HHsearch alignment for GI: 254780829 and conserved domain: TIGR01243
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.61 E-value=3.6e-15 Score=117.74 Aligned_cols=223 Identities=15% Similarity=0.046 Sum_probs=131.2
Q ss_pred CEECHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCC
Q ss_conf 304868999999999987788--640864444665668669967988868999999999707877971434101212234
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWR--RQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~--R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG 96 (437)
T Consensus 542 diGGlee~kq~lreaveWPlk~~~~f~k~G~---~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lsk-WvG 617 (980)
T TIGR01243 542 DIGGLEEVKQELREAVEWPLKAPEVFEKLGI---RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK-WVG 617 (980)
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCC---CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHH-HHC
T ss_conf 1466789999998775234440589986078---899734874689861688888774014564677407312234-403
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 31013467888765212789985654988886888755553114321100466898898616888854998753554554
Q gi|254780829|r 97 RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 (437)
Q Consensus 97 ~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~ 176 (437)
T Consensus 618 ----ese~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~-~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPdi~ 692 (980)
T TIGR01243 618 ----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEK-GVTDRIVNQLLTELDGLEELSDVVVIAATNRPDIL 692 (980)
T ss_pred ----HHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf ----2479999999986412873787302111054124421001-02689999999864044343665898615887423
Q ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 4334667666321000110100135432210000010235533278886303101112367888753222100222
Q gi|254780829|r 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252 (437)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~ 252 (437)
T Consensus 693 dPal--lrPGr~dr~i~vP~Pd~~ar~~ifk~ht~~~~l~~dv~l~~la~~teGytGadi~a~~rea~~~~~r~~~ 766 (980)
T TIGR01243 693 DPAL--LRPGRLDRLILVPAPDEEARLEIFKIHTRSMPLAEDVDLEELAKKTEGYTGADIEAVVREAALAALREVV 766 (980)
T ss_pred CCCC--CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6100--4887412168605985567676765531113530134389998651687632299999999999999973