HHsearch alignment for GI: 254780829 and conserved domain: COG3604

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=97.52  E-value=0.00017  Score=48.48  Aligned_cols=62  Identities=27%  Similarity=0.471  Sum_probs=48.3

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970---787797143410121
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI   92 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~   92 (437)
T Consensus       224 ~iIG~S~am~~ll~~i~----~VA--------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes  288 (550)
T COG3604         224 GIIGRSPAMRQLLKEIE----VVA--------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES  288 (550)
T ss_pred             CCCCCCHHHHHHHHHHH----HHH--------CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHH
T ss_conf             62306999999999999----872--------689807984588853899999998737555798666312225378