HHsearch alignment for GI: 254780829 and conserved domain: KOG0742
>KOG0742 consensus.
Probab=98.60 E-value=3.3e-07 Score=66.11 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=69.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 866996798886899999999970787797143410121223431013467888765212789-9856549888868887
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEE 132 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~-a~~~i~~~~~~~~~~~ 132 (437)
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG---~qaVTkiH~lF---DWakkS~rGLllFIDEADAFLce 458 (630)
T KOG0742 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG---AQAVTKIHKLF---DWAKKSRRGLLLFIDEADAFLCE 458 (630)
T ss_pred HHEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCCCCCH---HHHHHHHHHHH---HHHHHCCCCEEEEEHHHHHHHHH
T ss_conf 4003247999860499999988528741001378755521---78899999987---88751566449986116789987
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEE-EEECCCCC
Q ss_conf 5555311432110046689889861688885499-87535545
Q gi|254780829|r 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEID-IEVADTSS 174 (437)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~-i~~~~~~~ 174 (437)
T Consensus 459 Rnk-----tymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742 459 RNK-----TYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred HCC-----CCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 520-----10258899999889876256554268996058832