HHsearch alignment for GI: 254780829 and conserved domain: cd03259
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.011 Score=36.78 Aligned_cols=44 Identities=39% Similarity=0.628 Sum_probs=29.0
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHH
Q ss_conf 56686-69967988868999999999707877971434101212234310134
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~ 102 (437)
T Consensus 23 i~~Gei~~iiGpnGaGKSTl~~~i~Gl~~-p-------~~G~I~~~g~~i~~~ 67 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLER-P-------DSGEILIDGRDVTGV 67 (213)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC-C-------CCEEEEECCEECCCC
T ss_conf 88998999999999739999999975999-8-------970899999998889