HHsearch alignment for GI: 254780829 and conserved domain: COG1224
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription].
Probab=99.04 E-value=5.3e-10 Score=84.26 Aligned_cols=72 Identities=28% Similarity=0.479 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCCEEE
Q ss_conf 688899999862030486899999999998778864086444466566866996798886899999999970--787797
Q gi|254780829|r 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA--GAPFIK 83 (437)
Q Consensus 6 ~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l--~VPF~~ 83 (437)
T Consensus 31 ng~~k~~~----dG~VGQ~~AReAaGvIv----~mik~gk-----~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 31 NGKAKFIG----DGLVGQEEAREAAGVIV----KMIKQGK-----MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred CCCEEECC----CCCCCHHHHHHHHHHHH----HHHHHCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 89874768----86112498887625999----9997176-----66617999789997688999999998589998215
Q ss_pred EECCCEE
Q ss_conf 1434101
Q gi|254780829|r 84 VEVTKFT 90 (437)
Q Consensus 84 ~daT~ft 90 (437)
T Consensus 98 isgsEiY 104 (450)
T COG1224 98 ISGSEIY 104 (450)
T ss_pred ECCCEEE
T ss_conf 0133223