HHsearch alignment for GI: 254780829 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.014 Score=36.17 Aligned_cols=45 Identities=29% Similarity=0.560 Sum_probs=32.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE---------CCCCCCCH
Q ss_conf 66996798886899999999970787--79714341012---------12234310
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE---------IGYVGRNV 99 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE---------~gyvG~DV 99 (437)
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 85 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDV 85 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCC
T ss_conf 99999899982999999996676678868999999966089999973179993689