HHsearch alignment for GI: 254780829 and conserved domain: COG2255

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].

Probab=99.17  E-value=2.6e-10  Score=86.25  Aligned_cols=77  Identities=26%  Similarity=0.497  Sum_probs=60.2

Q ss_pred             CCCCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             76768889999986203048689999999999877886408644446656686699679888689999999997078779
Q gi|254780829|r    3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI   82 (437)
Q Consensus         3 ~~~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~   82 (437)
T Consensus        16 ~e~~lRP~----~l~ef-iGQ~~vk~~L~ifI~AAk~r~e---------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k   81 (332)
T COG2255          16 IERSLRPK----TLDEF-IGQEKVKEQLQIFIKAAKKRGE---------ALDHVLLFGPPGLGKTTLAHIIANELGVNLK   81 (332)
T ss_pred             HHHCCCCC----CHHHH-CCHHHHHHHHHHHHHHHHHCCC---------CCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             43035865----48885-1839999999999999984498---------7674786479987688899999998567737


Q ss_pred             EEECCCEEECC
Q ss_conf             71434101212
Q gi|254780829|r   83 KVEVTKFTEIG   93 (437)
Q Consensus        83 ~~daT~ftE~g   93 (437)
T Consensus        82 ~tsGp~leK~g   92 (332)
T COG2255          82 ITSGPALEKPG   92 (332)
T ss_pred             ECCCCCCCCHH
T ss_conf             63662015726