PSIBLAST alignment of GI: 254780828 and protein with PDB id: 1q5r
>gi|40889405|pdb|1Q5R|H Chain H, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides Length = 294
>gi|40889406|pdb|1Q5R|I Chain I, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides Length = 294
Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats.
Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 22/186 (11%)
Query: 14 HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLE 73
H TTI+ + G V++AGD + + G + + V + + AG AG++ A L+
Sbjct: 64 HGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSA-AGIAGTAGIAIELVR 122
Query: 74 RLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLVITGM--------- 124
+LE Y K R+ +R + + L++
Sbjct: 123 LFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRA 182
Query: 125 ---------GDVLEPENGVMAIGSGGSYALSAARALMSTQ---NSAEEIARKAMSIAADI 172
G E G A+GSG +A SA + + S +A A +++ AAD
Sbjct: 183 GRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADD 242
Query: 173 CVYTNH 178
T
Sbjct: 243 DSATGG 248