HHsearch alignment for GI: 254780829 and conserved domain: PRK05342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=100.00 E-value=0 Score=692.86 Aligned_cols=343 Identities=29% Similarity=0.396 Sum_probs=282.5
Q ss_pred CCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 8889999986203048689999999999877886408644--44665668669967988868999999999707877971
Q gi|254780829|r 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 7 ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~--~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
T Consensus 61 p~P~eI~~~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~ia 140 (411)
T PRK05342 61 PTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAIA 140 (411)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 99799999862140284888899999999999998602133566521345389989999778899999999869998998
Q ss_pred ECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 43410121223431013467888765212789985654988886888755553114321100466898898616888854
Q gi|254780829|r 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164 (437)
Q Consensus 85 daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (437)
T Consensus 141 DAT~lTEaGYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~--~~s~trDVSgEGVQqaLLkiiEGt~v~ 218 (411)
T PRK05342 141 DATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSE--NPSITRDVSGEGVQQALLKILEGTVAS 218 (411)
T ss_pred EECEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHCCCEEC
T ss_conf 612001267456079999999999828889988368288850234542478--888877765124899999987587141
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99875355455443346676663210001101001354322100000102355332788863031011123678887532
Q gi|254780829|r 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 (437)
Q Consensus 165 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 244 (437)
T Consensus 219 vp~----~---------------gg---rkhp~~~~~~idT~nILFI~gGAF~GL~~II~~R~~---------------- 260 (411)
T PRK05342 219 VPP----Q---------------GG---RKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLG---------------- 260 (411)
T ss_pred CCC----C---------------CC---CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCC----------------
T ss_conf 188----8---------------77---778776516761471799911553358999986357----------------
Q ss_pred HHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 22100222100135766565433210122343204665221124666420246640167542211212554334512688
Q gi|254780829|r 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324 (437)
Q Consensus 245 ~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v 324 (437)
T Consensus 261 ----------------~~~iGF~~~~~~~-----------------~~~~~~~~l~~v~p~DLi~fGlIPEfiGRlPViv 307 (411)
T PRK05342 261 ----------------KSGIGFGAEVKSK-----------------DEKDLGELLAQVEPEDLVKFGLIPEFIGRLPVVA 307 (411)
T ss_pred ----------------CCCCCCCCCCCCC-----------------CCCCHHHHHHHCCHHHHHHCCCCHHHHCCCCEEE
T ss_conf ----------------8876778876641-----------------1000567876279878887388377614664054
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 61554246788876434688999999998751968998424999999999984040012372467999999867762127
Q gi|254780829|r 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 (437)
Q Consensus 325 ~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe~ 404 (437)
T Consensus 308 ~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~t-----GARgLRsIlE~iLld~MFel 382 (411)
T PRK05342 308 TLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKT-----GARGLRSILEEVLLDVMFEL 382 (411)
T ss_pred ECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHCCC
T ss_conf 6244799999999658741599999999975496799868999999999998475-----74577999999978875448
Q ss_pred CCC-CCCEEEECHHHHHHHHHHHH
Q ss_conf 568-77689985999998999998
Q gi|254780829|r 405 SDL-QEKTVVIDAEYVRLHIGDFP 427 (437)
Q Consensus 405 p~~-~~~~v~Id~~~V~~~l~~l~ 427 (437)
T Consensus 383 Ps~~~v~~v~It~~~V~~~~~P~~ 406 (411)
T PRK05342 383 PSREDVEKVVITEEVVEGKSKPLL 406 (411)
T ss_pred CCCCCCCEEEECHHHHCCCCCCEE
T ss_conf 898997099988799779998269