HHsearch alignment for GI: 254780829 and conserved domain: COG1224

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=99.04  E-value=5.3e-10  Score=84.26  Aligned_cols=72  Identities=28%  Similarity=0.479  Sum_probs=55.6

Q ss_pred             CCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCCEEE
Q ss_conf             688899999862030486899999999998778864086444466566866996798886899999999970--787797
Q gi|254780829|r    6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA--GAPFIK   83 (437)
Q Consensus         6 ~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l--~VPF~~   83 (437)
T Consensus        31 ng~~k~~~----dG~VGQ~~AReAaGvIv----~mik~gk-----~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~   97 (450)
T COG1224          31 NGKAKFIG----DGLVGQEEAREAAGVIV----KMIKQGK-----MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA   97 (450)
T ss_pred             CCCEEECC----CCCCCHHHHHHHHHHHH----HHHHHCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf             89874768----86112498887625999----9997176-----66617999789997688999999998589998215


Q ss_pred             EECCCEE
Q ss_conf             1434101
Q gi|254780829|r   84 VEVTKFT   90 (437)
Q Consensus        84 ~daT~ft   90 (437)
T Consensus        98 isgsEiY  104 (450)
T COG1224          98 ISGSEIY  104 (450)
T ss_pred             ECCCEEE
T ss_conf             0133223