HHsearch alignment for GI: 254780829 and conserved domain: TIGR02903
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.43 E-value=9e-12 Score=95.72 Aligned_cols=245 Identities=24% Similarity=0.325 Sum_probs=157.3
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCE
Q ss_conf 0486899999999998778864086444466566866996798886899999999970----------787797143410
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA----------GAPFIKVEVTKF 89 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l----------~VPF~~~daT~f 89 (437)
T Consensus 157 iVGQerAI~aLlaK~--------------aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTL 222 (616)
T TIGR02903 157 IVGQERAIKALLAKL--------------ASPFPQHIILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTL 222 (616)
T ss_pred CCCHHHHHHHHHHHH--------------CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 333468999999763--------------188866078557338847899999876213687447611378575157626
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 12122343101346788876521278998565498888688875555311432110046689889861688885499875
Q gi|254780829|r 90 TEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169 (437)
Q Consensus 90 tE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~ 169 (437)
T Consensus 223 R---------------------WDPREv---------------------------------------------------- 229 (616)
T TIGR02903 223 R---------------------WDPREV---------------------------------------------------- 229 (616)
T ss_pred C---------------------CCCCCC----------------------------------------------------
T ss_conf 6---------------------774101----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 35545544334667666321000110100135432210000010235533278886303101112367888753222100
Q gi|254780829|r 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249 (437)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~ 249 (437)
T Consensus 230 ---TNPLLGSVHDPIYQGa~RDLAE~G---------------vPEPk~GL-------------------VT~AHGGvLFI 272 (616)
T TIGR02903 230 ---TNPLLGSVHDPIYQGARRDLAETG---------------VPEPKLGL-------------------VTDAHGGVLFI 272 (616)
T ss_pred ---CCCCCCCCCCCCCCCCCHHHCCCC---------------CCCCCCCC-------------------CCCCCCCEEEE
T ss_conf ---477677625765567640110478---------------79898987-------------------10047756765
Q ss_pred CCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC---CCCCCCCCHH----HHHHCCCCCCCC--------CCCCCC
Q ss_conf 2221001357665654332101223432046652211---2466642024----664016754221--------121255
Q gi|254780829|r 250 DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST---KYGSINTDHI----LFIASGAFHVSR--------PADLLP 314 (437)
Q Consensus 250 ~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~---~~~~~~~~~~----~~i~~~~~~~~k--------~~glip 314 (437)
T Consensus 273 DEIGEL------------D~lLQnKLLKVLEDKrV~F~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eINp 340 (616)
T TIGR02903 273 DEIGEL------------DPLLQNKLLKVLEDKRVEFSSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEINP 340 (616)
T ss_pred ECHHHH------------HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCH
T ss_conf 021122------------27876324443226436653212487537865588885226888256872661588244051
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 43345126886155424678887643468899999999875196899842499999999998404001237246799999
Q gi|254780829|r 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 (437)
Q Consensus 315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E 394 (437)
T Consensus 341 ALRSRCaEv-fFePL~p~dI~~Iv~~-------------AA~klnv~L~~gV~e~Ia~YTie--------G-RkAvnILA 397 (616)
T TIGR02903 341 ALRSRCAEV-FFEPLTPEDIKEIVLN-------------AAEKLNVKLAEGVEELIARYTIE--------G-RKAVNILA 397 (616)
T ss_pred HHHCCCCEE-ECCCCCHHHHHHHHHH-------------HHHHCCCCCCCCHHHHHHHCCCC--------C-HHHHHHHH
T ss_conf 233014313-2179887899999999-------------88861770003648787214713--------1-12223465
Q ss_pred HHHHHHHCCCCCC--CCCEEEECHHHHHHHH
Q ss_conf 9867762127568--7768998599999899
Q gi|254780829|r 395 RVLEDISFSASDL--QEKTVVIDAEYVRLHI 423 (437)
Q Consensus 395 ~~l~d~~fe~p~~--~~~~v~Id~~~V~~~l 423 (437)
T Consensus 398 D~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv 428 (616)
T TIGR02903 398 DVYGYALYKKAEALKEEDKVTITADDVKEVV 428 (616)
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEHHHHHHHH
T ss_conf 4676765304555677774266186777677