HHsearch alignment for GI: 254780829 and conserved domain: PRK13341

Probab=99.56  E-value=3.6e-13  Score=104.79  Aligned_cols=78  Identities=28%  Similarity=0.448  Sum_probs=54.1

Q ss_pred             CCCCHHHHHHHHHHCEECHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf             76888999998620304868999---999999987788640864444665668669967988868999999999707877
Q gi|254780829|r    5 FNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF   81 (437)
Q Consensus         5 ~~ltP~~i~~~Ld~~VvGQ~~AK---k~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF   81 (437)
T Consensus        20 ~rmRP~~----Lde~-vGQ~hllg~g~~Lrr~i~~~--------------~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F   80 (726)
T PRK13341         20 DRLRPRT----LEEF-VGQDHILGEGRLLRRAIKAD--------------RVGSLILYGPPGVGKTTLARIIANHTRAHF   80 (726)
T ss_pred             HHHCCCC----HHHH-CCCHHHCCCCCHHHHHHHCC--------------CCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             8629998----7773-59575428982899999769--------------998278889799999999999988748867


Q ss_pred             EEEECCCEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             97143410121223431013467888765212
Q gi|254780829|r   82 IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI  113 (437)
Q Consensus        82 ~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~  113 (437)
T Consensus        81 ~~lsA------------v~sgvkdlr~ii~~A  100 (726)
T PRK13341         81 SSLNA------------VLAGVKDLRAEVDAA  100 (726)
T ss_pred             EEEEC------------CCCCHHHHHHHHHHH
T ss_conf             99856------------203779999999999