HHsearch alignment for GI: 254780829 and conserved domain: PRK08181
>PRK08181 transposase; Validated.
Probab=98.18 E-value=1.5e-06 Score=61.92 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=29.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf 66866996798886899999999970---787797143410121
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI 92 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~ 92 (437)
T Consensus 105 ~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~ 148 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 48708998999987889999999999987993999789999999