HHsearch alignment for GI: 254780829 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=99.92 E-value=3.2e-26 Score=189.44 Aligned_cols=211 Identities=15% Similarity=0.085 Sum_probs=172.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~ 131 (437)
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK-YiGE----GaRlVRelF~lArekaPsIIFiDEIDAIg~ 258 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK-YIGE----GARLVRELFELAREKAPSIIFIDEIDAIGA 258 (406)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHH-HHCC----CHHHHHHHHHHHHHCCCEEEEEECHHHHHC
T ss_conf 99712766899975889999987205866999421999999-8341----169999999987414984999831122311
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf 75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 (437)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
T Consensus 259 kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPA--LLRPGR~DRkIEfplPd~~gR~~Il~IHtr 336 (406)
T COG1222 259 KRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPA--LLRPGRFDRKIEFPLPDEEGRAEILKIHTR 336 (406)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH--HCCCCCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 113688885099999999999860588978876899855885555766--508875453011689897899999998762
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCC
Q ss_conf 1023553327888630310111236788875322210022210013576656543321
Q gi|254780829|r 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 (437)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~ 269 (437)
T Consensus 337 kM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 337 KMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHH
T ss_conf 1467667699999875389956779999998759999860473339999999999972