HHsearch alignment for GI: 254780829 and conserved domain: cd03296
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.0022 Score=41.32 Aligned_cols=23 Identities=43% Similarity=0.758 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
T Consensus 31 ~~iiGpSGsGKSTll~~i~Gl~~ 53 (239)
T cd03296 31 VALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999779999999976999