HHsearch alignment for GI: 254780829 and conserved domain: PRK08939

Probab=97.93  E-value=2.2e-05  Score=54.34  Aligned_cols=76  Identities=25%  Similarity=0.325  Sum_probs=45.7

Q ss_pred             CHHHHHH-HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEE
Q ss_conf             8899999-862030486899999999998778864086444466566866996798886899999999970---787797
Q gi|254780829|r    8 SPREIVS-ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIK   83 (437)
Q Consensus         8 tP~~i~~-~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~   83 (437)
T Consensus       118 mpk~i~~as~~d~~~~d~~R~~a~~~a~--~F~~~y~~-----~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~  190 (306)
T PRK08939        118 MPKDLLQATLADIDLDDLDRLDALMAAL--DFLEAYKP-----GEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTL  190 (306)
T ss_pred             CCHHHHCCCHHHCCCCCHHHHHHHHHHH--HHHHHHCC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             7799980989864889778999999999--99997376-----9888778898999998999999999999986992999


Q ss_pred             EECCCEE
Q ss_conf             1434101
Q gi|254780829|r   84 VEVTKFT   90 (437)
Q Consensus        84 ~daT~ft   90 (437)
T Consensus       191 v~~p~~~  197 (306)
T PRK08939        191 VHFPEFI  197 (306)
T ss_pred             EEHHHHH
T ss_conf             8759999