HHsearch alignment for GI: 254780829 and conserved domain: TIGR03167
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.59 E-value=0.002 Score=41.66 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=20.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 86699679888689999999997
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARL 76 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~ 76 (437)
T Consensus 128 ~~~vl~G~TG~GKT~iL~~L~~~ 150 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANA 150 (311)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 76998788887789999999976