HHsearch alignment for GI: 254780829 and conserved domain: COG1485

Probab=95.19  E-value=0.16  Score=29.32  Aligned_cols=74  Identities=26%  Similarity=0.148  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHHHHCEECH-HHHHHHHHHHHHHHHH-----HHCCC---C-CCCCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf             688899999862030486-8999999999987788-----64086---4-444665668669967988868999999999
Q gi|254780829|r    6 NFSPREIVSELDRYIIGQ-QDAKRAVAIALRNRWR-----RQQLP---A-DLRDELMPKNILLVGPTGVGKTAISRRLAR   75 (437)
Q Consensus         6 ~ltP~~i~~~Ld~~VvGQ-~~AKk~lavav~nhy~-----R~~~~---~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~   75 (437)
T Consensus         8 ~~sp~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~   87 (367)
T COG1485           8 TMSPVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYE   87 (367)
T ss_pred             CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             77989999975056778888678999999999999862644455521110036888883588889978649999999986


Q ss_pred             HHCC
Q ss_conf             7078
Q gi|254780829|r   76 LAGA   79 (437)
Q Consensus        76 ~l~V   79 (437)
T Consensus        88 ~lp~   91 (367)
T COG1485          88 SLPG   91 (367)
T ss_pred             HCCC
T ss_conf             5876