>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

Probab=96.14 E-value=0.0054 Score=38.81 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=22.3 Q ss_pred CCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE---EECHHHHHHHHHHH Q ss_conf 25543345126-88615542467888764346889999999987---519689---98424999999999 Q gi|254780829|r 312 LLPEIQGRFPV-RVHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL---DFTEDSIDALADVA 374 (437) Q Consensus 312 lipE~~GR~p~-~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L---~ft~~Al~~IA~~A 374 (437) T Consensus 514 l~~p~~G~i~idg~~~~~~~~~~~r~~i-----~~v~Q~~~lf~gTi~eNi~~~~~~~~~~~i~~a~~~a 578 (694) T TIGR03375 514 LYQPTEGSVLLDGVDIRQIDPADLRRNI-----GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELA 578 (694) T ss_pred CCCCCCCEEEECCEECCCCCHHHHHHHC-----EEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH T ss_conf 7589988799898542549999997302-----1357677110746999984169999999999999981

HHsearch alignment for GI: 254780829 and conserved domain: TIGR03375