HHsearch alignment for GI: 254780829 and conserved domain: TIGR02640
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=98.02 E-value=1.5e-05 Score=55.48 Aligned_cols=79 Identities=29% Similarity=0.414 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC-CEEECCCCCCCHHH
Q ss_conf 68999999999987788640864444665668669967988868999999999707877971434-10121223431013
Q gi|254780829|r 23 QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT-KFTEIGYVGRNVEQ 101 (437)
Q Consensus 23 Q~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT-~ftE~gyvG~DVes 101 (437)
T Consensus 4 t~~v~~v~~R~l~------yL~~G~P-------vHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~ 70 (265)
T TIGR02640 4 TDAVKRVTSRALR------YLKSGYP-------VHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGY 70 (265)
T ss_pred CHHHHHHHHHHHH------HHCCCCC-------EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 7237999998766------3227886-------67447888556899999997368968998658232654423154675
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 4678887652127
Q gi|254780829|r 102 IIRDLVDVAINIV 114 (437)
Q Consensus 102 ~i~~l~~~a~~~~ 114 (437)
T Consensus 71 ~~~kv~DqfihnV 83 (265)
T TIGR02640 71 TRKKVVDQFIHNV 83 (265)
T ss_pred EEEEEEECCEEEE
T ss_conf 2222320121113