765099917980599-4127779999999999999984664468 Q ss_pred CCCCHHHHHHHHHHHHHHHH-----CC--CEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC--CCC Q ss_conf 56306799999976112220-----13--1045137876469980586311413279960642345788985207--899 Q gi|254780828|r 86 LLRSSVELAKDWRMDKYLRN-----LE--AMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS--TQN 156 (190) Q Consensus 86 ~~~~~~~~~~~~~~~~y~~~-----~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~--~~~ 156 (190) ...++..+++.++...|.++ +. ..+.+.|.++|+++..|+.|...+.+++|+|||+++|+++||+.|+ ++| T Consensus 81 ~~~~~~~~a~~l~~~~y~~~~~~~p~~~~~l~aG~d~~~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~l 160 (219) T 1iru_N 81 HSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVL 160 (219) T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCC T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCEEEEECCEEEECCCHHHHHHHHHHHHHCCCCC T ss_conf 87878899999999999754324861179999997588866999889704666149998078899999999975224799 Q ss_pred C---HHHHHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf 9---8999999999754011022595699999417 Q gi|254780828|r 157 S---AEEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 157 s---a~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) + |.+++++||+.|.+||+++|+++++.+|+.+ T Consensus 161 s~~ea~~l~~~al~~~~~~d~~sg~~i~v~~i~~~ 195 (219) T 1iru_N 161 SQTEARDLVERCMRVLYYRDARSYNRFQTATVTEK 195 (219) T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETT T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC T ss_conf 99999999999999999851768994899999589 No 17 >1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g0u_K 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* 3hye_K* ... Probab=100.00 E-value=9.2e-32 Score=217.07 Aligned_cols=172 Identities=19% Similarity=0.143 Sum_probs=147.7 Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHH Q ss_conf 17999997997999813654505367744510579815975999731305889999999999999853--6656306799 Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVEL 93 (190) Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~~ 93 (190) ||+|||+++||||||+|+|+|.|+++.+++.+||++++++++++ ++|.++|.+.+.+.++.++.+++ .....++..+ T Consensus 1 TT~iai~~~dgVvlaaD~r~t~g~~i~~~~~~KI~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~v~~l 79 (212) T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGT-MAGGAADCQFWETWLGSQCRLHELREKERISVAAA 79 (212) T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEE-CCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 93999998999999985875658676358754189967957999-74271768999999999988888750898878999 Q ss_pred HHHHHHHHHHHHCCC-----EEEEC-CCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHHHH Q ss_conf 999976112220131-----04513-7876469980586311413279960642345788985207899989---99999 Q gi|254780828|r 94 AKDWRMDKYLRNLEA-----MILIA-DKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---EIARK 164 (190) Q Consensus 94 ~~~~~~~~y~~~~~~-----~~~~~-~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela~~ 164 (190) ++.+....|.++..+ .+++. +..+|++|..|+.|+..+.+++|+|+|+.+|+++||+.|+++|+.+ +++++ T Consensus 80 a~~l~~~~~~~~~~p~~~~~li~G~~~~~gp~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eea~~l~~~ 159 (212) T 1ryp_L 80 SKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKR 159 (212) T ss_dssp HHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEEECCCEEEEECCCEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHH T ss_conf 99999999985379861688998996189528999859868997671798885288999999874369998999999999 Q ss_pred HHHHHHCCCEEECCCEEEEEEECC Q ss_conf 999754011022595699999417 Q gi|254780828|r 165 AMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 165 Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) ||..|.+||.++|++++|.+|+-+ T Consensus 160 al~~~~~rd~~sg~~v~v~vvtkd 183 (212) T 1ryp_L 160 SILAAAHRDAYSGGSVNLYHVTED 183 (212) T ss_dssp HHHHHHHHBTTCCSEEEEEEEETT T ss_pred HHHHHHHHCCCCCCCEEEEEECCC T ss_conf 999999746878996599999389 No 18 >1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase/hydrolase activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Probab=100.00 E-value=1.5e-31 Score=215.73 Aligned_cols=175 Identities=17% Similarity=0.143 Sum_probs=149.1 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190) +|||+|||+++||||||+|+|+|.|+++.+++.+|||+|+++++++ ++|.++|++.+.+.++.+++.++. ....++. T Consensus 7 ~GtTivgi~~kdgVvlaaD~r~~~~~~~~~~~~~KI~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (217) T 1yar_H 7 TGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMT-IAGLVGDAQVLVRYMKAELELYRLQRRVNMPIE 85 (217) T ss_dssp --CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH T ss_pred CCCCEEEEEECCEEEEEECCCCCCCCEECCCCCCEEEEECCCCEEE-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 7463999998999999987876668763278755199977982267-555617899999999999777787428888999 Q ss_pred HHHHHHHHHHHHHHCCCE----EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCH---HHHHHH Q ss_conf 999999761122201310----4513787646998058631141327996064234578898520789998---999999 Q gi|254780828|r 92 ELAKDWRMDKYLRNLEAM----ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSA---EEIARK 164 (190) Q Consensus 92 ~~~~~~~~~~y~~~~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa---~ela~~ 164 (190) ..+..++...+..++.|+ ++++.+.+|.++..|+.|+..+..++|+|+|+.+|+++||+.|+++|+. .+++++ T Consensus 86 ~~~~~l~~~~~~~~~~p~~~~~liaG~d~~~~l~~iD~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~s~~ea~~l~~~ 165 (217) T 1yar_H 86 AVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIR 165 (217) T ss_dssp HHHHHHHHHHHHTTTSCCCEEEEEEEESSSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCEEEECCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99999999987226677427889974248875786179824887547853765599999999744379899999999999 Q ss_pred HHHHHHCCCEEECCCEEEEEEECCC Q ss_conf 9997540110225956999994178 Q gi|254780828|r 165 AMSIAADICVYTNHNIVLETLKVGD 189 (190) Q Consensus 165 Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190) ||..+.+||+.+|+++++.+|+.++ T Consensus 166 al~~~~~~d~~s~~~iev~~i~~~~ 190 (217) T 1yar_H 166 AISAAKQRDSASGGMIDVAVITRKD 190 (217) T ss_dssp HHHHHHHHCTTCCSCCEEEEEETTT T ss_pred HHHHHHHHCCCCCCEEEEEEEECCC T ss_conf 9999997478889869999997899 No 19 >1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R Probab=100.00 E-value=2.1e-31 Score=214.89 Aligned_cols=178 Identities=15% Similarity=0.131 Sum_probs=147.0 Q ss_pred CCEEECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC-- Q ss_conf 817763717999997997999813654505367744510579815975999731305889999999999999853665-- Q gi|254780828|r 9 YAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQL-- 86 (190) Q Consensus 9 ~~~~~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~-- 86 (190) +|+.. |||+|||+++||||||||+|+|.|.++.+++.+||++|++|++++ ++|.++|.+.+.+.++.+..+++... T Consensus 3 ~~i~t-GtTvvgi~~~dgVvlaaD~r~s~g~l~~~~~~~KI~~I~~~i~~~-~aG~~aD~~~l~~~l~~~~~~~~~~~~~ 80 (233) T 1ryp_N 3 QPIVT-GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVG-ISGDISDMQHIERLLKDLVTENAYDNPL 80 (233) T ss_dssp CCCEE-ECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEE-EEEEHHHHHHHHHHHHHHHHHHHTTCTT T ss_pred CCCCC-CCEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-ECCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 87166-635999998999999984786668664047755389966967999-6267078999999999999999874277 Q ss_pred -----CCCHHHHHHHHHHHHHH-----HHCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC Q ss_conf -----63067999999761122-----20131--0451378-76469980586311413279960642345788985207 Q gi|254780828|r 87 -----LRSSVELAKDWRMDKYL-----RNLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS 153 (190) Q Consensus 87 -----~~~~~~~~~~~~~~~y~-----~~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~ 153 (190) ...+..+++.+....|. +++.. .+.+.|. +.+.++..|+.|...+.++.|+|||+++|+++||+.|+ T Consensus 81 ~~~~~~l~~~~~a~~l~~~~y~~~~~~~P~~v~~li~G~d~~g~~~l~~~D~~G~~~~~~~~a~G~g~~~a~~~Le~~~~ 160 (233) T 1ryp_N 81 ADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVD 160 (233) T ss_dssp TTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCS T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCEEEEEECCCEEEEECCEEEECCCHHHHHHHHHHHHH T ss_conf 78763027999999999888765433477624899999807998599997797778884789989867999999999853 Q ss_pred -----CCCC---HHHHHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf -----8999---8999999999754011022595699999417 Q gi|254780828|r 154 -----TQNS---AEEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 154 -----~~~s---a~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) ++|+ |.+++++||+.|.+||+++|+++++.+|+-+ T Consensus 161 ~~~~~~~ms~eea~~l~~~al~~~~~rD~~sg~~i~v~vitkd 203 (233) T 1ryp_N 161 RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKN 203 (233) T ss_dssp SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC T ss_conf 1278889899999999999999999645668996899999899 No 20 >1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Probab=100.00 E-value=4.2e-31 Score=212.97 Aligned_cols=171 Identities=22% Similarity=0.177 Sum_probs=138.7 Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHH Q ss_conf 179999979979998136545053677445105798159759997313058899999999999998536--656306799 Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSVEL 93 (190) Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~~~ 93 (190) ||+|||+++||||||||+|+|+|+++.+++.+||++|+++++++ ++|..+|++.+.+.++.++++++. ....++..+ T Consensus 1 TTivgIk~kdgVvlaaD~r~t~g~~i~~~~~~KI~~i~d~i~~~-~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 79 (235) T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAG-IAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGK 79 (235) T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 91999998999999988875569776358765299978978999-80547889999999876423444200567648999 Q ss_pred HHHHHHHHHHH------HC--CCEEEECC------CCCCEEEEECCCCCEE--CCCEEEEECCHHHHHHHHHHHHCCCCC Q ss_conf 99997611222------01--31045137------8764699805863114--132799606423457889852078999 Q gi|254780828|r 94 AKDWRMDKYLR------NL--EAMILIAD------KTITLVITGMGDVLEP--ENGVMAIGSGGSYALSAARALMSTQNS 157 (190) Q Consensus 94 ~~~~~~~~y~~------~~--~~~~~~~~------~~~~~~~~~d~~g~~~--~~~~~a~GSGs~~A~g~Le~~y~~~~s 157 (190) ++.+....+.+ ++ .+.+.+.+ ..+|.+|..|+.|... +.+|+|+|||+.+|+++||+.|+++|| T Consensus 80 a~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~d~~~~~~ly~~d~~G~~~~~~~~~~a~GsG~~~a~~~Le~~~~~~ms 159 (235) T 1q5q_H 80 ANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSD 159 (235) T ss_dssp HHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCC T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCEEEECCCEEEEECCHHHHHHHHHHHCCCCCC T ss_conf 99999999870453334653145798853246667898559999846967874367689967889999999975568999 Q ss_pred HH---HHHHHHHHHHHCCCEEECC-------CEEEEEEEC Q ss_conf 89---9999999975401102259-------569999941 Q gi|254780828|r 158 AE---EIARKAMSIAADICVYTNH-------NIVLETLKV 187 (190) Q Consensus 158 a~---ela~~Al~~A~erDvyTgd-------~i~i~~i~~ 187 (190) .+ +++++||+.|++||.+||+ ++.+.+|+. T Consensus 160 ~eea~~la~~al~~a~~rD~~sGg~~~~~~~~~~~~~~~~ 199 (235) T 1q5q_H 160 EETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQ 199 (235) T ss_dssp HHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEET T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEC T ss_conf 9999999999999998624556884323443259999948 No 21 >1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Probab=99.98 E-value=1.3e-30 Score=209.88 Aligned_cols=172 Identities=17% Similarity=0.079 Sum_probs=148.1 Q ss_pred EEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHH Q ss_conf 179999979979998136545053677445105798159759997313058899999999999998536--656306799 Q gi|254780828|r 16 TTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSVEL 93 (190) Q Consensus 16 TTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~~~ 93 (190) ||+|||+++||||||||+|+|.|.++.+++.+||++|+++++++ ++|..+|.+.+.+.++.+++.++. ....++..+ T Consensus 1 TT~vgi~~~dgVvlaaD~r~s~~~~~~~~~~~KI~~i~~~i~~~-~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 79 (202) T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMT-TAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAI 79 (202) T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH T ss_pred CEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH T ss_conf 91999998999999986876658765068756299967982898-32560789999999999987777504898769999 Q ss_pred HHHHHHHHHHHHCCC-----EEEECCCCCCEEEEECCCCCEE-CCCEEEEECCHHHHHHHHHHHHCCCCCH---HHHHHH Q ss_conf 999976112220131-----0451378764699805863114-1327996064234578898520789998---999999 Q gi|254780828|r 94 AKDWRMDKYLRNLEA-----MILIADKTITLVITGMGDVLEP-ENGVMAIGSGGSYALSAARALMSTQNSA---EEIARK 164 (190) Q Consensus 94 ~~~~~~~~y~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~-~~~~~a~GSGs~~A~g~Le~~y~~~~sa---~ela~~ 164 (190) ++.++...+.+++.| .+.+.|..+|.++..|+.|... ..+|+|+|||+.+|+++|++.|+++|+. .+++++ T Consensus 80 a~~l~~~~~~~~~~p~~~~~liaG~d~~~~~l~~~d~~G~~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~ 159 (202) T 1j2q_H 80 ATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVR 159 (202) T ss_dssp HHHHHHHHHHTTTSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEECCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99987888750668701278999994899789999679987871446883687189999999656799699999999999 Q ss_pred HHHHHHCCCEEECCCEEEEEEECC Q ss_conf 999754011022595699999417 Q gi|254780828|r 165 AMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 165 Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) ||..|.++|.+||+++++.+|+.+ T Consensus 160 ~l~~~~~~d~~~g~~i~v~~i~~~ 183 (202) T 1j2q_H 160 AIYSAMKRDSASGDGIDVVKITED 183 (202) T ss_dssp HHHHHHTTCTTSCSCEEEEEECSS T ss_pred HHHHHHHHCCCCCCEEEEEEEECC T ss_conf 999999746888983899999889 No 22 >3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Probab=99.97 E-value=9.8e-30 Score=204.39 Aligned_cols=173 Identities=21% Similarity=0.139 Sum_probs=144.9 Q ss_pred CEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHH Q ss_conf 717999997997999813654505367744510579815975999731305889999999999999853--665630679 Q gi|254780828|r 15 ATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVE 92 (190) Q Consensus 15 GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~ 92 (190) -||+|||+++||||||+|+|+|.|.++.+++.+||++|+++++++ ++|..+|.+.+.+.++.++++++ ......+.. T Consensus 1 MTT~vgi~~~dgVvlaaD~r~t~~~~~~~~~~~KI~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 79 (219) T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMT-IAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLA 79 (219) T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEE-CCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHH T ss_pred CCEEEEEEECCEEEEEECCCCCCCCEECCCCCCEEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 932999998999999983886668663068755699978968999-6446388999999999998876540255665478 Q ss_pred HHHHHHHHHHHHHCCC---E--EEECC-CCCCEEEEECCCCCE-ECCCEEEEECCHHHHHHHHHHHHCCCCCHH---HHH Q ss_conf 9999976112220131---0--45137-876469980586311-413279960642345788985207899989---999 Q gi|254780828|r 93 LAKDWRMDKYLRNLEA---M--ILIAD-KTITLVITGMGDVLE-PENGVMAIGSGGSYALSAARALMSTQNSAE---EIA 162 (190) Q Consensus 93 ~~~~~~~~~y~~~~~~---~--~~~~~-~~~~~~~~~d~~g~~-~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---ela 162 (190) +++.+....|.++..| . +.+.+ .++|+++..|+.|.. +..+|.|+|+|+.+|+++||+.|+++|+.+ +++ T Consensus 80 ~a~~l~~~~~~~~~~P~~~~~llaG~d~~~~~~L~~~d~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~~ea~~l~ 159 (219) T 3h4p_a 80 CATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLA 159 (219) T ss_dssp HHHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEECCCCCEEECCEEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 99999999985167773489999998258993576652898802334047743671876546761567799999999999 Q ss_pred HHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf 99999754011022595699999417 Q gi|254780828|r 163 RKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 163 ~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) ++||..|.+||+++|++++|.+|+.+ T Consensus 160 ~~al~~~~~~d~~s~~~v~v~vi~~~ 185 (219) T 3h4p_a 160 LNALKSAMERDTFSGNGISLAVITKD 185 (219) T ss_dssp HHHHHHHHTSCSSCCSCCCEEEEETT T ss_pred HHHHHHHHHHCCCCCCCEEEEEEECC T ss_conf 99999998636788996799999789 No 23 >1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=99.97 E-value=4.9e-30 Score=206.26 Aligned_cols=173 Identities=14% Similarity=0.095 Sum_probs=144.4 Q ss_pred CEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHHH Q ss_conf 7179999979979998136545053677445105798159759997313058899999999999998536--65630679 Q gi|254780828|r 15 ATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSVE 92 (190) Q Consensus 15 GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~~ 92 (190) -||+|||+++||||||||+|+|+|+++.+++.+|||+++++++++ .+|..+|++.+.+.++.++++++. .....+.. T Consensus 1 Mt~vvgi~~~dgVviaaDtr~~~g~~~~~~~~~KI~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (201) T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLL-CVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTA 79 (201) T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEE-EEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHH T ss_pred CEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 909999998999999987875679731168755199946968999-7146488999999998776666663088676899 Q ss_pred HHHHHHHHHHHH-----HCCC--EEEECC-CCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCH---HHH Q ss_conf 999997611222-----0131--045137-87646998058631141327996064234578898520789998---999 Q gi|254780828|r 93 LAKDWRMDKYLR-----NLEA--MILIAD-KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSA---EEI 161 (190) Q Consensus 93 ~~~~~~~~~y~~-----~~~~--~~~~~~-~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa---~el 161 (190) .++.+....|.. ++.. .+.+.+ ..+|.++..|+.|...+.+|+|+|||+.+|+++|++.|+++|+. .++ T Consensus 80 ~~~~~~~~~~~~~~~~~p~~~~~liaG~d~~~~~~l~~~d~~G~~~~~~~~a~Gsg~~~~~~~L~~~~~~~~~~~ea~~l 159 (201) T 1iru_K 80 AANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVEL 159 (201) T ss_dssp HHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEECCCEEEEECCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHH T ss_conf 99999999999986468850454461162589827999749853886683466055488999998651489599999999 Q ss_pred HHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf 999999754011022595699999417 Q gi|254780828|r 162 ARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 162 a~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) +++||..|.+||++||++++|.+|+.+ T Consensus 160 ~~~~l~~~~~rd~~~g~~~~v~vv~~~ 186 (201) T 1iru_K 160 LRKCLEELQKRFILNLPTFSVRIIDKN 186 (201) T ss_dssp HHHHHHHHHHTBCBCCCCEEEEEEETT T ss_pred HHHHHHHHHHHCCCCCCCEEEEEECCC T ss_conf 999999999864877991599999389 No 24 >1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=99.97 E-value=7.2e-30 Score=205.24 Aligned_cols=175 Identities=17% Similarity=0.079 Sum_probs=146.3 Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCH Q ss_conf 63717999997997999813654505367744510579815975999731305889999999999999853--6656306 Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSS 90 (190) Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~ 90 (190) -+|||+|||+++||||||||+|++.|.++.+++.+||++|++|++++ .+|..+|.+.+.+.++.++.+++ .....++ T Consensus 29 ~~G~T~vgik~kdgVvlaad~r~~~~~~~~~~~~~KI~~I~d~i~~~-~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~ 107 (261) T 1iru_C 29 GHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACS-VAGITSDANVLTNELRLIAQRYLLQYQEPIPC 107 (261) T ss_dssp TTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH T ss_pred HCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEECCCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 75887899997999999997776667832566455089847977999-67807999999999999999879971999983 Q ss_pred HHHHHHHHHHHHH-------HHCCCE--EEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHC-CCCCHH Q ss_conf 7999999761122-------201310--451378-76469980586311413279960642345788985207-899989 Q gi|254780828|r 91 VELAKDWRMDKYL-------RNLEAM--ILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMS-TQNSAE 159 (190) Q Consensus 91 ~~~~~~~~~~~y~-------~~~~~~--~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~-~~~sa~ 159 (190) ..+++.+....+. +++... +.+.|. .+|.+|..|+.|+..+.++.|+|||+.+|+++|++.|+ ++|+.+ T Consensus 108 ~~la~~l~~~~~~~~~~~~~rP~~v~~ii~G~D~~~gp~Ly~~d~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~mt~e 187 (261) T 1iru_C 108 EQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLK 187 (261) T ss_dssp HHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCEEECCEEEECCCCHHHHHHHHHHCCCCCCCHH T ss_conf 89999999998887502455765505699987179985688658996378107289889709999999951677898999 Q ss_pred ---HHHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf ---99999999754011022595699999417 Q gi|254780828|r 160 ---EIARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 160 ---ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) +++++||+.|.+||..++++++|.+|+.+ T Consensus 188 ea~~la~~al~~a~~~d~~s~~~iev~vi~k~ 219 (261) T 1iru_C 188 SALALAIKVLNKTMDVSKLSAEKVEIATLTRE 219 (261) T ss_dssp HHHHHHHHHHHHSSSCTTCCSTTCEEEEEECC T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC T ss_conf 99999999999986054788981899999816 No 25 >1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3bdm_B* 1z7q_C* 2zcy_B* 1g0u_B 1fnt_C 1vsy_C ... Probab=99.97 E-value=1.7e-29 Score=202.95 Aligned_cols=175 Identities=18% Similarity=0.142 Sum_probs=146.3 Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCH Q ss_conf 637179999979979998136545053677445105798159759997313058899999999999998536--656306 Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSS 90 (190) Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~ 90 (190) .+|||+|||+++||||||+|+|+++|..+.+++.+||++++++++++ ++|.++|.+.+.+.++.++++++. ....++ T Consensus 29 ~~G~t~vgi~~~dgVvlaad~~~~~~~~~~~~~~~Ki~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 107 (244) T 1ryp_C 29 SHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVA-VAGLTADAEILINTARIHAQNYLKTYNEDIPV 107 (244) T ss_dssp TTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH T ss_pred HCCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEE-EECCHHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 66887899996999999996776777760367542599907982699-94670659999999999999999984999999 Q ss_pred HHHHHHHHHHHH-------HHHCCCE--EEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH Q ss_conf 799999976112-------2201310--451378-764699805863114132799606423457889852078999899 Q gi|254780828|r 91 VELAKDWRMDKY-------LRNLEAM--ILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE 160 (190) Q Consensus 91 ~~~~~~~~~~~y-------~~~~~~~--~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e 160 (190) ..+++.+....+ .+++... +.+.|. .+|.+|..|+.|+..+.++.|+|+|+.+|+++|++.|+++|+.+| T Consensus 108 ~~l~~~l~~~~~~~~~~~~~rP~~v~~lvaG~d~~~gp~Ly~id~~Gs~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~ee 187 (244) T 1ryp_C 108 EILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDD 187 (244) T ss_dssp HHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEEEEECCCEEEEEECEEEECCCHHHHHHHHHHHCCCCCCHHH T ss_conf 99999999999876412566775278999998089997799966988898538799994889999999755766999999 Q ss_pred ---HHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf ---9999999754011022595699999417 Q gi|254780828|r 161 ---IARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 161 ---la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) ++++||..|.+||..+|++++|.+|+.+ T Consensus 188 ai~l~~~al~~~~~~d~~~~~~iev~iv~k~ 218 (244) T 1ryp_C 188 AIELALKTLSKTTDSSALTYDRLEFATIRKG 218 (244) T ss_dssp HHHHHHHHHHHHCSSSSCCGGGEEEEEEECC T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEECC T ss_conf 9999999999997235888884699999868 No 26 >1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Probab=99.97 E-value=1.9e-29 Score=202.62 Aligned_cols=173 Identities=17% Similarity=0.186 Sum_probs=144.2 Q ss_pred CEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHHH Q ss_conf 717999997997999813654505367744510579815975999731305889999999999999853--665630679 Q gi|254780828|r 15 ATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSVE 92 (190) Q Consensus 15 GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~~ 92 (190) -||+|||+++|||+||||+|+|.|.++.+++.+|||+|+++++++ ++|.++|.+.+.+.++.++.+++ .....++.. T Consensus 1 M~Tivgi~~~dgVviaaD~r~~~g~~~~~~~~~Ki~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 79 (198) T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMS-FAGEAGDTVQFAEYIQANIQLYSIREDYELSPQA 79 (198) T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEE-EEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHH T ss_pred CEEEEEEEECCEEEEEECCCCCCCCEEECCCCCEEEEECCCEEEE-ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHH T ss_conf 919999998999999997886669776447734499916978999-7677626899999999998888987299998889 Q ss_pred HHHHHHHHHHH-----HHCCCEE--EECC--CCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH---H Q ss_conf 99999761122-----2013104--5137--876469980586311413279960642345788985207899989---9 Q gi|254780828|r 93 LAKDWRMDKYL-----RNLEAMI--LIAD--KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE---E 160 (190) Q Consensus 93 ~~~~~~~~~y~-----~~~~~~~--~~~~--~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~---e 160 (190) +++..+...|. +++...+ .+.| .++|++|..|+.|...+.+|.|+|+|+.+|+++|++.|+++|+.+ + T Consensus 80 ~~~~~~~~~~~~~~~~rP~~~~~ivaG~D~~~~~p~L~~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~ 159 (198) T 1ryp_K 80 VSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLD 159 (198) T ss_dssp HHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEECCCCCEEECCEEEEEECCCCHHHHHHHHCCCCCCHHHHHH T ss_conf 99999999988765578731688898871678975798755986478647589973661026899965669979999999 Q ss_pred HHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf 9999999754011022595699999417 Q gi|254780828|r 161 IARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 161 la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) ++++||.++.+||.+++++++|.+|+.+ T Consensus 160 l~~~al~~~~~~d~~s~~~~~v~ii~k~ 187 (198) T 1ryp_K 160 LLKLCVQELEKRMPMDFKGVIVKIVDKD 187 (198) T ss_dssp HHHHHHHHHHHHCSBCCCCEEEEEEETT T ss_pred HHHHHHHHHHHHCCCCCCCEEEEEECCC T ss_conf 9999999998646767995799999289 No 27 >3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Probab=99.96 E-value=2.9e-28 Score=195.24 Aligned_cols=171 Identities=22% Similarity=0.142 Sum_probs=141.4 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC--CCCCHH Q ss_conf 371799999799799981365450536774451057981597599973130588999999999999985366--563067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ--LLRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~--~~~~~~ 91 (190) +|||+|||+++||||||+|+|.+ ++++.+++.+||++|+++++++ ++|.++|++.+.+.++.++++++.. ...++. T Consensus 37 ~G~TvIgik~~dgVvlaad~r~t-~~~~~~~~~~KI~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 114 (264) T 3h4p_A 37 RGTTAIGIACKDGVVLAVDRRIT-SKLVKIRSIEKIFQIDDHVAAA-TSGLVADARVLIDRARLEAQIYRLTYGEEISIE 114 (264) T ss_dssp HSCCEEEECCSSEEEEEEECCCC-STTBCTTTCCCEEEEETTEEEE-EEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHH T ss_pred CCCCEEEEEECCEEEEEEECCCC-CCCCCCCCCCEEEEECCCCEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 59878999969999999956777-7763467666389960783389-514538899999999999999899878987489 Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCH---H Q ss_conf 99999976112-------220131--04513787646998058631141327996064234578898520789998---9 Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSA---E 159 (190) Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa---~ 159 (190) .+++.++...+ .+++.. .+.+.+..+|.+|..|+.|+..+.++.|+|+|+.+|+++|++.|+++|+. . T Consensus 115 ~la~~~~~~~~~~~~~~~~rP~~v~~liaG~d~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~y~~~ms~eeai 194 (264) T 3h4p_A 115 MLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGL 194 (264) T ss_dssp HHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEECCCCEEECCCHHHHHHHHHHHCCCCCCHHHHH T ss_conf 99999999999875356767665367999961799828995677362235624444768999999997644899999999 Q ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf 99999999754011022595699999417 Q gi|254780828|r 160 EIARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 160 ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) +++++||..|.+++ ++++++|.+|..+ T Consensus 195 ~lal~aL~~a~~~~--~~~~~ei~ii~~~ 221 (264) T 3h4p_A 195 ELAITALTKANEDI--KPENVDVCIITVK 221 (264) T ss_dssp HHHHHHHHHHSSSC--CTTSEEEEEEETT T ss_pred HHHHHHHHHHHHCC--CCCCEEEEEEEEC T ss_conf 99999999985446--8786799999954 No 28 >1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=99.96 E-value=1e-27 Score=191.84 Aligned_cols=171 Identities=14% Similarity=0.035 Sum_probs=141.3 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190) +|||+|||+++||||||+|+|.+++.. ..++.+|||+|+++++++ .+|..+|.+.+.+.++.+.++++. ....++. T Consensus 30 ~Gttvigik~~dgVvlaaD~r~~~~~~-~~~~~~ki~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (233) T 1iru_B 30 GGAPSVGIKAANGVVLATEKKQKSILY-DERSVHKVEPITKHIGLV-YSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTA 107 (233) T ss_dssp TSCCEEEEECSSCEEEEEECCCCCSSB-CSTTCCSSEESSSSEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCC-CCCCCCEEEEEECCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 698789999599999999677666773-557653399960762268-886438899999999999999999849989899 Q ss_pred HHHHHHHHHHHH-------HHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH-- Q ss_conf 999999761122-------20131--0451378764699805863114132799606423457889852078999899-- Q gi|254780828|r 92 ELAKDWRMDKYL-------RNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE-- 160 (190) Q Consensus 92 ~~~~~~~~~~y~-------~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e-- 160 (190) .+++.++...+. +++.. .+.+.+.++|+++..|+.|+..+.++.++|+|+.+|+++||+.|+++|+.+| T Consensus 108 ~l~~~~~~~~~~~~~~~~~~p~~~~~ii~g~d~~~p~l~~id~~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~s~eea~ 187 (233) T 1iru_B 108 QLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAI 187 (233) T ss_dssp HHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEECCCCEEEEECEEEECCCHHHHHHHHHHHCCCCCCHHHHH T ss_conf 99999999998851301468617998751135788758999278059984538754754889999986477998999999 Q ss_pred -HHHHHHHHHHCCCEEECCCEEEEEEEC Q ss_conf -999999975401102259569999941 Q gi|254780828|r 161 -IARKAMSIAADICVYTNHNIVLETLKV 187 (190) Q Consensus 161 -la~~Al~~A~erDvyTgd~i~i~~i~~ 187 (190) ++++||+.+.+||. +++++++.+|+. T Consensus 188 ~l~~~~l~~~~~~d~-~~~~iev~ii~~ 214 (233) T 1iru_B 188 HTAILTLKESFEGQM-TEDNIEVGICNE 214 (233) T ss_dssp HHHHHHHHTTCCSCC-CSSSEEEEEEET T ss_pred HHHHHHHHHHHHCCC-CCCCEEEEEEEC T ss_conf 999999999985668-889789999958 No 29 >1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase/hydrolase activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A Probab=99.96 E-value=2.1e-27 Score=189.76 Aligned_cols=174 Identities=16% Similarity=0.084 Sum_probs=141.3 Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCH Q ss_conf 637179999979979998136545053677445105798159759997313058899999999999998536--656306 Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSS 90 (190) Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~ 90 (190) -+|||+|||+++||||||+|+|.+.+ ++..++.+||++|+++++++ .+|.++|.+.+.+.++.++.+++. ....++ T Consensus 32 ~~G~t~Igi~~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 109 (233) T 1yar_A 32 KKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAV-TSGLVADARVLVDFARISAQQEKVTYGSLVNI 109 (233) T ss_dssp TTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEE-EEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH T ss_pred HCCCCEEEEEECCEEEEEEECCCCCC-CCCCCCCCEEEEEECCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH T ss_conf 75876899996999999996676666-61567665079960652578-52150458999999999999999870996408 Q ss_pred HHHHHHHHHHH----H---HHHCC--CEEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH-- Q ss_conf 79999997611----2---22013--1045137876469980586311413279960642345788985207899989-- Q gi|254780828|r 91 VELAKDWRMDK----Y---LRNLE--AMILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE-- 159 (190) Q Consensus 91 ~~~~~~~~~~~----y---~~~~~--~~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~-- 159 (190) ...++.+.... + .+++. ..+.+.|.++|++|..|+.|+..+.++.|+|+|+++|.++|++.|+++|+.+ T Consensus 110 ~~~~~~l~~~~~~~~~~~~~rP~~~~~iiaG~d~~gp~Ly~id~~Gs~~~~~~~a~G~gs~~~~~~L~~~~~~~ms~~ea 189 (233) T 1yar_A 110 ENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEA 189 (233) T ss_dssp HHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH T ss_conf 99999999999998601466786368999997389980799647325774028998886699999998761237888999 Q ss_pred -HHHHHHHHHHHCCCEEECCCEEEEEEECCC Q ss_conf -999999997540110225956999994178 Q gi|254780828|r 160 -EIARKAMSIAADICVYTNHNIVLETLKVGD 189 (190) Q Consensus 160 -ela~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190) +++++||..+.++|. +.++++|.+|+.++ T Consensus 190 ~~l~~~~L~~~~~~~~-~~~~iei~~i~~~~ 219 (233) T 1yar_A 190 VTLGIKALKSSLEEGE-ELKAPEIASITVGN 219 (233) T ss_dssp HHHHHHHHHHTSCSSC-CCCCCEEEEEETTS T ss_pred HHHHHHHHHHHHHCCC-CCCCEEEEEEECCC T ss_conf 9999999999985467-88971999999299 No 30 >1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 1vsy_B ... Probab=99.96 E-value=1.3e-27 Score=191.18 Aligned_cols=172 Identities=17% Similarity=0.078 Sum_probs=136.7 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHH-H--CCCCCCCH Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998-5--36656306 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQ-Y--PNQLLRSS 90 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~-~--~~~~~~~~ 90 (190) +|||+|||+++||||||+|+|++.+. +.+++.+||++|+++++++ .+|.++|.+.+.+.++..... + ......++ T Consensus 30 ~G~Tvvgik~~dgVvlaad~r~~~~~-~~~~~~~Ki~~i~~~i~~~-~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~ 107 (250) T 1ryp_B 30 QGVTSLGIKATNGVVIATEKKSSSPL-AMSETLSKVSLLTPDIGAV-YSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPT 107 (250) T ss_dssp TSCCEEEEEETTEEEEEEECCCSCSS-BCGGGCCSSEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCH T ss_pred CCCCEEEEEECCEEEEEEECCCCCCC-CCCCCCCCEEEECCCCEEE-EEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 49868999959999999936766655-1556556379971662379-997343189999999999999999985989999 Q ss_pred HHHHHHHH----HHHH---HHHCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHH- Q ss_conf 79999997----6112---220131--0451378-76469980586311413279960642345788985207899989- Q gi|254780828|r 91 VELAKDWR----MDKY---LRNLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAE- 159 (190) Q Consensus 91 ~~~~~~~~----~~~y---~~~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~- 159 (190) ..+++... .+.+ .+++.. .+.+.|. .+|.+|..|+.|+..+.++.|+|||+.+|+++||+.|+++|+.+ T Consensus 108 ~~la~~~~~~~~~~~~~~~~rp~~v~~li~G~D~~~gp~Ly~id~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~ee 187 (250) T 1ryp_B 108 KLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELED 187 (250) T ss_dssp HHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEECCCEEEEECCEEEECCCHHHHHHHHHHHCCCCCCHHH T ss_conf 99999999999997641466772689999987289996799985867999756899678509999999976458999899 Q ss_pred --HHHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf --99999999754011022595699999417 Q gi|254780828|r 160 --EIARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 160 --ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) +++.+||..+.++|. +++++++.+|+.+ T Consensus 188 a~~la~~al~~~~~~d~-~~~~iev~vi~~~ 217 (250) T 1ryp_B 188 AIHIALLTLKESVEGEF-NGDTIELAIIGDE 217 (250) T ss_dssp HHHHHHHHHHHHCCSCC-STTTEEEEEECSC T ss_pred HHHHHHHHHHHHHHCCC-CCCCEEEEEEECC T ss_conf 99999999999861668-8896899999679 No 31 >1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 2z5c_C 3bdm_D* 1z7q_E 1fnt_E* 2zcy_D* 1vsy_E ... Probab=99.96 E-value=2.7e-27 Score=189.15 Aligned_cols=173 Identities=14% Similarity=0.042 Sum_probs=142.6 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190) +|||+|||+++||||||+|+|.+.+ ++..++.+||++|+++++++ ++|..+|++.+.+.++.++++++. ....++. T Consensus 25 ~G~t~vgi~~~dgVvla~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 102 (242) T 1ryp_E 25 LGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCA-MSGLTADARSMIEHARTAAVTHNLYYDEDINVE 102 (242) T ss_dssp TSCCEEEEECSSCEEEEEECCCSST-TBCGGGCCCEEEEETTEEEE-EEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHH T ss_pred CCCCEEEEEECCEEEEEEECCCCCC-CCCCCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 5987899995999999996776677-61567644299943979999-998479999999999999999899859999706 Q ss_pred HHHHHHHHHHH-------------HHHCCCE--EEECC-CCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCC Q ss_conf 99999976112-------------2201310--45137-87646998058631141327996064234578898520789 Q gi|254780828|r 92 ELAKDWRMDKY-------------LRNLEAM--ILIAD-KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQ 155 (190) Q Consensus 92 ~~~~~~~~~~y-------------~~~~~~~--~~~~~-~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~ 155 (190) .+++.+....+ .+++... +.+.| .++|.+|..|+.|+..+.++.|+|+|+.+++++|++.|+++ T Consensus 103 ~l~~~la~~~~~~~~~~~~~~~~~~rP~~~~~li~G~D~~~~p~Ly~idp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ 182 (242) T 1ryp_E 103 SLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSS 182 (242) T ss_dssp HHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTT T ss_pred HHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEEEEECCCCCCEEEEECCCEEEEEECEEECCCCHHHHHHHHHHHCCCC T ss_conf 68999999999986412302554367717999998870799967998869878997243870676599999999754699 Q ss_pred CCHH---HHHHHHHHHHHCCCEEECCCEEEEEEECCC Q ss_conf 9989---999999997540110225956999994178 Q gi|254780828|r 156 NSAE---EIARKAMSIAADICVYTNHNIVLETLKVGD 189 (190) Q Consensus 156 ~sa~---ela~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190) |+.+ +++.+||..+.++|. +++++++.+|..++ T Consensus 183 ms~~ea~~l~~~~l~~~~~~~~-~~~~~~v~~i~~~~ 218 (242) T 1ryp_E 183 LTLKEAELLVLKILKQVMEEKL-DENNAQLSCITKQD 218 (242) T ss_dssp CCHHHHHHHHHHHHHHHCSSCC-CTTSEEEEEEETTT T ss_pred CCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCC T ss_conf 9999999999999999985458-99976999998799 No 32 >1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A* Probab=99.95 E-value=5.9e-27 Score=187.03 Aligned_cols=173 Identities=18% Similarity=0.144 Sum_probs=139.8 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHH Q ss_conf 3717999997997999813654505367744510579815975999731305889999999999999853--66563067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (190) ||||+|||+++||||||||+|.+++.. .+++.+||++|+++++++ .+|.++|++.+.+.++.++.+++ .....++. T Consensus 33 ~G~T~Igik~kdgVvlaad~~~~~~~~-~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~ 110 (246) T 1j2p_A 33 RGATAIGIKCKEGVILIADKRVGSKLL-EKDTIEKIYKIDEHICAA-TSGLVADARVLIDRARIEAQINRLTYDIPITVK 110 (246) T ss_dssp TSCCEEEEEETTEEEEEEECCCSCTTB-CGGGCCSEEECSSSEEEE-EEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHH T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCC-CCCCCCCEEECCCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 598789999799999999667667672-556358789846979999-715678899999999999997189719988699 Q ss_pred HHHHHHHHHHH-------HHHCCCE-EEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH--- Q ss_conf 99999976112-------2201310-451378764699805863114132799606423457889852078999899--- Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEAM-ILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE--- 160 (190) Q Consensus 92 ~~~~~~~~~~y-------~~~~~~~-~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e--- 160 (190) .++..+....+ .+++... +++..+++|.+|..|+.|+..+.++.|+|+|+.+|+++||+.|+++|+.+| T Consensus 111 ~la~~l~~~~~~~~~~~~~rP~~v~~li~G~D~~p~Ly~id~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~mt~eeai~ 190 (246) T 1j2p_A 111 ELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNEVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMV 190 (246) T ss_dssp HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEESSSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCHHHHHH T ss_conf 99999999999998742778617999999977997289986887667554899888669999999965447999999999 Q ss_pred HHHHHHHHHHCCCEEECCCEEEEEEECCC Q ss_conf 99999997540110225956999994178 Q gi|254780828|r 161 IARKAMSIAADICVYTNHNIVLETLKVGD 189 (190) Q Consensus 161 la~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190) ++.+||..+.++|..+ ++++|.+++.++ T Consensus 191 la~~al~~~~~~d~~~-~~iei~vv~~~~ 218 (246) T 1j2p_A 191 LGLVAMGLSIESELVP-ENIEVGYVKVDD 218 (246) T ss_dssp HHHHHHHHHHTSCCCG-GGEEEEEEETTT T ss_pred HHHHHHHHHHHCCCCC-CCEEEEEEEECC T ss_conf 9999999997454777-966999999189 No 33 >1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=99.95 E-value=5.2e-27 Score=187.35 Aligned_cols=173 Identities=15% Similarity=0.075 Sum_probs=142.8 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCC--CCCHH Q ss_conf 3717999997997999813654505367744510579815975999731305889999999999999853665--63067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQL--LRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~~--~~~~~ 91 (190) +|||+|||+++||||||+|+|.+.+. +..++.+||++|+++++++ ++|..+|++.+.+.++.++.+++... ..++. T Consensus 33 ~G~t~vgik~~dgVvla~d~r~~~~~-~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 110 (241) T 1iru_E 33 LGSTAIGIQTSEGVCLAVEKRITSPL-MEPSSIEKIVEIDAHIGCA-MSGLIADAKTLIDKARVETQNHWFTYNETMTVE 110 (241) T ss_dssp TSCCEEEEEETTEEEEEEECCCCCTT-BCTTSCCSEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH T ss_pred CCCCEEEEEECCEEEEEEECCCCCCC-CCCCCCCCEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 59878999959999999955677777-1556547589963989999-998789999999999999998888609999868 Q ss_pred HHHHHHHHHHH------------HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC Q ss_conf 99999976112------------220131--0451378764699805863114132799606423457889852078999 Q gi|254780828|r 92 ELAKDWRMDKY------------LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS 157 (190) Q Consensus 92 ~~~~~~~~~~y------------~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s 157 (190) .+++.++...+ .+++.. .+.+.|..+|++|..|+.|+..+.++.|+|||+.+++++||+.|+++|+ T Consensus 111 ~la~~ls~~~~~~~~~~~~~~~~~rP~~v~~ilaG~d~~gp~Ly~idp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s 190 (241) T 1iru_E 111 SVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMT 190 (241) T ss_dssp HHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCC T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCCEEEECEEEECCCHHHHHHHHHHHCCCCCC T ss_conf 89999999999984224454434456325899999948999899992898675306697668619999999976458989 Q ss_pred HHH---HHHHHHHHHHCCCEEECCCEEEEEEECCC Q ss_conf 899---99999997540110225956999994178 Q gi|254780828|r 158 AEE---IARKAMSIAADICVYTNHNIVLETLKVGD 189 (190) Q Consensus 158 a~e---la~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190) .+| ++.+||..+.++|. ++++|++.+|+.++ T Consensus 191 ~eeav~~a~~~L~~~~~~~~-~~~~iev~vi~~~~ 224 (241) T 1iru_E 191 LKEAIKSSLIILKQVMEEKL-NATNIELATVQPGQ 224 (241) T ss_dssp HHHHHHHHHHHHHHHCSSCC-CTTSEEEEEECSSS T ss_pred HHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCC T ss_conf 99999999999999874468-88968999998899 No 34 >1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 1g0u_F Probab=99.95 E-value=1.1e-26 Score=185.37 Aligned_cols=173 Identities=14% Similarity=0.031 Sum_probs=143.1 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHH Q ss_conf 3717999997997999813654505367744510579815975999731305889999999999999853--66563067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (190) +|||+|||+++||||||+|+|+++|..+ .++.+||++|+++++++ .+|..+|.+.+.+.++.++++++ .....++. T Consensus 29 ~G~t~Vgik~~dgVvlaad~~~~~~~~~-~~~~~Ki~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 106 (244) T 1ryp_G 29 NGTTSIGIKCNDGVVFAVEKLITSKLLV-PQKNVKIQVVDRHIGCV-YSGLIPDGRHLVNRGREEAASFKKLYKTPIPIP 106 (244) T ss_dssp TSCCEEEEEETTEEEEEEEEECCCTTBC-TTTSCCCEEETTTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCCC-CCCCCEEEEECCCEEEE-EECCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 5987899994999999995665667701-13345189976981589-843528799999999999999999719999889 Q ss_pred HHHHHHHHHHHHH-------HCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHH---HHCCCCCHH Q ss_conf 9999997611222-------0131--045137876469980586311413279960642345788985---207899989 Q gi|254780828|r 92 ELAKDWRMDKYLR-------NLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARA---LMSTQNSAE 159 (190) Q Consensus 92 ~~~~~~~~~~y~~-------~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~---~y~~~~sa~ 159 (190) .+++.++...+.+ ++.. .+.+.|.++|.+|..|+.|+..+.++.|+|+|+.+|+++||+ .|+++|+.+ T Consensus 107 ~la~~~~~~~~~~t~~~~~rP~~v~~iiaG~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Lek~~~~~~~~ms~e 186 (244) T 1ryp_G 107 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAR 186 (244) T ss_dssp HHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHH T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCEEEEECCCCCEECCCEEEECCCHHHHHHHHHHHHHCCCCCCCHH T ss_conf 99999999999850125667705899999972998889998498237713879988877999999986675279998999 Q ss_pred H---HHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf 9---9999999754011022595699999417 Q gi|254780828|r 160 E---IARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 160 e---la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) | ++.+||..+.+++.-++++++|.+++.. T Consensus 187 ea~~l~~~~l~~~~~~~~~~~~~~ev~iv~~~ 218 (244) T 1ryp_G 187 EAVKQAAKIIYLAHEDNKEKDFELEISWCSLS 218 (244) T ss_dssp HHHHHHHHHHHHHGGGGTTSCEEEEEEEEETT T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEE T ss_conf 99999999999997323688872899999997 No 35 >1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=99.95 E-value=4.4e-27 Score=187.84 Aligned_cols=174 Identities=15% Similarity=0.044 Sum_probs=143.0 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190) +|||+|||+++||||||+|+|++.+ ++.+++.+||++|++|++++ .+|.++|.+.+.+.++.++++++. ....++. T Consensus 32 ~G~T~Vgik~kdgVvlaad~~~~~~-~~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~r~~~~~~~~~~g~~~~v~ 109 (254) T 1iru_G 32 NSSTAIGIRCKDGVVFGVEKLVLSK-LYEEGSNKRLFNVDRHVGMA-VAGLLADARSLADIAREEASNFRSNFGYNIPLK 109 (254) T ss_dssp TSCCEEEEECSSBEEEEEEEECSCT-TBCTTTTCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH T ss_pred CCCCEEEEEECCEEEEEEECCCCCC-CCCCCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 6886899994999999996666677-71667455389812878999-878578899999999999999999858999999 Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCCHHH- Q ss_conf 99999976112-------220131--0451378-764699805863114132799606423457889852078999899- Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNSAEE- 160 (190) Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~sa~e- 160 (190) .+++.+....+ .+++.. .+.+.|. .+|.+|..|+.|+..+.++.|+|+|+.+|++.||+.|+++|+.+| T Consensus 110 ~la~~l~~~~~~~t~~~~~rP~~v~~llaG~D~~~gp~Ly~idp~G~~~~~~~~a~G~gs~~a~~~Lek~y~~~ms~eea 189 (254) T 1iru_G 110 HLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDI 189 (254) T ss_dssp HHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEEEECCCCCEEEECEEEECCCCHHHHHHHHHHCCCCCCHHHH T ss_conf 99999999999973533766765899999886999838999869976784078998686789999999744689999999 Q ss_pred --HHHHHHHHHHCCCEEECCCEEEEEEECCC Q ss_conf --99999997540110225956999994178 Q gi|254780828|r 161 --IARKAMSIAADICVYTNHNIVLETLKVGD 189 (190) Q Consensus 161 --la~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190) ++.+||..+.+.+.-++.++++.+|+.+. T Consensus 190 i~l~~~~l~~~~~~~~~~~~~iei~~v~~~~ 220 (254) T 1iru_G 190 VKEVAKIIYIVHDEVKDKAFELELSWVGELT 220 (254) T ss_dssp HHHHHHHHHHHSCSSSSCCEEEEEEECBTTT T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEEEECC T ss_conf 9999999999975235887358999999448 No 36 >1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3bdm_C* 1z7q_D 1fnt_D* 2zcy_C* 1g0u_C 1vsy_D ... Probab=99.95 E-value=1.6e-26 Score=184.29 Aligned_cols=172 Identities=14% Similarity=0.132 Sum_probs=136.6 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190) +|||+|||+++||||||+|+|++++.++.+++.+||++|++|++++ ++|.++|.+.+.+.++.++..++. ....++. T Consensus 27 ~G~tvIgik~~dgVvlaad~~~~~~~~~~~~~~~Ki~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 105 (241) T 1ryp_D 27 RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLS-FSGLNADSRILIEKARVEAQSHRLTLEDPVTVE 105 (241) T ss_dssp TSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCEEECCCCCCEEEECCCEEEE-EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 4986899995998999996465656641013511379827977999-532234099999999999999999739999999 Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECC--CCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCC---CCC Q ss_conf 99999976112-------220131--045137--8764699805863114132799606423457889852078---999 Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIAD--KTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMST---QNS 157 (190) Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~--~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~---~~s 157 (190) .+++.+....+ .+++.. .+.+.| .++|++|..|+.|+..+.++.|+|+|+.+|+++||+.|++ +|+ T Consensus 106 ~la~~l~~~~~~~~~~~~~rP~~v~~li~G~D~~~~gp~Ly~idp~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~t 185 (241) T 1ryp_D 106 YLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPAT 185 (241) T ss_dssp HHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCS T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCEEEEEECEEEECCCHHHHHHHHHHHCCCCCCCCC T ss_conf 99999999999863134557765059999984778997799995772897425799897889999999854164667888 Q ss_pred HHHHHH---HHHHHHHCCCEEECCCEEEEEEECCC Q ss_conf 899999---99997540110225956999994178 Q gi|254780828|r 158 AEEIAR---KAMSIAADICVYTNHNIVLETLKVGD 189 (190) Q Consensus 158 a~ela~---~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190) ++|+++ +||..+.++ ++.+|+|.+|+.+. T Consensus 186 ~~e~v~la~~al~~~~~~---~~~~iei~vi~~~~ 217 (241) T 1ryp_D 186 VEECVKLTVRSLLEVVQT---GAKNIEITVVKPDS 217 (241) T ss_dssp HHHHHHHHHHHHHHHHCS---CSTTEEEEEEETTT T ss_pred HHHHHHHHHHHHHHHHCC---CCCCEEEEEEECCC T ss_conf 999999999999997558---98817999998899 No 37 >3bdm_F Proteasome component C1; ubiquitin, proteolysis, pathogen, virulence factor, cytoplasm, hydrolase, nucleus, protease; HET: GDT; 2.70A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_G* 2zcy_F* 1z7q_G Probab=99.95 E-value=3.7e-26 Score=182.06 Aligned_cols=174 Identities=14% Similarity=0.050 Sum_probs=142.6 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHC--CCCCCCHH Q ss_conf 3717999997997999813654505367744510579815975999731305889999999999999853--66563067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYP--NQLLRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~--~~~~~~~~ 91 (190) +|||+|||+++||||||+|+|++++.++ .++.+||++|++|++++ .+|..+|++.+.+.++.++..++ .....++. T Consensus 32 ~G~t~Vgik~kdGVVlaadkr~~s~l~~-~~~~~KI~~I~~~i~~a-~sG~~aD~~~l~~~~r~e~~~~~~~~~~~i~~~ 109 (287) T 3bdm_F 32 NGTTSIGIKCNDGVVFAVEKLITSKLLV-PQKNVKIQVVDRHIGCV-YSGLIPDGRHLVNRGREEAASFKKLYKTPIPIP 109 (287) T ss_dssp TSCCEEEEEETTEEEEEEEEEECCTTBC-TTTSCCCEEETTTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCSCCCHH T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCCC-CCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHH T ss_conf 5987899994999999993665666610-03333289977980799-987568899999999999999899709989889 Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHH---HHCCCCCHH Q ss_conf 99999976112-------220131--045137876469980586311413279960642345788985---207899989 Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARA---LMSTQNSAE 159 (190) Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~---~y~~~~sa~ 159 (190) .+++.+....+ .+++.. .+.+.|.++|.+|..||.|+..+..+.|+|+|+++|+++||+ .|+++|+.+ T Consensus 110 ~la~~l~~~~~~~t~~~~~RPfgvs~liaG~D~~gp~Ly~iDpsG~~~~~~~~AiG~gs~~a~~~LEk~~~~~~~~ms~e 189 (287) T 3bdm_F 110 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAR 189 (287) T ss_dssp HHHHHHHHHHHHTTSCTTBCCCSEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHTCTTCCCHH T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCEEEEECCCEEEEEECEEEECCCHHHHHHHHHHHHHCCCCCCCHH T ss_conf 99999999998853203457658999999972998889998587558722869989888999999986665278998999 Q ss_pred H---HHHHHHHHHHCCCEEECCCEEEEEEECCC Q ss_conf 9---99999997540110225956999994178 Q gi|254780828|r 160 E---IARKAMSIAADICVYTNHNIVLETLKVGD 189 (190) Q Consensus 160 e---la~~Al~~A~erDvyTgd~i~i~~i~~~~ 189 (190) | ++.++|..+.+.+.-+..++++.+|..++ T Consensus 190 Eai~la~kaL~~~~d~~~~~~~~iev~~i~~~~ 222 (287) T 3bdm_F 190 EAVKQAAKIIYLAHEDNKEKDFELEISWCSLSE 222 (287) T ss_dssp HHHHHHHHHHHHHGGGSTTSEEEEEEEEEETTT T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEC T ss_conf 999999999999861336877627999999606 No 38 >1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=99.95 E-value=1.3e-26 Score=184.96 Aligned_cols=171 Identities=13% Similarity=0.035 Sum_probs=138.7 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190) +|||+|||+++||||||+|+|++++.. .+.+||++|++|++++ .+|.++|++.+.+.++.++.+++. ....++. T Consensus 31 ~G~t~Vgik~kdgVVlaad~r~~s~l~---~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 106 (263) T 1iru_F 31 QGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVDNHIGIS-IAGLTADARLLCNFMRQECLDSRFVFDRPLPVS 106 (263) T ss_dssp HSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH T ss_pred CCCCEEEEEECCEEEEEEECCCCCCCC---CCCCCEEEECCCEEEE-EEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 588789999699499999446666665---6511189946977999-777007589999999999999998628862188 Q ss_pred HHHHHHHHH--HH-----HHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCC--C--- Q ss_conf 999999761--12-----220131--045137876469980586311413279960642345788985207899--9--- Q gi|254780828|r 92 ELAKDWRMD--KY-----LRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQN--S--- 157 (190) Q Consensus 92 ~~~~~~~~~--~y-----~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~--s--- 157 (190) .+++.+... .| .+++.. .+.+.|..+|.+|..|+.|+..+..+.|+|+|+.+|+++||+.|+++| + T Consensus 107 ~la~~l~~~~~~~t~~~~~rP~~v~~ll~G~D~~gp~Ly~~Dp~Gs~~~~~~~aiG~g~~~a~~~Lek~~~~~~~~s~~e 186 (263) T 1iru_F 107 RLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNE 186 (263) T ss_dssp HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCCHHH T ss_conf 99998889999887750677740699999984898879998599988986559987874878999998742267899999 Q ss_pred HHHHHHHHHHHHHCCCE-EECCCEEEEEEECC Q ss_conf 89999999997540110-22595699999417 Q gi|254780828|r 158 AEEIARKAMSIAADICV-YTNHNIVLETLKVG 188 (190) Q Consensus 158 a~ela~~Al~~A~erDv-yTgd~i~i~~i~~~ 188 (190) +.+++.+||..|...|. .++++|+|.+|+.+ T Consensus 187 av~la~~aL~~~~~~~~~~~~~~iev~ii~k~ 218 (263) T 1iru_F 187 LVKHGLRALRETLPAEQDLTTKNVSIGIVGKD 218 (263) T ss_dssp HHHHHHHHHHTTSCTTCCCCTTTEEEEEEETT T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECC T ss_conf 99999999999864203568785699999569 No 39 >1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 1g0u_G 1fnt_A 1z7q_A 2zcy_G* ... Probab=99.95 E-value=2.5e-26 Score=183.05 Aligned_cols=173 Identities=13% Similarity=0.050 Sum_probs=139.9 Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCH Q ss_conf 637179999979979998136545053677445105798159759997313058899999999999998536--656306 Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSS 90 (190) Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~ 90 (190) -.|||+|||+++||||||+|+|++. .++.+++.+||++++++++++ ++|.++|.+.+.+.++.++.+++. ....++ T Consensus 28 ~~g~t~igi~~~dgVvlaad~r~~~-~~~~~~~~~Ki~~i~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 105 (243) T 1ryp_A 28 QTNINSLAVRGKDCTVVISQKKVPD-KLLDPTTVSYIFCISRTIGMV-VNGPIPDARNAALRAKAEAAEFRYKYGYDMPC 105 (243) T ss_dssp TTCCCEEEEECSSEEEEEEECCCCC-TTBCGGGCCSEEECSSSCEEE-EESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH T ss_pred CCCCCEEEEEECCEEEEEEECCCCC-CCCCCCCCCEEEEECCCEEEE-ECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 0696289999099999999766666-560467666389964887899-50667889999999999999999971999978 Q ss_pred HHHHHHHHHHH-------HHHHCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCC---- Q ss_conf 79999997611-------2220131--0451378-76469980586311413279960642345788985207899---- Q gi|254780828|r 91 VELAKDWRMDK-------YLRNLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQN---- 156 (190) Q Consensus 91 ~~~~~~~~~~~-------y~~~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~---- 156 (190) ..+++.+.... +.+++.. .+.+.|. .+|.+|..|+.|+..+.++.|+|||+.+++++||+.|+++| T Consensus 106 ~~la~~ls~~~~~~t~~~~~rP~~~~~ii~G~D~~~g~~ly~~D~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~ 185 (243) T 1ryp_A 106 DVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHI 185 (243) T ss_dssp HHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSC T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCEEEEECCCEEEEEECCEECCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 99999999999998643167887515799887179994699865875799735031575368999999997311443231 Q ss_pred ---C---HHHHHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf ---9---8999999999754011022595699999417 Q gi|254780828|r 157 ---S---AEEIARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 157 ---s---a~ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) + +.+++.+||..|.++|. ++++++|.+|+.+ T Consensus 186 ~~~t~~eai~la~~al~~~~~~d~-~~~~iev~ii~k~ 222 (243) T 1ryp_A 186 NEESWEKVVEFAITHMIDALGTEF-SKNDLEVGVATKD 222 (243) T ss_dssp CCSSHHHHHHHHHHHHHHHHTCCC-CTTSEEEEEEETT T ss_pred CCCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECC T ss_conf 020299999999999999861457-8896899999789 No 40 >3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} PDB: 3h6f_A 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D Probab=99.95 E-value=8.1e-26 Score=179.90 Aligned_cols=166 Identities=13% Similarity=0.048 Sum_probs=130.9 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC---CCCCH Q ss_conf 371799999799799981365450536774451057981597599973130588999999999999985366---56306 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPNQ---LLRSS 90 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~~---~~~~~ 90 (190) +|||+|||+++||||||+|+|.+ +.+||++|++|++++ .+|.++|++.+.+.++.++..++.. ...++ T Consensus 26 ~Gtt~vgik~kdGVVlaadkr~~--------s~~KI~~I~~~i~~~-~aG~~aD~~~l~~~~r~~a~~~~~~~~~~~i~~ 96 (248) T 3mi0_A 26 RAKSVVALAYAGGVLFVAENPSR--------SLQKISELYDRVGFA-AAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTG 96 (248) T ss_dssp TSCCEEEEEETTEEEEEEECCCS--------SSCSEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH T ss_pred CCCCEEEEEECCEEEEEECCCCC--------CCCCEEEECCCEEEE-EECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 58878999979989999776777--------723559965876899-704668899999999999999788609988779 Q ss_pred HHHHHHHHH------HHHHHHCCCEEE--EC----CCCCCEEEEECCCCCEE-CCCEEEEECCHHHHHHHHHHHHCCCCC Q ss_conf 799999976------112220131045--13----78764699805863114-132799606423457889852078999 Q gi|254780828|r 91 VELAKDWRM------DKYLRNLEAMIL--IA----DKTITLVITGMGDVLEP-ENGVMAIGSGGSYALSAARALMSTQNS 157 (190) Q Consensus 91 ~~~~~~~~~------~~y~~~~~~~~~--~~----~~~~~~~~~~d~~g~~~-~~~~~a~GSGs~~A~g~Le~~y~~~~s 157 (190) ..+++.+.. .++.+++...++ +. +.++|.+|..||+|+.. +..|.|+|+|++.|+++||+.|+++|+ T Consensus 97 ~~la~~~a~~l~~~~t~~~RPfgvslLiaG~d~~~~~~gp~Ly~~dpsGs~~~~~~~~a~G~gs~~a~~~Le~~y~~~mt 176 (248) T 3mi0_A 97 RQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENAS 176 (248) T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCC T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCEEECCCEEECCCCHHHHHHHHHHCCCCCCC T ss_conf 99999999999988762477725899999986778889977999888987230364466387569999999852679989 Q ss_pred HHH---HHHHHHHHHHCCCEEEC------CCEEEEEEECC Q ss_conf 899---99999997540110225------95699999417 Q gi|254780828|r 158 AEE---IARKAMSIAADICVYTN------HNIVLETLKVG 188 (190) Q Consensus 158 a~e---la~~Al~~A~erDvyTg------d~i~i~~i~~~ 188 (190) .+| ++.+||+.+.++|..++ ++++|.+++.+ T Consensus 177 ~eeai~la~~aL~~~~~~d~~~~~~~l~~~~vEvavv~~~ 216 (248) T 3mi0_A 177 LTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDAN 216 (248) T ss_dssp HHHHHHHHHHHHHHC------------CCTTEEEEEEETT T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECC T ss_conf 9999999999999984034677755467556389999778 No 41 >1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=99.94 E-value=5.2e-26 Score=181.10 Aligned_cols=173 Identities=16% Similarity=0.103 Sum_probs=140.7 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190) +|||+|||+++||||||+|+|++ +.++.+++.+||++|+++++++ .+|.++|.+.+.+.++.++.+++. ...+++. T Consensus 28 ~Gttvvgik~~dgVvlaad~r~~-~~l~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 105 (248) T 1iru_D 28 KGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALDDNVCMA-FAGLTADARIVINRARVECQSHRLTVEDPVTVE 105 (248) T ss_dssp TSCCEEEECCSSEEEEEECCCCC-CSSSCGGGGCSEEESSSSCEEE-EEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHH T ss_pred CCCCEEEEEECCEEEEEEECCCC-CCCCCCCCCCCEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 68878999979999999966666-7554677555189915987999-998578899999999999999998649984189 Q ss_pred HHHHHHHHHHH-------HHHCCC--EEEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCCCCC--HH Q ss_conf 99999976112-------220131--0451378-764699805863114132799606423457889852078999--89 Q gi|254780828|r 92 ELAKDWRMDKY-------LRNLEA--MILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQNS--AE 159 (190) Q Consensus 92 ~~~~~~~~~~y-------~~~~~~--~~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~~~s--a~ 159 (190) .+++.+....+ .+++.. .+.+.|. ++|.+|..|+.|+..+..+.|+|+|+.+|+++|++.|+++|+ .+ T Consensus 106 ~la~~i~~~~~~~t~~~~~rP~~v~~li~G~D~~~~p~Ly~idp~Gs~~~~~~~AiG~gs~~a~~~Le~~~~~~~~~~~~ 185 (248) T 1iru_D 106 YITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDD 185 (248) T ss_dssp HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEECCCEEEEECCEEEECCCHHHHHHHHHHHCCCCCCCCHH T ss_conf 99999999999986303878600799999983689846997579847996170877787589999999862467663599 Q ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf 99999999754011022595699999417 Q gi|254780828|r 160 EIARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 160 ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) ++++.|+.+-.+++.-++++|+|.+|..+ T Consensus 186 ~~i~~ai~al~~~~~~~~~~iei~ii~k~ 214 (248) T 1iru_D 186 LTIKLVIKALLEVVQSGGKNIELAVMRRD 214 (248) T ss_dssp HHHHHHHHHHHTTSCTTSTTCCEEEEESS T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECC T ss_conf 99999999999985279993899999779 No 42 >1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 Probab=99.94 E-value=1e-25 Score=179.25 Aligned_cols=173 Identities=15% Similarity=0.044 Sum_probs=136.4 Q ss_pred ECCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCH Q ss_conf 637179999979979998136545053677445105798159759997313058899999999999998536--656306 Q gi|254780828|r 13 MHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSS 90 (190) Q Consensus 13 ~~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~ 90 (190) ..|||+|||+++||||||+|+|++.+. +..++.+||++|++|++++ .+|.++|.+.+.+.++.++++++. ....++ T Consensus 34 ~gg~Tvigik~~dgVVlaad~r~~~~~-~~~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~v 111 (246) T 1iru_A 34 QGGLTSVAVRGKDCAVIVTQKKVPDKL-LDSSTVTHLFKITENIGCV-MTGMTADSRSQVQRARYEAANWKYKYGYEIPV 111 (246) T ss_dssp TTCCEEEEEECSSEEEEEEECCCCCSS-BCGGGCCSEEESSSSCEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH T ss_pred CCCCEEEEEEECCEEEEEEECCCCCCC-CCCCCCCEEEEECCCEEEE-EEECHHHHHHHHHHHHHHHHHHHHHCCCCCCH T ss_conf 389308999809999999966677767-1367556399935987999-76657899999999999999999971999877 Q ss_pred HHHHHHHHHH-------HHHHHCCCE--EEECCC-CCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHHCC--CCCH Q ss_conf 7999999761-------122201310--451378-764699805863114132799606423457889852078--9998 Q gi|254780828|r 91 VELAKDWRMD-------KYLRNLEAM--ILIADK-TITLVITGMGDVLEPENGVMAIGSGGSYALSAARALMST--QNSA 158 (190) Q Consensus 91 ~~~~~~~~~~-------~y~~~~~~~--~~~~~~-~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y~~--~~sa 158 (190) ..+++.+... ...+++... +.+.|. .+|.+|..|+.|+..+.++.|+|+|+.+|+++||+.|++ +|+. T Consensus 112 ~~la~~l~~~~~~~~~~~~~rP~~v~~il~G~D~~~gp~Ly~~dp~G~~~~~~~~A~G~gs~~~~~~Le~~~~~~~d~s~ 191 (246) T 1iru_A 112 DMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTF 191 (246) T ss_dssp HHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCH T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCH T ss_conf 99999999999998631577773789999987289895799870880689985999567769999999975364658999 Q ss_pred H---HHHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf 9---99999999754011022595699999417 Q gi|254780828|r 159 E---EIARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 159 ~---ela~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) + +++.+||..+.++|.- .++++|.+|+.+ T Consensus 192 eeai~la~~al~~~~~~d~~-~~~iei~vi~~~ 223 (246) T 1iru_A 192 EQTVETAITCLSTVLSIDFK-PSEIEVGVVTVE 223 (246) T ss_dssp HHHHHHHHHHHHHHTTCCCC-TTSEEEEEEETT T ss_pred HHHHHHHHHHHHHHHHCCCC-CCCEEEEEEEEC T ss_conf 99999999999999836788-686799999917 No 43 >1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3bdm_E* 1fnt_F 1z7q_F 1vsy_F* 2zcy_E* 3l5q_K ... Probab=99.94 E-value=2.7e-25 Score=176.60 Aligned_cols=171 Identities=13% Similarity=0.026 Sum_probs=140.5 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--CCCCCHH Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6563067 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--QLLRSSV 91 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (190) +|||+|||+++||||||+|+|.+... ..+.+||++|+++++++ ++|..+|.+.+.+.++.++++++. ....++. T Consensus 30 ~G~t~igi~~~dgvvla~d~~~~~~l---~~~~~KI~~I~~~i~~~-~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~ 105 (233) T 1ryp_F 30 QGSVTVGLRSNTHAVLVALKRNADEL---SSYQKKIIKCDEHMGLS-LAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVE 105 (233) T ss_dssp TSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHH T ss_pred CCCCEEEEEECCEEEEEEECCCCCCC---CCCCCEEEEECCCEEEE-EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCHH T ss_conf 58868999969959999953666667---76502489946982799-753537799999999999987566539978699 Q ss_pred HHHHHHHHHH-------HHHHCCC--EEEECCCCCCEEEEECCCCCEECCCEEEEECCHHHHHHHHHHHH----CCCCCH Q ss_conf 9999997611-------2220131--04513787646998058631141327996064234578898520----789998 Q gi|254780828|r 92 ELAKDWRMDK-------YLRNLEA--MILIADKTITLVITGMGDVLEPENGVMAIGSGGSYALSAARALM----STQNSA 158 (190) Q Consensus 92 ~~~~~~~~~~-------y~~~~~~--~~~~~~~~~~~~~~~d~~g~~~~~~~~a~GSGs~~A~g~Le~~y----~~~~sa 158 (190) .+++.++... ..+++.. .+.+.|.++|.+|..|+.|+..+.++.|+|+|+..|.++||+.| +++|+. T Consensus 106 ~la~~l~~~~~~~t~~~~~RP~gvs~liaG~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~~d~~~ 185 (233) T 1ryp_F 106 RAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNP 185 (233) T ss_dssp HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEECCCEEEEECCEEEECCCHHHHHHHHHHHHHHCCCCCCCH T ss_conf 99999999999986241577863059999982899879996488779942789988771889999999875057778999 Q ss_pred HH---HHHHHHHHHHCCCEEECCCEEEEEEECC Q ss_conf 99---9999999754011022595699999417 Q gi|254780828|r 159 EE---IARKAMSIAADICVYTNHNIVLETLKVG 188 (190) Q Consensus 159 ~e---la~~Al~~A~erDvyTgd~i~i~~i~~~ 188 (190) +| ++.+||..+.++|..+++++++.+|+.+ T Consensus 186 eeai~la~~~l~~~~~~d~~~~~~iei~ii~k~ 218 (233) T 1ryp_F 186 DELIKAGVEAISQSLRDESLTVDNLSIAIVGKD 218 (233) T ss_dssp HHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETT T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC T ss_conf 999999999999986315788983999999899 No 44 >1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A Probab=99.93 E-value=2.1e-24 Score=171.10 Aligned_cols=166 Identities=13% Similarity=0.009 Sum_probs=126.1 Q ss_pred CCEEEEEEEECCEEEEEECCCCCCCCEEEECCCEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCC--C-CCCCH Q ss_conf 37179999979979998136545053677445105798159759997313058899999999999998536--6-56306 Q gi|254780828|r 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLERLEKKLEQYPN--Q-LLRSS 90 (190) Q Consensus 14 ~GTTivgi~~~dgVviAaDtR~S~G~~v~sr~~~KI~~i~d~~~~~g~ag~a~d~~~~~~~~~~~~~~~~~--~-~~~~~ 90 (190) +|||+|||+++||||||+|+|.++ .+||++|+||++++ ++|.++|++.+.+.++.++..++. . ...+. T Consensus 26 ~GtT~Vgi~~~dGVvlaad~r~~s--------~~KI~~I~d~i~~~-~aG~~aD~~~l~~~~r~ea~~~~~~~~~~~~~~ 96 (259) T 1q5q_A 26 RGRSVVVLTFRDGVLFVAENPSTA--------LHKVSELYDRLGFA-AVGKYNEFENLRRAGIVHADMRGYSYDRRDVTG 96 (259) T ss_dssp TSCCEEEEECSSEEEEEECCSCSS--------SCSEEEEETTEEEE-EEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH T ss_pred CCCCEEEEEECCEEEEEEECCCCC--------CCCEEEECCCEEEE-EECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCH T ss_conf 688789999799799998037776--------46369974866899-704489999999999999999898638899869 Q ss_pred HHHHHHHHH------HHHHHHCCCEE--EECC----CCCCEEEEECCCCCEE-CCCEEEEECCHHHHHHHHHHHHCCCCC Q ss_conf 799999976------11222013104--5137----8764699805863114-132799606423457889852078999 Q gi|254780828|r 91 VELAKDWRM------DKYLRNLEAMI--LIAD----KTITLVITGMGDVLEP-ENGVMAIGSGGSYALSAARALMSTQNS 157 (190) Q Consensus 91 ~~~~~~~~~------~~y~~~~~~~~--~~~~----~~~~~~~~~d~~g~~~-~~~~~a~GSGs~~A~g~Le~~y~~~~s 157 (190) ..+++.... ....+++...+ .++| ..+|.+|..|++|+.. +..|.++|||+++|.++||+.|+++|+ T Consensus 97 ~~la~~~a~~~~~~~~~~~rP~gv~~LvaG~D~~g~~~gp~Ly~vdpsG~~~~~~~~~a~G~~s~~a~~~Le~~y~~~ms 176 (259) T 1q5q_A 97 RSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLD 176 (259) T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCC T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC T ss_conf 99999999999999853688855999999975778878875899889998512122103787609999999986346999 Q ss_pred HHH---HHHHHHHHHHCCCE----EECCCEEEEEEECC Q ss_conf 899---99999997540110----22595699999417 Q gi|254780828|r 158 AEE---IARKAMSIAADICV----YTNHNIVLETLKVG 188 (190) Q Consensus 158 a~e---la~~Al~~A~erDv----yTgd~i~i~~i~~~ 188 (190) .+| ++.+||+.+.+.|. .+.++++|.+++.+ T Consensus 177 ~eea~~lai~aL~~~~~~~~~~~~l~~~~ieVavv~~~ 214 (259) T 1q5q_A 177 LEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQS 214 (259) T ss_dssp HHHHHHHHHHHHTTCC--------CCSSCSEEEEEETT T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECC T ss_conf 99999999999999732567757567342899999668 No 45 >1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination, helicase; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A Probab=34.19 E-value=20 Score=14.81 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=28.7 Q ss_pred EEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 99606423457889852078999899999999975 Q gi|254780828|r 135 MAIGSGGSYALSAARALMSTQNSAEEIARKAMSIA 169 (190) Q Consensus 135 ~a~GSGs~~A~g~Le~~y~~~~sa~ela~~Al~~A 169 (190) .+-|.-..-|..++.+..+++++.+++.++||+.+ T Consensus 168 ~~LGy~~~ea~~ai~~~~~~~~~~e~lik~aLk~~ 202 (203) T 1cuk_A 168 VALGYKPQEASRMVSKIARPDASSETLIREALRAA 202 (203) T ss_dssp HHHTCCHHHHHHHHHHSCCSSCCHHHHHHHHHHTT T ss_pred HHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH T ss_conf 98799999999999986168999999999999971 No 46 >2pk0_A Serine/threonine protein phosphatase STP1; signaling motif, signaling protein; 2.65A {Streptococcus agalactiae A909} Probab=24.87 E-value=29 Score=13.80 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=25.7 Q ss_pred CCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCC Q ss_conf 78999899999999975401102259569999941789 Q gi|254780828|r 153 STQNSAEEIARKAMSIAADICVYTNHNIVLETLKVGDE 190 (190) Q Consensus 153 ~~~~sa~ela~~Al~~A~erDvyTgd~i~i~~i~~~~~ 190 (190) +...++++++++-+..|-++- +-||+++..|+.++| T Consensus 213 ~~~~~~~~~a~~L~~~A~~~g--~~DNiT~ivi~v~~~ 248 (250) T 2pk0_A 213 TQEKTLDDKNQDLITLANHRG--GLDNITVALVYVESE 248 (250) T ss_dssp TSSSCHHHHHHHHHHHHHHTT--CCSCEEEEEEEECC- T ss_pred HCCCCHHHHHHHHHHHHHHCC--CCCCEEEEEEEEECC T ss_conf 559999999999999999739--999879999998157 No 47 >3bb7_A Interpain A; cysteine protease, zymogen activation, bacterial odontopathogen, hydrolase; 1.50A {Prevotella intermedia} PDB: 3bba_A Probab=20.48 E-value=29 Score=13.86 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=13.6 Q ss_pred EEEECCEEEEEECCCCCC Q ss_conf 999799799981365450 Q gi|254780828|r 20 TVRKDGVVVIAGDGQVSL 37 (190) Q Consensus 20 gi~~~dgVviAaDtR~S~ 37 (190) -..-+|+||++||.|+.. T Consensus 17 n~~~~GfvIVsaD~r~~p 34 (321) T 3bb7_A 17 GYTDGGFAVISADDLAPE 34 (321) T ss_dssp EETTSCEEEECCCTTSCS T ss_pred ECCCCEEEEEECCCCCCC T ss_conf 658987999976888777 No 48 >1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A {Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A* Probab=20.00 E-value=37 Score=13.19 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=14.3 Q ss_pred EEEEEECCEEEEEECCCCCC Q ss_conf 99999799799981365450 Q gi|254780828|r 18 ILTVRKDGVVVIAGDGQVSL 37 (190) Q Consensus 18 ivgi~~~dgVviAaDtR~S~ 37 (190) |+-+.-+++||++||.|+.. T Consensus 53 I~N~~~~GfvIVsaD~r~~p 72 (371) T 1dki_A 53 VYNISTGGFVIVSGDKRSPE 72 (371) T ss_dssp EEC----CEEEEESCTTSCS T ss_pred EEEECCCCEEEEECCCCCCC T ss_conf 99938982899978888677 Done!