HHsearch alignment for GI: 254780829 and conserved domain: COG1220
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=0 Score=803.79 Aligned_cols=432 Identities=59% Similarity=0.934 Sum_probs=410.1
Q ss_pred CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 76888999998620304868999999999987788640864444665668669967988868999999999707877971
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
T Consensus 2 ~~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 2 SEMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 98887999999876740717778899999998999975478776225755358888888768899999999848983788
Q ss_pred ECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----------CCCHHHHHHHH
Q ss_conf 4341012122343101346788876521278998565498888688875555311432-----------11004668988
Q gi|254780829|r 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKT-----------ATSNTREVFRK 153 (437)
Q Consensus 85 daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 153 (437)
T Consensus 82 EATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rk 161 (444)
T COG1220 82 EATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRK 161 (444)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 76421340325645899999999999999999999999999999999999998669875546667300002679999999
Q ss_pred HHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 98616888854998753554554433466766632100011010013543221000001023553327888630310111
Q gi|254780829|r 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 (437)
Q Consensus 154 ~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (437)
T Consensus 162 kLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~-kkkkrk~~Vk~A~~~L~~eea~KLid~e~i 240 (444)
T COG1220 162 KLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGK-KKKKRKLKVKEAKKLLIEEEADKLIDQEEI 240 (444)
T ss_pred HHHCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEEEHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 9975887761799997226787534689985789999999999864688-730366569999998777788762699999
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 23678887532221002221001357665654332101223432046652211246664202466401675422112125
Q gi|254780829|r 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313 (437)
Q Consensus 234 ~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~gli 313 (437)
T Consensus 241 ~~eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLi 320 (444)
T COG1220 241 KQEAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLI 320 (444)
T ss_pred HHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCEECCCHHHCC
T ss_conf 99999998856908973466787437889988664320102103105754431544401443788714820037813217
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 54334512688615542467888764346889999999987519689984249999999999840400123724679999
Q gi|254780829|r 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 (437)
Q Consensus 314 pE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~ 393 (437)
T Consensus 321 PELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvl 400 (444)
T COG1220 321 PELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVL 400 (444)
T ss_pred HHHCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 66627773488704489989999963760789999999973158348853799999999999855430001178899999
Q ss_pred HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99867762127568776899859999989999985213454129
Q gi|254780829|r 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 (437)
Q Consensus 394 E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~l~e~~Dls~~~l 437 (437)
T Consensus 401 ErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l~~n~DLsryIL 444 (444)
T COG1220 401 ERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDLVANEDLSRFIL 444 (444)
T ss_pred HHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCHHHHHC
T ss_conf 99998707058778997589758999999987751741565419