HHsearch alignment for GI: 254780829 and conserved domain: cd03228
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.0081 Score=37.66 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=22.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~gl~~ 53 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999839999999976775