HHsearch alignment for GI: 254780829 and conserved domain: PRK06526
>PRK06526 transposase; Provisional.
Probab=98.15 E-value=1.9e-06 Score=61.16 Aligned_cols=40 Identities=25% Similarity=0.460 Sum_probs=29.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEE
Q ss_conf 66866996798886899999999970---78779714341012
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE 91 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE 91 (437)
T Consensus 97 ~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~ 139 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA 139 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
T ss_conf 5887899899998689999999999998699679987799999