PSIBLAST alignment of GI: 254780828 and protein with PDB id: 1q5r

>gi|40889405|pdb|1Q5R|H Chain H, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides Length = 294
>gi|40889406|pdb|1Q5R|I Chain I, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides Length = 294
 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/186 (22%), Positives = 69/186 (37%), Gaps = 22/186 (11%)

Query: 14  HATTILTVRKDGVVVIAGDGQVSLGQTVMKANARKVRRLGKGNIIAGFAGSSADAFTLLE 73
           H TTI+ +   G V++AGD + + G  +   +   V    + +  AG AG++  A  L+ 
Sbjct: 64  HGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSA-AGIAGTAGIAIELVR 122

Query: 74  RLEKKLEQYPNQLLRSSVELAKDWRMDKYLRNLEAMILIADKTITLVITGM--------- 124
               +LE Y            K  R+   +R      +     + L++            
Sbjct: 123 LFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRA 182

Query: 125 ---------GDVLEPENGVMAIGSGGSYALSAARALMSTQ---NSAEEIARKAMSIAADI 172
                    G   E   G  A+GSG  +A SA + + S      +A   A +++  AAD 
Sbjct: 183 GRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADD 242

Query: 173 CVYTNH 178
              T  
Sbjct: 243 DSATGG 248