HHsearch alignment for GI: 254780829 and conserved domain: TIGR01420
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.77 E-value=0.001 Score=43.47 Aligned_cols=23 Identities=48% Similarity=0.884 Sum_probs=19.0
Q ss_pred CCCC-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6686-6996798886899999999970
Q gi|254780829|r 52 MPKN-ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psN-iLLiGPtGtGKTlLAktLA~~l 77 (437)
T Consensus 125 ~~~GLiLVTGPTGSGKST---TlAsmI 148 (350)
T TIGR01420 125 RPRGLILVTGPTGSGKST---TLASMI 148 (350)
T ss_pred CCCCCEEEECCCCCCHHH---HHHHHH
T ss_conf 669938987688986789---999999