HHsearch alignment for GI: 254780829 and conserved domain: cd03293
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0036 Score=39.97 Aligned_cols=24 Identities=42% Similarity=0.703 Sum_probs=21.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
T Consensus 32 ~~~iiGpsGsGKSTLl~~i~Gl~~ 55 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999579999999975999