HHsearch alignment for GI: 254780829 and conserved domain: PRK05022

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional.

Probab=97.98  E-value=1.3e-05  Score=55.76  Aligned_cols=62  Identities=26%  Similarity=0.409  Sum_probs=46.5

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCEEEC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997---0787797143410121
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL---AGAPFIKVEVTKFTEI   92 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~---l~VPF~~~daT~ftE~   92 (437)
T Consensus       187 elIG~S~~m~~l~~~i----~~vA--------~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~  251 (510)
T PRK05022        187 EMIGQSPAMQQLKKEI----EVVA--------ASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPES  251 (510)
T ss_pred             CEEECCHHHHHHHHHH----HHHH--------CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
T ss_conf             7520899999999999----9996--------899988988989813999999999668878998578889999856