HHsearch alignment for GI: 254780829 and conserved domain: COG3604
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms].
Probab=97.52 E-value=0.00017 Score=48.48 Aligned_cols=62 Identities=27% Similarity=0.471 Sum_probs=48.3
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970---787797143410121
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI 92 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~ 92 (437)
T Consensus 224 ~iIG~S~am~~ll~~i~----~VA--------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 224 GIIGRSPAMRQLLKEIE----VVA--------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred CCCCCCHHHHHHHHHHH----HHH--------CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHH
T ss_conf 62306999999999999----872--------689807984588853899999998737555798666312225378