HHsearch alignment for GI: 254780829 and conserved domain: cd01127
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=95.82 E-value=0.014 Score=36.16 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=36.1
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHH---HHCCCEEEEECC-CEEECCCC-CCCH
Q ss_conf 665668669967988868999999999---707877971434-10121223-4310
Q gi|254780829|r 49 DELMPKNILLVGPTGVGKTAISRRLAR---LAGAPFIKVEVT-KFTEIGYV-GRNV 99 (437)
Q Consensus 49 ~e~~psNiLLiGPtGtGKTlLAktLA~---~l~VPF~~~daT-~ftE~gyv-G~DV 99 (437)
T Consensus 38 ~~~e~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe~~~~fy~~~~d~ 93 (410)
T cd01127 38 KDAEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSKFYRPATDI 93 (410)
T ss_pred CCHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCE
T ss_conf 65202747998899998899999999999986990999958854999975447766