HHsearch alignment for GI: 254780829 and conserved domain: TIGR01243

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.61  E-value=3.6e-15  Score=117.74  Aligned_cols=223  Identities=15%  Similarity=0.046  Sum_probs=131.2

Q ss_pred             CEECHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCC
Q ss_conf             304868999999999987788--640864444665668669967988868999999999707877971434101212234
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWR--RQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG   96 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~--R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG   96 (437)
T Consensus       542 diGGlee~kq~lreaveWPlk~~~~f~k~G~---~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lsk-WvG  617 (980)
T TIGR01243       542 DIGGLEEVKQELREAVEWPLKAPEVFEKLGI---RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK-WVG  617 (980)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCC---CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHH-HHC
T ss_conf             1466789999998775234440589986078---899734874689861688888774014564677407312234-403


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf             31013467888765212789985654988886888755553114321100466898898616888854998753554554
Q gi|254780829|r   97 RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI  176 (437)
Q Consensus        97 ~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~  176 (437)
T Consensus       618 ----ese~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~-~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPdi~  692 (980)
T TIGR01243       618 ----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEK-GVTDRIVNQLLTELDGLEELSDVVVIAATNRPDIL  692 (980)
T ss_pred             ----HHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf             ----2479999999986412873787302111054124421001-02689999999864044343665898615887423


Q ss_pred             CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             4334667666321000110100135432210000010235533278886303101112367888753222100222
Q gi|254780829|r  177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF  252 (437)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~  252 (437)
T Consensus       693 dPal--lrPGr~dr~i~vP~Pd~~ar~~ifk~ht~~~~l~~dv~l~~la~~teGytGadi~a~~rea~~~~~r~~~  766 (980)
T TIGR01243       693 DPAL--LRPGRLDRLILVPAPDEEARLEIFKIHTRSMPLAEDVDLEELAKKTEGYTGADIEAVVREAALAALREVV  766 (980)
T ss_pred             CCCC--CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             6100--4887412168605985567676765531113530134389998651687632299999999999999973