PSIBLAST alignment of GI: 254780828 and protein with PDB id: 1g0u
gi|11514003|pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle Length = 241
>gi|11514017|pdb|1G0U|Z Chain Z, A Gated Channel Into The Proteasome Core Particle Length = 241
>gi|178847471|pdb|2ZCY|L Chain L, Yeast 20s Proteasome:syringolin A-Complex Length = 241
>gi|178847485|pdb|2ZCY|Z Chain Z, Yeast 20s Proteasome:syringolin A-Complex Length = 241
>gi|178847513|pdb|3BDM|L Chain L, Yeast 20s Proteasome:glidobactin A-Complex Length = 241
>gi|178847527|pdb|3BDM|Z Chain Z, Yeast 20s Proteasome:glidobactin A-Complex Length = 241
>gi|323462947|pdb|3NZJ|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With Ligand 2a Length = 241
Score = 73.1 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/212 (13%), Positives = 63/212 (29%), Gaps = 30/212 (14%)
Query: 6 DKHYAVKMHATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSS 65
+ + TIL + + V+AGD + ++ KV G +++ G +
Sbjct: 19 HQFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSA-NGFA 77
Query: 66 ADAFTLLERLEKKLEQYPNQLL------RSSVELAKDWRMDKYLRNLEAMILIADKTITL 119
AD L++R + ++ Y S+ + K +IA
Sbjct: 78 ADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDG 137
Query: 120 ---VITGMGDVLEPENGVMAIGSGGSYALSAARALMSTQ-----------------NSAE 159
V + A G+ S + ++ + S E
Sbjct: 138 KGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVE 197
Query: 160 E---IARKAMSIAADICVYTNHNIVLETLKVG 188
E + R + + A + + + + +
Sbjct: 198 EVIKLVRDSFTSATERHIQVGDGLEILIVTKD 229