HHsearch alignment for GI: 254780829 and conserved domain: PRK11034
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional.
Probab=99.97 E-value=7.3e-31 Score=219.54 Aligned_cols=270 Identities=21% Similarity=0.374 Sum_probs=179.2
Q ss_pred HHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 899999862030486899999999998778864086444466566-8669967988868999999999707877971434
Q gi|254780829|r 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87 (437)
Q Consensus 9 P~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~p-sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT 87 (437)
T Consensus 449 l~~le~~l~~~viGQ~~Ai~~v~~ai~----~~r--aGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMS 522 (758)
T PRK11034 449 LKNLGDRLKMLVFGQDKAIEALTEAIK----MSR--AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMS 522 (758)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 998999987787454999999999999----986--38889999705899978998777999999999986677214266
Q ss_pred CEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 1012-----------12234310134678887652127899856549888868887555531143211004668988986
Q gi|254780829|r 88 KFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156 (437)
Q Consensus 88 ~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (437)
T Consensus 523 Ey~e~hsvsrLiGaPPGYVGy~eGG~Lte-------~Vr~~PysVv----L~DEIEK---------AhpdV~nilLQvlD 582 (758)
T PRK11034 523 EYMERHTVSRLIGAPPGYVGFDQGGLLTD-------AVIKHPHAVL----LLDEIEK---------AHPDVFNLLLQVMD 582 (758)
T ss_pred HHCCHHHHHHHCCCCCCCCCCCCCCCCCH-------HHHHCCCEEE----EEHHHHH---------HCHHHHHHHHHHCC
T ss_conf 53120147774489986667677770128-------7873987799----7336756---------39899998873237
Q ss_pred HCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 16888854998753554554433466766632100011010013543221000001023553327888630310111236
Q gi|254780829|r 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 (437)
Q Consensus 157 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (437)
T Consensus 583 ~G~LtD~~Gr~-------------------vdF~NtiIImTSN~G-------------a------~~~------------ 612 (758)
T PRK11034 583 NGTLTDNNGRK-------------------ADFRNVVLVMTTNAG-------------V------RET------------ 612 (758)
T ss_pred CCCCCCCCCCE-------------------EECEEEEEEEECCCC-------------H------HHH------------
T ss_conf 78301799998-------------------844001999825617-------------4------878------------
Q ss_pred HHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 78887532221002221001357665654332101223432046652211246664202466401675422112125543
Q gi|254780829|r 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316 (437)
Q Consensus 237 a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~ 316 (437)
T Consensus 613 -----~~~~~gf~~------------------~~~~~~~~--------------------~~l--------~-~~F~PEF 640 (758)
T PRK11034 613 -----ERKSIGLIH------------------QDNSTDAM--------------------EEI--------K-KIFTPEF 640 (758)
T ss_pred -----HHHCCCCCC------------------CCCHHHHH--------------------HHH--------H-HHCCHHH
T ss_conf -----642147554------------------20359999--------------------999--------9-5479867
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 34512688615542467888764346889999999987519689984249999999999840400123724679999998
Q gi|254780829|r 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 (437)
Q Consensus 317 ~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~ 396 (437)
T Consensus 641 lNRiD~ii~F~~L~~~~l~~Iv~~----~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~-----~~GARpl~R~I~~~ 711 (758)
T PRK11034 641 RNRLDNIIWFDHLSTDVIHQVVDK----FIVELQAQLDQKGVSLEVSQEARDWLAEKGYDR-----AMGARPMARVIQDN 711 (758)
T ss_pred HHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCC-----CCCCCHHHHHHHHH
T ss_conf 723674786388999999999999----999999999978985998899999999848894-----53711288999999
Q ss_pred HHHHHCCC----CCCCCCEEEEC
Q ss_conf 67762127----56877689985
Q gi|254780829|r 397 LEDISFSA----SDLQEKTVVID 415 (437)
Q Consensus 397 l~d~~fe~----p~~~~~~v~Id 415 (437)
T Consensus 712 i~~~La~~il~g~~~~g~~v~v~ 734 (758)
T PRK11034 712 LKKPLANELLFGSLVDGGQVTVA 734 (758)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 88999999972988898989999