HHsearch alignment for GI: 254780829 and conserved domain: TIGR02902
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=98.28 E-value=1.8e-06 Score=61.29 Aligned_cols=203 Identities=25% Similarity=0.360 Sum_probs=119.8
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970----------78779714341
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA----------GAPFIKVEVTK 88 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l----------~VPF~~~daT~ 88 (437)
T Consensus 66 EIiGQe~GI~ALKAALC---------GPN-----PQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDATT 131 (532)
T TIGR02902 66 EIIGQEEGIKALKAALC---------GPN-----PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDATT 131 (532)
T ss_pred CCCCCHHHHHHHHHHCC---------CCC-----CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf 25673556899998606---------868-----9638987886961789999999986508753789886689850510
Q ss_pred EE--ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 01--2122343101346788876521278998565498888688875555311432110046689889861688885499
Q gi|254780829|r 89 FT--EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID 166 (437)
Q Consensus 89 ft--E~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 166 (437)
T Consensus 132 ~RFDERG---------------------------I-------------A------------------------------- 140 (532)
T TIGR02902 132 ARFDERG---------------------------I-------------A------------------------------- 140 (532)
T ss_pred CCCCCCC---------------------------C-------------C-------------------------------
T ss_conf 3602146---------------------------6-------------6-------------------------------
Q ss_pred EEECCCCCCCCCCCCCC-CCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 87535545544334667-66632100011010013543221000001023553327888630310111236788875322
Q gi|254780829|r 167 IEVADTSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 (437)
Q Consensus 167 i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 245 (437)
T Consensus 141 -------DPLIGSVHDPIYQGAGplG~AGIPQPK~GAV------------------------------------T~AHGG 177 (532)
T TIGR02902 141 -------DPLIGSVHDPIYQGAGPLGVAGIPQPKPGAV------------------------------------TKAHGG 177 (532)
T ss_pred -------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------------------------CCCCCC
T ss_conf -------6567761585333765457885575877763------------------------------------202586
Q ss_pred HHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC---CCCCCCCCHHHHH----HCCCCCCCCCCC-------
Q ss_conf 21002221001357665654332101223432046652211---2466642024664----016754221121-------
Q gi|254780829|r 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST---KYGSINTDHILFI----ASGAFHVSRPAD------- 311 (437)
Q Consensus 246 ~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~---~~~~~~~~~~~~i----~~~~~~~~k~~g------- 311 (437)
T Consensus 178 vLFIDEIGELHP~~M------------NKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~Pe 245 (532)
T TIGR02902 178 VLFIDEIGELHPVQM------------NKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPE 245 (532)
T ss_pred EEEECCCCCCCHHHH------------HHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCC
T ss_conf 551212466582435------------31411330222000012358777865427899720678734012133369877
Q ss_pred -CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHH
Q ss_conf -2554334512688615542467888764346889999999987519689984249999999999
Q gi|254780829|r 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 (437)
Q Consensus 312 -lipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~ 375 (437)
T Consensus 246 EIpPAlRSRC-~EIFFR~L~~EEi~~iAk~-------------AaeKIg~~l~~~Al~~I~~Ya~ 296 (532)
T TIGR02902 246 EIPPALRSRC-VEIFFRPLLKEEIKEIAKN-------------AAEKIGLNLEKEALDLIAKYAS 296 (532)
T ss_pred CCCHHHHCCC-EEEEECCCCHHHHHHHHHH-------------HHHHCCCCCCHHHHHHHHHHHC
T ss_conf 6783465052-2677168887899999876-------------5653046547547999998740