HHsearch alignment for GI: 254780829 and conserved domain: TIGR02639

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=100.00  E-value=1e-32  Score=231.61  Aligned_cols=268  Identities=23%  Similarity=0.385  Sum_probs=189.8

Q ss_pred             HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             999998620304868999999999987788640864444665668-6699679888689999999997078779714341
Q gi|254780829|r   10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTK   88 (437)
Q Consensus        10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~   88 (437)
T Consensus       489 ~~L~~~L~~kIfGQD~AI~~lv~ai----K~Sr--AGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSE  562 (774)
T TIGR02639       489 KNLEKELKAKIFGQDEAIEQLVSAI----KRSR--AGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSE  562 (774)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHH----HHHH--HHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHH
T ss_conf             2044763013151589999999999----9987--424778881688886479896257889999997082001046504


Q ss_pred             EEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             012-----------122343101346788876521278998565498888688875555311432110046689889861
Q gi|254780829|r   89 FTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD  157 (437)
Q Consensus        89 ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  157 (437)
T Consensus       563 YmEKHTVsRLIGsPPGYVGfEqGGLLT~Av-------rK~P~cVL----LLDEIEK---------AHpDI~NILLQVMD~  622 (774)
T TIGR02639       563 YMEKHTVSRLIGSPPGYVGFEQGGLLTDAV-------RKHPHCVL----LLDEIEK---------AHPDIYNILLQVMDY  622 (774)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCHHHH-------CCCCCEEE----HHHHHHH---------HHHHHHHHHHHHHCC
T ss_conf             468999987416888851316777212233-------12885354----2346666---------313366678766335


Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             68888549987535545544334667666321000110100135432210000010235533278886303101112367
Q gi|254780829|r  158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS  237 (437)
Q Consensus       158 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a  237 (437)
T Consensus       623 AtLTDN~Gr-------------------KaDFRNVILIMTSNaGa~E~~-------------------------------  652 (774)
T TIGR02639       623 ATLTDNNGR-------------------KADFRNVILIMTSNAGAREMS-------------------------------  652 (774)
T ss_pred             CEEECCCCC-------------------EEEECCEEEEECCCCCCCCCC-------------------------------
T ss_conf             434058885-------------------763113688840370010236-------------------------------


Q ss_pred             HHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             88875322210022210013576656543321012234320466522112466642024664016754221121255433
Q gi|254780829|r  238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ  317 (437)
Q Consensus       238 ~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~  317 (437)
T Consensus       653 -----~~~iGF------------------~~~~~~~~~~~A-----------------------------ikk~F~PEFR  680 (774)
T TIGR02639       653 -----KNPIGF------------------GGERVEDKSEKA-----------------------------IKKLFSPEFR  680 (774)
T ss_pred             -----CCCCCC------------------CCCCCHHHHHHH-----------------------------HHHHCCCCCC
T ss_conf             -----776442------------------555412334888-----------------------------9731587420


Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--
Q ss_conf             451268861554246788876434688999999998751968998424999999999984040012372467999999--
Q gi|254780829|r  318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER--  395 (437)
Q Consensus       318 GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~--  395 (437)
T Consensus       681 NRLDaii~F~~L~~~~~~~i~~K----~l~el~~~L~eK~v~l~l~~~a~~~LA~KGY~-----~efGARpl~R~I~~~i  751 (774)
T TIGR02639       681 NRLDAIIAFNDLSEEVAEKIVKK----FLDELQKQLNEKNVELELTDDAIKYLAEKGYD-----EEFGARPLARVIQEEI  751 (774)
T ss_pred             CCCCCEEECCCCCHHHHHHHHHH----HHHHHHHHHHHCCEEEEECHHHHHHHHHHCCC-----CCCCCCHHHHHHHHHH
T ss_conf             13346441699889999999999----99999975530653787647899999863678-----1105544899988741


Q ss_pred             ---HHHHHHCCCCCCCCCEEEEC
Q ss_conf             ---86776212756877689985
Q gi|254780829|r  396 ---VLEDISFSASDLQEKTVVID  415 (437)
Q Consensus       396 ---~l~d~~fe~p~~~~~~v~Id  415 (437)
T Consensus       752 ~~~L~dEILFG~-LKkGG~v~~~  773 (774)
T TIGR02639       752 KKPLSDEILFGK-LKKGGEVKIS  773 (774)
T ss_pred             HHHHHHHHCCCC-CCCCCEEEEE
T ss_conf             257654420570-0167268873