HHsearch alignment for GI: 254780829 and conserved domain: TIGR03345
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.98 E-value=1.2e-31 Score=224.71 Aligned_cols=272 Identities=24% Similarity=0.325 Sum_probs=174.6
Q ss_pred HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHH---CCCEEEEE
Q ss_conf 9999986203048689999999999877886408644446656686-6996798886899999999970---78779714
Q gi|254780829|r 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLA---GAPFIKVE 85 (437)
Q Consensus 10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l---~VPF~~~d 85 (437)
T Consensus 558 ~~le~~L~~~ViGQ~~Av~~v~~ai~----~sr--aGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~D 631 (852)
T TIGR03345 558 LSLPDRLAERVIGQDHALEAIAERIR----TAR--AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 86799999997284999999999999----987--179999998568998789987789999999999719861147842
Q ss_pred CCCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 341012-----------122343101346788876521278998565498888688875555311432110046689889
Q gi|254780829|r 86 VTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154 (437)
Q Consensus 86 aT~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (437)
T Consensus 632 MSEy~E~hsvsrLiGaPPGYVGy~eGG~LTe-------~Vrr~PysVv----LfDEIEK---------AHpdV~nilLQv 691 (852)
T TIGR03345 632 MSEFQEAHTVSRLKGSPPGYVGYGEGGVLTE-------AVRRKPYSVV----LLDEVEK---------AHPDVLELFYQV 691 (852)
T ss_pred CHHHCCHHHHHHHCCCCCCCCCCCCCCHHHH-------HHHHCCCEEE----EECHHHH---------CCHHHHHHHHHH
T ss_conf 2432104368786389997667487772109-------8880998688----8611300---------288999999987
Q ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 86168888549987535545544334667666321000110100135432210000010235533278886303101112
Q gi|254780829|r 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 (437)
Q Consensus 155 l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (437)
T Consensus 692 lD~G~LtD~~Gr~-------------------vdF~NtIIImTS-------------------N~Gs~~i~~~~------ 727 (852)
T TIGR03345 692 FDKGVMEDGEGRE-------------------IDFKNTVILLTS-------------------NAGSDLIMALC------ 727 (852)
T ss_pred HCCCEEECCCCCE-------------------EECEEEEEEECC-------------------CHHHHHHHHHH------
T ss_conf 2467775799998-------------------845212999757-------------------24479998640------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 36788875322210022210013576656543321012234320466522112466642024664016754221121255
Q gi|254780829|r 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP 314 (437)
Q Consensus 235 ~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glip 314 (437)
T Consensus 728 -------------------------~~~~~~~~~~~~~~~v~~----------------------------~l~~-~F~P 753 (852)
T TIGR03345 728 -------------------------ADPETAPDPEALLEALRP----------------------------ELLK-VFKP 753 (852)
T ss_pred -------------------------CCCCCCCCHHHHHHHHHH----------------------------HHHH-HCCH
T ss_conf -------------------------376555668999999999----------------------------9983-4798
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 43345126886155424678887643468899999999875-19689984249999999999840400123724679999
Q gi|254780829|r 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT-EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 (437)
Q Consensus 315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~-~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~ 393 (437)
T Consensus 754 EFlnRi-~ii~F~~L~~~~l~~Iv~~----~l~~l~~rL~~~~~i~l~~~~~~~~~l~~~g~~-----~~~GARpl~r~I 823 (852)
T TIGR03345 754 AFLGRM-TVIPYLPLDDDVLAAIVRL----KLDRIARRLKENHGAELVYSEALVEHIVARCTE-----VESGARNIDAIL 823 (852)
T ss_pred HHHCCE-EEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCC-----CCCCCCHHHHHH
T ss_conf 886456-6897368999999999999----999999999862896899889999999982899-----776864389999
Q ss_pred HHHHHHHHCC------CCCCCCCEEEEC
Q ss_conf 9986776212------756877689985
Q gi|254780829|r 394 ERVLEDISFS------ASDLQEKTVVID 415 (437)
Q Consensus 394 E~~l~d~~fe------~p~~~~~~v~Id 415 (437)
T Consensus 824 ~~~i~~~la~~iL~~~~~g~~~~~i~~~ 851 (852)
T TIGR03345 824 NQTLLPELSRQILERLAAGEPIERIHLD 851 (852)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9998899999999987089972488815