HHsearch alignment for GI: 254780829 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.66 E-value=0.0001 Score=49.99 Aligned_cols=84 Identities=14% Similarity=0.231 Sum_probs=54.5
Q ss_pred CCCCCCCCC--EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 255433451--268861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r 312 LLPEIQGRF--PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 (437)
Q Consensus 312 lipE~~GR~--p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L 389 (437)
T Consensus 140 ~l~dL~SRl~~~~~~~I~~pdd~~~~~iL~k-----------~~~~r~i--~i~~~vi~yl~~r~~-R-------~~~~l 198 (226)
T TIGR03420 140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQS-----------RAARRGL--QLPDEVADYLLRHGS-R-------DMGSL 198 (226)
T ss_pred CHHHHHHHHHCCCEEECCCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCC-C-------CHHHH
T ss_conf 0177999996885685279999999999999-----------9998599--889999999998637-9-------89999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHH
Q ss_conf 9999998677621275687768998599999899
Q gi|254780829|r 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 (437)
Q Consensus 390 rtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l 423 (437)
T Consensus 199 ~~~l~~Ld~~sl~-----~kr--~ITi~l~kevL 225 (226)
T TIGR03420 199 MALLDALDRASLA-----AKR--KITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHHH-----HCC--CCCHHHHHHHH
T ss_conf 9999999999998-----089--99999999984