HHsearch alignment for GI: 254780829 and conserved domain: CHL00095
>CHL00095 clpC Clp protease ATP binding subunit.
Probab=99.98 E-value=1.3e-31 Score=224.46 Aligned_cols=284 Identities=23% Similarity=0.308 Sum_probs=177.4
Q ss_pred HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEE
Q ss_conf 999998620304868999999999987788640864444665668-66996798886899999999970---78779714
Q gi|254780829|r 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLA---GAPFIKVE 85 (437)
Q Consensus 10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l---~VPF~~~d 85 (437)
T Consensus 501 ~~le~~L~~~ViGQd~AI~~vs~ai~----rsr--aGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~D 574 (823)
T CHL00095 501 IHMEETLHKRIIGQDEAVVAVSKAIR----RAR--VGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLD 574 (823)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 87888787784076999999999999----997--089989997468998789988779999999999747820258853
Q ss_pred CCCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 341012-----------122343101346788876521278998565498888688875555311432110046689889
Q gi|254780829|r 86 VTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154 (437)
Q Consensus 86 aT~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (437)
T Consensus 575 MSEy~E~hsvsrLIGaPPGYVGy~eGG~LTe-------aVrr~PysVv----LfDEIEK---------AHpdV~nilLQv 634 (823)
T CHL00095 575 MSEYMEKHTVSKLIGSPPGYVGYNEGGQLTE-------AVRKKPYTVV----LFDEIEK---------AHPDIFNLLLQI 634 (823)
T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCHHH-------HHHCCCCEEE----EECHHHH---------CCHHHHHHHHHH
T ss_conf 5101554207674589987667787882019-------8871998699----8621311---------388999988765
Q ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 86168888549987535545544334667666321000110100135432210000010235533278886303101112
Q gi|254780829|r 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 (437)
Q Consensus 155 l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (437)
T Consensus 635 lDdG~LtD~~Gr~-------------------vdF~NtIIImTSNlG-------------------s~~i~~~------- 669 (823)
T CHL00095 635 LDDGRLTDSKGRT-------------------IDFKNTLIIMTSNLG-------------------SKVIEKG------- 669 (823)
T ss_pred CCCCCCCCCCCCE-------------------EECEEEEEEECCCCC-------------------HHHHHHC-------
T ss_conf 1688434899998-------------------843103999716505-------------------5888741-------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 36788875322210022210013576656543321012234320466522112466642024664016754221121255
Q gi|254780829|r 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP 314 (437)
Q Consensus 235 ~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glip 314 (437)
T Consensus 670 --------~~~~gf~~~~~------~~~~~~~~~~~~~~~v--------------------~~~l---------~~~F~P 706 (823)
T CHL00095 670 --------GGSLGFKLLED------GTKLDEKQYKRLSNLV--------------------NEEL---------KQYFRP 706 (823)
T ss_pred --------CCCCCCCCCCC------CCCCCHHHHHHHHHHH--------------------HHHH---------HHHCCH
T ss_conf --------34434333445------4322023589999999--------------------9999---------843798
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 43345126886155424678887643468899999999875196899842499999999998404001237246799999
Q gi|254780829|r 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 (437)
Q Consensus 315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E 394 (437)
T Consensus 707 EFlnRiDeii~F~~L~~~~l~~Iv~~----~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~-----~~~GARpl~R~I~ 777 (823)
T CHL00095 707 EFLNRLDEIIVFRPLTKDEVWEIAEI----MLKELFKRLNNQGIQLEVDERFKTLLAKEGYN-----PLYGARPLRRAIM 777 (823)
T ss_pred HHHHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCC-----CCCCCHHHHHHHH
T ss_conf 78732782786189999999999999----99999999996898599888999999995879-----7768136889999
Q ss_pred HHHHHHHCCC----CCCCCCEEEECH
Q ss_conf 9867762127----568776899859
Q gi|254780829|r 395 RVLEDISFSA----SDLQEKTVVIDA 416 (437)
Q Consensus 395 ~~l~d~~fe~----p~~~~~~v~Id~ 416 (437)
T Consensus 778 ~~i~~~ls~~il~g~~~~g~~v~v~~ 803 (823)
T CHL00095 778 RLLEDPLAEEVLSFKIKPGDSLVVDV 803 (823)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 99889999999748889969899997