HHsearch alignment for GI: 254780829 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=100.00 E-value=1e-32 Score=231.61 Aligned_cols=268 Identities=23% Similarity=0.385 Sum_probs=189.8
Q ss_pred HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 999998620304868999999999987788640864444665668-6699679888689999999997078779714341
Q gi|254780829|r 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTK 88 (437)
Q Consensus 10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ 88 (437)
T Consensus 489 ~~L~~~L~~kIfGQD~AI~~lv~ai----K~Sr--AGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSE 562 (774)
T TIGR02639 489 KNLEKELKAKIFGQDEAIEQLVSAI----KRSR--AGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSE 562 (774)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHH----HHHH--HHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHH
T ss_conf 2044763013151589999999999----9987--424778881688886479896257889999997082001046504
Q ss_pred EEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 012-----------122343101346788876521278998565498888688875555311432110046689889861
Q gi|254780829|r 89 FTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157 (437)
Q Consensus 89 ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (437)
T Consensus 563 YmEKHTVsRLIGsPPGYVGfEqGGLLT~Av-------rK~P~cVL----LLDEIEK---------AHpDI~NILLQVMD~ 622 (774)
T TIGR02639 563 YMEKHTVSRLIGSPPGYVGFEQGGLLTDAV-------RKHPHCVL----LLDEIEK---------AHPDIYNILLQVMDY 622 (774)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHH-------CCCCCEEE----HHHHHHH---------HHHHHHHHHHHHHCC
T ss_conf 468999987416888851316777212233-------12885354----2346666---------313366678766335
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 68888549987535545544334667666321000110100135432210000010235533278886303101112367
Q gi|254780829|r 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 (437)
Q Consensus 158 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a 237 (437)
T Consensus 623 AtLTDN~Gr-------------------KaDFRNVILIMTSNaGa~E~~------------------------------- 652 (774)
T TIGR02639 623 ATLTDNNGR-------------------KADFRNVILIMTSNAGAREMS------------------------------- 652 (774)
T ss_pred CEEECCCCC-------------------EEEECCEEEEECCCCCCCCCC-------------------------------
T ss_conf 434058885-------------------763113688840370010236-------------------------------
Q ss_pred HHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 88875322210022210013576656543321012234320466522112466642024664016754221121255433
Q gi|254780829|r 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ 317 (437)
Q Consensus 238 ~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~ 317 (437)
T Consensus 653 -----~~~iGF------------------~~~~~~~~~~~A-----------------------------ikk~F~PEFR 680 (774)
T TIGR02639 653 -----KNPIGF------------------GGERVEDKSEKA-----------------------------IKKLFSPEFR 680 (774)
T ss_pred -----CCCCCC------------------CCCCCHHHHHHH-----------------------------HHHHCCCCCC
T ss_conf -----776442------------------555412334888-----------------------------9731587420
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--
Q ss_conf 451268861554246788876434688999999998751968998424999999999984040012372467999999--
Q gi|254780829|r 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER-- 395 (437)
Q Consensus 318 GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~-- 395 (437)
T Consensus 681 NRLDaii~F~~L~~~~~~~i~~K----~l~el~~~L~eK~v~l~l~~~a~~~LA~KGY~-----~efGARpl~R~I~~~i 751 (774)
T TIGR02639 681 NRLDAIIAFNDLSEEVAEKIVKK----FLDELQKQLNEKNVELELTDDAIKYLAEKGYD-----EEFGARPLARVIQEEI 751 (774)
T ss_pred CCCCCEEECCCCCHHHHHHHHHH----HHHHHHHHHHHCCEEEEECHHHHHHHHHHCCC-----CCCCCCHHHHHHHHHH
T ss_conf 13346441699889999999999----99999975530653787647899999863678-----1105544899988741
Q ss_pred ---HHHHHHCCCCCCCCCEEEEC
Q ss_conf ---86776212756877689985
Q gi|254780829|r 396 ---VLEDISFSASDLQEKTVVID 415 (437)
Q Consensus 396 ---~l~d~~fe~p~~~~~~v~Id 415 (437)
T Consensus 752 ~~~L~dEILFG~-LKkGG~v~~~ 773 (774)
T TIGR02639 752 KKPLSDEILFGK-LKKGGEVKIS 773 (774)
T ss_pred HHHHHHHHCCCC-CCCCCEEEEE
T ss_conf 257654420570-0167268873