HHsearch alignment for GI: 254780829 and conserved domain: COG0542

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].

Probab=97.06  E-value=0.0012  Score=42.98  Aligned_cols=99  Identities=24%  Similarity=0.322  Sum_probs=54.1

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEE--------CCCCCCCHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf             66866996798886899999999970---78779714341012--------12234310134678887652127899-85
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE--------IGYVGRNVEQIIRDLVDVAINIVRES-RR  119 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE--------~gyvG~DVes~i~~l~~~a~~~~~~a-~~  119 (437)
T Consensus       190 ~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRl-k~vl~e----v~~~~~v  264 (786)
T COG0542         190 TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERL-KAVLKE----VEKSKNV  264 (786)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHHHHHCCCCCCCCHHHHH-HHHHHH----HHCCCCE
T ss_conf             88998476689888999998999997469999787588799714876746465357389999-999999----8517984


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             65498888688875555311432110046689889861688
Q gi|254780829|r  120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI  160 (437)
Q Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (437)
T Consensus       265 ILFIDEi-----HtiVGAG~~~g~a~DAaNiLKPaLARGeL  300 (786)
T COG0542         265 ILFIDEI-----HTIVGAGATEGGAMDAANLLKPALARGEL  300 (786)
T ss_pred             EEEEECH-----HHHCCCCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf             9998235-----54057776666651256646778745873