Query         gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 437
No_of_seqs    143 out of 2529
Neff          7.7 
Searched_HMMs 39220
Date          Sun May 29 18:59:24 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780829.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR00390 hslU heat shock prot 100.0       0       0  877.9  30.4  430    7-437     1-463 (463)
  2 PRK05201 hslU ATP-dependent pr 100.0       0       0  859.7  35.5  430    5-437     2-442 (442)
  3 COG1220 HslU ATP-dependent pro 100.0       0       0  803.8  33.5  432    5-437     2-444 (444)
  4 TIGR00382 clpX ATP-dependent C 100.0       0       0  750.8   9.1  342    8-426    91-450 (452)
  5 PRK05342 clpX ATP-dependent pr 100.0       0       0  692.9  17.9  343    7-427    61-406 (411)
  6 KOG0745 consensus              100.0       0       0  662.3  15.7  349    7-420   134-528 (564)
  7 COG1219 ClpX ATP-dependent pro 100.0       0       0  661.1  12.0  345    7-428    50-396 (408)
  8 TIGR01241 FtsH_fam ATP-depende 100.0       0       0  469.8   5.0  358   19-403    60-429 (505)
  9 CHL00176 ftsH cell division pr 100.0       0       0  337.3   9.9  348   19-385   178-532 (631)
 10 PRK10733 hflB ATP-dependent me 100.0       0       0  342.7   4.2  347   19-385   153-508 (644)
 11 KOG0734 consensus              100.0       0       0  318.6  11.1  359    5-380   291-655 (752)
 12 COG0465 HflB ATP-dependent Zn  100.0 1.5E-44       0  308.2   5.8  364    5-385   130-505 (596)
 13 KOG0731 consensus              100.0 1.6E-43       0  301.6   6.2  346   18-379   311-663 (774)
 14 TIGR02639 ClpA ATP-dependent C 100.0   1E-32 2.5E-37  231.6  11.7  268   10-415   489-773 (774)
 15 CHL00095 clpC Clp protease ATP 100.0 1.3E-31 3.2E-36  224.5  14.7  284   10-416   501-803 (823)
 16 PRK10865 protein disaggregatio 100.0 4.4E-31 1.1E-35  220.9  17.2  268   11-416   561-848 (857)
 17 TIGR03345 VI_ClpV1 type VI sec 100.0 1.2E-31   3E-36  224.7  13.1  272   10-415   558-851 (852)
 18 COG0542 clpA ATP-binding subun 100.0 3.6E-31 9.1E-36  221.5  15.1  275    9-417   482-775 (786)
 19 TIGR03346 chaperone_ClpB ATP-d 100.0 1.4E-30 3.6E-35  217.7  15.6  268   11-416   558-845 (852)
 20 PRK11034 clpA ATP-dependent Cl 100.0 7.3E-31 1.9E-35  219.5  13.8  270    9-415   449-734 (758)
 21 PRK03992 proteasome-activating  99.9 3.2E-26 8.2E-31  189.4   7.2  246   19-272   133-378 (390)
 22 COG1222 RPT1 ATP-dependent 26S  99.9 3.2E-26 8.1E-31  189.4   2.5  211   52-269   184-394 (406)
 23 TIGR01242 26Sp45 26S proteasom  99.9 1.3E-25 3.2E-30  185.6   5.3  207   52-265   155-361 (364)
 24 COG1223 Predicted ATPase (AAA+  99.8 2.3E-21   6E-26  157.9   6.5  159    8-179   106-270 (368)
 25 KOG1051 consensus               99.8   2E-20   5E-25  151.9   9.3  284   10-417   554-853 (898)
 26 KOG0730 consensus               99.8 1.6E-20   4E-25  152.5   7.4  218   19-253   435-658 (693)
 27 CHL00195 ycf46 Ycf46; Provisio  99.8 1.7E-19 4.4E-24  145.8   6.7  189   51-250   257-447 (491)
 28 KOG0733 consensus               99.8 3.2E-19 8.1E-24  144.1   6.0  193   51-253   221-417 (802)
 29 KOG0733 consensus               99.7 5.9E-19 1.5E-23  142.3   3.9  192   52-253   544-739 (802)
 30 KOG0652 consensus               99.7 5.3E-19 1.4E-23  142.6   0.3  204   52-262   204-407 (424)
 31 KOG0738 consensus               99.7 2.4E-17 6.1E-22  131.9   6.9  145   11-164   193-349 (491)
 32 KOG0729 consensus               99.7 1.3E-17 3.3E-22  133.6   3.9  212   52-271   210-422 (435)
 33 COG0464 SpoVK ATPases of the A  99.7 2.4E-16 6.1E-21  125.4   9.6  221   20-251   244-466 (494)
 34 pfam07724 AAA_2 AAA domain (Cd  99.6 3.9E-17   1E-21  130.5   2.2   68   54-128     4-85  (168)
 35 KOG0736 consensus               99.6   1E-16 2.6E-21  127.9   4.2  101   53-159   705-805 (953)
 36 KOG0728 consensus               99.6 1.1E-16 2.8E-21  127.6   2.6  140   52-198   180-319 (404)
 37 TIGR01243 CDC48 AAA family ATP  99.6 3.6E-15 9.3E-20  117.7   9.2  223   19-252   542-766 (980)
 38 KOG0727 consensus               99.6 7.5E-16 1.9E-20  122.2   4.7  137   52-198   188-327 (408)
 39 KOG0726 consensus               99.6 4.8E-16 1.2E-20  123.4   2.3  207   51-264   217-423 (440)
 40 KOG0737 consensus               99.6 1.5E-14 3.7E-19  113.8   8.7  182   51-245   125-309 (386)
 41 PRK13341 recombination factor   99.6 3.6E-13 9.2E-18  104.8  15.5   78    5-113    20-100 (726)
 42 KOG0735 consensus               99.6   1E-14 2.6E-19  114.8   7.0  151   20-181   669-821 (952)
 43 pfam05496 RuvB_N Holliday junc  99.5 6.1E-14 1.6E-18  109.8   9.9   70    5-88     16-85  (234)
 44 TIGR01243 CDC48 AAA family ATP  99.5   1E-14 2.6E-19  114.8   5.6  159   52-220   239-397 (980)
 45 KOG0651 consensus               99.5 3.1E-14   8E-19  111.7   5.9  126   51-184   164-292 (388)
 46 PRK13342 recombination factor   99.5 6.8E-13 1.7E-17  103.0  12.0   66    4-88      4-72  (417)
 47 PRK00080 ruvB Holliday junctio  99.4 1.4E-12 3.5E-17  101.0  10.2   74    6-93     18-91  (328)
 48 TIGR02903 spore_lon_C ATP-depe  99.4   9E-12 2.3E-16   95.7  14.2  245   20-423   157-428 (616)
 49 KOG0740 consensus               99.4 2.2E-13 5.6E-18  106.2   4.9  150   19-176   154-303 (428)
 50 CHL00181 cbbX CbbX; Provisiona  99.4   1E-10 2.6E-15   88.9  16.2   89    8-99     13-111 (287)
 51 KOG0730 consensus               99.4   3E-12 7.7E-17   98.8   8.2  217   21-250   187-404 (693)
 52 PRK10787 DNA-binding ATP-depen  99.3 1.6E-10 4.1E-15   87.6  15.5   94    9-112   313-416 (784)
 53 pfam00004 AAA ATPase family as  99.3 6.2E-12 1.6E-16   96.8   7.0  114   56-177     1-115 (131)
 54 COG0466 Lon ATP-dependent Lon   99.3 7.2E-10 1.8E-14   83.4  16.3  104  312-425   479-583 (782)
 55 KOG0741 consensus               99.3 1.2E-11 3.1E-16   94.8   7.1  192   53-249   256-457 (744)
 56 PRK13765 ATP-dependent proteas  99.3 4.4E-09 1.1E-13   78.3  19.8   46   16-77     29-74  (637)
 57 TIGR00635 ruvB Holliday juncti  99.3 7.2E-11 1.8E-15   89.9  10.7   69   15-93      2-70  (305)
 58 TIGR00763 lon ATP-dependent pr  99.3 1.8E-10 4.6E-15   87.3  12.7  245   13-402   406-663 (941)
 59 TIGR00368 TIGR00368 Mg chelata  99.2 3.8E-12 9.6E-17   98.2   3.3   44   18-77    194-237 (505)
 60 KOG0739 consensus               99.2 7.1E-12 1.8E-16   96.4   3.7  149   19-179   134-285 (439)
 61 cd00009 AAA The AAA+ (ATPases   99.2   4E-11   1E-15   91.6   7.2   62   21-96      1-65  (151)
 62 COG2255 RuvB Holliday junction  99.2 2.6E-10 6.6E-15   86.3   9.7   77    3-93     16-92  (332)
 63 PRK13407 bchI magnesium chelat  99.1 4.1E-09   1E-13   78.5  13.5   43   19-77      9-53  (334)
 64 COG2256 MGS1 ATPase related to  99.1 2.1E-09 5.3E-14   80.4  10.8  119    4-172    15-140 (436)
 65 COG0714 MoxR-like ATPases [Gen  99.0 7.3E-10 1.9E-14   83.3   7.4   70    8-93     14-83  (329)
 66 COG1224 TIP49 DNA helicase TIP  99.0 5.3E-10 1.3E-14   84.3   6.6   72    6-90     31-104 (450)
 67 pfam06068 TIP49 TIP49 C-termin  99.0 1.1E-09 2.8E-14   82.2   7.0   72    5-89     15-88  (395)
 68 KOG2028 consensus               99.0 8.6E-09 2.2E-13   76.4  11.3   70    5-90    130-202 (554)
 69 PRK05563 DNA polymerase III su  99.0   1E-08 2.7E-13   75.9  10.6   48   19-79     17-64  (541)
 70 PRK06305 DNA polymerase III su  98.9 2.4E-08 6.2E-13   73.5  11.5   49   19-80     18-66  (462)
 71 COG0606 Predicted ATPase with   98.9 1.1E-09 2.9E-14   82.1   4.1   44   18-77    179-222 (490)
 72 PRK06647 DNA polymerase III su  98.9 1.1E-08 2.9E-13   75.7   9.2   48   19-79     17-64  (560)
 73 KOG0732 consensus               98.9   2E-09   5E-14   80.6   5.0  206   52-267   298-509 (1080)
 74 pfam01078 Mg_chelatase Magnesi  98.9 1.5E-09 3.7E-14   81.4   4.2   43   19-77      4-46  (207)
 75 TIGR02881 spore_V_K stage V sp  98.8 1.8E-07 4.6E-12   67.8  13.5   73  312-397   161-235 (261)
 76 PRK08451 DNA polymerase III su  98.8 2.3E-08 5.8E-13   73.7   8.7   48   19-79     15-62  (523)
 77 PRK07270 DNA polymerase III su  98.8 3.4E-08 8.6E-13   72.6   9.2   49   19-80     16-64  (557)
 78 PRK06674 DNA polymerase III su  98.8 4.1E-08   1E-12   72.0   9.4   49   19-80     17-65  (563)
 79 PRK07133 DNA polymerase III su  98.8 2.8E-07   7E-12   66.6  13.0   48   19-79     19-66  (718)
 80 PRK09862 putative ATP-dependen  98.8 6.2E-09 1.6E-13   77.3   4.5   43   19-77    192-234 (506)
 81 PRK05896 DNA polymerase III su  98.8 1.3E-07 3.4E-12   68.7  10.9   48   19-79     17-64  (613)
 82 PRK04195 replication factor C   98.7 2.6E-08 6.7E-13   73.2   6.7   62   20-90     16-77  (403)
 83 PRK00411 cdc6 cell division co  98.7 4.5E-06 1.2E-10   58.7  18.1   66   17-92     29-99  (394)
 84 CHL00081 chlI Mg-protoporyphyr  98.7 1.6E-08 4.2E-13   74.6   5.5   48   19-82     13-69  (347)
 85 TIGR02397 dnaX_nterm DNA polym  98.7 1.6E-07 4.2E-12   68.1  10.6   48   20-80     16-63  (363)
 86 PRK07764 DNA polymerase III su  98.7   8E-07   2E-11   63.6  12.8   48   19-79     16-63  (775)
 87 PRK12402 replication factor C   98.7 4.4E-08 1.1E-12   71.8   6.1   47   20-80     17-63  (337)
 88 PRK08691 DNA polymerase III su  98.6 2.1E-07 5.4E-12   67.4   8.8   48   19-79     17-64  (704)
 89 PRK07003 DNA polymerase III su  98.6 1.8E-07 4.5E-12   67.9   8.4   49   19-80     17-65  (816)
 90 KOG2004 consensus               98.6 1.1E-06 2.9E-11   62.7  11.7   53   54-110   439-499 (906)
 91 KOG0742 consensus               98.6 3.3E-07 8.5E-12   66.1   8.6  110   54-174   385-496 (630)
 92 pfam07726 AAA_3 ATPase family   98.6   5E-08 1.3E-12   71.4   4.4   37   55-91      1-37  (131)
 93 PRK06645 DNA polymerase III su  98.6 8.1E-07 2.1E-11   63.6  10.3  125   19-179    22-174 (507)
 94 PRK12323 DNA polymerase III su  98.6 3.5E-07   9E-12   66.0   8.2   48   19-79     17-64  (721)
 95 PRK07994 DNA polymerase III su  98.5 3.4E-06 8.6E-11   59.6  12.4   49   19-80     17-65  (643)
 96 PRK08853 DNA polymerase III su  98.5 7.2E-07 1.8E-11   64.0   8.4   48   19-79     17-64  (717)
 97 COG1474 CDC6 Cdc6-related prot  98.5 0.00011 2.9E-09   49.7  18.8   74   20-110    19-97  (366)
 98 pfam07728 AAA_5 AAA domain (dy  98.5 1.3E-07 3.3E-12   68.8   3.4   38   55-92      1-39  (139)
 99 PRK05057 aroK shikimate kinase  98.4 5.2E-07 1.3E-11   64.8   6.1   49   52-103     3-51  (172)
100 PRK00440 rfc replication facto  98.4 9.6E-07 2.4E-11   63.1   6.5   49   15-78     14-62  (318)
101 TIGR00382 clpX ATP-dependent C  98.4   6E-08 1.5E-12   71.0   0.3   82  220-305   198-292 (452)
102 TIGR03015 pepcterm_ATPase puta  98.4 1.4E-05 3.5E-10   55.6  12.0   90  313-426   176-266 (269)
103 PRK00131 aroK shikimate kinase  98.3 7.2E-07 1.8E-11   63.9   5.0   36   51-86      2-37  (175)
104 PRK08770 DNA polymerase III su  98.3 1.9E-05 4.8E-10   54.8  12.3   48   19-79     17-64  (663)
105 PRK05648 DNA polymerase III su  98.3 6.8E-06 1.7E-10   57.6  10.0   48   19-79     17-64  (705)
106 pfam06309 Torsin Torsin. This   98.3 2.4E-06 6.1E-11   60.6   7.5   77    6-92     13-89  (127)
107 pfam00308 Bac_DnaA Bacterial d  98.3 2.7E-05   7E-10   53.7  12.8   66  312-398   147-214 (219)
108 cd00464 SK Shikimate kinase (S  98.3 1.4E-06 3.6E-11   62.0   5.3   58   55-115     1-58  (154)
109 TIGR02902 spore_lonB ATP-depen  98.3 1.8E-06 4.7E-11   61.3   5.8  203   19-375    66-296 (532)
110 PRK13946 shikimate kinase; Pro  98.3   1E-06 2.6E-11   62.9   4.5   40   47-86     14-53  (195)
111 KOG0735 consensus               98.3 3.3E-06 8.4E-11   59.6   6.9   76   50-130   428-507 (952)
112 PRK05342 clpX ATP-dependent pr  98.3 1.8E-07 4.6E-12   67.8   0.4   66  242-307   173-251 (411)
113 PRK05564 DNA polymerase III su  98.2 2.2E-06 5.5E-11   60.8   5.7   46   19-77      5-50  (313)
114 PRK08116 hypothetical protein;  98.2 2.3E-06 5.8E-11   60.7   5.8   73    6-87     67-145 (262)
115 PRK07471 DNA polymerase III su  98.2 2.7E-06 6.8E-11   60.3   5.8   47   18-77     17-63  (363)
116 KOG1942 consensus               98.2 1.7E-06 4.3E-11   61.5   4.7   64   17-89     37-102 (456)
117 PRK03731 aroL shikimate kinase  98.2 1.9E-06 4.8E-11   61.3   4.6   35   52-86      1-35  (172)
118 PRK13947 shikimate kinase; Pro  98.2 1.6E-06 4.2E-11   61.6   4.3   33   54-86      2-34  (171)
119 PRK08181 transposase; Validate  98.2 1.5E-06 3.8E-11   61.9   3.7   41   52-92    105-148 (269)
120 pfam00158 Sigma54_activat Sigm  98.2 2.5E-06 6.4E-11   60.4   4.8   61   20-92      1-64  (168)
121 PRK13948 shikimate kinase; Pro  98.2   3E-06 7.6E-11   59.9   4.9   37   50-86      7-43  (182)
122 PRK06526 transposase; Provisio  98.2 1.9E-06 4.9E-11   61.2   3.8   40   52-91     97-139 (254)
123 pfam10431 ClpB_D2-small C-term  98.2 1.5E-05 3.9E-10   55.4   8.4   79  329-416     1-83  (89)
124 PRK07940 DNA polymerase III su  98.1 3.5E-06 8.8E-11   59.5   4.9   59   19-79      6-65  (395)
125 PRK09112 DNA polymerase III su  98.1 4.8E-06 1.2E-10   58.6   5.6   47   18-77     23-69  (352)
126 PRK13949 shikimate kinase; Pro  98.1   3E-06 7.5E-11   60.0   4.4   33   54-86      2-34  (169)
127 PRK09183 transposase/IS protei  98.1 1.9E-06 4.9E-11   61.2   3.4   26   52-77    100-125 (258)
128 TIGR02928 TIGR02928 orc1/cdc6   98.1   4E-06   1E-10   59.1   4.8   75   19-110    18-103 (383)
129 PRK11331 5-methylcytosine-spec  98.1 2.6E-06 6.5E-11   60.4   3.6   27   51-77    192-218 (459)
130 PRK10865 protein disaggregatio  98.1 0.00019 4.7E-09   48.3  12.7   98   52-159   198-307 (857)
131 PRK07952 DNA replication prote  98.1 1.2E-05 2.9E-10   56.1   6.2   64    5-77     57-120 (242)
132 PRK12422 chromosomal replicati  98.0 0.00012 3.1E-09   49.5  11.3   71   15-93    109-184 (455)
133 CHL00095 clpC Clp protease ATP  98.0 0.00028 7.1E-09   47.2  12.9   98   52-159   199-307 (823)
134 PRK11608 pspF phage shock prot  98.0 7.8E-06   2E-10   57.2   4.9   62   19-92      7-71  (325)
135 TIGR02640 gas_vesic_GvpN gas v  98.0 1.5E-05 3.7E-10   55.5   6.1   79   23-114     4-83  (265)
136 KOG0989 consensus               98.0 1.2E-05 3.1E-10   55.9   5.7   58    8-80     25-84  (346)
137 PRK04132 replication factor C   98.0 1.5E-05 3.8E-10   55.4   6.0   48   15-77     23-70  (863)
138 PRK00625 shikimate kinase; Pro  98.0 6.2E-06 1.6E-10   57.9   4.0   33   54-86      1-33  (173)
139 pfam01695 IstB IstB-like ATP b  98.0 6.4E-06 1.6E-10   57.8   3.9   38   52-89     46-86  (178)
140 COG0703 AroK Shikimate kinase   98.0 1.3E-05 3.2E-10   55.9   5.4   34   53-86      2-35  (172)
141 PRK05022 anaerobic nitric oxid  98.0 1.3E-05 3.4E-10   55.8   5.3   62   19-92    187-251 (510)
142 KOG0743 consensus               98.0 1.3E-05 3.3E-10   55.8   5.3   50   52-109   234-283 (457)
143 TIGR02173 cyt_kin_arch cytidyl  98.0 6.9E-06 1.8E-10   57.6   3.6   63   56-134     3-65  (173)
144 smart00382 AAA ATPases associa  98.0 6.8E-06 1.7E-10   57.6   3.5   40   53-92      2-44  (148)
145 KOG0744 consensus               97.9 1.3E-05 3.3E-10   55.8   4.7   44   56-107   180-223 (423)
146 PRK07261 topology modulation p  97.9 2.5E-05 6.5E-10   53.9   6.1   44   56-100     3-46  (171)
147 PRK11361 acetoacetate metaboli  97.9 2.2E-05 5.7E-10   54.3   5.8   41   52-92    165-208 (457)
148 PRK08939 primosomal protein Dn  97.9 2.2E-05 5.5E-10   54.3   5.7   76    8-90    118-197 (306)
149 PRK06835 DNA replication prote  97.9   8E-06   2E-10   57.2   3.5   38   53-90    183-223 (330)
150 pfam01434 Peptidase_M41 Peptid  97.9 2.1E-05 5.4E-10   54.4   5.3  101  277-378     2-104 (192)
151 PRK08118 topology modulation p  97.9 3.1E-05 7.9E-10   53.3   6.2   40   56-96      4-43  (167)
152 PRK10365 transcriptional regul  97.9 2.1E-05 5.3E-10   54.5   5.2   41   52-92    161-204 (441)
153 PRK13531 regulatory ATPase Rav  97.9 1.4E-05 3.6E-10   55.5   4.1   66   11-92     13-79  (498)
154 COG0593 DnaA ATPase involved i  97.9 0.00067 1.7E-08   44.7  12.6   67   15-93     85-158 (408)
155 PRK07399 DNA polymerase III su  97.9   3E-05 7.7E-10   53.4   5.7   47   18-77      4-50  (314)
156 PRK08058 DNA polymerase III su  97.9 2.6E-05 6.6E-10   53.8   5.3   47   20-79      7-54  (329)
157 PRK06872 DNA polymerase III su  97.9   3E-05 7.5E-10   53.5   5.4   48   19-79     17-64  (696)
158 PRK10923 glnG nitrogen regulat  97.8   3E-05 7.7E-10   53.4   5.2   41   52-92    160-203 (469)
159 PRK12377 putative replication   97.8 1.5E-05 3.9E-10   55.3   3.5   26   52-77    100-125 (248)
160 cd02021 GntK Gluconate kinase   97.8 2.2E-05 5.5E-10   54.3   3.9   31   56-86      2-32  (150)
161 TIGR03346 chaperone_ClpB ATP-d  97.8 5.3E-05 1.3E-09   51.9   5.8   97   52-159   193-302 (852)
162 COG1484 DnaC DNA replication p  97.8 2.8E-05 7.3E-10   53.6   4.2   37   52-88    104-143 (254)
163 PRK09825 idnK D-gluconate kina  97.8 2.8E-05   7E-10   53.7   4.1   33   53-85      3-35  (176)
164 PRK09111 DNA polymerase III su  97.7 6.6E-05 1.7E-09   51.2   5.5  118   19-165    24-165 (600)
165 COG1221 PspF Transcriptional r  97.7 3.5E-05 8.8E-10   53.0   4.0   40   54-93    102-145 (403)
166 PRK00091 miaA tRNA delta(2)-is  97.7 3.7E-05 9.4E-10   52.9   4.1   46   53-102     4-49  (304)
167 PRK11545 gntK gluconate kinase  97.7 3.7E-05 9.5E-10   52.8   4.0   33   53-85      8-40  (177)
168 KOG0736 consensus               97.7 2.9E-05 7.4E-10   53.5   3.3   37   55-91    433-469 (953)
169 TIGR01187 potA polyamine ABC t  97.7 1.9E-05 4.9E-10   54.7   2.3   45   58-102     1-47  (331)
170 COG0464 SpoVK ATPases of the A  97.7 5.4E-05 1.4E-09   51.8   4.3   77   51-133    16-92  (494)
171 PRK11034 clpA ATP-dependent Cl  97.7 6.9E-05 1.7E-09   51.1   4.8   99   52-159   206-315 (758)
172 PRK10820 DNA-binding transcrip  97.7 0.00013 3.4E-09   49.2   6.2   62   19-92    205-269 (513)
173 TIGR03420 DnaA_homol_Hda DnaA   97.7  0.0001 2.6E-09   50.0   5.5   84  312-423   140-225 (226)
174 PRK13951 bifunctional shikimat  97.6 5.5E-05 1.4E-09   51.7   3.9   32   55-86      2-33  (488)
175 CHL00026 ycf2 Ycf2              97.6 7.6E-05 1.9E-09   50.8   4.5   40   52-91   1629-1668(2286)
176 PRK11388 DNA-binding transcrip  97.6 0.00011 2.7E-09   49.9   5.3   40   53-92    348-390 (639)
177 PRK00149 dnaA chromosomal repl  97.6   0.001 2.5E-08   43.6  10.2   66   16-93    118-190 (447)
178 TIGR03499 FlhF flagellar biosy  97.6 0.00037 9.4E-09   46.4   7.9   12   56-67    197-208 (282)
179 PRK08903 hypothetical protein;  97.6 0.00015 3.9E-09   48.9   5.9   85  312-424   138-224 (227)
180 PRK09087 hypothetical protein;  97.6 0.00013 3.4E-09   49.2   5.4   55   14-82     18-73  (226)
181 COG0324 MiaA tRNA delta(2)-iso  97.6 7.9E-05   2E-09   50.7   4.2   46   53-102     3-48  (308)
182 PTZ00088 adenylate kinase 1; P  97.6 6.7E-05 1.7E-09   51.2   3.6   30   55-84      2-31  (225)
183 PRK00279 adk adenylate kinase;  97.6   7E-05 1.8E-09   51.1   3.6   29   55-83      2-30  (215)
184 KOG2680 consensus               97.5   7E-05 1.8E-09   51.1   3.2   67   15-90     37-105 (454)
185 COG3604 FhlA Transcriptional r  97.5 0.00017 4.4E-09   48.5   5.1   62   19-92    224-288 (550)
186 PRK05642 DNA replication initi  97.5 0.00018 4.6E-09   48.4   5.2   85  312-424   147-233 (234)
187 KOG0741 consensus               97.5 0.00037 9.5E-09   46.3   6.8   31   54-84    539-569 (744)
188 cd01428 ADK Adenylate kinase (  97.5 9.5E-05 2.4E-09   50.2   3.7   28   56-83      2-29  (194)
189 COG0563 Adk Adenylate kinase a  97.5 0.00012   3E-09   49.6   4.1   30   54-83      1-30  (178)
190 TIGR03345 VI_ClpV1 type VI sec  97.5 9.8E-05 2.5E-09   50.1   3.5   33   52-84    207-242 (852)
191 PRK06921 hypothetical protein;  97.5 0.00011 2.9E-09   49.7   3.5   26   52-77    115-140 (265)
192 PRK05703 flhF flagellar biosyn  97.4  0.0015 3.7E-08   42.5   9.0   33   54-86    211-250 (412)
193 TIGR02982 heterocyst_DevA ABC   97.4 5.8E-05 1.5E-09   51.6   1.7   46   30-75      2-53  (220)
194 COG1219 ClpX ATP-dependent pro  97.4 3.1E-05 7.8E-10   53.4   0.2   69  240-308   159-240 (408)
195 CHL00178 consensus              97.4  0.0003 7.6E-09   47.0   5.3   40   52-91   1457-1496(2133)
196 COG2812 DnaX DNA polymerase II  97.4 0.00011 2.9E-09   49.7   3.0   48   20-80     18-65  (515)
197 PRK02496 adk adenylate kinase;  97.4 0.00014 3.6E-09   49.1   3.5   29   54-82      2-30  (185)
198 COG2204 AtoC Response regulato  97.4 0.00033 8.5E-09   46.6   5.2   41   52-92    163-206 (464)
199 KOG0745 consensus               97.4 3.5E-05 8.9E-10   53.0   0.2   71  241-311   289-372 (564)
200 PRK11174 cysteine/glutathione   97.4   0.002   5E-08   41.7   9.0   58  312-375   399-463 (588)
201 COG3842 PotA ABC-type spermidi  97.4 5.5E-05 1.4E-09   51.7   1.0   42   50-91     27-71  (352)
202 PRK13900 type IV secretion sys  97.4  0.0004   1E-08   46.1   5.4   26   52-77    159-184 (332)
203 COG0470 HolB ATPase involved i  97.4 0.00059 1.5E-08   45.0   6.2   48   19-78      2-49  (325)
204 PRK06217 hypothetical protein;  97.4 0.00025 6.4E-09   47.4   4.2   33   54-86      2-34  (185)
205 CHL00179 consensus              97.3  0.0002 5.2E-09   48.0   3.7   46   52-97   1599-1646(2262)
206 TIGR01313 therm_gnt_kin carboh  97.3 0.00014 3.5E-09   49.2   2.7   27   56-82      1-32  (175)
207 PRK06995 flhF flagellar biosyn  97.3  0.0012 2.9E-08   43.2   7.3   19   51-69    173-192 (404)
208 COG2074 2-phosphoglycerate kin  97.3 0.00096 2.5E-08   43.7   6.8   61   11-84     60-120 (299)
209 TIGR03263 guanyl_kin guanylate  97.3 0.00034 8.8E-09   46.6   4.5   35   56-90      4-38  (180)
210 pfam01745 IPT Isopentenyl tran  97.3  0.0003 7.6E-09   47.0   4.2   32   56-87      4-35  (232)
211 pfam00493 MCM MCM2/3/5 family.  97.3 0.00047 1.2E-08   45.7   5.1   77   13-93     19-96  (327)
212 PRK12724 flagellar biosynthesi  97.3   0.001 2.6E-08   43.6   6.7   21   54-77    224-244 (432)
213 KOG3347 consensus               97.3 0.00032 8.2E-09   46.8   3.9   34   51-84      5-38  (176)
214 COG1102 Cmk Cytidylate kinase   97.3 0.00028 7.1E-09   47.2   3.6   36   56-92      3-38  (179)
215 PRK08154 anaerobic benzoate ca  97.2 0.00085 2.2E-08   44.0   5.9   35   52-86    132-166 (304)
216 PRK08727 hypothetical protein;  97.2 0.00059 1.5E-08   45.0   5.1   85  313-425   144-230 (233)
217 TIGR00602 rad24 checkpoint pro  97.2 0.00024   6E-09   47.6   2.9   25   56-80    121-145 (670)
218 PRK11176 lipid transporter ATP  97.2  0.0032 8.3E-08   40.3   8.6   47  324-375   404-457 (581)
219 KOG2170 consensus               97.2 0.00082 2.1E-08   44.1   5.3   61   10-77     74-134 (344)
220 COG1239 ChlI Mg-chelatase subu  97.2 0.00074 1.9E-08   44.4   4.9   63    5-81      4-66  (423)
221 cd01130 VirB11-like_ATPase Typ  97.2  0.0004   1E-08   46.1   3.6   27   52-78     24-50  (186)
222 PRK06893 DNA replication initi  97.2  0.0013 3.2E-08   42.9   6.1   84  313-424   143-228 (229)
223 TIGR02782 TrbB_P P-type conjug  97.2 0.00037 9.5E-09   46.3   3.4   26   52-77    138-164 (315)
224 TIGR02868 CydC ABC transporter  97.1 0.00034 8.6E-09   46.6   3.1   32   55-86    389-422 (566)
225 pfam06414 Zeta_toxin Zeta toxi  97.1  0.0033 8.3E-08   40.2   8.1   43   50-92      9-52  (191)
226 PRK00300 gmk guanylate kinase;  97.1 0.00089 2.3E-08   43.9   5.0   40   52-91      4-46  (208)
227 pfam00437 GSPII_E Type II/IV s  97.1  0.0005 1.3E-08   45.5   3.7   28   52-79    138-165 (283)
228 PRK08084 DNA replication initi  97.1  0.0011 2.8E-08   43.3   5.4   84  312-423   148-233 (235)
229 TIGR00972 3a0107s01c2 phosphat  97.1 0.00055 1.4E-08   45.3   3.8   49   56-108    30-79  (248)
230 PRK13808 adenylate kinase; Pro  97.1  0.0015 3.8E-08   42.5   5.9   30   55-84      2-31  (297)
231 PRK13851 type IV secretion sys  97.1 0.00046 1.2E-08   45.8   3.3   26   52-77    161-186 (343)
232 PRK06731 flhF flagellar biosyn  97.1  0.0029 7.4E-08   40.6   7.4   27   49-75     71-97  (270)
233 PRK03839 putative kinase; Prov  97.1 0.00063 1.6E-08   44.9   3.9   30   55-84      2-31  (180)
234 TIGR00764 lon_rel ATP-dependen  97.1 0.00092 2.3E-08   43.8   4.6   84  292-380   281-367 (662)
235 PRK06620 hypothetical protein;  97.1 0.00067 1.7E-08   44.7   3.9   60   15-82     14-73  (214)
236 COG0542 clpA ATP-binding subun  97.1  0.0012 3.1E-08   43.0   5.2   99   52-160   190-300 (786)
237 PHA02244 ATPase-like protein    97.1 0.00076 1.9E-08   44.3   4.1   52   56-107   122-175 (383)
238 TIGR01351 adk adenylate kinase  97.0  0.0006 1.5E-08   45.0   3.4   30   55-84      1-30  (232)
239 COG1419 FlhF Flagellar GTP-bin  97.0 0.00076 1.9E-08   44.3   3.9   34   53-86    203-243 (407)
240 COG3854 SpoIIIAA ncharacterize  97.0 0.00051 1.3E-08   45.5   3.0   27   52-78    136-162 (308)
241 cd03115 SRP The signal recogni  97.0  0.0017 4.5E-08   42.0   5.7   22   56-77      3-24  (173)
242 PRK13894 conjugal transfer ATP  97.0  0.0017 4.2E-08   42.1   5.6   26   52-77    148-173 (320)
243 PRK10790 putative multidrug tr  97.0  0.0079   2E-07   37.7   9.0   47  324-375   403-454 (593)
244 KOG0991 consensus               97.0  0.0013 3.4E-08   42.8   5.0   45   19-77     28-72  (333)
245 COG3839 MalK ABC-type sugar tr  97.0 0.00049 1.3E-08   45.6   2.7   36   56-91     32-69  (338)
246 pfam00448 SRP54 SRP54-type pro  97.0  0.0019 4.8E-08   41.8   5.5   23   53-75      1-23  (196)
247 cd00071 GMPK Guanosine monopho  96.9  0.0012 3.1E-08   43.0   4.3   34   56-89      2-36  (137)
248 pfam00625 Guanylate_kin Guanyl  96.9  0.0015 3.8E-08   42.5   4.4   35   56-90      4-39  (182)
249 KOG2543 consensus               96.9  0.0014 3.5E-08   42.6   4.1   44   47-90     24-68  (438)
250 COG4178 ABC-type uncharacteriz  96.9 0.00088 2.2E-08   43.9   3.1   22   56-77    422-443 (604)
251 pfam03215 Rad17 Rad17 cell cyc  96.9  0.0011 2.7E-08   43.4   3.5   27   55-81     47-73  (490)
252 PRK13833 conjugal transfer pro  96.9   0.001 2.6E-08   43.5   3.4   26   52-77    143-168 (323)
253 TIGR02538 type_IV_pilB type IV  96.8 0.00048 1.2E-08   45.6   1.5   50  207-258   419-468 (577)
254 TIGR00174 miaA tRNA delta(2)-i  96.8  0.0012   3E-08   43.1   3.4   55   56-114     2-66  (307)
255 PRK10789 putative multidrug tr  96.8   0.011 2.8E-07   36.8   8.4   46  324-374   377-428 (569)
256 PRK08099 nicotinamide-nucleoti  96.8  0.0011 2.8E-08   43.3   3.2   60   54-113   232-291 (411)
257 pfam00406 ADK Adenylate kinase  96.8 0.00081 2.1E-08   44.1   2.5   26   58-83      1-26  (186)
258 PRK00889 adenylylsulfate kinas  96.8  0.0027 6.8E-08   40.8   5.1   36   56-91      7-45  (175)
259 cd03260 ABC_PstB_phosphate_tra  96.8  0.0015 3.8E-08   42.4   3.8   25   56-80     29-53  (227)
260 TIGR01420 pilT_fam twitching m  96.8   0.001 2.6E-08   43.5   2.9   23   52-77    125-148 (350)
261 COG4088 Predicted nucleotide k  96.8  0.0011 2.7E-08   43.4   2.9   23   56-78      4-26  (261)
262 PRK12723 flagellar biosynthesi  96.8  0.0092 2.4E-07   37.3   7.7   23   52-74    173-195 (388)
263 PRK11022 dppD dipeptide transp  96.8  0.0061 1.6E-07   38.4   6.8   32   50-81     29-61  (327)
264 PRK11432 fbpC ferric transport  96.7 0.00093 2.4E-08   43.7   2.4   41   51-91     29-72  (351)
265 PRK10536 hypothetical protein;  96.7  0.0047 1.2E-07   39.2   6.0   24   54-77     75-98  (262)
266 pfam01583 APS_kinase Adenylyls  96.7  0.0033 8.5E-08   40.2   5.2   37   56-92      5-44  (157)
267 smart00350 MCM minichromosome   96.7 0.00065 1.7E-08   44.8   1.6  112   14-132   199-314 (509)
268 pfam00910 RNA_helicase RNA hel  96.7  0.0013 3.3E-08   42.9   3.0   43   56-99      1-52  (105)
269 cd02020 CMPK Cytidine monophos  96.7  0.0014 3.5E-08   42.7   3.1   29   56-84      2-30  (147)
270 PRK04182 cytidylate kinase; Pr  96.7   0.002   5E-08   41.7   3.9   28   56-83      3-30  (178)
271 PRK05541 adenylylsulfate kinas  96.7  0.0021 5.4E-08   41.4   4.0   36   56-91     10-48  (176)
272 TIGR02533 type_II_gspE general  96.7 0.00084 2.1E-08   44.1   1.8   93  215-326   346-442 (495)
273 TIGR03258 PhnT 2-aminoethylpho  96.7  0.0012   3E-08   43.1   2.5   48   51-98     28-87  (362)
274 KOG3354 consensus               96.6  0.0016 4.2E-08   42.2   3.1   32   53-84     12-43  (191)
275 TIGR02528 EutP ethanolamine ut  96.6 0.00069 1.8E-08   44.6   1.1   23   55-77      2-24  (144)
276 PRK10418 nikD nickel transport  96.6  0.0013 3.3E-08   42.9   2.4   33   55-87     31-63  (254)
277 PRK13657 cyclic beta-1,2-gluca  96.6   0.015 3.9E-07   35.9   7.9   59  312-375   384-449 (585)
278 TIGR03167 tRNA_sel_U_synt tRNA  96.6   0.002   5E-08   41.7   3.3   23   54-76    128-150 (311)
279 TIGR03265 PhnT2 putative 2-ami  96.6  0.0013 3.4E-08   42.8   2.4   36   56-91     33-70  (353)
280 smart00072 GuKc Guanylate kina  96.6  0.0032 8.1E-08   40.3   4.3   37   54-90      3-40  (184)
281 PRK13649 cbiO cobalt transport  96.6  0.0061 1.6E-07   38.5   5.6   22   56-77     36-57  (280)
282 TIGR00968 3a0106s01 sulfate AB  96.5  0.0012 3.1E-08   43.0   1.9   26   52-77     23-50  (241)
283 PRK07667 uridine kinase; Provi  96.5  0.0029 7.5E-08   40.5   3.8   38   52-89     10-53  (190)
284 PRK03846 adenylylsulfate kinas  96.5  0.0066 1.7E-07   38.3   5.6   40   53-92     24-66  (198)
285 smart00763 AAA_PrkA PrkA AAA d  96.5  0.0062 1.6E-07   38.4   5.5   66   13-86     46-118 (361)
286 COG1122 CbiO ABC-type cobalt t  96.5  0.0025 6.5E-08   40.9   3.5   41   50-90     26-69  (235)
287 KOG1969 consensus               96.5  0.0035 8.9E-08   40.0   4.1   41   52-92    325-365 (877)
288 cd03294 ABC_Pro_Gly_Bertaine T  96.5  0.0017 4.3E-08   42.1   2.4   28   51-78     47-75  (269)
289 TIGR01817 nifA Nif-specific re  96.5  0.0035   9E-08   40.0   4.1   90    9-122   203-295 (574)
290 PRK09473 oppD oligopeptide tra  96.5    0.02 5.1E-07   35.1   7.8   41   56-101    45-85  (330)
291 PRK00023 cmk cytidylate kinase  96.5  0.0024 6.2E-08   41.1   3.1   29   56-84      7-35  (225)
292 PRK13764 ATPase; Provisional    96.5  0.0024 6.2E-08   41.1   3.1   26   52-77    258-283 (605)
293 TIGR01193 bacteriocin_ABC ABC-  96.5    0.01 2.6E-07   37.0   6.3  109   52-167   497-636 (710)
294 cd03246 ABCC_Protease_Secretio  96.4  0.0036 9.1E-08   40.0   3.8   28   51-78     25-53  (173)
295 COG1124 DppF ABC-type dipeptid  96.4  0.0026 6.6E-08   40.9   3.0   43   50-92     29-74  (252)
296 TIGR02442 Cob-chelat-sub cobal  96.4  0.0033 8.5E-08   40.2   3.6   44   20-77      6-49  (688)
297 cd03223 ABCD_peroxisomal_ALDP   96.4  0.0023   6E-08   41.2   2.8   29   50-78     23-52  (166)
298 PRK06696 uridine kinase; Valid  96.4   0.014 3.5E-07   36.2   6.7   34   56-89     29-65  (227)
299 TIGR02915 PEP_resp_reg putativ  96.4  0.0046 1.2E-07   39.3   4.2   69   22-90     85-205 (451)
300 PRK13651 cobalt transporter AT  96.4  0.0074 1.9E-07   37.9   5.2   22   56-77     36-57  (304)
301 cd02027 APSK Adenosine 5'-phos  96.4  0.0066 1.7E-07   38.2   5.0   36   56-91      2-40  (149)
302 PRK08769 DNA polymerase III su  96.4  0.0083 2.1E-07   37.6   5.5   27   51-77     24-50  (319)
303 cd03296 ABC_CysA_sulfate_impor  96.4  0.0022 5.6E-08   41.3   2.5   23   56-78     31-53  (239)
304 PRK12727 flagellar biosynthesi  96.4   0.014 3.5E-07   36.2   6.5   18   51-68    345-363 (557)
305 cd03301 ABC_MalK_N The N-termi  96.4  0.0023 5.8E-08   41.2   2.5   30   50-79     22-52  (213)
306 TIGR03415 ABC_choXWV_ATP choli  96.4  0.0023   6E-08   41.2   2.5   23   56-78     53-75  (382)
307 COG3829 RocR Transcriptional r  96.4  0.0047 1.2E-07   39.2   4.0   41   52-92    267-310 (560)
308 COG1936 Predicted nucleotide k  96.4  0.0041   1E-07   39.6   3.7   30   54-84      1-30  (180)
309 cd03257 ABC_NikE_OppD_transpor  96.3  0.0025 6.3E-08   41.0   2.5   29   50-78     27-56  (228)
310 TIGR02322 phosphon_PhnN phosph  96.3  0.0035   9E-08   40.0   3.3   25   56-80      4-29  (183)
311 pfam03969 AFG1_ATPase AFG1-lik  96.3    0.03 7.6E-07   34.0   8.0   71    8-78      2-86  (361)
312 cd03213 ABCG_EPDR ABCG transpo  96.3   0.004   1E-07   39.7   3.5   23   56-78     38-60  (194)
313 TIGR00455 apsK adenylylsulfate  96.3  0.0039   1E-07   39.7   3.5   22   56-77     22-43  (187)
314 PRK11889 flhF flagellar biosyn  96.3   0.017 4.3E-07   35.6   6.7   13   55-67    243-255 (436)
315 KOG0060 consensus               96.3   0.003 7.8E-08   40.4   2.9   24   53-76    461-484 (659)
316 PRK11248 tauB taurine transpor  96.3  0.0025 6.4E-08   41.0   2.4   29   50-78     23-52  (255)
317 cd03299 ABC_ModC_like Archeal   96.3  0.0027 6.8E-08   40.8   2.5   29   50-78     21-50  (235)
318 PRK11650 ugpC glycerol-3-phosp  96.3  0.0027 6.9E-08   40.8   2.6   29   50-78     26-55  (358)
319 PRK09452 potA putrescine/sperm  96.3  0.0027 6.8E-08   40.8   2.5   28   51-78     40-68  (378)
320 PRK04220 2-phosphoglycerate ki  96.3   0.022 5.7E-07   34.8   7.2   69   10-84     41-123 (306)
321 pfam01057 Parvo_NS1 Parvovirus  96.3  0.0041   1E-07   39.6   3.5   70   13-84     34-142 (271)
322 PRK11000 maltose/maltodextrin   96.3  0.0027 6.9E-08   40.8   2.5   49   50-98     25-83  (369)
323 PRK10636 putative ABC transpor  96.3  0.0043 1.1E-07   39.4   3.5   50   51-100    24-74  (638)
324 cd03295 ABC_OpuCA_Osmoprotecti  96.3  0.0028 7.1E-08   40.7   2.5   23   56-78     30-52  (242)
325 COG1116 TauB ABC-type nitrate/  96.3  0.0029 7.3E-08   40.6   2.6   23   56-78     32-54  (248)
326 cd03229 ABC_Class3 This class   96.3  0.0028 7.3E-08   40.6   2.5   23   56-78     29-51  (178)
327 PRK10078 ribose 1,5-bisphospho  96.3   0.005 1.3E-07   39.1   3.8   22   56-77      5-26  (184)
328 PRK11144 modC molybdate transp  96.3  0.0023 5.9E-08   41.2   2.1   51   50-100    20-86  (352)
329 PRK10851 sulfate/thiosulfate t  96.3  0.0028 7.2E-08   40.6   2.5   29   51-79     25-54  (352)
330 PRK11784 tRNA 2-selenouridine   96.3  0.0044 1.1E-07   39.4   3.4   25   51-75    135-159 (333)
331 PRK10070 glycine betaine trans  96.2   0.003 7.7E-08   40.5   2.5   23   56-78     57-79  (400)
332 pfam00485 PRK Phosphoribulokin  96.2  0.0044 1.1E-07   39.4   3.3   25   56-80      2-26  (196)
333 PRK13644 cbiO cobalt transport  96.2  0.0063 1.6E-07   38.4   4.1   24   55-78     30-53  (274)
334 cd03255 ABC_MJ0796_Lo1CDE_FtsE  96.2   0.003 7.7E-08   40.5   2.4   25   55-79     32-56  (218)
335 PRK10247 putative ABC transpor  96.2  0.0036 9.3E-08   39.9   2.8   28   51-78     30-58  (225)
336 cd03234 ABCG_White The White s  96.2  0.0018 4.5E-08   42.0   1.2   43   36-78     15-58  (226)
337 cd03300 ABC_PotA_N PotA is an   96.2  0.0034 8.7E-08   40.1   2.7   30   50-79     22-52  (232)
338 cd03297 ABC_ModC_molybdenum_tr  96.2  0.0036 9.2E-08   39.9   2.8   25   55-79     25-49  (214)
339 PRK06871 DNA polymerase III su  96.2  0.0084 2.1E-07   37.6   4.6   27   51-77     21-47  (324)
340 cd03231 ABC_CcmA_heme_exporter  96.2  0.0036 9.2E-08   39.9   2.6   23   56-78     29-51  (201)
341 PRK10744 phosphate transporter  96.2  0.0053 1.3E-07   38.9   3.4   24   56-79     39-62  (257)
342 TIGR03375 type_I_sec_LssB type  96.1  0.0054 1.4E-07   38.8   3.4   58  312-374   514-578 (694)
343 PRK11160 cysteine/glutathione   96.1  0.0044 1.1E-07   39.4   2.9   54  316-374   394-454 (575)
344 cd02023 UMPK Uridine monophosp  96.1  0.0067 1.7E-07   38.2   3.8   24   56-79      2-25  (198)
345 pfam07931 CPT Chloramphenicol   96.1   0.014 3.7E-07   36.0   5.5   37   56-92      4-40  (174)
346 cd03293 ABC_NrtD_SsuB_transpor  96.1  0.0036 9.1E-08   40.0   2.4   24   55-78     32-55  (220)
347 cd02028 UMPK_like Uridine mono  96.1   0.007 1.8E-07   38.1   3.8   23   56-78      2-24  (179)
348 PRK13635 cbiO cobalt transport  96.1   0.004   1E-07   39.6   2.5   28   51-78     30-58  (279)
349 PRK10419 nikE nickel transport  96.1   0.003 7.7E-08   40.4   1.9   28   50-77     34-62  (266)
350 cd01882 BMS1 Bms1.  Bms1 is an  96.1   0.023 5.9E-07   34.7   6.4   39   39-77     23-63  (225)
351 pfam10412 TrwB_AAD_bind Type I  96.1   0.013 3.3E-07   36.3   5.2   47   48-94     10-60  (386)
352 COG0194 Gmk Guanylate kinase [  96.1  0.0091 2.3E-07   37.4   4.3   35   56-91      7-41  (191)
353 cd03262 ABC_HisP_GlnQ_permease  96.1  0.0042 1.1E-07   39.5   2.6   23   55-77     28-50  (213)
354 cd03233 ABC_PDR_domain1 The pl  96.1  0.0041   1E-07   39.6   2.5   45   50-99     29-74  (202)
355 cd03261 ABC_Org_Solvent_Resist  96.1  0.0042 1.1E-07   39.5   2.5   23   56-78     29-51  (235)
356 PRK05917 DNA polymerase III su  96.0  0.0066 1.7E-07   38.3   3.5   28   50-77     16-43  (290)
357 PRK13650 cbiO cobalt transport  96.0  0.0045 1.1E-07   39.3   2.6   23   56-78     33-55  (276)
358 PRK13768 GTPase; Provisional    96.0  0.0065 1.7E-07   38.3   3.4   25   53-77      2-26  (253)
359 PRK13640 cbiO cobalt transport  96.0  0.0045 1.1E-07   39.3   2.6   22   56-77     37-58  (283)
360 pfam00519 PPV_E1_C Papillomavi  96.0   0.013 3.4E-07   36.3   4.9   30   51-80    259-289 (432)
361 pfam05621 TniB Bacterial TniB   96.0   0.025 6.3E-07   34.5   6.3   50   19-78     35-86  (302)
362 cd01124 KaiC KaiC is a circadi  96.0  0.0051 1.3E-07   39.0   2.7   30   56-85      2-34  (187)
363 PRK13648 cbiO cobalt transport  96.0  0.0054 1.4E-07   38.8   2.8   39   51-89     32-73  (269)
364 PRK09493 glnQ glutamine ABC tr  96.0  0.0056 1.4E-07   38.7   2.8   29   50-78     23-52  (240)
365 TIGR02142 modC_ABC molybdate A  96.0  0.0075 1.9E-07   37.9   3.5   38   54-91     23-63  (361)
366 PRK08699 DNA polymerase III su  96.0  0.0084 2.2E-07   37.6   3.7   28   50-77     18-45  (325)
367 KOG1970 consensus               95.9   0.006 1.5E-07   38.5   2.9   48   52-99    108-157 (634)
368 pfam03266 DUF265 Protein of un  95.9  0.0072 1.8E-07   38.0   3.3   25   55-79      1-25  (168)
369 COG4650 RtcR Sigma54-dependent  95.9   0.012 3.2E-07   36.4   4.5   39   53-91    208-252 (531)
370 PRK11701 phnK phosphonates tra  95.9  0.0043 1.1E-07   39.4   2.1   29   50-78     28-57  (258)
371 COG4525 TauB ABC-type taurine   95.9  0.0055 1.4E-07   38.8   2.6   22   56-77     34-55  (259)
372 cd03237 ABC_RNaseL_inhibitor_d  95.9  0.0055 1.4E-07   38.8   2.6   23   56-78     28-50  (246)
373 COG3265 GntK Gluconate kinase   95.9  0.0059 1.5E-07   38.5   2.7   75  342-427    74-158 (161)
374 PRK09302 circadian clock prote  95.9  0.0078   2E-07   37.8   3.4   32   54-85     25-60  (501)
375 COG2804 PulE Type II secretory  95.9  0.0092 2.3E-07   37.3   3.6   35   52-86    256-292 (500)
376 pfam05729 NACHT NACHT domain.   95.9  0.0068 1.7E-07   38.1   3.0   37   56-92      3-47  (165)
377 cd03226 ABC_cobalt_CbiO_domain  95.9  0.0058 1.5E-07   38.6   2.6   29   50-78     22-51  (205)
378 PRK13543 cytochrome c biogenes  95.9  0.0058 1.5E-07   38.6   2.6   28   50-77     33-61  (214)
379 PRK13637 cbiO cobalt transport  95.9  0.0052 1.3E-07   38.9   2.3   23   56-78     36-58  (287)
380 PRK13632 cbiO cobalt transport  95.9  0.0057 1.5E-07   38.7   2.5   23   56-78     39-61  (273)
381 COG1118 CysA ABC-type sulfate/  95.9  0.0045 1.2E-07   39.3   2.0   27   52-78     25-53  (345)
382 cd00227 CPT Chloramphenicol (C  95.9  0.0086 2.2E-07   37.5   3.4   38   56-93      5-42  (175)
383 PRK05707 DNA polymerase III su  95.9   0.011 2.9E-07   36.7   4.0   38   36-78     10-47  (328)
384 PRK06547 hypothetical protein;  95.9   0.012 3.1E-07   36.5   4.2   31   56-86     18-49  (184)
385 pfam01202 SKI Shikimate kinase  95.9  0.0072 1.8E-07   38.0   3.0   25   62-86      1-25  (158)
386 COG1201 Lhr Lhr-like helicases  95.9   0.019 4.7E-07   35.3   5.1   19   52-70     36-54  (814)
387 TIGR03269 met_CoM_red_A2 methy  95.8  0.0063 1.6E-07   38.4   2.7   27   51-77     23-50  (520)
388 cd03225 ABC_cobalt_CbiO_domain  95.8  0.0067 1.7E-07   38.2   2.8   29   50-78     23-52  (211)
389 PRK09270 frcK putative fructos  95.8  0.0072 1.8E-07   38.0   2.9   25   56-80     37-61  (230)
390 PRK11607 potG putrescine trans  95.8  0.0044 1.1E-07   39.4   1.9   34   56-89     48-83  (377)
391 PRK13642 cbiO cobalt transport  95.8  0.0057 1.5E-07   38.7   2.4   23   56-78     36-58  (277)
392 PRK13540 cytochrome c biogenes  95.8  0.0061 1.5E-07   38.5   2.5   22   56-77     30-51  (200)
393 PRK11147 ABC transporter ATPas  95.8  0.0097 2.5E-07   37.2   3.6   28   51-78     26-54  (632)
394 PRK11247 ssuB aliphatic sulfon  95.8  0.0057 1.4E-07   38.7   2.4   27   51-77     35-62  (257)
395 PRK11264 putative amino-acid A  95.8  0.0063 1.6E-07   38.4   2.6   28   50-77     23-51  (248)
396 PRK13539 cytochrome c biogenes  95.8   0.006 1.5E-07   38.5   2.5   29   50-78     24-53  (206)
397 pfam04851 ResIII Type III rest  95.8   0.017 4.3E-07   35.6   4.8   24   54-77     19-42  (103)
398 PRK10771 thiQ thiamine transpo  95.8  0.0062 1.6E-07   38.4   2.5   25   55-79     27-51  (233)
399 PRK13633 cobalt transporter AT  95.8  0.0062 1.6E-07   38.4   2.5   28   50-77     33-61  (281)
400 cd01127 TrwB Bacterial conjuga  95.8   0.014 3.5E-07   36.2   4.3   51   49-99     38-93  (410)
401 COG1123 ATPase components of v  95.8   0.005 1.3E-07   39.0   2.0   39   48-86     29-68  (539)
402 TIGR03608 L_ocin_972_ABC putat  95.8  0.0063 1.6E-07   38.4   2.5   29   50-78     20-49  (206)
403 PRK10619 histidine/lysine/argi  95.8  0.0052 1.3E-07   38.9   2.1   24   55-78     33-56  (257)
404 PRK11629 lolD lipoprotein tran  95.8  0.0062 1.6E-07   38.4   2.5   27   51-77     32-59  (233)
405 cd03256 ABC_PhnC_transporter A  95.8  0.0062 1.6E-07   38.4   2.5   29   50-78     23-52  (241)
406 PRK11831 putative ABC transpor  95.8  0.0058 1.5E-07   38.6   2.3   28   51-78     31-59  (269)
407 cd01120 RecA-like_NTPases RecA  95.8   0.017 4.3E-07   35.6   4.6   32   55-86      1-35  (165)
408 TIGR02788 VirB11 P-type DNA tr  95.8  0.0073 1.9E-07   38.0   2.8   26   52-77    157-182 (328)
409 PRK06964 DNA polymerase III su  95.8   0.011 2.9E-07   36.7   3.7   38   37-78      9-46  (342)
410 PRK05480 uridine kinase; Provi  95.8  0.0099 2.5E-07   37.1   3.4   24   56-79      9-32  (209)
411 cd03298 ABC_ThiQ_thiamine_tran  95.8  0.0063 1.6E-07   38.4   2.4   23   56-78     27-49  (211)
412 PRK13646 cbiO cobalt transport  95.8  0.0073 1.9E-07   38.0   2.7   24   55-78     35-58  (286)
413 cd03236 ABC_RNaseL_inhibitor_d  95.8  0.0054 1.4E-07   38.8   2.0   28   51-78     22-51  (255)
414 cd03289 ABCC_CFTR2 The CFTR su  95.8  0.0092 2.4E-07   37.3   3.2   28   51-78     27-55  (275)
415 PRK13549 xylose transporter AT  95.7  0.0068 1.7E-07   38.2   2.5   27   51-77     28-55  (513)
416 cd03369 ABCC_NFT1 Domain 2 of   95.7    0.01 2.6E-07   37.0   3.4   29   51-79     31-60  (207)
417 cd03278 ABC_SMC_barmotin Barmo  95.7  0.0086 2.2E-07   37.5   3.0   26   52-77     20-46  (197)
418 cd03247 ABCC_cytochrome_bd The  95.7  0.0084 2.1E-07   37.6   2.9   28   51-78     25-53  (178)
419 cd03253 ABCC_ATM1_transporter   95.7  0.0068 1.7E-07   38.1   2.4   45   56-100    30-85  (236)
420 cd01131 PilT Pilus retraction   95.7   0.011 2.9E-07   36.7   3.5   25   56-80      4-28  (198)
421 PRK11308 dppF dipeptide transp  95.7  0.0048 1.2E-07   39.2   1.6   43   50-100    37-80  (327)
422 cd03250 ABCC_MRP_domain1 Domai  95.7  0.0061 1.6E-07   38.4   2.2   23   56-78     34-56  (204)
423 pfam02562 PhoH PhoH-like prote  95.7  0.0086 2.2E-07   37.5   2.9   24   54-77     20-43  (205)
424 PRK11147 ABC transporter ATPas  95.7  0.0094 2.4E-07   37.2   3.1   43   55-97    347-389 (632)
425 PRK10908 cell division protein  95.7  0.0067 1.7E-07   38.2   2.3   45   50-102    24-69  (222)
426 PRK13634 cbiO cobalt transport  95.7  0.0067 1.7E-07   38.2   2.3   28   51-78     17-45  (276)
427 COG1618 Predicted nucleotide k  95.7   0.011 2.8E-07   36.8   3.4   27   52-78      4-30  (179)
428 cd03290 ABCC_SUR1_N The SUR do  95.7   0.008   2E-07   37.7   2.7   25   55-79     29-53  (218)
429 PRK06090 DNA polymerase III su  95.7    0.02 5.1E-07   35.1   4.7   29   50-78     22-50  (319)
430 PRK04328 hypothetical protein;  95.7  0.0094 2.4E-07   37.2   3.0   31   54-84     25-58  (250)
431 PRK10522 multidrug transporter  95.7  0.0079   2E-07   37.7   2.5   25  325-354   386-410 (547)
432 cd03228 ABCC_MRP_Like The MRP   95.7  0.0081 2.1E-07   37.7   2.6   24   55-78     30-53  (171)
433 PRK13547 hmuV hemin importer A  95.6  0.0078   2E-07   37.8   2.4   29   50-78     23-52  (273)
434 PRK12337 2-phosphoglycerate ki  95.6   0.055 1.4E-06   32.3   6.7   44   35-84    250-293 (492)
435 CHL00131 ycf16 sulfate ABC tra  95.6  0.0079   2E-07   37.7   2.4   44   51-101    29-74  (252)
436 KOG1051 consensus               95.6   0.019 4.9E-07   35.2   4.4   62    4-81    173-239 (898)
437 pfam08298 AAA_PrkA PrkA AAA do  95.6   0.032 8.2E-07   33.8   5.5   64   20-91     60-124 (358)
438 PRK10584 putative ABC transpor  95.6  0.0079   2E-07   37.8   2.4   29   50-78     32-61  (228)
439 PRK13695 putative NTPase; Prov  95.6   0.013 3.3E-07   36.3   3.5   27   53-79      3-29  (174)
440 cd03244 ABCC_MRP_domain2 Domai  95.6  0.0093 2.4E-07   37.3   2.7   29   51-79     27-56  (221)
441 PTZ00301 uridine kinase; Provi  95.6    0.01 2.7E-07   36.9   2.9   23   56-78      6-28  (210)
442 PRK13538 cytochrome c biogenes  95.6  0.0092 2.3E-07   37.3   2.6   29   50-78     23-52  (204)
443 cd00267 ABC_ATPase ABC (ATP-bi  95.6  0.0098 2.5E-07   37.1   2.7   24   55-78     27-50  (157)
444 cd03291 ABCC_CFTR1 The CFTR su  95.6  0.0092 2.3E-07   37.3   2.6   26   55-80     65-90  (282)
445 cd03245 ABCC_bacteriocin_expor  95.6  0.0091 2.3E-07   37.3   2.5   28   51-78     27-55  (220)
446 KOG0478 consensus               95.5   0.031   8E-07   33.9   5.3   98   20-130   431-538 (804)
447 PRK10762 D-ribose transporter   95.5  0.0087 2.2E-07   37.5   2.4   28   50-77     26-54  (501)
448 PRK13544 consensus              95.5  0.0091 2.3E-07   37.4   2.5   28   51-78     24-52  (208)
449 cd03288 ABCC_SUR2 The SUR doma  95.5   0.011 2.9E-07   36.7   2.9   34   55-88     49-84  (257)
450 PRK09580 sufC cysteine desulfu  95.5  0.0087 2.2E-07   37.5   2.3   28   50-77     23-51  (248)
451 PRK13639 cbiO cobalt transport  95.5  0.0095 2.4E-07   37.2   2.5   24   55-78     30-53  (275)
452 PRK11819 putative ABC transpor  95.5   0.013 3.3E-07   36.4   3.2   27   51-77     30-57  (556)
453 cd00046 DEXDc DEAD-like helica  95.5  0.0085 2.2E-07   37.5   2.3   19   54-72      1-19  (144)
454 PRK13647 cbiO cobalt transport  95.5  0.0091 2.3E-07   37.3   2.4   24   55-78     33-56  (273)
455 PRK13652 cbiO cobalt transport  95.5  0.0089 2.3E-07   37.4   2.3   23   56-78     33-55  (277)
456 cd03292 ABC_FtsE_transporter F  95.5  0.0098 2.5E-07   37.1   2.5   28   50-77     23-51  (214)
457 cd03254 ABCC_Glucan_exporter_l  95.5   0.014 3.7E-07   36.1   3.4   41   51-91     26-69  (229)
458 PRK13645 cbiO cobalt transport  95.5  0.0094 2.4E-07   37.2   2.4   22   56-77     40-61  (289)
459 PRK10261 glutathione transport  95.5   0.009 2.3E-07   37.4   2.3   25   56-80     45-69  (623)
460 COG0572 Udk Uridine kinase [Nu  95.5   0.018 4.6E-07   35.4   3.8   29   56-84     11-39  (218)
461 cd03249 ABC_MTABC3_MDL1_MDL2 M  95.5   0.013 3.2E-07   36.4   3.0   44   56-99     32-86  (238)
462 pfam06745 KaiC KaiC. This fami  95.5   0.012 3.1E-07   36.5   2.9   32   54-85     20-55  (231)
463 cd03235 ABC_Metallic_Cations A  95.5   0.011 2.7E-07   36.9   2.6   24   55-78     27-50  (213)
464 pfam00270 DEAD DEAD/DEAH box h  95.4    0.01 2.6E-07   37.0   2.5   19   53-71     14-32  (167)
465 PRK10938 putative molybdenum t  95.4  0.0096 2.4E-07   37.2   2.3   24   55-78     31-54  (490)
466 PRK13631 cbiO cobalt transport  95.4   0.011 2.7E-07   36.9   2.6   25   55-79     54-78  (320)
467 PRK10253 iron-enterobactin tra  95.4  0.0094 2.4E-07   37.2   2.3   29   50-78     29-58  (265)
468 cd02024 NRK1 Nicotinamide ribo  95.4   0.019 4.9E-07   35.3   3.8   23   56-78      2-24  (187)
469 PRK08233 hypothetical protein;  95.4   0.016 4.1E-07   35.7   3.3   23   55-77      5-27  (182)
470 cd03258 ABC_MetN_methionine_tr  95.4  0.0095 2.4E-07   37.2   2.1   28   51-78     28-56  (233)
471 COG1855 ATPase (PilT family) [  95.4   0.022 5.5E-07   34.9   3.9   25   53-77    263-287 (604)
472 PRK13636 cbiO cobalt transport  95.4   0.012   3E-07   36.6   2.5   24   55-78     34-57  (285)
473 COG1117 PstB ABC-type phosphat  95.3   0.013 3.3E-07   36.3   2.8   43   56-102    36-79  (253)
474 pfam02367 UPF0079 Uncharacteri  95.3   0.017 4.4E-07   35.6   3.4   37   56-93     18-54  (123)
475 cd03214 ABC_Iron-Siderophores_  95.3   0.012 3.1E-07   36.5   2.6   45   50-102    21-66  (180)
476 COG1131 CcmA ABC-type multidru  95.3   0.021 5.5E-07   34.9   3.9   48   53-100    29-88  (293)
477 cd03221 ABCF_EF-3 ABCF_EF-3  E  95.3   0.012   3E-07   36.6   2.5   28   51-78     23-51  (144)
478 PRK13643 cbiO cobalt transport  95.3   0.012   3E-07   36.6   2.4   28   51-78     29-57  (288)
479 PRK11124 artP arginine transpo  95.3   0.012 3.2E-07   36.5   2.6   22   56-77     31-52  (242)
480 COG4618 ArpD ABC-type protease  95.3   0.091 2.3E-06   30.9   7.0   54   51-104   359-424 (580)
481 cd02025 PanK Pantothenate kina  95.3   0.022 5.6E-07   34.9   3.7   22   58-79      4-25  (220)
482 TIGR02858 spore_III_AA stage I  95.3   0.011 2.9E-07   36.7   2.2   41   52-100   122-162 (282)
483 PRK09544 znuC high-affinity zi  95.3   0.013 3.4E-07   36.3   2.6   28   51-78     27-55  (251)
484 TIGR00678 holB DNA polymerase   95.3   0.028   7E-07   34.2   4.2   27   51-77     12-38  (216)
485 PRK11231 fecE iron-dicitrate t  95.3   0.013 3.3E-07   36.3   2.5   23   56-78     31-53  (255)
486 cd03232 ABC_PDR_domain2 The pl  95.3   0.014 3.5E-07   36.2   2.6   27   50-76     29-56  (192)
487 PRK11860 bifunctional 3-phosph  95.3   0.017 4.2E-07   35.7   3.1   24   52-75     85-108 (662)
488 PRK13477 bifunctional pantoate  95.2   0.017 4.3E-07   35.6   3.1   29   56-84    287-315 (512)
489 cd03251 ABCC_MsbA MsbA is an e  95.2   0.014 3.5E-07   36.2   2.6   45   55-99     30-85  (234)
490 cd03259 ABC_Carb_Solutes_like   95.2   0.011 2.8E-07   36.8   2.1   44   51-102    23-67  (213)
491 cd04157 Arl6 Arl6 subfamily.    95.2   0.017 4.2E-07   35.6   3.0   20   55-74      1-20  (162)
492 COG0630 VirB11 Type IV secreto  95.2   0.079   2E-06   31.2   6.4   35   52-86    142-178 (312)
493 TIGR02030 BchI-ChlI magnesium   95.2   0.035 8.8E-07   33.6   4.6   43   19-77      5-49  (340)
494 cd03240 ABC_Rad50 The catalyti  95.2   0.017 4.4E-07   35.5   3.0   22   56-77     25-46  (204)
495 PRK10575 iron-hydroxamate tran  95.2   0.014 3.5E-07   36.2   2.5   23   56-78     40-62  (265)
496 COG1485 Predicted ATPase [Gene  95.2    0.16   4E-06   29.3   7.9   74    6-79      8-91  (367)
497 PRK13548 hmuV hemin importer A  95.1   0.015 3.9E-07   35.9   2.6   29   50-78     24-53  (257)
498 PRK13638 cbiO cobalt transport  95.1   0.015 3.9E-07   35.9   2.5   29   50-78     23-52  (271)
499 PRK07993 DNA polymerase III su  95.1   0.021 5.4E-07   35.0   3.2   27   51-77     22-48  (334)
500 COG1126 GlnQ ABC-type polar am  95.1   0.016   4E-07   35.8   2.5   21   56-76     31-51  (240)

No 1  
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491   This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome.    ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=100.00  E-value=0  Score=877.89  Aligned_cols=430  Identities=52%  Similarity=0.887  Sum_probs=404.2

Q ss_pred             CCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             88899999862030486899999999998778864086444466566866996798886899999999970787797143
Q gi|254780829|r    7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus         7 ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      ||||+||++||+|||||++|||++|||++|||||.+++..+|+|+.||||||+||||+|||++||+|||.+++||++++|
T Consensus         1 ~tPreiV~~LD~yIiGQ~~AKk~VAiALrNRyrR~~L~~~L~~EV~PKNILMiGpTGVGKTEIARRlAKL~~aPFiKVEA   80 (463)
T TIGR00390         1 MTPREIVAELDKYIIGQDEAKKAVAIALRNRYRRSQLEEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   80 (463)
T ss_pred             CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             98435887514422063667889999988667761287111356587430432788985447999999984489146664


Q ss_pred             CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----------------------
Q ss_conf             4101212234310134678887652127899856549888868887555531143211----------------------
Q gi|254780829|r   87 TKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTAT----------------------  144 (437)
Q Consensus        87 T~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~----------------------  144 (437)
                      |+|||+||||+|||||+++|.+.|...++......+.+.+.....+|+.+.+.++...                      
T Consensus        81 tKfTEVGYVGrdVeSmvRDL~~~aV~lV~~e~~~~~r~~aee~~~erI~~~L~pp~~n~sGvknPfe~f~~~~ePN~~~e  160 (463)
T TIGR00390        81 TKFTEVGYVGRDVESMVRDLVDTAVKLVKEEKIEKVRDRAEEAAEERIVDKLLPPAKNQSGVKNPFEMFWGSEEPNEKDE  160 (463)
T ss_pred             EEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCHHHH
T ss_conf             10011021424100367878999999999988998899999999889998728889887766672230005668740246


Q ss_pred             -CHHHHHHHHHHHH--------CCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHH
Q ss_conf             -0046689889861--------68888549987535545-5443346676663210001101001354322100000102
Q gi|254780829|r  145 -SNTREVFRKKLRD--------GEISDKEIDIEVADTSS-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK  214 (437)
Q Consensus       145 -~~~~~~~~~~l~~--------~~~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (437)
                       ......+++.++.        |++++.+|+|++....+ .......|++.-.-..+++..+...++.. .+...+.++.
T Consensus       161 ~~~~~~~~~~klr~r~ahqlalGeLDd~~iei~v~~~~pf~~~e~~~pp~~e~~~~~l~~~l~~l~~~~-kkkr~l~ik~  239 (463)
T TIGR00390       161 EESSREALRKKLRERMAHQLALGELDDKEIEIEVSAKSPFSGIEILAPPGMEEMTMNLQSLLQNLGPDK-KKKRKLKIKE  239 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-CEECCCCHHH
T ss_conf             899999999999998776630366467158998613787126750588855677678999986204532-0001145699


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCC-CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             355332788863031011123678887532221002221001357-6656543321012234320466522112466642
Q gi|254780829|r  215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT  293 (437)
Q Consensus       215 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~-~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~  293 (437)
                      |...+..+++.++++.+.+...|...+|..|++|+||+||||.++ ..++.|+|.||+|||++|++||+.|.|+||.+.|
T Consensus       240 A~~~L~~Ee~~kL~d~e~~~~~A~~~vE~~GiiFIDEIDKIa~~~~e~S~~DvSrEGVQRDlLPiVEGS~V~TKyG~VkT  319 (463)
T TIGR00390       240 AKKALIAEEAAKLVDPEEIKQEAIDRVEQSGIIFIDEIDKIAKKGKESSGADVSREGVQRDLLPIVEGSTVNTKYGSVKT  319 (463)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEC
T ss_conf             99998999887336966643899999984782898530354216888678887655651011420226664310010422


Q ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Q ss_conf             02466401675422112125543345126886155424678887643468899999999875196899842499999999
Q gi|254780829|r  294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV  373 (437)
Q Consensus       294 ~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~  373 (437)
                      +|++||++|||++.||||||||+|||||++|.|+.||.+++.+||++|+|||++||++||+++||+|.||++|+..||+.
T Consensus       320 dHiLFIAaGAF~lAKPSDLIPELQGRfPirVEL~~Lt~~d~~rIL~~p~~Sl~kQY~ALl~~eGv~i~F~d~AI~~iAe~  399 (463)
T TIGR00390       320 DHILFIAAGAFHLAKPSDLIPELQGRFPIRVELEALTVDDFERILTEPKNSLIKQYQALLKVEGVNIEFSDEAIKKIAEL  399 (463)
T ss_pred             CHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHH
T ss_conf             15787675232027776666311066737787676329999996208343689999998876276403355689999999


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             9984040012372467999999867762127568776899859999989999985213454129
Q gi|254780829|r  374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL  437 (437)
Q Consensus       374 A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~l~e~~Dls~~~l  437 (437)
                      ||.+|..++|+||||||||||++|+|++||+|++++++|.||.+||.++|+.+.+|+|||||||
T Consensus       400 ay~~N~~teniGARRLHTv~E~lledisFea~D~~~~~~~I~~~YV~~kL~~~~~~~dL~~fIL  463 (463)
T TIGR00390       400 AYNVNQKTENIGARRLHTVLERLLEDISFEAPDVSGQKVTITADYVEKKLGDLVADEDLSRFIL  463 (463)
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9981644233465046689999998751266686343245078999999878873022100269


No 2  
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=100.00  E-value=0  Score=859.73  Aligned_cols=430  Identities=57%  Similarity=0.923  Sum_probs=400.9

Q ss_pred             CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             76888999998620304868999999999987788640864444665668669967988868999999999707877971
Q gi|254780829|r    5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus         5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      .+|||++|++|||+|||||++|||+||||+||||||++++..++.|+.||||||+||||||||+|||+||++++|||+++
T Consensus         2 ~~ltP~eIv~~LD~yIIGQ~~AKkavAVAlrNr~RR~~l~~~lr~Ei~pkNILmIGPTGvGKTeIARrLAkl~~aPFvkv   81 (442)
T PRK05201          2 SELTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV   81 (442)
T ss_pred             CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             98998999998536010827766787778877787531662212334643168878888667899999999848985875


Q ss_pred             ECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CCCCHHHHHHHH
Q ss_conf             434101212234310134678887652127899856549888868887555531143-----------211004668988
Q gi|254780829|r   85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGK-----------TATSNTREVFRK  153 (437)
Q Consensus        85 daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  153 (437)
                      |||+|||+||||+|||||+++|++.|...++......+...+...+.+++.+++.+.           .....+...+++
T Consensus        82 eATk~TEvGYvGrDVEsiIrdLv~~a~~~~k~~~~~~v~~~A~~~a~~ril~~L~~~~~~~~~~~~~~~~~~~tre~~r~  161 (442)
T PRK05201         82 EATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEEEESSATRQKFRK  161 (442)
T ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             21310003435643788999999999999999999999999999999999998558655555554542023678999999


Q ss_pred             HHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             98616888854998753554554433466766632100011010013543221000001023553327888630310111
Q gi|254780829|r  154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV  233 (437)
Q Consensus       154 ~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  233 (437)
                      .++.+.+++.+|++.++..+.....  .+.+......++.....+.++. ..+....+++.|...+..+++.++++.+.+
T Consensus       162 ~Lr~G~Ldd~~IeIev~~~~~~~~~--~~~g~~~~~~~l~~~~~~~~~~-~~kkr~~tVkeA~~iL~~eEa~klid~d~v  238 (442)
T PRK05201        162 KLREGELDDKEIEIEVADAPGVEIM--GPPGMEEMGNQLQDMFGNLGPK-KKKKRKLKVKEARKLLIEEEAAKLVDQEEI  238 (442)
T ss_pred             HHHCCCCCCCEEEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCC-CCCEEEEEHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             9865886655578861577777777--8875155666799876402788-874046469999999999999862488999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf             23678887532221002221001357665654332101223432046652211246664202466401675422112125
Q gi|254780829|r  234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL  313 (437)
Q Consensus       234 ~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~gli  313 (437)
                      ...|...+|..||+|+|++|||+.++...+.|+|.+|+|+++++++|++.|.|+|+.+.|+|++|||+||||..||++||
T Consensus       239 ~~eAi~~aEq~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G~V~TdhILFIasGAFh~sKPSDLI  318 (442)
T PRK05201        239 KQEAIERVEQNGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVAKPSDLI  318 (442)
T ss_pred             HHHHHHHHHHCCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
T ss_conf             99999988761704511465653035788989773307888788753885556777602550345504500147820224


Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             54334512688615542467888764346889999999987519689984249999999999840400123724679999
Q gi|254780829|r  314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM  393 (437)
Q Consensus       314 pE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~  393 (437)
                      |||+||||++|.|++|++++|++|||||+|||++||++||+++||+|+||++|+++||+.|+++|++++|+|||||||||
T Consensus       319 PEl~GRlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGAR~L~tI~  398 (442)
T PRK05201        319 PELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVM  398 (442)
T ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf             98717550588824499999999967861578999999986249679984799999999999851447667737889999


Q ss_pred             HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99867762127568776899859999989999985213454129
Q gi|254780829|r  394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL  437 (437)
Q Consensus       394 E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~l~e~~Dls~~~l  437 (437)
                      |++|+|+||++|++++++|.||+++|+++++++++++|||||||
T Consensus       399 E~vl~d~~Fe~p~~~~~~v~I~~~~V~~~l~~i~~~~DlskyIL  442 (442)
T PRK05201        399 EKLLEDISFEAPDRSGEKITIDAAYVDEKLGDLVKDEDLSRYIL  442 (442)
T ss_pred             HHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCHHHCC
T ss_conf             99989861468899997799889999999988763556054209


No 3  
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00  E-value=0  Score=803.79  Aligned_cols=432  Identities=59%  Similarity=0.934  Sum_probs=410.1

Q ss_pred             CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             76888999998620304868999999999987788640864444665668669967988868999999999707877971
Q gi|254780829|r    5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus         5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      .+|||++|+++||+|||||++|||++|+|++|||||.+++..+|+|+.||||||+||||+|||++||+||+.+++||+++
T Consensus         2 ~~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV   81 (444)
T COG1220           2 SEMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV   81 (444)
T ss_pred             CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             98887999999876740717778899999998999975478776225755358888888768899999999848983788


Q ss_pred             ECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----------CCCHHHHHHHH
Q ss_conf             4341012122343101346788876521278998565498888688875555311432-----------11004668988
Q gi|254780829|r   85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKT-----------ATSNTREVFRK  153 (437)
Q Consensus        85 daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  153 (437)
                      +||+|||+||||+|||||+++|++.+...++...+..+...+...+.+|+.+++.+..           ...++...+..
T Consensus        82 EATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rk  161 (444)
T COG1220          82 EATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRK  161 (444)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             76421340325645899999999999999999999999999999999999998669875546667300002679999999


Q ss_pred             HHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             98616888854998753554554433466766632100011010013543221000001023553327888630310111
Q gi|254780829|r  154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV  233 (437)
Q Consensus       154 ~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  233 (437)
                      .|+.+++++.+|++.+............+++......+++..+...++. ..+..+.+++.|...+..+++.++++.+.+
T Consensus       162 kLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~-kkkkrk~~Vk~A~~~L~~eea~KLid~e~i  240 (444)
T COG1220         162 KLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGK-KKKKRKLKVKEAKKLLIEEEADKLIDQEEI  240 (444)
T ss_pred             HHHCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEEEHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             9975887761799997226787534689985789999999999864688-730366569999998777788762699999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf             23678887532221002221001357665654332101223432046652211246664202466401675422112125
Q gi|254780829|r  234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL  313 (437)
Q Consensus       234 ~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~gli  313 (437)
                      ...|....+.+|++|+|++|||+.++...+.++|.+|+|++++|++|++.|+|+||.+.|+|++||++||||..||+++|
T Consensus       241 ~~eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLi  320 (444)
T COG1220         241 KQEAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLI  320 (444)
T ss_pred             HHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCEECCCHHHCC
T ss_conf             99999998856908973466787437889988664320102103105754431544401443788714820037813217


Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             54334512688615542467888764346889999999987519689984249999999999840400123724679999
Q gi|254780829|r  314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM  393 (437)
Q Consensus       314 pE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~  393 (437)
                      ||++||||++|.|++|+.+|+++|||||++||++||++||+++||+|.||++|++.||+.|+++|..++|+|||+|||||
T Consensus       321 PELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvl  400 (444)
T COG1220         321 PELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVL  400 (444)
T ss_pred             HHHCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             66627773488704489989999963760789999999973158348853799999999999855430001178899999


Q ss_pred             HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99867762127568776899859999989999985213454129
Q gi|254780829|r  394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL  437 (437)
Q Consensus       394 E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~l~e~~Dls~~~l  437 (437)
                      |++|+|++|++|++.+.+|.||++||+++++.|.+|+|||||||
T Consensus       401 ErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l~~n~DLsryIL  444 (444)
T COG1220         401 ERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDLVANEDLSRFIL  444 (444)
T ss_pred             HHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCHHHHHC
T ss_conf             99998707058778997589758999999987751741565419


No 4  
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487   ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent  molecular chaperone and is the regulatory subunit of the ClpXP protease .   ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates .    The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA .  ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=100.00  E-value=0  Score=750.76  Aligned_cols=342  Identities=28%  Similarity=0.392  Sum_probs=288.2

Q ss_pred             CHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCC----CCCCC------------CCCCCCCEEEECCCCCCHHHHHH
Q ss_conf             889999986203048689999999999877886408----64444------------66566866996798886899999
Q gi|254780829|r    8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLR------------DELMPKNILLVGPTGVGKTAISR   71 (437)
Q Consensus         8 tP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~----~~~~~------------~e~~psNiLLiGPtGtGKTlLAk   71 (437)
                      ||++|++|||.||||||+|||+|||||||||||++.    ...+.            .|+.||||||||||||||||||+
T Consensus        91 ~P~eik~~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNILLiGPTGSGKTLLAq  170 (452)
T TIGR00382        91 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNILLIGPTGSGKTLLAQ  170 (452)
T ss_pred             CCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
T ss_conf             82799997213612310105254324112466653243045558840002354444433300662454688852689999


Q ss_pred             HHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             99997078779714341012122343101346788876521278998565498888688875555311432110046689
Q gi|254780829|r   72 RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF  151 (437)
Q Consensus        72 tLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (437)
                      |||+.|||||+++|||++|||||||||||+++.+|+++|+||+++|++||+|++.++++.++.-  ...-.++..++++|
T Consensus       171 TLA~~L~VPfAiADATtLTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSE--N~SITRDVSGEGVQ  248 (452)
T TIGR00382       171 TLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSE--NPSITRDVSGEGVQ  248 (452)
T ss_pred             HHHHHCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCC--CCEEEEEECCCHHH
T ss_conf             9998738874211111020066424228899999987414552452785089842231012157--78011221755499


Q ss_pred             HHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCH
Q ss_conf             88986168888549987535545544334667666321000110100135432210000010235533278886303101
Q gi|254780829|r  152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD  231 (437)
Q Consensus       152 ~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  231 (437)
                      |++|+..+|+-..|-                      ..                                +.+|++..+
T Consensus       249 QALLKi~EGTvA~vP----------------------Pq--------------------------------GGRKHP~~~  274 (452)
T TIGR00382       249 QALLKIIEGTVANVP----------------------PQ--------------------------------GGRKHPQQE  274 (452)
T ss_pred             HHHHHHHHCCEEEEC----------------------CC--------------------------------CCCCCCCCC
T ss_conf             999987603234317----------------------54--------------------------------488688657


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC-CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf             11236788875322210022210013576656-54332101223432046652211246664202466401675422112
Q gi|254780829|r  232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA  310 (437)
Q Consensus       232 ~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~-~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~  310 (437)
                      .+..++.+++|.||+||.+....|..+....+ ++++..........                ..-..+....++||..|
T Consensus       275 ~iqiDTs~ILFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~~~~~~~----------------~~~~~L~~v~~~DL~kF  338 (452)
T TIGR00382       275 FIQIDTSNILFICGGAFVGLEKIIKKRTEKKSSIGFGAEVKKKSKEK----------------SEEELLRQVEPEDLVKF  338 (452)
T ss_pred             EEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH----------------HHHHHHHHHCHHHHHHH
T ss_conf             68864764001105434448999988745553335455210045787----------------89999975171112210


Q ss_pred             CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             12554334512688615542467888764346889999999987519689984249999999999840400123724679
Q gi|254780829|r  311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ  390 (437)
Q Consensus       311 glipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~Lr  390 (437)
                      ||||||+||+|+++.|++|++|+|++||++|||||++||+.||++|+|+|.|+++|+++||+.|+++||     ||||||
T Consensus       339 GLIPEfIGRLPV~a~L~~L~~eAL~~IL~~PkNAlvKQY~~lf~ld~VeL~F~~eAl~~IA~~A~~RkT-----GARGLR  413 (452)
T TIGR00382       339 GLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKLDNVELEFEEEALKAIAKKALERKT-----GARGLR  413 (452)
T ss_pred             CCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-----CCCHHH
T ss_conf             555101105340202787887899998525444488999997164561134558889999999985076-----751578


Q ss_pred             HHHHHHHHHHHCCCCCC-CCCEEEECHHHHHHHHHHH
Q ss_conf             99999867762127568-7768998599999899999
Q gi|254780829|r  391 TVMERVLEDISFSASDL-QEKTVVIDAEYVRLHIGDF  426 (437)
Q Consensus       391 tI~E~~l~d~~fe~p~~-~~~~v~Id~~~V~~~l~~l  426 (437)
                      +|+|.+|+|.|||.|+. +..+|+||+++|.+...+.
T Consensus       414 sI~E~~lLDvMfeLPs~~~~~kv~it~~~v~~~~~p~  450 (452)
T TIGR00382       414 SIVEGLLLDVMFELPSLEDLEKVVITKETVLKQSEPL  450 (452)
T ss_pred             HHHHHHHHHHCCCCCCHHCCCEEEEEHHHHCCCCCCC
T ss_conf             9999998753147886115756787077642664456


No 5  
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00  E-value=0  Score=692.86  Aligned_cols=343  Identities=29%  Similarity=0.396  Sum_probs=282.5

Q ss_pred             CCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             8889999986203048689999999999877886408644--44665668669967988868999999999707877971
Q gi|254780829|r    7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus         7 ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~--~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      .||++|++|||+||||||+|||+|||||||||||++....  ...|+.||||||+|||||||||||||||++++|||+++
T Consensus        61 p~P~eI~~~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~ia  140 (411)
T PRK05342         61 PTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAIA  140 (411)
T ss_pred             CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             99799999862140284888899999999999998602133566521345389989999778899999999869998998


Q ss_pred             ECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf             43410121223431013467888765212789985654988886888755553114321100466898898616888854
Q gi|254780829|r   85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE  164 (437)
Q Consensus        85 daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  164 (437)
                      |||+|||+||||+|||+++.||+++|++|+++|++||++.+.++++..+..  ..+..++..+.++|+.+|+..+++...
T Consensus       141 DAT~lTEaGYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~--~~s~trDVSgEGVQqaLLkiiEGt~v~  218 (411)
T PRK05342        141 DATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSE--NPSITRDVSGEGVQQALLKILEGTVAS  218 (411)
T ss_pred             EECEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHCCCEEC
T ss_conf             612001267456079999999999828889988368288850234542478--888877765124899999987587141


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             99875355455443346676663210001101001354322100000102355332788863031011123678887532
Q gi|254780829|r  165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY  244 (437)
Q Consensus       165 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  244 (437)
                      |..    .               +.   ...+.+.+....+.+++|++.+||.++......|+-                
T Consensus       219 vp~----~---------------gg---rkhp~~~~~~idT~nILFI~gGAF~GL~~II~~R~~----------------  260 (411)
T PRK05342        219 VPP----Q---------------GG---RKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLG----------------  260 (411)
T ss_pred             CCC----C---------------CC---CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCC----------------
T ss_conf             188----8---------------77---778776516761471799911553358999986357----------------


Q ss_pred             HHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf             22100222100135766565433210122343204665221124666420246640167542211212554334512688
Q gi|254780829|r  245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV  324 (437)
Q Consensus       245 ~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v  324 (437)
                                      ..+++++..-...                 .......++....+.|+..|||||||+||||+++
T Consensus       261 ----------------~~~iGF~~~~~~~-----------------~~~~~~~~l~~v~p~DLi~fGlIPEfiGRlPViv  307 (411)
T PRK05342        261 ----------------KSGIGFGAEVKSK-----------------DEKDLGELLAQVEPEDLVKFGLIPEFIGRLPVVA  307 (411)
T ss_pred             ----------------CCCCCCCCCCCCC-----------------CCCCHHHHHHHCCHHHHHHCCCCHHHHCCCCEEE
T ss_conf             ----------------8876778876641-----------------1000567876279878887388377614664054


Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf             61554246788876434688999999998751968998424999999999984040012372467999999867762127
Q gi|254780829|r  325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA  404 (437)
Q Consensus       325 ~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe~  404 (437)
                      +|++|++++|++|||||+|||++||++||+++||+|+||++|+++||++|++++|     ||||||+|||++|+|+||++
T Consensus       308 ~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~t-----GARgLRsIlE~iLld~MFel  382 (411)
T PRK05342        308 TLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKT-----GARGLRSILEEVLLDVMFEL  382 (411)
T ss_pred             ECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHCCC
T ss_conf             6244799999999658741599999999975496799868999999999998475-----74577999999978875448


Q ss_pred             CCC-CCCEEEECHHHHHHHHHHHH
Q ss_conf             568-77689985999998999998
Q gi|254780829|r  405 SDL-QEKTVVIDAEYVRLHIGDFP  427 (437)
Q Consensus       405 p~~-~~~~v~Id~~~V~~~l~~l~  427 (437)
                      |+. +++++.||+++|+++..+++
T Consensus       383 Ps~~~v~~v~It~~~V~~~~~P~~  406 (411)
T PRK05342        383 PSREDVEKVVITEEVVEGKSKPLL  406 (411)
T ss_pred             CCCCCCCEEEECHHHHCCCCCCEE
T ss_conf             898997099988799779998269


No 6  
>KOG0745 consensus
Probab=100.00  E-value=0  Score=662.27  Aligned_cols=349  Identities=27%  Similarity=0.372  Sum_probs=278.5

Q ss_pred             CCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCC-----------------------------------------
Q ss_conf             888999998620304868999999999987788640864-----------------------------------------
Q gi|254780829|r    7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-----------------------------------------   45 (437)
Q Consensus         7 ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~-----------------------------------------   45 (437)
                      .||++|++|||+|||||+.|||+|||||||||||+..+.                                         
T Consensus       134 P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~  213 (564)
T KOG0745         134 PTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAK  213 (564)
T ss_pred             CCHHHHHHHHHHHEECHHHHHHEEEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
T ss_conf             88699998866661035542202320356778887413488888876544303677885200254320136554210103


Q ss_pred             -----CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----444665668669967988868999999999707877971434101212234310134678887652127899856
Q gi|254780829|r   46 -----DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD  120 (437)
Q Consensus        46 -----~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~  120 (437)
                           +...+++||||||+||||+||||||+|||+++||||++||||++||+||||+||||+|++|++.|++++++|++|
T Consensus       214 ~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqG  293 (564)
T KOG0745         214 ALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQG  293 (564)
T ss_pred             CCCCCCCCEEEECCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCC
T ss_conf             55543454154035479977888764389999999708876873255220055345429999999999725789988267


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf             54988886888755553114321100466898898616888854998753554554433466766632100011010013
Q gi|254780829|r  121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM  200 (437)
Q Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (437)
                      |++.+.++++.+...  ..+..++..++++|+.+|++.+++-.+|    +..+.+.                  ......
T Consensus       294 IVflDEvDKi~~~~~--~i~~~RDVsGEGVQQaLLKllEGtvVnV----peK~~~~------------------~~rgd~  349 (564)
T KOG0745         294 IVFLDEVDKITKKAE--SIHTSRDVSGEGVQQALLKLLEGTVVNV----PEKGSRR------------------KPRGDT  349 (564)
T ss_pred             EEEEEHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCEECC----CCCCCCC------------------CCCCCE
T ss_conf             388760124413676--5454445662669999999852627702----6778777------------------899985


Q ss_pred             CCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf             54322100000102355332788863031011123678887532221002221001357665654332101223432046
Q gi|254780829|r  201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE  280 (437)
Q Consensus       201 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e  280 (437)
                      ....+.+++|+..+||.+++...++|+-+              ..++|...-.+               ++....-.-. 
T Consensus       350 vqiDTtnILFiasGAF~~Ldk~I~rR~~d--------------~slGFg~~s~~---------------~vr~~~~~~s-  399 (564)
T KOG0745         350 VQIDTTNILFIASGAFVGLDKIISRRLDD--------------KSLGFGAPSSK---------------GVRANMATKS-  399 (564)
T ss_pred             EEEECCCEEEEECCCCCCHHHHHHHHHCC--------------HHCCCCCCCCC---------------CCHHHCCCCC-
T ss_conf             89713666888034323569898876300--------------00156788874---------------2001103466-


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             65221124666420246640167542211212554334512688615542467888764346889999999987519689
Q gi|254780829|r  281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL  360 (437)
Q Consensus       281 ~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L  360 (437)
                            ...........++......|+..|||||||+||||++|+|++|++++|++|||||+|+|+.||+.+|.+++|+|
T Consensus       400 ------~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L  473 (564)
T KOG0745         400 ------GVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVEL  473 (564)
T ss_pred             ------CCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCEEE
T ss_conf             ------73046778899986346321355267287716652576524268888999873554668999999855577469


Q ss_pred             EECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHH
Q ss_conf             984249999999999840400123724679999998677621275687768998599999
Q gi|254780829|r  361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR  420 (437)
Q Consensus       361 ~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~  420 (437)
                      .||++|++.||+.|+++||     ||||||+|||++|+|+|||+|+|++..|+||+++|+
T Consensus       474 ~fTe~Al~~IAq~Al~r~T-----GARgLRsIlE~~LleamfevPGSdI~~V~Vdee~v~  528 (564)
T KOG0745         474 HFTEKALEAIAQLALKRKT-----GARGLRSILESLLLEAMFEVPGSDIKAVLVDEEAVK  528 (564)
T ss_pred             EECHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHC
T ss_conf             8669999999999876143-----467899999999764014578875479996178845


No 7  
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00  E-value=0  Score=661.09  Aligned_cols=345  Identities=27%  Similarity=0.380  Sum_probs=282.2

Q ss_pred             CCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             888999998620304868999999999987788640864-4446656686699679888689999999997078779714
Q gi|254780829|r    7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE   85 (437)
Q Consensus         7 ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~d   85 (437)
                      -||++|+++||+||||||+|||+|||||||||||++... ....|+.||||||+|||||||||||+|||+.+||||.++|
T Consensus        50 PtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD  129 (408)
T COG1219          50 PTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD  129 (408)
T ss_pred             CCHHHHHHHHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf             98699999865243262543103466410688998604887763532031799888997577999999998489847514


Q ss_pred             CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf             34101212234310134678887652127899856549888868887555531143211004668988986168888549
Q gi|254780829|r   86 VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI  165 (437)
Q Consensus        86 aT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i  165 (437)
                      ||++||+||||+|||+++.||+++|++|+++|++||++++.++++..+.-  .....++..+.++|+.+|+..+++...|
T Consensus       130 ATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSe--n~SITRDVSGEGVQQALLKiiEGTvasV  207 (408)
T COG1219         130 ATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSE--NPSITRDVSGEGVQQALLKIIEGTVASV  207 (408)
T ss_pred             CCCHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCC--CCCCCCCCCCHHHHHHHHHHHCCCEECC
T ss_conf             44121066355008999999998764588888288599851025420578--9872343673589999999970751023


Q ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             98753554554433466766632100011010013543221000001023553327888630310111236788875322
Q gi|254780829|r  166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG  245 (437)
Q Consensus       166 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  245 (437)
                      ..                      .+...++.+-+-...+.+++|++.+||.++......|                   
T Consensus       208 PP----------------------qGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R-------------------  246 (408)
T COG1219         208 PP----------------------QGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKR-------------------  246 (408)
T ss_pred             CC----------------------CCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHH-------------------
T ss_conf             99----------------------9888798420488737634678244010399999986-------------------


Q ss_pred             HHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             21002221001357665654332101223432046652211246664202466401675422112125543345126886
Q gi|254780829|r  246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH  325 (437)
Q Consensus       246 ~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~  325 (437)
                                   ....+++++.+....+.                ....-.++....+.|+..|||||||+||+|++++
T Consensus       247 -------------~~~~~iGF~a~~~~~~~----------------~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~  297 (408)
T COG1219         247 -------------LGKKGIGFGAEVKSKSK----------------KKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIAT  297 (408)
T ss_pred             -------------CCCCCCCCCCCCCCHHH----------------HHHHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEE
T ss_conf             -------------26874245664453444----------------4128899875486878870883887266632646


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             15542467888764346889999999987519689984249999999999840400123724679999998677621275
Q gi|254780829|r  326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS  405 (437)
Q Consensus       326 l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe~p  405 (437)
                      |++|++++|++||++|||+|++||++||+++||+|+|+++|+++||++|++++|     ||||||+|||.+|+|.|||+|
T Consensus       298 L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkT-----GARGLRsI~E~~lld~MfelP  372 (408)
T COG1219         298 LEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKT-----GARGLRSIIEELLLDVMFELP  372 (408)
T ss_pred             HHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHCC
T ss_conf             101599999999726517899999999644691699748999999999998433-----535799999999999885278


Q ss_pred             CCC-CCEEEECHHHHHHHHHHHHH
Q ss_conf             687-76899859999989999985
Q gi|254780829|r  406 DLQ-EKTVVIDAEYVRLHIGDFPS  428 (437)
Q Consensus       406 ~~~-~~~v~Id~~~V~~~l~~l~e  428 (437)
                      +.+ +.+|.||+++|++...+++.
T Consensus       373 s~~~v~~v~I~~~~v~~~~~p~l~  396 (408)
T COG1219         373 SLEDVEKVVITEEVVDGNAEPLLI  396 (408)
T ss_pred             CCCCCEEEEEEHHHHCCCCCCEEE
T ss_conf             867850899768884788887276


No 8  
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936   Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH.    FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=100.00  E-value=0  Score=469.80  Aligned_cols=358  Identities=14%  Similarity=0.097  Sum_probs=326.8

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCC----CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCC
Q ss_conf             30486899999999998778864086444466----56686699679888689999999997078779714341012122
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY   94 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e----~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gy   94 (437)
                      -|-|+||||.=|---|      -+++.+.|..    .+||||||+|||||||||||||+|||++||||+++||+|.||| 
T Consensus        60 DVAG~dEAKeEl~EiV------dFLK~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAGEA~VPFF~iSGSdFVEMF-  132 (505)
T TIGR01241        60 DVAGIDEAKEELVEIV------DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF-  132 (505)
T ss_pred             CCCCCHHHHHHHHHHH------HHCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEECCCCEEECC-
T ss_conf             4445323334333134------222696379872788987147317878424678875202588962474076101112-


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             343101346788876521278998565498888688875555-3114321100466898898616888854998753554
Q gi|254780829|r   95 VGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD-ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS  173 (437)
Q Consensus        95 vG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~  173 (437)
                          |+++++|++|.|..+.++|||+||+|+|+++++.|.++ .++||+++++|.||++.+|+.+...+..|.+..+|+|
T Consensus       133 ----VGVGASRVRDLFeqAK~nAPCIIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~~~gvIv~AATNRP  208 (505)
T TIGR01241       133 ----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRP  208 (505)
T ss_pred             ----CCCCCEEHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCEEEEEECCCC
T ss_conf             ----0564000144579999718970564010000333564366765413554332331331785898857998504884


Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             55443346676663210001101001354322100000102355332788863031011123678887532221002221
Q gi|254780829|r  174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD  253 (437)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~  253 (437)
                      +-+++.  .++|+++++++....|...++.....+|.....--+..+....+|.|+++++++.|+.+||++.+|.+....
T Consensus       209 DvLD~A--LLRPGRFDRQv~V~~PD~~GR~~IL~VH~~~~kLa~~vdL~~~Ar~TPGfSGADLaNl~NEAALlAAR~n~~  286 (505)
T TIGR01241       209 DVLDPA--LLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKT  286 (505)
T ss_pred             CCCCCC--CCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             116510--068787445134588874678999999854889970247799970156876788999999999998617986


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC-CCCCEEEEECC-CCCH
Q ss_conf             001357665654332101223432046652211246664202466401675422112125543-34512688615-5424
Q gi|254780829|r  254 KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI-QGRFPVRVHLK-SLNK  331 (437)
Q Consensus       254 ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~-~GR~p~~v~l~-~L~~  331 (437)
                      .|.+.+...+.|+...|++++++.+++.++..|+|||+||+.+.|.++.+++++|+|++|++- .++....+|-+ ....
T Consensus       287 ~i~~~~~eeA~Drv~~G~ekKsr~is~~eK~~vAYHEaGHAl~G~~~~~~DpV~KvTIIPRG~~AlG~t~~lP~~~D~~l  366 (505)
T TIGR01241       287 EITMNDIEEAVDRVIAGLEKKSRVISEKEKKIVAYHEAGHALVGLLLKDADPVHKVTIIPRGQGALGYTQFLPEEGDKYL  366 (505)
T ss_pred             EECHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEEEECHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCC
T ss_conf             56288898787765227667885326777422201115789999735344752325631478441551683677444100


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECHHH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             6788876434688999999998751--9689984249---9999999998404001237246799999986776212
Q gi|254780829|r  332 SDFRLILTDTESNLILQYKELMKTE--GIILDFTEDS---IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS  403 (437)
Q Consensus       332 ~~l~~IL~epk~~l~~q~~~lf~~~--~v~L~ft~~A---l~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe  403 (437)
                      ..-.+++.+...+|.++..+..-.-  .|    |.+|   +...+++|.+|.|   .+|       |+..+..+.|+
T Consensus       367 ~~k~~L~~~i~~~lGGRaAEe~~fG~~~v----ttGA~nD~~~AT~iAr~MVT---~~G-------MS~klG~v~~~  429 (505)
T TIGR01241       367 YTKKQLLAKIAVLLGGRAAEEIIFGEEEV----TTGASNDLKQATNIARAMVT---EWG-------MSEKLGPVAYG  429 (505)
T ss_pred             CCHHHHHHHHHHHHHHHHEEEEECCCCCC----CCCCCHHHHHHHHHHHHHCC---CCC-------CCCCCCCCEEC
T ss_conf             36889999999873203100223078873----23621158999999997315---336-------74200451220


No 9  
>CHL00176 ftsH cell division protein; Validated
Probab=100.00  E-value=0  Score=337.29  Aligned_cols=348  Identities=14%  Similarity=0.058  Sum_probs=292.1

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCC
Q ss_conf             304868999999999987788640864444----6656686699679888689999999997078779714341012122
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLR----DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY   94 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~----~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gy   94 (437)
                      -|.|+|+||.-|.-.|-      ++..+.+    .-.+|+||||+|||||||||||||+|++++|||++++||+|.||+ 
T Consensus       178 DVaG~~eaK~el~Eivd------fLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF~~~sgs~F~e~~-  250 (631)
T CHL00176        178 DVAGVEEAKEELEEVVT------FLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF-  250 (631)
T ss_pred             CCCCCHHHHHHHHHHHH------HHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEHHHHHHHH-
T ss_conf             22885899999999999------83595887644996896589889899878899999856558846998837855642-


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             34310134678887652127899856549888868887555531143211004668988986168888549987535545
Q gi|254780829|r   95 VGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS  174 (437)
Q Consensus        95 vG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~  174 (437)
                          |+++++|+++.|..+.+.|||+||+++++..+.+|..+..+++++.+++.++++.+|+.++.....|.+..++++.
T Consensus       251 ----vGvga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~~~gViViaATNrpd  326 (631)
T CHL00176        251 ----VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEGNKGVIVIAATNRID  326 (631)
T ss_pred             ----CCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf             ----1555899999999998639969998710120114789888985089999999999842888788869998258855


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             54433466766632100011010013543221000001023553327888630310111236788875322210022210
Q gi|254780829|r  175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK  254 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~k  254 (437)
                      .+++.  ..+++++++.+....|...++.....++.......+.++...+++.++++++++.++.+||+...+.+...+.
T Consensus       327 ~LDpA--LlRPGRFDR~I~V~lPD~~gR~~IL~vh~k~~~l~~dvdl~~iA~~T~GfSGAdLanlvNEAal~AaR~~~~~  404 (631)
T CHL00176        327 ILDAA--LLRPGRFDRQVTVSLPDFEGRLDILKVHARNKKLAEDVSLELIARRTPGFSGADLANLLNEAAILAARRRKNQ  404 (631)
T ss_pred             CCCHH--HCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             45686--6268877549982698989999999999707866653009999862699867888769999999999847776


Q ss_pred             HCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             01357665654332101223432046652211246664202466401675422112125543345126886155424678
Q gi|254780829|r  255 IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF  334 (437)
Q Consensus       255 i~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l~~L~~~~l  334 (437)
                      |...+...+.+....|.++. ..+.+.++..++||+++|+.+.+++.+.++..|.+++++.-.+++....+-+.......
T Consensus       405 it~~d~~~AidrV~~G~ek~-~~~~~~ekr~vAyHEAGHAlVa~ll~~~dpV~KVTIiPRG~AlG~t~~~P~ed~~l~Tk  483 (631)
T CHL00176        405 ITMSEIDEAIDRVIAGMEGT-PLADSKIKRLIAYHEVGHAIVGTLLPEHDPVQKVTLIPRGNARGLTWFTPNEDQSLISR  483 (631)
T ss_pred             CCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCHH
T ss_conf             47889999999997165666-77898999999999999999999778987603899812788650577766433233429


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH---HHHHHHHHHHHHCCCCCCC
Q ss_conf             88764346889999999987519689984249---9999999998404001237
Q gi|254780829|r  335 RLILTDTESNLILQYKELMKTEGIILDFTEDS---IDALADVAVNLNSTVGDIG  385 (437)
Q Consensus       335 ~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~A---l~~IA~~A~~~~t~~~~~G  385 (437)
                      ..++.+..-+|.++.++.+-...-  +.|.+|   |+..+++|..|-+   .+|
T Consensus       484 ~eL~~~I~vlLGGRaAEEivfG~~--~vTTGAs~DL~~AT~iAr~MV~---~~G  532 (631)
T CHL00176        484 SQLLARIVGALGGRAAEEVVFGST--EVTTGASNDLQQVTSLARQMVT---RFG  532 (631)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHH---HHC
T ss_conf             999999999762577655323898--8777727899999999999999---858


No 10 
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00  E-value=0  Score=342.71  Aligned_cols=347  Identities=15%  Similarity=0.067  Sum_probs=295.0

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCC
Q ss_conf             304868999999999987788640864444----6656686699679888689999999997078779714341012122
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLR----DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY   94 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~----~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gy   94 (437)
                      -|.|+|+||.-|.-.|-      ++..+.+    .-.+|+||||+||||||||||||++|++++|||++++||+|.|++ 
T Consensus       153 DVaG~~eaK~el~EiVd------fLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~~~sgsef~e~~-  225 (644)
T PRK10733        153 DVAGCDEAKEEVAELVE------YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF-  225 (644)
T ss_pred             CCCCCHHHHHHHHHHHH------HHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHEE-
T ss_conf             40897899999999999------81297999974997998517779899877899999864559808997847730222-


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             34310134678887652127899856549888868887555531143211004668988986168888549987535545
Q gi|254780829|r   95 VGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS  174 (437)
Q Consensus        95 vG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~  174 (437)
                          |+++.+|+++.|..+.+.|+|+||+++++..+..|.....+++++..++.++++.+|+.+...+..+.+..++++.
T Consensus       226 ----vGvga~rVR~lF~~Ar~~aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaATNrpd  301 (644)
T PRK10733        226 ----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD  301 (644)
T ss_pred             ----EECCHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf             ----5306899999999999669979999532203666789888983288878999999954888878769996269975


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             54433466766632100011010013543221000001023553327888630310111236788875322210022210
Q gi|254780829|r  175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK  254 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~k  254 (437)
                      .+++.  ..+++++++.+....|...++.....++.......+.++.....+.++++++++.++.+|++...+.+...+.
T Consensus       302 ~LD~A--LlRPGRFDr~I~V~lPd~~~R~~ILkvh~~~~~l~~dvdl~~lA~~T~GfSGADLaNlvNEAAl~AaR~~k~~  379 (644)
T PRK10733        302 VLDPA--LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV  379 (644)
T ss_pred             CCCHH--HHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHCCCC
T ss_conf             54777--7168886559997798988999999999648877731158988445998670333259999999998708754


Q ss_pred             HCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf             01357665654332101223432046652211246664202466401675422112125543345126886155424678
Q gi|254780829|r  255 IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF  334 (437)
Q Consensus       255 i~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l~~L~~~~l  334 (437)
                      |.+.++..+.+....|.+++...+.+.++..++||+++|+.+.+++....+..|.+++++.-.+++....+-+.......
T Consensus       380 It~~d~e~A~drV~~G~ekks~~~se~ek~~vAyHEAGHAlva~~l~~~dpv~KVTIiPRG~AlG~t~~~P~ed~~~~tk  459 (644)
T PRK10733        380 VSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASR  459 (644)
T ss_pred             CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEECCCCCHHHHHH
T ss_conf             30766899888851153456666899999999999998999999768988721799654787677311168510004259


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--CCCEEEECHHH---HHHHHHHHHHHHCCCCCCC
Q ss_conf             887643468899999999875--19689984249---9999999998404001237
Q gi|254780829|r  335 RLILTDTESNLILQYKELMKT--EGIILDFTEDS---IDALADVAVNLNSTVGDIG  385 (437)
Q Consensus       335 ~~IL~epk~~l~~q~~~lf~~--~~v~L~ft~~A---l~~IA~~A~~~~t~~~~~G  385 (437)
                      ..++....-+|.++.++.+-.  +.|    |.+|   |+..+++|..|.+   .+|
T Consensus       460 ~~l~~~I~vlLGGRaAEel~fG~~~v----TTGAsnDL~~AT~iAr~MV~---~~G  508 (644)
T PRK10733        460 QKLESQISTLYGGRLAEEIIYGPEHV----STGASNDIKVATNLARNMVT---QWG  508 (644)
T ss_pred             HHHHHHHHHHHCHHHHHHHHHCCCCC----CCCCHHHHHHHHHHHHHHHH---HHC
T ss_conf             99998778863418877666079887----76827889999999999999---968


No 11 
>KOG0734 consensus
Probab=100.00  E-value=0  Score=318.56  Aligned_cols=359  Identities=14%  Similarity=0.096  Sum_probs=302.4

Q ss_pred             CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             76888999998620304868999999999987788640864444----66566866996798886899999999970787
Q gi|254780829|r    5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR----DELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus         5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~----~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      .--.|.++++--=+.|-|-||||.-|-.-|  +|    +..+.+    ....||||||+||||||||||||++|++++||
T Consensus       291 ~ev~p~~~~nv~F~dVkG~DEAK~ELeEiV--ef----LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP  364 (752)
T KOG0734         291 SEVDPEQMKNVTFEDVKGVDEAKQELEEIV--EF----LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP  364 (752)
T ss_pred             CCCCHHHHCCCCCCCCCCHHHHHHHHHHHH--HH----HCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf             446846641655002147278999999999--98----609087643147588853876899975569999860556897


Q ss_pred             EEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             79714341012122343101346788876521278998565498888688875555311432110046689889861688
Q gi|254780829|r   81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI  160 (437)
Q Consensus        81 F~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (437)
                      ||.++||+|-||+     |+++++|+++.|..+.++|||+||+++++.++.+|......   -..++.++++..|+.+.-
T Consensus       365 FF~~sGSEFdEm~-----VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~---y~kqTlNQLLvEmDGF~q  436 (752)
T KOG0734         365 FFYASGSEFDEMF-----VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH---YAKQTLNQLLVEMDGFKQ  436 (752)
T ss_pred             EEECCCCCHHHHH-----HCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHH---HHHHHHHHHHHHHCCCCC
T ss_conf             4741662044542-----20148999999999873498599972002205667862778---999899999998428676


Q ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             88549987535545544334667666321000110100135432210000010235533278886303101112367888
Q gi|254780829|r  161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM  240 (437)
Q Consensus       161 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~  240 (437)
                      ....|.+..++.+..++.  ...+++++++++....|...|+......+.....--..++...++|.++++++++.++.+
T Consensus       437 NeGiIvigATNfpe~LD~--AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlV  514 (752)
T KOG0734         437 NEGIIVIGATNFPEALDK--ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLV  514 (752)
T ss_pred             CCCEEEEECCCCHHHHHH--HHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCHHHHHHHH
T ss_conf             886699951687455568--734887553367468977332899999998348765677876722688987657899888


Q ss_pred             HHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             75322210022210013576656543321012234320466522112466642024664016754221121255433451
Q gi|254780829|r  241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF  320 (437)
Q Consensus       241 ~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~  320 (437)
                      |.++.-|..+....+.+++...+.|+..+|.+++...+.++.+..|+||+.+|+.+.+...++.+..|.++|+++-.-+.
T Consensus       515 NqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~  594 (752)
T KOG0734         515 NQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGH  594 (752)
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEECCCCCCCCC
T ss_conf             89999998637401108877654433211521133446814544344332672588751278866430253257766663


Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHCCCEEEECHHHHHHHHHHHHHHHCC
Q ss_conf             2688615542467888764346889999999--98751968998424999999999984040
Q gi|254780829|r  321 PVRVHLKSLNKSDFRLILTDTESNLILQYKE--LMKTEGIILDFTEDSIDALADVAVNLNST  380 (437)
Q Consensus       321 p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~--lf~~~~v~L~ft~~Al~~IA~~A~~~~t~  380 (437)
                      ....|-..-+.....+.|....-+++++.++  +|..+.|+-..+.| ++..++.|..|.|.
T Consensus       595 t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssD-l~qAT~lA~~MVt~  655 (752)
T KOG0734         595 TSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSD-LDQATKLARRMVTK  655 (752)
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHH
T ss_conf             13468654045779999998777623057788860677555665302-78899999999997


No 12 
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00  E-value=1.5e-44  Score=308.21  Aligned_cols=364  Identities=15%  Similarity=0.090  Sum_probs=301.4

Q ss_pred             CCCCHHHHHHHHHH-------CEECHHHHHHHHHHHHHHHHHHHCCCCCCCC----CCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf             76888999998620-------3048689999999999877886408644446----656686699679888689999999
Q gi|254780829|r    5 FNFSPREIVSELDR-------YIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGVGKTAISRRL   73 (437)
Q Consensus         5 ~~ltP~~i~~~Ld~-------~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~----e~~psNiLLiGPtGtGKTlLAktL   73 (437)
                      |+..+...+.+...       -|.|.|+||.-++--|-      .+....+.    -.+|+++||+||||||||||||++
T Consensus       130 ~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVd------fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAv  203 (596)
T COG0465         130 FSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVD------FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAV  203 (596)
T ss_pred             CCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHH------HHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf             67775889874135667675664186799999999999------863855667523534565268559998727899998


Q ss_pred             HHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             99707877971434101212234310134678887652127899856549888868887555531143211004668988
Q gi|254780829|r   74 ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK  153 (437)
Q Consensus        74 A~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (437)
                      |++++||||+.++|+|.||+     |+++++|+++.|..+.+.|||++|+++++..++.|....++|+++.+++.++++.
T Consensus       204 AgEA~VPFf~iSGS~FVemf-----VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLv  278 (596)
T COG0465         204 AGEAGVPFFSISGSDFVEMF-----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV  278 (596)
T ss_pred             HCCCCCCCEECCCHHHHHHH-----CCCCCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             45468983530344464431-----4788388899999855159966987634331454577889980699999988885


Q ss_pred             HHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             98616888854998753554554433466766632100011010013543221000001023553327888630310111
Q gi|254780829|r  154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV  233 (437)
Q Consensus       154 ~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  233 (437)
                      +++.++..+..|.+..++++.-  .+....+++++++.+....+...++......+..............+++.++++++
T Consensus       279 EmDGF~~~~gviviaaTNRpdV--lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V~l~~iAr~tpGfsG  356 (596)
T COG0465         279 EMDGFGGNEGVIVIAATNRPDV--LDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSG  356 (596)
T ss_pred             HHCCCCCCCCEEEECCCCCCCC--CHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCC
T ss_conf             2015788875488526787433--31765288776625544785156578887886415777766788898643778563


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf             23678887532221002221001357665654332101223432046652211246664202466401675422112125
Q gi|254780829|r  234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL  313 (437)
Q Consensus       234 ~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~gli  313 (437)
                      +..++..||....++......+.+.++..+.++...|..+....+.+.++..++||+++|+.+.+...++.+.+|.++++
T Consensus       357 AdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiP  436 (596)
T COG0465         357 ADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIP  436 (596)
T ss_pred             CHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf             06765566889999883684675345388999996587768864674540325788999999997278876200355226


Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             5433451268861554246788876434688999999998751-96899842499999999998404001237
Q gi|254780829|r  314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE-GIILDFTEDSIDALADVAVNLNSTVGDIG  385 (437)
Q Consensus       314 pE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~-~v~L~ft~~Al~~IA~~A~~~~t~~~~~G  385 (437)
                      +.-++++..-.|.+.-....-..++.+....+..+..+..... .+.-.++++ +.....+|..|-|   .+|
T Consensus       437 rG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~D-~~~at~~ar~mVt---~~G  505 (596)
T COG0465         437 RGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASND-LEKATDLARAMVT---EYG  505 (596)
T ss_pred             CCHHHCCEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHH---HCC
T ss_conf             72220110038854532012778887999986671766646244501352131-8999999998533---518


No 13 
>KOG0731 consensus
Probab=100.00  E-value=1.6e-43  Score=301.57  Aligned_cols=346  Identities=14%  Similarity=0.084  Sum_probs=278.0

Q ss_pred             HCEECHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCC
Q ss_conf             03048689999999999877886408644--4466566866996798886899999999970787797143410121223
Q gi|254780829|r   18 RYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV   95 (437)
Q Consensus        18 ~~VvGQ~~AKk~lavav~nhy~R~~~~~~--~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyv   95 (437)
                      +-|.|+|+||.=|=--|  ||  .+.+..  ...-.+|+|+||+|||||||||||||+|+|++|||++++||+|+|++  
T Consensus       311 kDVAG~deAK~El~E~V--~f--LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~--  384 (774)
T KOG0731         311 KDVAGVDEAKEELMEFV--KF--LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF--  384 (774)
T ss_pred             CCCCCHHHHHHHHHHHH--HH--HCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHH--
T ss_conf             10267089999999999--98--4398999874776767517878999867899998853058964641337888876--


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf             431013467888765212789985654988886888755-5531143211004668988986168888549987535545
Q gi|254780829|r   96 GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI-LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS  174 (437)
Q Consensus        96 G~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~  174 (437)
                         |+...+|+++.+..+.++|||++++++++..+..|. .....++.+.+++.++++..++.+...+.+|.+..++++.
T Consensus       385 ---~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d  461 (774)
T KOG0731         385 ---VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD  461 (774)
T ss_pred             ---CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
T ss_conf             ---03434888999987432698079714542003125566667888078889998878752776778479981168866


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             54433466766632100011010013543221000001-02355332788863031011123678887532221002221
Q gi|254780829|r  175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV-QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD  253 (437)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~  253 (437)
                      .++..  ..+++++++++....+...++......+... ..+.........+.+++++++++.++.+++....+++...+
T Consensus       462 ~ld~a--llrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~  539 (774)
T KOG0731         462 ILDPA--LLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLR  539 (774)
T ss_pred             CCCHH--HCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf             42887--6498755552324698514168999998621577631567999986089996789986424999999873367


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf             00135766565433210122343204665221124666420246640167542211212554334512688615542467
Q gi|254780829|r  254 KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD  333 (437)
Q Consensus       254 ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l~~L~~~~  333 (437)
                      .+...+...+.++...|.+++...+.+.++..++||+++|+.+.|++.+..+++|.++++-. ...+-...|-+. ....
T Consensus       540 ~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiPGq-alG~a~~~P~~~-~l~s  617 (774)
T KOG0731         540 EIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIPGQ-ALGYAQYLPTDD-YLLS  617 (774)
T ss_pred             CCCHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEECCCC-CCCEEEECCCCC-CCCC
T ss_conf             30156499999998612234501107776534221212523220134566740168733677-465378777645-3233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH---HHHHHHHHHHHHC
Q ss_conf             888764346889999999987519689984249---9999999998404
Q gi|254780829|r  334 FRLILTDTESNLILQYKELMKTEGIILDFTEDS---IDALADVAVNLNS  379 (437)
Q Consensus       334 l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~A---l~~IA~~A~~~~t  379 (437)
                      ..+++..+..+|..+..+..-.-   .+.|.+|   ++.+.+.|..+.+
T Consensus       618 k~ql~~rm~m~LGGRaAEev~fg---~~iTtga~ddl~kvT~~A~~~V~  663 (774)
T KOG0731         618 KEQLFDRMVMALGGRAAEEVVFG---SEITTGAQDDLEKVTKIARAMVA  663 (774)
T ss_pred             HHHHHHHHHHHHCCCHHHHEECC---CCCCCHHCCCHHHHHHHHHHHHH
T ss_conf             89999889988576203320327---75671110408899999999998


No 14 
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461    Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=100.00  E-value=1e-32  Score=231.61  Aligned_cols=268  Identities=23%  Similarity=0.385  Sum_probs=189.8

Q ss_pred             HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             999998620304868999999999987788640864444665668-6699679888689999999997078779714341
Q gi|254780829|r   10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTK   88 (437)
Q Consensus        10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~   88 (437)
                      +.+...|-+-|-|||+|.+.|.-||    ||-+  ++++.+--|- ++|++||||||||+|||.||+.|||+|..=|+||
T Consensus       489 ~~L~~~L~~kIfGQD~AI~~lv~ai----K~Sr--AGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSE  562 (774)
T TIGR02639       489 KNLEKELKAKIFGQDEAIEQLVSAI----KRSR--AGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSE  562 (774)
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHH----HHHH--HHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHH
T ss_conf             2044763013151589999999999----9987--424778881688886479896257889999997082001046504


Q ss_pred             EEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             012-----------122343101346788876521278998565498888688875555311432110046689889861
Q gi|254780829|r   89 FTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD  157 (437)
Q Consensus        89 ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  157 (437)
                      |+|           +||||-|=+=.+.+-+       .+.|+-++    .-+..++         .+.+-.|+++|-|+-
T Consensus       563 YmEKHTVsRLIGsPPGYVGfEqGGLLT~Av-------rK~P~cVL----LLDEIEK---------AHpDI~NILLQVMD~  622 (774)
T TIGR02639       563 YMEKHTVSRLIGSPPGYVGFEQGGLLTDAV-------RKHPHCVL----LLDEIEK---------AHPDIYNILLQVMDY  622 (774)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCHHHH-------CCCCCEEE----HHHHHHH---------HHHHHHHHHHHHHCC
T ss_conf             468999987416888851316777212233-------12885354----2346666---------313366678766335


Q ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             68888549987535545544334667666321000110100135432210000010235533278886303101112367
Q gi|254780829|r  158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS  237 (437)
Q Consensus       158 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a  237 (437)
                      ..+||++..                   -.+++|+.-++.+.-|....-                               
T Consensus       623 AtLTDN~Gr-------------------KaDFRNVILIMTSNaGa~E~~-------------------------------  652 (774)
T TIGR02639       623 ATLTDNNGR-------------------KADFRNVILIMTSNAGAREMS-------------------------------  652 (774)
T ss_pred             CEEECCCCC-------------------EEEECCEEEEECCCCCCCCCC-------------------------------
T ss_conf             434058885-------------------763113688840370010236-------------------------------


Q ss_pred             HHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             88875322210022210013576656543321012234320466522112466642024664016754221121255433
Q gi|254780829|r  238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ  317 (437)
Q Consensus       238 ~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~  317 (437)
                           .+.++|                  .......+...-                             ..--|-|||.
T Consensus       653 -----~~~iGF------------------~~~~~~~~~~~A-----------------------------ikk~F~PEFR  680 (774)
T TIGR02639       653 -----KNPIGF------------------GGERVEDKSEKA-----------------------------IKKLFSPEFR  680 (774)
T ss_pred             -----CCCCCC------------------CCCCCHHHHHHH-----------------------------HHHHCCCCCC
T ss_conf             -----776442------------------555412334888-----------------------------9731587420


Q ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--
Q ss_conf             451268861554246788876434688999999998751968998424999999999984040012372467999999--
Q gi|254780829|r  318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER--  395 (437)
Q Consensus       318 GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~--  395 (437)
                      +||..+++|++|+.+.+.+|...    .+.+-+..+..-+|+|++|++|+..+|++++.     +++|||.|..+++.  
T Consensus       681 NRLDaii~F~~L~~~~~~~i~~K----~l~el~~~L~eK~v~l~l~~~a~~~LA~KGY~-----~efGARpl~R~I~~~i  751 (774)
T TIGR02639       681 NRLDAIIAFNDLSEEVAEKIVKK----FLDELQKQLNEKNVELELTDDAIKYLAEKGYD-----EEFGARPLARVIQEEI  751 (774)
T ss_pred             CCCCCEEECCCCCHHHHHHHHHH----HHHHHHHHHHHCCEEEEECHHHHHHHHHHCCC-----CCCCCCHHHHHHHHHH
T ss_conf             13346441699889999999999----99999975530653787647899999863678-----1105544899988741


Q ss_pred             ---HHHHHHCCCCCCCCCEEEEC
Q ss_conf             ---86776212756877689985
Q gi|254780829|r  396 ---VLEDISFSASDLQEKTVVID  415 (437)
Q Consensus       396 ---~l~d~~fe~p~~~~~~v~Id  415 (437)
                         +..|+.|-- =.+|..|.|+
T Consensus       752 ~~~L~dEILFG~-LKkGG~v~~~  773 (774)
T TIGR02639       752 KKPLSDEILFGK-LKKGGEVKIS  773 (774)
T ss_pred             HHHHHHHHCCCC-CCCCCEEEEE
T ss_conf             257654420570-0167268873


No 15 
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.98  E-value=1.3e-31  Score=224.46  Aligned_cols=284  Identities=23%  Similarity=0.308  Sum_probs=177.4

Q ss_pred             HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEE
Q ss_conf             999998620304868999999999987788640864444665668-66996798886899999999970---78779714
Q gi|254780829|r   10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLA---GAPFIKVE   85 (437)
Q Consensus        10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l---~VPF~~~d   85 (437)
                      ..+.+.|.+.||||++|.+++|-||+    |-+  .+++++--|- .+||+||||||||+|||+||.++   .-.++..|
T Consensus       501 ~~le~~L~~~ViGQd~AI~~vs~ai~----rsr--aGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~D  574 (823)
T CHL00095        501 IHMEETLHKRIIGQDEAVVAVSKAIR----RAR--VGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLD  574 (823)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             87888787784076999999999999----997--089989997468998789988779999999999747820258853


Q ss_pred             CCCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             341012-----------122343101346788876521278998565498888688875555311432110046689889
Q gi|254780829|r   86 VTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK  154 (437)
Q Consensus        86 aT~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (437)
                      +|+|.|           .||||.+-+-.+..       .+++.|..++    ..+..++         .+.+..+.++|.
T Consensus       575 MSEy~E~hsvsrLIGaPPGYVGy~eGG~LTe-------aVrr~PysVv----LfDEIEK---------AHpdV~nilLQv  634 (823)
T CHL00095        575 MSEYMEKHTVSKLIGSPPGYVGYNEGGQLTE-------AVRKKPYTVV----LFDEIEK---------AHPDIFNLLLQI  634 (823)
T ss_pred             CCCCCCCCCHHHHCCCCCCCCCCCCCCCHHH-------HHHCCCCEEE----EECHHHH---------CCHHHHHHHHHH
T ss_conf             5101554207674589987667787882019-------8871998699----8621311---------388999988765


Q ss_pred             HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             86168888549987535545544334667666321000110100135432210000010235533278886303101112
Q gi|254780829|r  155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH  234 (437)
Q Consensus       155 l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  234 (437)
                      ++.|..+|.....                   .++.|..-.+.+..|                   ...+.+.       
T Consensus       635 lDdG~LtD~~Gr~-------------------vdF~NtIIImTSNlG-------------------s~~i~~~-------  669 (823)
T CHL00095        635 LDDGRLTDSKGRT-------------------IDFKNTLIIMTSNLG-------------------SKVIEKG-------  669 (823)
T ss_pred             CCCCCCCCCCCCE-------------------EECEEEEEEECCCCC-------------------HHHHHHC-------
T ss_conf             1688434899998-------------------843103999716505-------------------5888741-------


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf             36788875322210022210013576656543321012234320466522112466642024664016754221121255
Q gi|254780829|r  235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP  314 (437)
Q Consensus       235 ~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glip  314 (437)
                              ..+..|....+      .........+.+....                    ..-+         ..-|.|
T Consensus       670 --------~~~~gf~~~~~------~~~~~~~~~~~~~~~v--------------------~~~l---------~~~F~P  706 (823)
T CHL00095        670 --------GGSLGFKLLED------GTKLDEKQYKRLSNLV--------------------NEEL---------KQYFRP  706 (823)
T ss_pred             --------CCCCCCCCCCC------CCCCCHHHHHHHHHHH--------------------HHHH---------HHHCCH
T ss_conf             --------34434333445------4322023589999999--------------------9999---------843798


Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             43345126886155424678887643468899999999875196899842499999999998404001237246799999
Q gi|254780829|r  315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME  394 (437)
Q Consensus       315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E  394 (437)
                      ||++|+.-+++|+||+.+++.+|..-    .+...++.++..+++|.+|+.|.+.+++.++.     ..+|||.|+.+++
T Consensus       707 EFlnRiDeii~F~~L~~~~l~~Iv~~----~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~-----~~~GARpl~R~I~  777 (823)
T CHL00095        707 EFLNRLDEIIVFRPLTKDEVWEIAEI----MLKELFKRLNNQGIQLEVDERFKTLLAKEGYN-----PLYGARPLRRAIM  777 (823)
T ss_pred             HHHHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCC-----CCCCCHHHHHHHH
T ss_conf             78732782786189999999999999----99999999996898599888999999995879-----7768136889999


Q ss_pred             HHHHHHHCCC----CCCCCCEEEECH
Q ss_conf             9867762127----568776899859
Q gi|254780829|r  395 RVLEDISFSA----SDLQEKTVVIDA  416 (437)
Q Consensus       395 ~~l~d~~fe~----p~~~~~~v~Id~  416 (437)
                      +.+.++.-+.    .-..+.++.||-
T Consensus       778 ~~i~~~ls~~il~g~~~~g~~v~v~~  803 (823)
T CHL00095        778 RLLEDPLAEEVLSFKIKPGDSLVVDV  803 (823)
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             99889999999748889969899997


No 16 
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.98  E-value=4.4e-31  Score=220.94  Aligned_cols=268  Identities=22%  Similarity=0.385  Sum_probs=177.6

Q ss_pred             HHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEC
Q ss_conf             99998620304868999999999987788640864444665668-66996798886899999999970---787797143
Q gi|254780829|r   11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLA---GAPFIKVEV   86 (437)
Q Consensus        11 ~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l---~VPF~~~da   86 (437)
                      .+.+.|.+.||||++|.+++|-|++    |-+  .+++++--|- .+||+||||||||+|||+||.++   .-.++..|+
T Consensus       561 ~le~~L~~rViGQd~AI~~v~~aI~----~sr--aGL~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDM  634 (857)
T PRK10865        561 RMEQELHHRVIGQNEAVEAVSNAIR----RSR--AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDM  634 (857)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHH----HHH--CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECC
T ss_conf             9999998785280999999999999----986--3899999973899986898788899999999998389334256253


Q ss_pred             CCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             41012-----------1223431013467888765212789985654988886888755553114321100466898898
Q gi|254780829|r   87 TKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL  155 (437)
Q Consensus        87 T~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  155 (437)
                      |+|+|           .||||.+-+-.+..       .+++.|..++    ..+..++         .+.+..+.++|.+
T Consensus       635 SEy~E~hsVSrLiGaPPGYVGy~eGG~LTe-------aVRr~PySVv----LfDEIEK---------AHpdV~nilLQvl  694 (857)
T PRK10865        635 SEFMEKHSVSRLVGAPPGYVGYEEGGYLTE-------AVRRRPYSVI----LLDEVEK---------AHPDVFNILLQVL  694 (857)
T ss_pred             HHHCCCHHHHHHCCCCCCCCCCCCCCCHHH-------HHHHCCCEEE----EEHHHHH---------HCHHHHHHHHHHH
T ss_conf             321130127675589987667577881109-------9981987788----6325766---------3858999999870


Q ss_pred             HHCCCCCCEEE-EEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             61688885499-87535545544334667666321000110100135432210000010235533278886303101112
Q gi|254780829|r  156 RDGEISDKEID-IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH  234 (437)
Q Consensus       156 ~~~~~~~~~i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  234 (437)
                      +.|..+|.... ++-.       +....+..+.|                                .+.+.+        
T Consensus       695 D~G~LtD~~Gr~vdF~-------NtIIImTSN~G--------------------------------s~~i~~--------  727 (857)
T PRK10865        695 DDGRLTDGQGRTVDFR-------NTVVIMTSNLG--------------------------------SDLIQE--------  727 (857)
T ss_pred             CCCEEECCCCCEEEEE-------EEEEEECCCHH--------------------------------HHHHHH--------
T ss_conf             3683207999888513-------34899646233--------------------------------699986--------


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf             36788875322210022210013576656543321012234320466522112466642024664016754221121255
Q gi|254780829|r  235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP  314 (437)
Q Consensus       235 ~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glip  314 (437)
                              ..+               ...    ..........                    -+         .--|.|
T Consensus       728 --------~~~---------------~~~----~~~~~~~~~~--------------------~l---------~~~F~P  751 (857)
T PRK10865        728 --------RFG---------------ELD----YAHMKELVLG--------------------VV---------SHNFRP  751 (857)
T ss_pred             --------HCC---------------CCC----HHHHHHHHHH--------------------HH---------HHHCCH
T ss_conf             --------506---------------556----6889999999--------------------99---------864798


Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             43345126886155424678887643468899999999875196899842499999999998404001237246799999
Q gi|254780829|r  315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME  394 (437)
Q Consensus       315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E  394 (437)
                      ||++|+..+++|+||+.+++.+|..-    .+...+..++..+++|.++++|.+.|++.++..     .+|||.|+.+++
T Consensus       752 EFlnRiD~iv~F~pL~~~~l~~Iv~~----~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~-----~~GARpl~r~I~  822 (857)
T PRK10865        752 EFINRIDEVVVFHPLGEQHIASIAQI----QLQRLYKRLEERGYEIHISDEALKLLSENGYDP-----VYGARPLKRAIQ  822 (857)
T ss_pred             HHHHCCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCC-----CCCHHHHHHHHH
T ss_conf             88823784898278999999999999----999999999977984998889999999848897-----747137899999


Q ss_pred             HHHHHHHCC----CCCCCCCEEEECH
Q ss_conf             986776212----7568776899859
Q gi|254780829|r  395 RVLEDISFS----ASDLQEKTVVIDA  416 (437)
Q Consensus       395 ~~l~d~~fe----~p~~~~~~v~Id~  416 (437)
                      +.++++.-+    -.-..+.++.||-
T Consensus       823 ~~i~~~ls~~il~g~~~~g~~i~v~~  848 (857)
T PRK10865        823 QQIENPLAQQILSGELVPGKVIRLEV  848 (857)
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             99889999999728889969899997


No 17 
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.98  E-value=1.2e-31  Score=224.71  Aligned_cols=272  Identities=24%  Similarity=0.325  Sum_probs=174.6

Q ss_pred             HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHH---CCCEEEEE
Q ss_conf             9999986203048689999999999877886408644446656686-6996798886899999999970---78779714
Q gi|254780829|r   10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLA---GAPFIKVE   85 (437)
Q Consensus        10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l---~VPF~~~d   85 (437)
                      ..+.+.|.+.||||++|.+++|-||+    |-+  .+++++--|-+ +||+||||||||+|||+||.++   .-.++..|
T Consensus       558 ~~le~~L~~~ViGQ~~Av~~v~~ai~----~sr--aGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~D  631 (852)
T TIGR03345       558 LSLPDRLAERVIGQDHALEAIAERIR----TAR--AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITIN  631 (852)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             86799999997284999999999999----987--179999998568998789987789999999999719861147842


Q ss_pred             CCCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             341012-----------122343101346788876521278998565498888688875555311432110046689889
Q gi|254780829|r   86 VTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK  154 (437)
Q Consensus        86 aT~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (437)
                      +|+|+|           .||||.+-+-.+..       .+++.|..++    ..+..++         .+.+..+.++|.
T Consensus       632 MSEy~E~hsvsrLiGaPPGYVGy~eGG~LTe-------~Vrr~PysVv----LfDEIEK---------AHpdV~nilLQv  691 (852)
T TIGR03345       632 MSEFQEAHTVSRLKGSPPGYVGYGEGGVLTE-------AVRRKPYSVV----LLDEVEK---------AHPDVLELFYQV  691 (852)
T ss_pred             CHHHCCHHHHHHHCCCCCCCCCCCCCCHHHH-------HHHHCCCEEE----EECHHHH---------CCHHHHHHHHHH
T ss_conf             2432104368786389997667487772109-------8880998688----8611300---------288999999987


Q ss_pred             HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             86168888549987535545544334667666321000110100135432210000010235533278886303101112
Q gi|254780829|r  155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH  234 (437)
Q Consensus       155 l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  234 (437)
                      ++.+..+|.....                   .++.|-.-++.+                   ++..+......      
T Consensus       692 lD~G~LtD~~Gr~-------------------vdF~NtIIImTS-------------------N~Gs~~i~~~~------  727 (852)
T TIGR03345       692 FDKGVMEDGEGRE-------------------IDFKNTVILLTS-------------------NAGSDLIMALC------  727 (852)
T ss_pred             HCCCEEECCCCCE-------------------EECEEEEEEECC-------------------CHHHHHHHHHH------
T ss_conf             2467775799998-------------------845212999757-------------------24479998640------


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf             36788875322210022210013576656543321012234320466522112466642024664016754221121255
Q gi|254780829|r  235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP  314 (437)
Q Consensus       235 ~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glip  314 (437)
                                               .........+........                            .++. -|.|
T Consensus       728 -------------------------~~~~~~~~~~~~~~~v~~----------------------------~l~~-~F~P  753 (852)
T TIGR03345       728 -------------------------ADPETAPDPEALLEALRP----------------------------ELLK-VFKP  753 (852)
T ss_pred             -------------------------CCCCCCCCHHHHHHHHHH----------------------------HHHH-HCCH
T ss_conf             -------------------------376555668999999999----------------------------9983-4798


Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             43345126886155424678887643468899999999875-19689984249999999999840400123724679999
Q gi|254780829|r  315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT-EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM  393 (437)
Q Consensus       315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~-~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~  393 (437)
                      ||++|+ -+++++||+.+++.+|..-    .+......++. .+++|.+|+.|++.|++..+.     ..+|||.|+.++
T Consensus       754 EFlnRi-~ii~F~~L~~~~l~~Iv~~----~l~~l~~rL~~~~~i~l~~~~~~~~~l~~~g~~-----~~~GARpl~r~I  823 (852)
T TIGR03345       754 AFLGRM-TVIPYLPLDDDVLAAIVRL----KLDRIARRLKENHGAELVYSEALVEHIVARCTE-----VESGARNIDAIL  823 (852)
T ss_pred             HHHCCE-EEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCC-----CCCCCCHHHHHH
T ss_conf             886456-6897368999999999999----999999999862896899889999999982899-----776864389999


Q ss_pred             HHHHHHHHCC------CCCCCCCEEEEC
Q ss_conf             9986776212------756877689985
Q gi|254780829|r  394 ERVLEDISFS------ASDLQEKTVVID  415 (437)
Q Consensus       394 E~~l~d~~fe------~p~~~~~~v~Id  415 (437)
                      ++.+.++.-+      .++..+++|.+|
T Consensus       824 ~~~i~~~la~~iL~~~~~g~~~~~i~~~  851 (852)
T TIGR03345       824 NQTLLPELSRQILERLAAGEPIERIHLD  851 (852)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             9998899999999987089972488815


No 18 
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.97  E-value=3.6e-31  Score=221.54  Aligned_cols=275  Identities=24%  Similarity=0.355  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHC---CCEEEE
Q ss_conf             8999998620304868999999999987788640864444665668-669967988868999999999707---877971
Q gi|254780829|r    9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAG---APFIKV   84 (437)
Q Consensus         9 P~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l~---VPF~~~   84 (437)
                      -..+-+.|.+.|||||+|.+++|-||    ||-+.  ++.++--|- .+||+||||||||+|||+||.++-   -+++..
T Consensus       482 ll~le~~L~~rViGQd~AV~~v~~aI----rraRa--GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~  555 (786)
T COG0542         482 LLNLERRLKKRVIGQDEAVEAVSDAI----RRARA--GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI  555 (786)
T ss_pred             HHHHHHHHHCCEECHHHHHHHHHHHH----HHHHC--CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             98679997365017399999999999----99856--9999998735788667886569999999999965997444554


Q ss_pred             ECCCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             4341012-----------12234310134678887652127899856549888868887555531143211004668988
Q gi|254780829|r   85 EVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK  153 (437)
Q Consensus        85 daT~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (437)
                      |+|+|.|           .||||.+.+-.+...       +++.|..+    +..+..++         .+.+..+.++|
T Consensus       556 DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEa-------VRr~PySV----iLlDEIEK---------AHpdV~nilLQ  615 (786)
T COG0542         556 DMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEA-------VRRKPYSV----ILLDEIEK---------AHPDVFNLLLQ  615 (786)
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHH-------HHCCCCEE----EEECHHHH---------CCHHHHHHHHH
T ss_conf             568777787799872799987200655400376-------60699868----88412644---------08899999999


Q ss_pred             HHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf             98616888854998753554554433466766632100011010013543221000001023553327888630310111
Q gi|254780829|r  154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV  233 (437)
Q Consensus       154 ~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  233 (437)
                      .+++|.++|.+...                   .++.+..-++.+..|                   .....+..     
T Consensus       616 VlDdGrLTD~~Gr~-------------------VdFrNtiIImTSN~G-------------------s~~i~~~~-----  652 (786)
T COG0542         616 VLDDGRLTDGQGRT-------------------VDFRNTIIIMTSNAG-------------------SEEILRDA-----  652 (786)
T ss_pred             HHCCCCEECCCCCE-------------------EECCEEEEEEECCCC-------------------HHHHHHHC-----
T ss_conf             84678055489988-------------------843002899845026-------------------59897531-----


Q ss_pred             HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf             23678887532221002221001357665654332101223432046652211246664202466401675422112125
Q gi|254780829|r  234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL  313 (437)
Q Consensus       234 ~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~gli  313 (437)
                                 +              .  ......+......                    ...+         .-.|.
T Consensus       653 -----------~--------------~--~~~~~~~~~~~~v--------------------~~~l---------~~~F~  676 (786)
T COG0542         653 -----------D--------------G--DDFADKEALKEAV--------------------MEEL---------KKHFR  676 (786)
T ss_pred             -----------C--------------C--CCCCHHHHHHHHH--------------------HHHH---------HHHCC
T ss_conf             -----------3--------------4--3210046788999--------------------9999---------85389


Q ss_pred             CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf             54334512688615542467888764346889999999987519689984249999999999840400123724679999
Q gi|254780829|r  314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM  393 (437)
Q Consensus       314 pE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~  393 (437)
                      |||++|+.-++++++|+++++.+|...    ++.+....+...++.|++|++|...|++..+.     ..+|||+|+.++
T Consensus       677 PEFLNRid~II~F~~L~~~~l~~Iv~~----~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd-----~~~GARpL~R~I  747 (786)
T COG0542         677 PEFLNRIDEIIPFNPLSKEVLERIVDL----QLNRLAKRLAERGITLELSDEAKDFLAEKGYD-----PEYGARPLRRAI  747 (786)
T ss_pred             HHHHHHCCCEEECCCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCC-----CCCCCHHHHHHH
T ss_conf             989851261785067998999999999----99999999986895599888999999996468-----776736799999


Q ss_pred             HHHHHHHHCC----CCCCCCCEEEECHH
Q ss_conf             9986776212----75687768998599
Q gi|254780829|r  394 ERVLEDISFS----ASDLQEKTVVIDAE  417 (437)
Q Consensus       394 E~~l~d~~fe----~p~~~~~~v~Id~~  417 (437)
                      ++-++++.-+    ..-.++.++.|+.+
T Consensus       748 q~~i~~~La~~iL~~~~~~~~~v~v~~~  775 (786)
T COG0542         748 QQEIEDPLADEILFGKIEDGGTVKVDVD  775 (786)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf             9999899999998466579967999951


No 19 
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.97  E-value=1.4e-30  Score=217.67  Aligned_cols=268  Identities=24%  Similarity=0.395  Sum_probs=178.2

Q ss_pred             HHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEC
Q ss_conf             99998620304868999999999987788640864444665668-66996798886899999999970---787797143
Q gi|254780829|r   11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLA---GAPFIKVEV   86 (437)
Q Consensus        11 ~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l---~VPF~~~da   86 (437)
                      .+.+.|.+.||||++|.+++|-||+    |-+  .+++++--|- .+||+||||||||+|||+||+++   .-.++..|+
T Consensus       558 ~Le~~L~~rViGQd~AI~~I~~aI~----~sr--aGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDM  631 (852)
T TIGR03346       558 HMEEVLHERVVGQDEAVEAVSDAIR----RSR--AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDM  631 (852)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf             7888899897170999999999999----997--1888899974589986788776899999999998558520698430


Q ss_pred             CCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf             41012-----------1223431013467888765212789985654988886888755553114321100466898898
Q gi|254780829|r   87 TKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL  155 (437)
Q Consensus        87 T~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  155 (437)
                      |+|+|           .||||.+-+-.+..-       +++.|..++    ..+..++         .+.+..+.++|.+
T Consensus       632 SEy~E~hsvsrLiGaPPGYVGy~egG~Lte~-------vr~~PysVv----L~DEIEK---------Ah~~V~~~lLQil  691 (852)
T TIGR03346       632 SEYMEKHSVARLIGAPPGYVGYEEGGQLTEA-------VRRKPYSVV----LFDEVEK---------AHPDVFNVLLQVL  691 (852)
T ss_pred             HHHCCHHHHHHHCCCCCCCCCCCCCCEECHH-------HHHCCCEEE----EECCHHH---------HCHHHHHHHHHHH
T ss_conf             4430122477855899976776878742398-------981988799----8530543---------0768999999882


Q ss_pred             HHCCCCCCEEE-EEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             61688885499-87535545544334667666321000110100135432210000010235533278886303101112
Q gi|254780829|r  156 RDGEISDKEID-IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH  234 (437)
Q Consensus       156 ~~~~~~~~~i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  234 (437)
                      +.|..+|.... ++                    +.|-.-.+..                   ++....+....      
T Consensus       692 D~G~ltD~~Gr~vd--------------------F~NtiiimTS-------------------N~Ga~~i~~~~------  726 (852)
T TIGR03346       692 DDGRLTDGQGRTVD--------------------FRNTVIIMTS-------------------NLGSQFIQELA------  726 (852)
T ss_pred             CCCEEECCCCCEEE--------------------EEEEEEEEEC-------------------CCCHHHHHHHC------
T ss_conf             36743079998885--------------------3556898615-------------------40659997411------


Q ss_pred             HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf             36788875322210022210013576656543321012234320466522112466642024664016754221121255
Q gi|254780829|r  235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP  314 (437)
Q Consensus       235 ~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glip  314 (437)
                                                   .....+.........                    +         .--|.|
T Consensus       727 -----------------------------~~~~~~~~~~~~~~~--------------------~---------~~~F~P  748 (852)
T TIGR03346       727 -----------------------------GGDDYEEMREAVMEV--------------------L---------RAHFRP  748 (852)
T ss_pred             -----------------------------CCCCHHHHHHHHHHH--------------------H---------HHHCCH
T ss_conf             -----------------------------455579999999999--------------------9---------965899


Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             43345126886155424678887643468899999999875196899842499999999998404001237246799999
Q gi|254780829|r  315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME  394 (437)
Q Consensus       315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E  394 (437)
                      ||++|+..+++|+||+.+++.+|...    .+....+.++..++++.+++.+.+.|++.++..     ++|||.|+.+++
T Consensus       749 EflnRid~ii~F~~L~~~~l~~I~~~----~l~~l~~~l~~~~i~l~~~~~~~~~l~~~g~~~-----~~GAR~l~r~i~  819 (852)
T TIGR03346       749 EFLNRIDEIVVFHPLGREQIARIVEI----QLGRLRKRLAERKITLELSDAALDFLAEAGYDP-----VYGARPLKRAIQ  819 (852)
T ss_pred             HHHHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCC-----CCCHHHHHHHHH
T ss_conf             89963786898378999999999999----999999999977984998889999999848897-----747156999999


Q ss_pred             HHHHHHHCCC----CCCCCCEEEECH
Q ss_conf             9867762127----568776899859
Q gi|254780829|r  395 RVLEDISFSA----SDLQEKTVVIDA  416 (437)
Q Consensus       395 ~~l~d~~fe~----p~~~~~~v~Id~  416 (437)
                      +.+.++.-+.    .-..+.+|.||-
T Consensus       820 ~~i~~~la~~iL~g~~~~g~~v~v~~  845 (852)
T TIGR03346       820 REIENPLAKKILAGEVADGDTIVVDV  845 (852)
T ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf             99889999999748889959899997


No 20 
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97  E-value=7.3e-31  Score=219.54  Aligned_cols=270  Identities=21%  Similarity=0.374  Sum_probs=179.2

Q ss_pred             HHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             899999862030486899999999998778864086444466566-8669967988868999999999707877971434
Q gi|254780829|r    9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT   87 (437)
Q Consensus         9 P~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~p-sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT   87 (437)
                      -..+.+.|.+.||||++|..++|-|++    |-+  .+++++--| ..+||+||||||||+|||+||+.++.+++..|+|
T Consensus       449 l~~le~~l~~~viGQ~~Ai~~v~~ai~----~~r--aGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMS  522 (758)
T PRK11034        449 LKNLGDRLKMLVFGQDKAIEALTEAIK----MSR--AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMS  522 (758)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf             998999987787454999999999999----986--38889999705899978998777999999999986677214266


Q ss_pred             CEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             1012-----------12234310134678887652127899856549888868887555531143211004668988986
Q gi|254780829|r   88 KFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR  156 (437)
Q Consensus        88 ~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  156 (437)
                      +|.|           .||||-+-+-.+..       .+++.|..++    ..+..++         .+.+..+.++|.++
T Consensus       523 Ey~e~hsvsrLiGaPPGYVGy~eGG~Lte-------~Vr~~PysVv----L~DEIEK---------AhpdV~nilLQvlD  582 (758)
T PRK11034        523 EYMERHTVSRLIGAPPGYVGFDQGGLLTD-------AVIKHPHAVL----LLDEIEK---------AHPDVFNLLLQVMD  582 (758)
T ss_pred             HHCCHHHHHHHCCCCCCCCCCCCCCCCCH-------HHHHCCCEEE----EEHHHHH---------HCHHHHHHHHHHCC
T ss_conf             53120147774489986667677770128-------7873987799----7336756---------39899998873237


Q ss_pred             HCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf             16888854998753554554433466766632100011010013543221000001023553327888630310111236
Q gi|254780829|r  157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD  236 (437)
Q Consensus       157 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  236 (437)
                      .+.++|.+...                   .++.|..-.+.+..|             +      ...            
T Consensus       583 ~G~LtD~~Gr~-------------------vdF~NtiIImTSN~G-------------a------~~~------------  612 (758)
T PRK11034        583 NGTLTDNNGRK-------------------ADFRNVVLVMTTNAG-------------V------RET------------  612 (758)
T ss_pred             CCCCCCCCCCE-------------------EECEEEEEEEECCCC-------------H------HHH------------
T ss_conf             78301799998-------------------844001999825617-------------4------878------------


Q ss_pred             HHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             78887532221002221001357665654332101223432046652211246664202466401675422112125543
Q gi|254780829|r  237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI  316 (437)
Q Consensus       237 a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~  316 (437)
                           ....++|..                  .....+..                    .-+        + --|.|||
T Consensus       613 -----~~~~~gf~~------------------~~~~~~~~--------------------~~l--------~-~~F~PEF  640 (758)
T PRK11034        613 -----ERKSIGLIH------------------QDNSTDAM--------------------EEI--------K-KIFTPEF  640 (758)
T ss_pred             -----HHHCCCCCC------------------CCCHHHHH--------------------HHH--------H-HHCCHHH
T ss_conf             -----642147554------------------20359999--------------------999--------9-5479867


Q ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             34512688615542467888764346889999999987519689984249999999999840400123724679999998
Q gi|254780829|r  317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV  396 (437)
Q Consensus       317 ~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~  396 (437)
                      .+|+..+++++||+.+++.+|...    .+.+.++.++..+++|.+|+.|.+.+++..+..     .+|||+|+.++++.
T Consensus       641 lNRiD~ii~F~~L~~~~l~~Iv~~----~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~-----~~GARpl~R~I~~~  711 (758)
T PRK11034        641 RNRLDNIIWFDHLSTDVIHQVVDK----FIVELQAQLDQKGVSLEVSQEARDWLAEKGYDR-----AMGARPMARVIQDN  711 (758)
T ss_pred             HHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCC-----CCCCCHHHHHHHHH
T ss_conf             723674786388999999999999----999999999978985998899999999848894-----53711288999999


Q ss_pred             HHHHHCCC----CCCCCCEEEEC
Q ss_conf             67762127----56877689985
Q gi|254780829|r  397 LEDISFSA----SDLQEKTVVID  415 (437)
Q Consensus       397 l~d~~fe~----p~~~~~~v~Id  415 (437)
                      +.++.-+.    .-.++.+|.||
T Consensus       712 i~~~La~~il~g~~~~g~~v~v~  734 (758)
T PRK11034        712 LKKPLANELLFGSLVDGGQVTVA  734 (758)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             88999999972988898989999


No 21 
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.93  E-value=3.2e-26  Score=189.40  Aligned_cols=246  Identities=15%  Similarity=0.083  Sum_probs=175.1

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970787797143410121223431
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN   98 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~D   98 (437)
                      -|-|.|++|+.+--||---.++-.+-.... --.|+||||.||||||||+|||++|+++++||+.++++++... |+|+.
T Consensus       133 dIGGl~~~k~el~E~velPl~~pe~f~~~G-i~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk-~vGes  210 (390)
T PRK03992        133 DIGGLDEQIREVREAVELPLKNPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK-FIGEG  210 (390)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHC-CCCHH
T ss_conf             614989999999999999865989999769-9999727868989997899999999874888799667997524-54179


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf             01346788876521278998565498888688875555311432110046689889861688885499875355455443
Q gi|254780829|r   99 VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN  178 (437)
Q Consensus        99 Ves~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~  178 (437)
                          ...+.+.|..+.+.+||.+|+++++..+.+|......+.........+++.+++........+.+..++++..+++
T Consensus       211 ----ek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrpd~LDp  286 (390)
T PRK03992        211 ----ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRPDILDP  286 (390)
T ss_pred             ----HHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHCCH
T ss_conf             ----9999999999997099089714325663356778886208899999999997448777788279960698100597


Q ss_pred             CCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCC
Q ss_conf             34667666321000110100135432210000010235533278886303101112367888753222100222100135
Q gi|254780829|r  179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR  258 (437)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~  258 (437)
                      ..  .++++++..+....|....+......+.........++.....+.+.+.++++....+.++.-.+.+...+.|...
T Consensus       287 Al--lRpGRFDr~I~iplPd~~~R~~Ilki~~~~~~l~~dvdl~~lA~~T~G~SGADI~~lc~EA~m~Air~~r~~i~~~  364 (390)
T PRK03992        287 AL--LRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTME  364 (390)
T ss_pred             HH--HCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             77--5477652388708949999999999984799999888999999768799899999999999999998589860899


Q ss_pred             CCCCCCCCCCCCHH
Q ss_conf             76656543321012
Q gi|254780829|r  259 DSGNGIGVSREGVQ  272 (437)
Q Consensus       259 ~~~~~~~~~~~g~~  272 (437)
                      ++..+.........
T Consensus       365 Df~~Ai~kv~~~~~  378 (390)
T PRK03992        365 DFLKAIEKVMGKEE  378 (390)
T ss_pred             HHHHHHHHHHCCCC
T ss_conf             99999999967865


No 22 
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92  E-value=3.2e-26  Score=189.44  Aligned_cols=211  Identities=15%  Similarity=0.085  Sum_probs=172.0

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE  131 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~  131 (437)
                      .||||||+|||||||||||||+|...++-|+.+.||+|.|. |+|+    +.+-+++.|..+.++|+++||++++++.+.
T Consensus       184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK-YiGE----GaRlVRelF~lArekaPsIIFiDEIDAIg~  258 (406)
T COG1222         184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK-YIGE----GARLVRELFELAREKAPSIIFIDEIDAIGA  258 (406)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHH-HHCC----CHHHHHHHHHHHHHCCCEEEEEECHHHHHC
T ss_conf             99712766899975889999987205866999421999999-8341----169999999987414984999831122311


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf             75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r  132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS  211 (437)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      +|.....+|..+-..+.-+++.+|++++.-++.-.|..+++.+.++++  ..++++.++.+-...+...++.....++-.
T Consensus       259 kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPA--LLRPGR~DRkIEfplPd~~gR~~Il~IHtr  336 (406)
T COG1222         259 KRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPA--LLRPGRFDRKIEFPLPDEEGRAEILKIHTR  336 (406)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH--HCCCCCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf             113688885099999999999860588978876899855885555766--508875453011689897899999998762


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCC
Q ss_conf             1023553327888630310111236788875322210022210013576656543321
Q gi|254780829|r  212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE  269 (437)
Q Consensus       212 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~  269 (437)
                      ........+.+.+.+.+++.++++....+.|+--.|.++..+.+.+.++..+.+....
T Consensus       337 kM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~  394 (406)
T COG1222         337 KMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK  394 (406)
T ss_pred             HCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHH
T ss_conf             1467667699999875389956779999998759999860473339999999999972


No 23 
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937    Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12).     Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , .   More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=99.92  E-value=1.3e-25  Score=185.55  Aligned_cols=207  Identities=16%  Similarity=0.108  Sum_probs=174.6

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE  131 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~  131 (437)
                      .||||||.|||||||||||||+|.+.++-|+.+=||+|..- |+|    -+++-+.+.|.-+.++||.++|++++++.+.
T Consensus       155 PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvVgSElV~K-yIG----EGArLV~~~F~LAkEKaPsIiFIDEiDAiaa  229 (364)
T TIGR01242       155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK-YIG----EGARLVREVFELAKEKAPSIIFIDEIDAIAA  229 (364)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHH-HHC----CHHHHHHHHHHHHHCCCCCEEEEECHHHHHH
T ss_conf             89865700757976889999863145512688604444444-413----3168999999985306981686101333543


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf             75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r  132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS  211 (437)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      +|....-+|..+-..+.-+++++|++++.-++.-.|..+|+.+.+++.  ..+++++++-+-...|...|+.....+|-.
T Consensus       230 kR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~DilDPA--~LRPGRFDR~IEVPlP~~~GR~eIlkiHTr  307 (364)
T TIGR01242       230 KRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPA--ILRPGRFDRIIEVPLPDFEGRLEILKIHTR  307 (364)
T ss_pred             HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCC--CCCCCCCCCEEECCCCCCCCHHHHHHHHHC
T ss_conf             211467787315788999999752488876761688720762020432--148886132573169783220566555210


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCC
Q ss_conf             102355332788863031011123678887532221002221001357665654
Q gi|254780829|r  212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG  265 (437)
Q Consensus       212 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~  265 (437)
                      ........+...+++++.+.++++.-..+.|+--.|.+...+.+++.++..+.+
T Consensus       308 ~~~la~dVdl~~~A~~TeG~sGAdlKAi~tEAG~~AIR~~r~~vT~~Df~kAv~  361 (364)
T TIGR01242       308 KMKLAEDVDLEAIAKLTEGASGADLKAICTEAGMFAIREERDYVTMDDFLKAVE  361 (364)
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             000123568799998747886630423434620477774456766999999987


No 24 
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.84  E-value=2.3e-21  Score=157.87  Aligned_cols=159  Identities=25%  Similarity=0.375  Sum_probs=121.6

Q ss_pred             CHHHHHHH------HHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf             88999998------620304868999999999987788640864444665668669967988868999999999707877
Q gi|254780829|r    8 SPREIVSE------LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF   81 (437)
Q Consensus         8 tP~~i~~~------Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF   81 (437)
                      ||+++-..      || -||||++||+.-.+-+  .|  ...+... .+--|+|||+.||||||||++||+||.+++|||
T Consensus       106 ~~~~~~~e~~~~it~d-dViGqEeAK~kcrli~--~y--LenPe~F-g~WAPknVLFyGppGTGKTm~Akalane~kvp~  179 (368)
T COG1223         106 TPREEDREIISDITLD-DVIGQEEAKRKCRLIM--EY--LENPERF-GDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL  179 (368)
T ss_pred             CCCHHHHHHHCCCCHH-HHHCHHHHHHHHHHHH--HH--HHCHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCE
T ss_conf             7514555661366176-6416398888879999--99--6496876-345754168778999648799998725457854


Q ss_pred             EEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             97143410121223431013467888765212789985654988886888755553114321100466898898616888
Q gi|254780829|r   82 IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEIS  161 (437)
Q Consensus        82 ~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  161 (437)
                      ..+-||++.     |+-|+.+..++.++...+.+.|+|.+|+++.++.+.+|-.+.+.|..  .+..+.++..|+.....
T Consensus       180 l~vkat~li-----GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDV--sEiVNALLTelDgi~en  252 (368)
T COG1223         180 LLVKATELI-----GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDV--SEIVNALLTELDGIKEN  252 (368)
T ss_pred             EEECHHHHH-----HHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHCCCCCCC
T ss_conf             871168888-----87743598999999998875198499840024555304578864549--99999999850174457


Q ss_pred             CCEEEEEECCCCCCCCCC
Q ss_conf             854998753554554433
Q gi|254780829|r  162 DKEIDIEVADTSSDISNF  179 (437)
Q Consensus       162 ~~~i~i~~~~~~~~~~~~  179 (437)
                      +..+.|..++.+..+++.
T Consensus       253 eGVvtIaaTN~p~~LD~a  270 (368)
T COG1223         253 EGVVTIAATNRPELLDPA  270 (368)
T ss_pred             CCEEEEEECCCHHHCCHH
T ss_conf             756999505984650788


No 25 
>KOG1051 consensus
Probab=99.83  E-value=2e-20  Score=151.88  Aligned_cols=284  Identities=22%  Similarity=0.259  Sum_probs=162.9

Q ss_pred             HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEC
Q ss_conf             99999862030486899999999998778864086444466566866996798886899999999970---787797143
Q gi|254780829|r   10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEV   86 (437)
Q Consensus        10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~da   86 (437)
                      ..+.+.|.+.|+||++|-+++|-||+      +...+++++....-+|++||+|+|||.|||+||.++   .--|+.+|.
T Consensus       554 ~~L~~~L~~~V~gQ~eAv~aIa~AI~------~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDm  627 (898)
T KOG1051         554 KKLEERLHERVIGQDEAVAAIAAAIR------RSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDM  627 (898)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH------HCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECH
T ss_conf             99999997544663778999999998------432035788888589997888413899999999997288642689614


Q ss_pred             CCEEE--------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             41012--------1223431013467888765212789985654988886888755553114321100466898898616
Q gi|254780829|r   87 TKFTE--------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDG  158 (437)
Q Consensus        87 T~ftE--------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  158 (437)
                      ++|.|        .||||.....-+.       ..+++.|...+-   ++.+++          .+....+.+.+.++.|
T Consensus       628 se~~evskligsp~gyvG~e~gg~Lt-------eavrrrP~sVvL---fdeIEk----------Ah~~v~n~llq~lD~G  687 (898)
T KOG1051         628 SEFQEVSKLIGSPPGYVGKEEGGQLT-------EAVKRRPYSVVL---FEEIEK----------AHPDVLNILLQLLDRG  687 (898)
T ss_pred             HHHHHHHHCCCCCCCCCCCHHHHHHH-------HHHHCCCCEEEE---EECHHH----------CCHHHHHHHHHHHHCC
T ss_conf             55555653048995554630577888-------997169965999---830222----------2888999999998627


Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf             88885499875355455443346676663210001101001354322100000102355332788863031011123678
Q gi|254780829|r  159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI  238 (437)
Q Consensus       159 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~  238 (437)
                      ..+|....                   ..++.+...++....+.........                            
T Consensus       688 rltDs~Gr-------------------~Vd~kN~I~IMTsn~~~~~i~~~~~----------------------------  720 (898)
T KOG1051         688 RLTDSHGR-------------------EVDFKNAIFIMTSNVGSSAIANDAS----------------------------  720 (898)
T ss_pred             CCCCCCCC-------------------EEECCCEEEEEECCCCHHHHHCCCC----------------------------
T ss_conf             40058886-------------------7504645999942631666640454----------------------------


Q ss_pred             HHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             88753222100222100135766565433210122343204665221124666420246640167542211212554334
Q gi|254780829|r  239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQG  318 (437)
Q Consensus       239 ~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~G  318 (437)
                            ...+..      ..+.       ..+..+.....+.....  .|.                   ++-+.|||.+
T Consensus       721 ------~~~~l~------~~~~-------~~~~~~~~k~~v~~~~~--~~~-------------------~~~~r~Ef~n  760 (898)
T KOG1051         721 ------LEEKLL------DMDE-------KRGSYRLKKVQVSDAVR--IYN-------------------KQFFRKEFLN  760 (898)
T ss_pred             ------CCCCCC------CCHH-------HHHHHHHHHHHHHHHHH--CCC-------------------CCCCCHHHHC
T ss_conf             ------100012------3100-------01233201333334320--135-------------------6556867855


Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             51268861554246788876434688999999998751968998424999999999984040012372467999999867
Q gi|254780829|r  319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE  398 (437)
Q Consensus       319 R~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~  398 (437)
                      |+..+..+.+|+.+++.+|..-+-...-.+    ++..++.+.+++.+...++...+.     .++|||.++..+++.+.
T Consensus       761 rid~i~lf~~l~~~~~~~i~~~~~~e~~~r----~~~~~~~~~v~~~~~~~v~~~~~d-----~~ygAr~ikr~i~~~~~  831 (898)
T KOG1051         761 RIDELDLNLPLDRDELIEIVNKQLTEIEKR----LEERELLLLVTDRVDDKVLFKGYD-----FDYGARPIKRSIEERFE  831 (898)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHH
T ss_conf             554055414255566665556677888877----666679999889997665305768-----47776689999999988


Q ss_pred             HHH-----CCCCCCCCCEEEECHH
Q ss_conf             762-----1275687768998599
Q gi|254780829|r  399 DIS-----FSASDLQEKTVVIDAE  417 (437)
Q Consensus       399 d~~-----fe~p~~~~~~v~Id~~  417 (437)
                      +.+     ++..+  ...+.|+.+
T Consensus       832 ~~la~~~l~ei~~--~~~~~i~~~  853 (898)
T KOG1051         832 NRLAEALLGEVED--GLTERILVA  853 (898)
T ss_pred             HHHHHHHEEEECC--CCEEEEEEC
T ss_conf             7776531143268--856999742


No 26 
>KOG0730 consensus
Probab=99.82  E-value=1.6e-20  Score=152.50  Aligned_cols=218  Identities=17%  Similarity=0.097  Sum_probs=159.0

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf             3048689999999999877886408644-----4466-566866996798886899999999970787797143410121
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPAD-----LRDE-LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI   92 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~-----~~~e-~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~   92 (437)
                      -|=|||+-|+.+..+|-       ++..     .|-. -.|++|||.||||||||++||++|.+++.+|+++.|.++--+
T Consensus       435 dIGGlE~lK~elq~~V~-------~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk  507 (693)
T KOG0730         435 DIGGLEELKRELQQAVE-------WPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK  507 (693)
T ss_pred             HCCCHHHHHHHHHHHHH-------HHHHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf             04578999999999986-------16656599987257887547777899862478999986463587264157899877


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf             22343101346788876521278998565498888688875555311432110046689889861688885499875355
Q gi|254780829|r   93 GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT  172 (437)
Q Consensus        93 gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~  172 (437)
                       |||+.-    .-+++.|..+...++|.+|.++++.....|.....   .-.....++++.+|++++...+.+.+..+++
T Consensus       508 -~vGeSE----r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNR  579 (693)
T KOG0730         508 -YVGESE----RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNR  579 (693)
T ss_pred             -HCCCHH----HHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCC---CHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf             -518258----99999999986269837744666666630478755---1489999999987004101470899950588


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             45544334667666321000110100135432210000010235533278886303101112367888753222100222
Q gi|254780829|r  173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF  252 (437)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~  252 (437)
                      +...+...  .++++.+.-+....+....+............--..++...+...+.++++++....+.+++..++...+
T Consensus       580 pd~ID~AL--lRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i  657 (693)
T KOG0730         580 PDMIDPAL--LRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESI  657 (693)
T ss_pred             HHHCCHHH--CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             10126977--5986533057515834788999999997339998655699999985467738999999999999998752


Q ss_pred             C
Q ss_conf             1
Q gi|254780829|r  253 D  253 (437)
Q Consensus       253 ~  253 (437)
                      +
T Consensus       658 ~  658 (693)
T KOG0730         658 E  658 (693)
T ss_pred             C
T ss_conf             6


No 27 
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.79  E-value=1.7e-19  Score=145.77  Aligned_cols=189  Identities=13%  Similarity=0.033  Sum_probs=121.7

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56686699679888689999999997078779714341012122343101346788876521278998565498888688
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA  130 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~  130 (437)
                      ..|+||||+||||||||++||++|++.++||+.+|++++... |||    ..-.++++++..+...+||.+++++++.-.
T Consensus       257 ~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~~-~vG----esE~~~r~~f~~A~~~aP~ilfiDEidk~~  331 (491)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFGG-IVG----ESESRMRQMIQLAETISPCILWIDEIDKAF  331 (491)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHH-HCC----HHHHHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf             999879997999987899999998663894699667997560-067----049999999999986198589974654542


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEE
Q ss_conf             87555531143211004668988986168888549987535545544334667666321000110100135432210000
Q gi|254780829|r  131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM  210 (437)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (437)
                      ..+..  ....+......++++..+.  +.......+..+++...+++  ...++++++..+-...|....+......+.
T Consensus       332 ~~~~~--~~d~g~s~rv~~~~Lt~m~--e~~~~VfViattN~~~~L~p--ellR~GRFD~~~~v~lP~~~~R~~I~~ihl  405 (491)
T CHL00195        332 SGLDS--KGDSGTSNRVLATFITWLS--EKKSPVFVVATANNIDSLPL--ELLRKGRFDEIFFLDLPNLEERELIFKIHL  405 (491)
T ss_pred             CCCCC--CCCCCHHHHHHHHHHHHHC--CCCCCEEEEEECCCCCCCCH--HHCCCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf             58888--8887232899999999864--68997699995899755898--770898777047648959899999999998


Q ss_pred             EH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             01--02355332788863031011123678887532221002
Q gi|254780829|r  211 SV--QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD  250 (437)
Q Consensus       211 ~~--~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~  250 (437)
                      ..  ......++.....+.+.++++++....+.++...+|..
T Consensus       406 ~~~~~~~~~~~d~~~la~~t~gfsGAeIe~~v~~A~~~A~~~  447 (491)
T CHL00195        406 KRFRPNSWQNYDIEILSQLTNKFSGAEIEQSIIEAMHHAFSE  447 (491)
T ss_pred             HCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf             544788755469999997685988899999999999999875


No 28 
>KOG0733 consensus
Probab=99.77  E-value=3.2e-19  Score=144.06  Aligned_cols=193  Identities=12%  Similarity=0.059  Sum_probs=131.7

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56686699679888689999999997078779714341012122343101346788876521278998565498888688
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA  130 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~  130 (437)
                      ..|+||||-||||||||.||+|+|++++|||++++||+.. -||-|+.-+    ++++.|..+...++|.+|++++++..
T Consensus       221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv-SGvSGESEk----kiRelF~~A~~~aPcivFiDeIDAI~  295 (802)
T KOG0733         221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV-SGVSGESEK----KIRELFDQAKSNAPCIVFIDEIDAIT  295 (802)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHH-CCCCCCCHH----HHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             7997516448998647899999752128854851414653-155752289----99999998736697599851100136


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC----CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf             8755553114321100466898898616888----854998753554554433466766632100011010013543221
Q gi|254780829|r  131 EERILDALVGKTATSNTREVFRKKLRDGEIS----DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK  206 (437)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (437)
                      -+|-.. ...+  ...-..+++..|++....    +.+++|..+++++.+++..  ++++++++.|--+.+....+....
T Consensus       296 pkRe~a-qreM--ErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaL--RRaGRFdrEI~l~vP~e~aR~~IL  370 (802)
T KOG0733         296 PKREEA-QREM--ERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPAL--RRAGRFDREICLGVPSETAREEIL  370 (802)
T ss_pred             CCHHHH-HHHH--HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHH--HCCCCCCCEEEECCCCHHHHHHHH
T ss_conf             440457-8899--99999999985100256666899769982478976558777--325655323530689668899999


Q ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             00000102355332788863031011123678887532221002221
Q gi|254780829|r  207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD  253 (437)
Q Consensus       207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~  253 (437)
                      ...-....--..++...++++++++-+++.-..+.++...+.-.-.+
T Consensus       371 ~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld  417 (802)
T KOG0733         371 RIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILD  417 (802)
T ss_pred             HHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             99986277787768999975188752141999999999999999862


No 29 
>KOG0733 consensus
Probab=99.75  E-value=5.9e-19  Score=142.29  Aligned_cols=192  Identities=17%  Similarity=0.072  Sum_probs=129.2

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE  131 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~  131 (437)
                      .|+||||.|||||||||||||+|.+++..|+++-|.++.-+ |||+.--    -+++.|..+...|+|.||+++++...-
T Consensus       544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk-YVGESEr----AVR~vFqRAR~saPCVIFFDEiDaL~p  618 (802)
T KOG0733         544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK-YVGESER----AVRQVFQRARASAPCVIFFDEIDALVP  618 (802)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHH-HHHHHHH----HHHHHHHHHHCCCCEEEEECCHHHCCC
T ss_conf             98723875799861889999985030475476238899987-7423789----999999986238983898511120276


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf             75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r  132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS  211 (437)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      .|....   ........++++.+|++.+.-..+-.+..+++++..++..  .++++.+.-....++....+....+....
T Consensus       619 ~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAi--LRPGRlDk~LyV~lPn~~eR~~ILK~~tk  693 (802)
T KOG0733         619 RRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAI--LRPGRLDKLLYVGLPNAEERVAILKTITK  693 (802)
T ss_pred             CCCCCC---CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHH--CCCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             557777---5058999999998731621114259995068976555655--18775574245069987889999999853


Q ss_pred             --HHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             --102355332788863031--011123678887532221002221
Q gi|254780829|r  212 --VQKCYPELMRDESDRLID--MDTVHRDSIQMVENYGIVFLDEFD  253 (437)
Q Consensus       212 --~~~a~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~f~~~~~  253 (437)
                        ....-..+..+++.+.+.  ++++++.|..+-++.-.+......
T Consensus       694 n~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~  739 (802)
T KOG0733         694 NTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF  739 (802)
T ss_pred             CCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5799887545899985123226875365999999999999999986


No 30 
>KOG0652 consensus
Probab=99.72  E-value=5.3e-19  Score=142.59  Aligned_cols=204  Identities=15%  Similarity=0.070  Sum_probs=150.5

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE  131 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~  131 (437)
                      .|+|+||+||||||||||||+.|.--++.|.+..|..+.||+     ++.++.-++++|.-+.++|+++||+++.++.+.
T Consensus       204 pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf-----IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt  278 (424)
T KOG0652         204 PPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF-----IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT  278 (424)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHHHH-----HCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCC
T ss_conf             997227657999757799999987401068873264777665-----334188999999875334983899730023233


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf             75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r  132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS  211 (437)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      +|-.....|..+...+...++.+++.+..++..-.+..+++-..+++.  ..+.++-++++....+....+.....++-.
T Consensus       279 KRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPA--LlRSGRLDRKIEfP~Pne~aRarIlQIHsR  356 (424)
T KOG0652         279 KRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPA--LLRSGRLDRKIEFPHPNEEARARILQIHSR  356 (424)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH--HHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             436531234389999999999860489975626788521643434888--864466444434889977898899988640


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC
Q ss_conf             102355332788863031011123678887532221002221001357665
Q gi|254780829|r  212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN  262 (437)
Q Consensus       212 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~  262 (437)
                      .....+....++..|.++.+.++.-...+++.--++.+.....+...++-.
T Consensus       357 KMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfme  407 (424)
T KOG0652         357 KMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFME  407 (424)
T ss_pred             CCCCCCCCCHHHHHHCCCCCCCHHHEEEHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             057788879899853335667232133005540899864653012788999


No 31 
>KOG0738 consensus
Probab=99.70  E-value=2.4e-17  Score=131.88  Aligned_cols=145  Identities=20%  Similarity=0.254  Sum_probs=99.9

Q ss_pred             HHHHHHHH------------CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99998620------------304868999999999987788640864444665668669967988868999999999707
Q gi|254780829|r   11 EIVSELDR------------YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        11 ~i~~~Ld~------------~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++++.|.+            -|.|-++||+.|-.||---..=-..-.+.|.  .=++|||+||||||||+|||++|-+.+
T Consensus       193 ~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Girr--PWkgvLm~GPPGTGKTlLAKAvATEc~  270 (491)
T KOG0738         193 DLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRR--PWKGVLMVGPPGTGKTLLAKAVATECG  270 (491)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             999999888860599867676316499999999887544424888742446--530005567999747899999988616


Q ss_pred             CCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf             87797143410121223431013467888765212789985654988886888755553114321100466898898616
Q gi|254780829|r   79 APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDG  158 (437)
Q Consensus        79 VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  158 (437)
                      .-||-+++|++|-- |-|+. |-+++-|   |..+...|+.-||+++|+.....|...  ..|..+......++.++++.
T Consensus       271 tTFFNVSsstltSK-wRGeS-EKlvRlL---FemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~  343 (491)
T KOG0738         271 TTFFNVSSSTLTSK-WRGES-EKLVRLL---FEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGV  343 (491)
T ss_pred             CEEEEECHHHHHHH-HCCCH-HHHHHHH---HHHHHHHCCCEEEHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHCC
T ss_conf             72787402456555-32526-9999999---999987488535335677887257986--50367888888999986334


Q ss_pred             CCCCCE
Q ss_conf             888854
Q gi|254780829|r  159 EISDKE  164 (437)
Q Consensus       159 ~~~~~~  164 (437)
                      ......
T Consensus       344 ~~t~e~  349 (491)
T KOG0738         344 QGTLEN  349 (491)
T ss_pred             CCCCCC
T ss_conf             444456


No 32 
>KOG0729 consensus
Probab=99.69  E-value=1.3e-17  Score=133.65  Aligned_cols=212  Identities=17%  Similarity=0.102  Sum_probs=145.1

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE  131 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~  131 (437)
                      .|+||||.|||||||||+||++|.--++-|+.+=+|++.|. |||+.    ++-+++.|..+..+..|.+|++++++.+.
T Consensus       210 PPKGvllyGPPGtGKTL~ARAVANRTdAcFIRViGSELVQK-YvGEG----ARMVRElFeMAr~KKACiiFFDEiDAiGG  284 (435)
T KOG0729         210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK-YVGEG----ARMVRELFEMARTKKACIIFFDEIDAIGG  284 (435)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHH-HHHHH----HHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf             98733786899986108999874566745876311899999-86246----89999999985236527998410102267


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf             75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r  132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS  211 (437)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      -|-.+..+|..+...+...+..+|+.+..-.+--+...+++++.+++  ..+++++-++++....+...++.....++..
T Consensus       285 aRFDDg~ggDNEVQRTMLEli~QLDGFDpRGNIKVlmATNRPdtLDp--ALlRPGRlDRKVEF~LPDlegR~~I~kIHak  362 (435)
T KOG0729         285 ARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP--ALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK  362 (435)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCH--HHCCCCCCCCCEECCCCCCCCCCEEEEEECC
T ss_conf             20357888727999999999986037788887589863489887687--6628764231121058762355125777411


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHC-CCCCCCCCCCCCCCH
Q ss_conf             102355332788863031011123678887532221002221001-357665654332101
Q gi|254780829|r  212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGV  271 (437)
Q Consensus       212 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~-~~~~~~~~~~~~~g~  271 (437)
                      ....-.....+.+.++.+...++..-..+.+.--- .+.+..|++ .+++-.+......|-
T Consensus       363 sMsverdIR~eLlarLCpnsTGAeiRSVCtEAGMf-AIraRRkvaTEKDFL~Av~KVvkgy  422 (435)
T KOG0729         363 SMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMF-AIRARRKVATEKDFLDAVNKVVKGY  422 (435)
T ss_pred             CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             14423221699998658897425788888774378-8887762200888999999998777


No 33 
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.68  E-value=2.4e-16  Score=125.40  Aligned_cols=221  Identities=15%  Similarity=0.098  Sum_probs=133.5

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCH
Q ss_conf             04868999999999987788640864444665668669967988868999999999707877971434101212234310
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV   99 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DV   99 (437)
                      +.|-+++|..+-.++-.-.++-..-.. -.--.|+++||.||||||||+|||++|.+++.||+++++++++-. |    +
T Consensus       244 iggl~~~k~~l~e~v~~~~~~~e~~~~-~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk-~----v  317 (494)
T COG0464         244 IGGLEEAKEELKEAIETPLKRPELFRK-LGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK-W----V  317 (494)
T ss_pred             ECCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHH-H----H
T ss_conf             236377999999999999970887632-589888369998899975899999987544982488433555407-7----6


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             13467888765212789985654988886888755553114321100466898898616888854998753554554433
Q gi|254780829|r  100 EQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF  179 (437)
Q Consensus       100 es~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~  179 (437)
                      +.....+...+..+.+.++|.+|+++++.....+.....   .......++++..+...+.......+..++.+...+..
T Consensus       318 Gesek~ir~~F~~A~~~~p~iifiDEiDs~~~~r~~~~~---~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~ld~a  394 (494)
T COG0464         318 GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPA  394 (494)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCC---CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHH
T ss_conf             599999999999999669988974886667412899876---37999999999997475443764899647983326875


Q ss_pred             CCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             46676663210001101001354322100000102--3553327888630310111236788875322210022
Q gi|254780829|r  180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK--CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE  251 (437)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~  251 (437)
                      ..  +++++...+....+....+......+.....  ....+....+.+.+.+.++.+.+..+-++...++...
T Consensus       395 ~l--R~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~  466 (494)
T COG0464         395 LL--RPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREA  466 (494)
T ss_pred             HH--CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             62--4366303787179898999999999854156511556419999987527789999999999999899854


No 34 
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.65  E-value=3.9e-17  Score=130.50  Aligned_cols=68  Identities=31%  Similarity=0.511  Sum_probs=49.2

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCEEEC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             86699679888689999999997078---7797143410121-----------223431013467888765212789985
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRR  119 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~V---PF~~~daT~ftE~-----------gyvG~DVes~i~~l~~~a~~~~~~a~~  119 (437)
                      .|+||+||||||||+|||+||+.+++   ||++.||++|++.           ||||.+-+..+..       .+++.+.
T Consensus         4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~-------~v~~~p~   76 (168)
T pfam07724         4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTE-------AVRRKPY   76 (168)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHH-------HHHHCCC
T ss_conf             799988989989999999999996798534488557565425699987058998726242650789-------9983898


Q ss_pred             HHHHHHHHH
Q ss_conf             654988886
Q gi|254780829|r  120 DEVREQASI  128 (437)
Q Consensus       120 ~i~~~~~~~  128 (437)
                      +++..+.++
T Consensus        77 ~VillDEIe   85 (168)
T pfam07724        77 SIVLIDEIE   85 (168)
T ss_pred             CEEEEHHHH
T ss_conf             489865776


No 35 
>KOG0736 consensus
Probab=99.64  E-value=1e-16  Score=127.85  Aligned_cols=101  Identities=21%  Similarity=0.241  Sum_probs=78.7

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68669967988868999999999707877971434101212234310134678887652127899856549888868887
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE  132 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~  132 (437)
                      -|||||.|||||||||||||+|-+.+..|+++-|.++.-| |||+.-+.    +++.|..+...+||.||+++++..+=.
T Consensus       705 RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM-YVGqSE~N----VR~VFerAR~A~PCVIFFDELDSlAP~  779 (953)
T KOG0736         705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM-YVGQSEEN----VREVFERARSAAPCVIFFDELDSLAPN  779 (953)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCEEEEEEECCHHHHHH-HHCCHHHH----HHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf             3505887799985579999987543036785058899887-74301888----999999854469749983121232756


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             555531143211004668988986168
Q gi|254780829|r  133 RILDALVGKTATSNTREVFRKKLRDGE  159 (437)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (437)
                      |+...-.|+..+. ...+++++++.+.
T Consensus       780 RG~sGDSGGVMDR-VVSQLLAELDgls  805 (953)
T KOG0736         780 RGRSGDSGGVMDR-VVSQLLAELDGLS  805 (953)
T ss_pred             CCCCCCCCCCHHH-HHHHHHHHHHCCC
T ss_conf             7887886540899-9999999862666


No 36 
>KOG0728 consensus
Probab=99.62  E-value=1.1e-16  Score=127.55  Aligned_cols=140  Identities=17%  Similarity=0.166  Sum_probs=99.1

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE  131 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~  131 (437)
                      .|+|+||.||||+||||||+++|...+--|+.+++|++.|- |+|+    +.+-+++.|..+.+.|+.+||-++++..+.
T Consensus       180 QPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk-~ige----gsrmvrelfvmarehapsiifmdeidsigs  254 (404)
T KOG0728         180 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGE----GSRMVRELFVMAREHAPSIIFMDEIDSIGS  254 (404)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECHHHHHHH-HHHH----HHHHHHHHHHHHHHCCCCEEEEHHCCCCCC
T ss_conf             87604884699975629999987541407999644999999-8501----389999999998750882675000012123


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf             7555531143211004668988986168888549987535545544334667666321000110100
Q gi|254780829|r  132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK  198 (437)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (437)
                      .|.-...+|..+...+...++.+++.++.+.+--.+-.+++-+.+++.  ..++++-++.+....+.
T Consensus       255 ~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~a--llrpgridrkiefp~p~  319 (404)
T KOG0728         255 SRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPA--LLRPGRIDRKIEFPPPN  319 (404)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH--HCCCCCCCCCCCCCCCC
T ss_conf             434578986389999999999740240003662699841642224686--63877545556489987


No 37 
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938    The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.61  E-value=3.6e-15  Score=117.74  Aligned_cols=223  Identities=15%  Similarity=0.046  Sum_probs=131.2

Q ss_pred             CEECHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCC
Q ss_conf             304868999999999987788--640864444665668669967988868999999999707877971434101212234
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWR--RQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG   96 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~--R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG   96 (437)
                      -|=|-+++|..|--||---.|  .++-.-+.   -.|+|+||.||||||||||||++|.+.++.|+.+-|.+..-- +||
T Consensus       542 diGGlee~kq~lreaveWPlk~~~~f~k~G~---~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lsk-WvG  617 (980)
T TIGR01243       542 DIGGLEEVKQELREAVEWPLKAPEVFEKLGI---RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK-WVG  617 (980)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCC---CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHH-HHC
T ss_conf             1466789999998775234440589986078---899734874689861688888774014564677407312234-403


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf             31013467888765212789985654988886888755553114321100466898898616888854998753554554
Q gi|254780829|r   97 RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI  176 (437)
Q Consensus        97 ~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~  176 (437)
                          -.-..++..+..+...||+.+|+++++...-.|....... .-.+...++++..++........+.+..+++++.+
T Consensus       618 ----ese~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~-~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPdi~  692 (980)
T TIGR01243       618 ----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEK-GVTDRIVNQLLTELDGLEELSDVVVIAATNRPDIL  692 (980)
T ss_pred             ----HHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf             ----2479999999986412873787302111054124421001-02689999999864044343665898615887423


Q ss_pred             CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             4334667666321000110100135432210000010235533278886303101112367888753222100222
Q gi|254780829|r  177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF  252 (437)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~  252 (437)
                      ++..  .+++..++-+....+....+.....++................+.+.+..+++....+-+......+..+
T Consensus       693 dPal--lrPGr~dr~i~vP~Pd~~ar~~ifk~ht~~~~l~~dv~l~~la~~teGytGadi~a~~rea~~~~~r~~~  766 (980)
T TIGR01243       693 DPAL--LRPGRLDRLILVPAPDEEARLEIFKIHTRSMPLAEDVDLEELAKKTEGYTGADIEAVVREAALAALREVV  766 (980)
T ss_pred             CCCC--CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             6100--4887412168605985567676765531113530134389998651687632299999999999999973


No 38 
>KOG0727 consensus
Probab=99.60  E-value=7.5e-16  Score=122.19  Aligned_cols=137  Identities=20%  Similarity=0.253  Sum_probs=96.2

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE  131 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~  131 (437)
                      .|.|+||.||||||||+|||++|.--.+.|+.+-+|+|.+. |.|+.    .+-+++.+.-+.++|+.+||+++++....
T Consensus       188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvqk-ylgeg----prmvrdvfrlakenapsiifideidaiat  262 (408)
T KOG0727         188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK-YLGEG----PRMVRDVFRLAKENAPSIIFIDEIDAIAT  262 (408)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCHHEEEECCHHHHHH-HHCCC----CHHHHHHHHHHHCCCCCEEEEEHHHHHHH
T ss_conf             98622775799975789999986126111446301899999-85548----38999999987616983798622456766


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEE---EEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf             7555531143211004668988986168888549---987535545544334667666321000110100
Q gi|254780829|r  132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEI---DIEVADTSSDISNFDIPGGASVGILNLSELFSK  198 (437)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (437)
                      +| .++..|.+  .+....+..++-.+.+++-..   .|..+++...+++.  ..++++-++++....+.
T Consensus       263 kr-fdaqtgad--revqril~ellnqmdgfdq~~nvkvimatnradtldpa--llrpgrldrkiefplpd  327 (408)
T KOG0727         263 KR-FDAQTGAD--REVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPA--LLRPGRLDRKIEFPLPD  327 (408)
T ss_pred             HH-CCCCCCCC--HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH--HCCCCCCCCCCCCCCCC
T ss_conf             41-24444631--89999999999751476766655899832755566876--62876434443577985


No 39 
>KOG0726 consensus
Probab=99.58  E-value=4.8e-16  Score=123.44  Aligned_cols=207  Identities=13%  Similarity=0.032  Sum_probs=130.6

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56686699679888689999999997078779714341012122343101346788876521278998565498888688
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA  130 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~  130 (437)
                      ..|+||+|+||||||||||||++|.--.+.|..+-+|++.|- |.|+    +..-+++.|..+.+.|+.++|++++++.+
T Consensus       217 kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk-ylGd----GpklvRqlF~vA~e~apSIvFiDEIdAiG  291 (440)
T KOG0726         217 KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGD----GPKLVRELFRVAEEHAPSIVFIDEIDAIG  291 (440)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHCC----CHHHHHHHHHHHHHCCCCEEEEEHHHHHC
T ss_conf             999705886799975368888772455212455650899998-7365----51999999988875298269864001104


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEE
Q ss_conf             87555531143211004668988986168888549987535545544334667666321000110100135432210000
Q gi|254780829|r  131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM  210 (437)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (437)
                      -+|-....+|..+-..+...++.++..++.-...-.|-.++.-..++  ...-+++.-++.+....+...-++....++-
T Consensus       292 tKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LD--PaLiRPGrIDrKIef~~pDe~TkkkIf~IHT  369 (440)
T KOG0726         292 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD--PALIRPGRIDRKIEFPLPDEKTKKKIFQIHT  369 (440)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC--HHHCCCCCCCCCCCCCCCCHHHHCEEEEEEE
T ss_conf             52134788507899999999987426866567758997416534467--7552787543111257975563231568750


Q ss_pred             EHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCC
Q ss_conf             010235533278886303101112367888753222100222100135766565
Q gi|254780829|r  211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI  264 (437)
Q Consensus       211 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~  264 (437)
                      .-......+..+..--.-+..++++....+.++-..|.+.-.-++.+.++..+.
T Consensus       370 s~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~  423 (440)
T KOG0726         370 SRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAK  423 (440)
T ss_pred             CCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             243001246699975201335631088898777689999987621538799999


No 40 
>KOG0737 consensus
Probab=99.56  E-value=1.5e-14  Score=113.82  Aligned_cols=182  Identities=19%  Similarity=0.132  Sum_probs=116.2

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56686699679888689999999997078779714341012122343101346788876521278998565498888688
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA  130 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~  130 (437)
                      ..|+||||.||||||||+|||++|++++.+|+.++.+++|.--| |+.- -   -+...|..+-+-.|++||+++++...
T Consensus       125 ~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf-gE~e-K---lv~AvFslAsKl~P~iIFIDEvds~L  199 (386)
T KOG0737         125 RPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF-GEAQ-K---LVKAVFSLASKLQPSIIFIDEVDSFL  199 (386)
T ss_pred             CCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHH-HHHH-H---HHHHHHHHHHHCCCCEEEHHHHHHHH
T ss_conf             68643051189982188999999987279710001365532667-7788-8---99999820653486156566588898


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCE---EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCE
Q ss_conf             8755553114321100466898898616888854---9987535545544334667666321000110100135432210
Q gi|254780829|r  131 EERILDALVGKTATSNTREVFRKKLRDGEISDKE---IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKK  207 (437)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (437)
                      ..| .   .+.++.......+-..+=++..++..   ++...++++..++.....+.+.++..++..    ..++.....
T Consensus       200 ~~R-~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~----~~qR~kILk  271 (386)
T KOG0737         200 GQR-R---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPD----AEQRRKILK  271 (386)
T ss_pred             HHC-C---CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEECCCC----HHHHHHHHH
T ss_conf             640-4---64279999999999998616467887159997079998437899998476436537984----444999999


Q ss_pred             EEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             00001023553327888630310111236788875322
Q gi|254780829|r  208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG  245 (437)
Q Consensus       208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  245 (437)
                      +......--..++..+.++++.+.++.+.-..+..+..
T Consensus       272 viLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~  309 (386)
T KOG0737         272 VILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAAL  309 (386)
T ss_pred             HHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             99424346877698888876089867789999998767


No 41 
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.56  E-value=3.6e-13  Score=104.79  Aligned_cols=78  Identities=28%  Similarity=0.448  Sum_probs=54.1

Q ss_pred             CCCCHHHHHHHHHHCEECHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf             76888999998620304868999---999999987788640864444665668669967988868999999999707877
Q gi|254780829|r    5 FNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF   81 (437)
Q Consensus         5 ~~ltP~~i~~~Ld~~VvGQ~~AK---k~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF   81 (437)
                      .-|-|+.    ||+| |||++-.   +.+-.++-++              .-++++|.||||||||-||+.+|+..+.+|
T Consensus        20 ~rmRP~~----Lde~-vGQ~hllg~g~~Lrr~i~~~--------------~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F   80 (726)
T PRK13341         20 DRLRPRT----LEEF-VGQDHILGEGRLLRRAIKAD--------------RVGSLILYGPPGVGKTTLARIIANHTRAHF   80 (726)
T ss_pred             HHHCCCC----HHHH-CCCHHHCCCCCHHHHHHHCC--------------CCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf             8629998----7773-59575428982899999769--------------998278889799999999999988748867


Q ss_pred             EEEECCCEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             97143410121223431013467888765212
Q gi|254780829|r   82 IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI  113 (437)
Q Consensus        82 ~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~  113 (437)
                      +..+|            |.+.+.++......+
T Consensus        81 ~~lsA------------v~sgvkdlr~ii~~A  100 (726)
T PRK13341         81 SSLNA------------VLAGVKDLRAEVDAA  100 (726)
T ss_pred             EEEEC------------CCCCHHHHHHHHHHH
T ss_conf             99856------------203779999999999


No 42 
>KOG0735 consensus
Probab=99.55  E-value=1e-14  Score=114.78  Aligned_cols=151  Identities=19%  Similarity=0.197  Sum_probs=111.4

Q ss_pred             EECHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCC
Q ss_conf             0486899999999998--77886408644446656686699679888689999999997078779714341012122343
Q gi|254780829|r   20 IIGQQDAKRAVAIALR--NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR   97 (437)
Q Consensus        20 VvGQ~~AKk~lavav~--nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~   97 (437)
                      |=|-.+||++|--.+-  ..|--++.+-.+|   .++||||.||||||||+||-++|...++-|+++-|.++.-- |+|.
T Consensus       669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr---~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K-yIGa  744 (952)
T KOG0735         669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLR---LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK-YIGA  744 (952)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCHHHHHHCCCC---CCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHH-HHCC
T ss_conf             3358999999999985541036788608866---65545887799985788888888537805998258899998-7450


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf             10134678887652127899856549888868887555531143211004668988986168888549987535545544
Q gi|254780829|r   98 NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS  177 (437)
Q Consensus        98 DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~  177 (437)
                      .-+.    +++.|..+...+||..|+++.+..+-+|++++-+-.   +...++++.+|++-++-+.+..+..+.+++-.+
T Consensus       745 SEq~----vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRpdliD  817 (952)
T KOG0735         745 SEQN----VRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRPDLID  817 (952)
T ss_pred             CHHH----HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCH---HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
T ss_conf             0788----999999865149748971210243766687777742---999999987603633445389997337834367


Q ss_pred             CCCC
Q ss_conf             3346
Q gi|254780829|r  178 NFDI  181 (437)
Q Consensus       178 ~~~~  181 (437)
                      +...
T Consensus       818 pALL  821 (952)
T KOG0735         818 PALL  821 (952)
T ss_pred             HHHC
T ss_conf             7662


No 43 
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.54  E-value=6.1e-14  Score=109.80  Aligned_cols=70  Identities=31%  Similarity=0.514  Sum_probs=52.0

Q ss_pred             CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             76888999998620304868999999999987788640864444665668669967988868999999999707877971
Q gi|254780829|r    5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus         5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      -.|-|+.    |++| |||++.++.+..++..--        .+.+.. +.+||.||||||||-||+-+|++++.+|...
T Consensus        16 ~~lRP~~----l~e~-vGQehl~~~l~~~i~a~~--------~~~~~l-~h~lf~GPPG~GKTTlAriiAk~~~~~~~~~   81 (234)
T pfam05496        16 RSLRPRR----LDEY-IGQEKVKENLKIFIEAAK--------KRGEAL-DHVLLYGPPGLGKTTLANIIANEMGVNIRIT   81 (234)
T ss_pred             HCCCCCC----HHHC-CCHHHHHHHHHHHHHHHH--------HCCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf             5549897----6660-694999999999999887--------427776-6278878999988899999998408753761


Q ss_pred             ECCC
Q ss_conf             4341
Q gi|254780829|r   85 EVTK   88 (437)
Q Consensus        85 daT~   88 (437)
                      +|..
T Consensus        82 s~~~   85 (234)
T pfam05496        82 SGPA   85 (234)
T ss_pred             CCHH
T ss_conf             4266


No 44 
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938    The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.53  E-value=1e-14  Score=114.79  Aligned_cols=159  Identities=17%  Similarity=0.142  Sum_probs=118.1

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE  131 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~  131 (437)
                      .|+||||+||||||||||||++|.++++-|+.+.|.+.+-- |+|+.-    .+|+..+..+.+.||..+|+++++...-
T Consensus       239 PPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeimsk-y~Ge~e----~~lr~if~eaeenaP~iifideidaiaP  313 (980)
T TIGR01243       239 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIMSK-YYGESE----ERLREIFKEAEENAPSIIFIDEIDAIAP  313 (980)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHH-HCCCCH----HHHHHHHHHHHHCCCCEEEEECHHHCCC
T ss_conf             98735875589861789999987530551788506034433-136307----8999999865305870787412110076


Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf             75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r  132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS  211 (437)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (437)
                      +|.--  .|.. ......+++.+++....-+..|.+..+++++.+++..  .+++.+++.+....+...++.....++..
T Consensus       314 kr~e~--~Gev-e~r~v~qlltlmdGlk~rG~v~viGatnrP~a~dPal--rrPGrfdrei~~~~Pd~~~r~eil~~htr  388 (980)
T TIGR01243       314 KREEV--TGEV-EKRVVAQLLTLMDGLKGRGKVIVIGATNRPDALDPAL--RRPGRFDREIEIGVPDKEGRKEILQIHTR  388 (980)
T ss_pred             CCCCH--HHHH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH--CCCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf             41000--0168-8999999999974002487289981468850026224--27886443357418854567888876414


Q ss_pred             HHHHHHHHH
Q ss_conf             102355332
Q gi|254780829|r  212 VQKCYPELM  220 (437)
Q Consensus       212 ~~~a~~~~~  220 (437)
                      ..+....+.
T Consensus       389 ~mP~~~d~~  397 (980)
T TIGR01243       389 NMPLAEDVD  397 (980)
T ss_pred             CCCCHHHCC
T ss_conf             787501100


No 45 
>KOG0651 consensus
Probab=99.50  E-value=3.1e-14  Score=111.67  Aligned_cols=126  Identities=20%  Similarity=0.269  Sum_probs=86.3

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56686699679888689999999997078779714341012122343101346788876521278998565498888688
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA  130 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~  130 (437)
                      ..|+++||.||||+|||++|+++|.-+||.|+++.++++..- |.|+-.--    +++.+.++.+..+|.+|.+++++.+
T Consensus       164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k-yiGEsaRl----IRemf~yA~~~~pciifmdeiDAig  238 (388)
T KOG0651         164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK-YIGESARL----IRDMFRYAREVIPCIIFMDEIDAIG  238 (388)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHH-HCCCHHHH----HHHHHHHHHHHCCEEEEEHHHHHHC
T ss_conf             788256876799986459999999865985477447666330-02657889----9999977865275577510123114


Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC---CEEEEEECCCCCCCCCCCCCCC
Q ss_conf             87555531143211004668988986168888---5499875355455443346676
Q gi|254780829|r  131 EERILDALVGKTATSNTREVFRKKLRDGEISD---KEIDIEVADTSSDISNFDIPGG  184 (437)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~  184 (437)
                      ..+   ..-+..++......+-.++..+.+.+   .+-.|...+++..+.++...++
T Consensus       239 GRr---~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpG  292 (388)
T KOG0651         239 GRR---FSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPG  292 (388)
T ss_pred             CEE---ECCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCCCCCCHHHCCCC
T ss_conf             577---335552059999999999874214012066317985388665665542875


No 46 
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.49  E-value=6.8e-13  Score=103.02  Aligned_cols=66  Identities=24%  Similarity=0.436  Sum_probs=49.5

Q ss_pred             CCCCCHHHHHHHHHHCEECHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             676888999998620304868999---99999998778864086444466566866996798886899999999970787
Q gi|254780829|r    4 TFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus         4 ~~~ltP~~i~~~Ld~~VvGQ~~AK---k~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      +.-|-|+.    ||++ |||++..   +.|.-++-++              ...++||.||||||||-||+.||+.++.+
T Consensus         4 Aer~RP~~----lde~-vGQ~hllg~~~~L~~~i~~~--------------~~~s~Il~GPPG~GKTTlA~iiA~~~~~~   64 (417)
T PRK13342          4 AERMRPKT----LDEV-VGQEHLLGPGKPLRRMIEAG--------------RLSSMILWGPPGTGKTTLARIIAGATDAE   64 (417)
T ss_pred             HHHHCCCC----HHHH-CCCHHHHCCCHHHHHHHHCC--------------CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             16449998----8885-79877608971999999769--------------99759988969998999999999986898


Q ss_pred             EEEEECCC
Q ss_conf             79714341
Q gi|254780829|r   81 FIKVEVTK   88 (437)
Q Consensus        81 F~~~daT~   88 (437)
                      |+..+||.
T Consensus        65 f~~lnA~~   72 (417)
T PRK13342         65 FEALSAVT   72 (417)
T ss_pred             EEEEECCC
T ss_conf             89961410


No 47 
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.43  E-value=1.4e-12  Score=101.05  Aligned_cols=74  Identities=28%  Similarity=0.517  Sum_probs=59.1

Q ss_pred             CCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             68889999986203048689999999999877886408644446656686699679888689999999997078779714
Q gi|254780829|r    6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE   85 (437)
Q Consensus         6 ~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~d   85 (437)
                      +|-|+    .|++| |||++.|+.|+|++----+|        .+- .-.+||.||||.|||-||+-+|++++++|-..+
T Consensus        18 ~lRP~----~l~ef-iGQ~~i~~~L~v~i~Aak~r--------~e~-ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~ts   83 (328)
T PRK00080         18 SLRPK----SLDEF-IGQEKVKENLKIFIEAAKKR--------GEA-LDHVLLYGPPGLGKTTLANIIANEMGVNIRITS   83 (328)
T ss_pred             CCCCC----CHHHC-CCHHHHHHHHHHHHHHHHHC--------CCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCCEECC
T ss_conf             55988----57663-59599999999999999964--------999-880576588998899999999998688815624


Q ss_pred             CCCEEECC
Q ss_conf             34101212
Q gi|254780829|r   86 VTKFTEIG   93 (437)
Q Consensus        86 aT~ftE~g   93 (437)
                      |..+.-.|
T Consensus        84 GP~lek~~   91 (328)
T PRK00080         84 GPALEKAG   91 (328)
T ss_pred             CCCCCCHH
T ss_conf             50016747


No 48 
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252   This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.43  E-value=9e-12  Score=95.72  Aligned_cols=245  Identities=24%  Similarity=0.325  Sum_probs=157.3

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCE
Q ss_conf             0486899999999998778864086444466566866996798886899999999970----------787797143410
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA----------GAPFIKVEVTKF   89 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l----------~VPF~~~daT~f   89 (437)
                      |||||.|-|+|=--|              .+.-|-.|||+||||+|||--||-.=.++          |+||+=+||||+
T Consensus       157 iVGQerAI~aLlaK~--------------aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTL  222 (616)
T TIGR02903       157 IVGQERAIKALLAKL--------------ASPFPQHIILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTL  222 (616)
T ss_pred             CCCHHHHHHHHHHHH--------------CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC
T ss_conf             333468999999763--------------188866078557338847899999876213687447611378575157626


Q ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf             12122343101346788876521278998565498888688875555311432110046689889861688885499875
Q gi|254780829|r   90 TEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV  169 (437)
Q Consensus        90 tE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~  169 (437)
                      .                     ||+++-                                                    
T Consensus       223 R---------------------WDPREv----------------------------------------------------  229 (616)
T TIGR02903       223 R---------------------WDPREV----------------------------------------------------  229 (616)
T ss_pred             C---------------------CCCCCC----------------------------------------------------
T ss_conf             6---------------------774101----------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             35545544334667666321000110100135432210000010235533278886303101112367888753222100
Q gi|254780829|r  170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL  249 (437)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~  249 (437)
                         ++++-+..+.+-=|..-+++.+.-               ++.-..+|                   ..-.|-|+.|+
T Consensus       230 ---TNPLLGSVHDPIYQGa~RDLAE~G---------------vPEPk~GL-------------------VT~AHGGvLFI  272 (616)
T TIGR02903       230 ---TNPLLGSVHDPIYQGARRDLAETG---------------VPEPKLGL-------------------VTDAHGGVLFI  272 (616)
T ss_pred             ---CCCCCCCCCCCCCCCCCHHHCCCC---------------CCCCCCCC-------------------CCCCCCCEEEE
T ss_conf             ---477677625765567640110478---------------79898987-------------------10047756765


Q ss_pred             CCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC---CCCCCCCCHH----HHHHCCCCCCCC--------CCCCCC
Q ss_conf             2221001357665654332101223432046652211---2466642024----664016754221--------121255
Q gi|254780829|r  250 DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST---KYGSINTDHI----LFIASGAFHVSR--------PADLLP  314 (437)
Q Consensus       250 ~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~---~~~~~~~~~~----~~i~~~~~~~~k--------~~glip  314 (437)
                      ||+...            ..=.|.+++...|..+|.-   .|-+-.....    -++..||+.|..        |+.+-|
T Consensus       273 DEIGEL------------D~lLQnKLLKVLEDKrV~F~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eINp  340 (616)
T TIGR02903       273 DEIGEL------------DPLLQNKLLKVLEDKRVEFSSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEINP  340 (616)
T ss_pred             ECHHHH------------HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCH
T ss_conf             021122------------27876324443226436653212487537865588885226888256872661588244051


Q ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             43345126886155424678887643468899999999875196899842499999999998404001237246799999
Q gi|254780829|r  315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME  394 (437)
Q Consensus       315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E  394 (437)
                      =+--|=..+ =|+||+-+|...|...             +.+.+.-+..++--+.||+-..+        | |.=-.|+-
T Consensus       341 ALRSRCaEv-fFePL~p~dI~~Iv~~-------------AA~klnv~L~~gV~e~Ia~YTie--------G-RkAvnILA  397 (616)
T TIGR02903       341 ALRSRCAEV-FFEPLTPEDIKEIVLN-------------AAEKLNVKLAEGVEELIARYTIE--------G-RKAVNILA  397 (616)
T ss_pred             HHHCCCCEE-ECCCCCHHHHHHHHHH-------------HHHHCCCCCCCCHHHHHHHCCCC--------C-HHHHHHHH
T ss_conf             233014313-2179887899999999-------------88861770003648787214713--------1-12223465


Q ss_pred             HHHHHHHCCCCCC--CCCEEEECHHHHHHHH
Q ss_conf             9867762127568--7768998599999899
Q gi|254780829|r  395 RVLEDISFSASDL--QEKTVVIDAEYVRLHI  423 (437)
Q Consensus       395 ~~l~d~~fe~p~~--~~~~v~Id~~~V~~~l  423 (437)
                      ....=+.|..|..  +...|.|+.+-|.+-+
T Consensus       398 D~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv  428 (616)
T TIGR02903       398 DVYGYALYKKAEALKEEDKVTITADDVKEVV  428 (616)
T ss_pred             HHHHHHHHCCCCCCCCCCCEEEEHHHHHHHH
T ss_conf             4676765304555677774266186777677


No 49 
>KOG0740 consensus
Probab=99.41  E-value=2.2e-13  Score=106.17  Aligned_cols=150  Identities=24%  Similarity=0.340  Sum_probs=93.7

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970787797143410121223431
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN   98 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~D   98 (437)
                      -+-|.+.||+.+--+|-=-..|--.-.+.|.  .+.++||.||||+|||+|++++|.++++-||.++|+++|=. |+|+.
T Consensus       154 di~gl~~~k~~l~e~vi~p~lr~d~F~glr~--p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK-~~Ge~  230 (428)
T KOG0740         154 DIAGLEDAKQSLKEAVILPLLRPDLFLGLRE--PVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK-YVGES  230 (428)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCC--CCCHHHEECCCCCCHHHHHHHHHHHHCCEEEECCHHHHHHH-CCCHH
T ss_conf             7740566899865423220455376523544--53111200589884479999998620665763068886532-46707


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf             013467888765212789985654988886888755553114321100466898898616888854998753554554
Q gi|254780829|r   99 VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI  176 (437)
Q Consensus        99 Ves~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~  176 (437)
                       |-+++-|...|   ....+..||+++++..--+| .+........-.+.-..+........+++.+.+.+++.+...
T Consensus       231 -eK~vralf~vA---r~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~  303 (428)
T KOG0740         231 -EKLVRALFKVA---RSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL  303 (428)
T ss_pred             -HHHHHHHHHHH---HHCCCEEEEECHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHH
T ss_conf             -78999999998---71397089840256788636-875454455565577765404457888707998158883677


No 50 
>CHL00181 cbbX CbbX; Provisional
Probab=99.36  E-value=1e-10  Score=88.86  Aligned_cols=89  Identities=24%  Similarity=0.348  Sum_probs=60.5

Q ss_pred             CHHHHHHHHHHCEECHHHHHHHHHH---HHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-------
Q ss_conf             8899999862030486899999999---998778864086444466566866996798886899999999970-------
Q gi|254780829|r    8 SPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA-------   77 (437)
Q Consensus         8 tP~~i~~~Ld~~VvGQ~~AKk~lav---av~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l-------   77 (437)
                      +=.++-+.||+-.||-+..|+.+--   -+.-.++|...  ++...-..-|.+++||||||||-.||.+|+.+       
T Consensus        13 ~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~--Gl~~~~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~   90 (287)
T CHL00181         13 QIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRKNL--GLVSSSPGLHMSFTGSPGTGKTTVALKMADILYRLGYIK   90 (287)
T ss_pred             CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf             499999999886469699999999999999999999987--999888765388878998679999999999999869955


Q ss_pred             CCCEEEEECCCEEECCCCCCCH
Q ss_conf             7877971434101212234310
Q gi|254780829|r   78 GAPFIKVEVTKFTEIGYVGRNV   99 (437)
Q Consensus        78 ~VPF~~~daT~ftE~gyvG~DV   99 (437)
                      .-.|+-++.+.|. .+|||.-.
T Consensus        91 ~g~vve~~r~dLv-g~yvG~Ta  111 (287)
T CHL00181         91 KGHLITVTRDDLV-GQYIGHTA  111 (287)
T ss_pred             CCEEEEECHHHHC-CCCCCCCH
T ss_conf             8958995358841-63535216


No 51 
>KOG0730 consensus
Probab=99.36  E-value=3e-12  Score=98.81  Aligned_cols=217  Identities=12%  Similarity=0.000  Sum_probs=139.1

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHH
Q ss_conf             48689999999999877886408644446656686699679888689999999997078779714341012122343101
Q gi|254780829|r   21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE  100 (437)
Q Consensus        21 vGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVe  100 (437)
                      -|=...-.++..+|+.-.+--++.... .-..|.|+||.||||||||.|++++|++.++-|+.+.|.+.... |-|+   
T Consensus       187 gg~~~~~~~i~e~v~~pl~~~~~~~s~-g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k-~~gE---  261 (693)
T KOG0730         187 GGLKRQLSVIRELVELPLRHPALFKSI-GIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISK-FPGE---  261 (693)
T ss_pred             CHHHHHHHHHHHHHHHHHCCHHHHHHC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCHHHHHH-CCCC---
T ss_conf             136677888899887430160114431-89999874443899998189999999973722574062899985-2463---


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             34678887652127899-85654988886888755553114321100466898898616888854998753554554433
Q gi|254780829|r  101 QIIRDLVDVAINIVRES-RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF  179 (437)
Q Consensus       101 s~i~~l~~~a~~~~~~a-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~  179 (437)
                       --+.|+.++....+.+ +..+++++++...-++.....    .......++..+++.......+|++...++++.++..
T Consensus       262 -te~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~a  336 (693)
T KOG0730         262 -TESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPA  336 (693)
T ss_pred             -HHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHH
T ss_conf             -17789999999866599807758767623776433324----8889999999998527676746999715885556856


Q ss_pred             CCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             46676663210001101001354322100000102355332788863031011123678887532221002
Q gi|254780829|r  180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD  250 (437)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~  250 (437)
                      ...   ++++..+.-+.+...++......+..............+++.+.+..+++.+..+.++...+..+
T Consensus       337 lRR---gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~  404 (693)
T KOG0730         337 LRR---GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR  404 (693)
T ss_pred             HHC---CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             524---78853157448983358899999986168872556899998734614787999999987776655


No 52 
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.33  E-value=1.6e-10  Score=87.61  Aligned_cols=94  Identities=22%  Similarity=0.451  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHCEECHHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             89999986203048689999999--9998778864086444466566866996798886899999999970787797143
Q gi|254780829|r    9 PREIVSELDRYIIGQQDAKRAVA--IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus         9 P~~i~~~Ld~~VvGQ~~AKk~la--vav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      -+.-.+-||+---|-++.|+.+=  .||+      ++....+    .+=+.|+||||||||-|||.+|+.+|=+|+.++-
T Consensus       313 l~~A~~iLd~dHyGL~~vKeRile~lAv~------~~~~~~k----g~IlclvGpPGvGKTSl~~sIA~al~r~f~risl  382 (784)
T PRK10787        313 LRQAQEILDTDHYGLERVKDRILEYLAVQ------SRVNKIK----GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMAL  382 (784)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHH------HHCCCCC----CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf             99999987654306577999999999999------8624677----8779964699877246999999985898699806


Q ss_pred             CCEEE--------CCCCCCCHHHHHHHHHHHHHH
Q ss_conf             41012--------122343101346788876521
Q gi|254780829|r   87 TKFTE--------IGYVGRNVEQIIRDLVDVAIN  112 (437)
Q Consensus        87 T~ftE--------~gyvG~DVes~i~~l~~~a~~  112 (437)
                      --..-        --|||.=.+.+++-+..+-..
T Consensus       383 GGv~DeaeirGHrrTYvgampGrii~~l~~a~~~  416 (784)
T PRK10787        383 GGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVK  416 (784)
T ss_pred             CCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             8878888825643343443683899999974898


No 53 
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.30  E-value=6.2e-12  Score=96.76  Aligned_cols=114  Identities=22%  Similarity=0.313  Sum_probs=69.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             69967988868999999999707877971434101212234310134678887652127899856549888868887555
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL  135 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~  135 (437)
                      +||.||||||||++|+++|++++.||+.++++++.. .|+|+-..    ++.+.+......+++.++.++++....++..
T Consensus         1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~~-~~~g~~~~----~i~~~f~~a~~~~p~Il~iDe~d~l~~~~~~   75 (131)
T pfam00004         1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVS-KYVGESEK----RLRELFEAAKKLAPCVIFIDEIDALAGSRGS   75 (131)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCC-CCCCHHHH----HHHHHHHHHHHCCCCEEEECHHHHHHCCCCC
T ss_conf             987899999999999999999789853324201222-33450688----8999999999749918983116777516788


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCCC
Q ss_conf             5311432110046689889861688885-49987535545544
Q gi|254780829|r  136 DALVGKTATSNTREVFRKKLRDGEISDK-EIDIEVADTSSDIS  177 (437)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~  177 (437)
                      .   +..........++..+........ .+.+..++....++
T Consensus        76 ~---~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~~ld  115 (131)
T pfam00004        76 G---GDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLD  115 (131)
T ss_pred             C---CCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCC
T ss_conf             8---887513268789999850224688769999759904499


No 54 
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.28  E-value=7.2e-10  Score=83.40  Aligned_cols=104  Identities=16%  Similarity=0.203  Sum_probs=75.3

Q ss_pred             CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf             25543345126886155424678887643468899999999875196899842499999999998404001237246799
Q gi|254780829|r  312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT  391 (437)
Q Consensus       312 lipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~Lrt  391 (437)
                      +|+-+.-|.- +..++..+.++...|-   ++-|+.++.+.-+...-++.|+|+|+..|.+.-..      +-|-|+|..
T Consensus       479 IP~PLlDRME-iI~lsgYt~~EKl~IA---k~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTR------EAGVR~LeR  548 (782)
T COG0466         479 IPAPLLDRME-VIRLSGYTEDEKLEIA---KRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTR------EAGVRNLER  548 (782)
T ss_pred             CCHHHHCCEE-EEEECCCCHHHHHHHH---HHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHH------HHHHHHHHH
T ss_conf             9867843030-5642688869999999---98445689997599823355658999999998767------621038999


Q ss_pred             HHHHHHHHHHCCCCCCCCCE-EEECHHHHHHHHHH
Q ss_conf             99998677621275687768-99859999989999
Q gi|254780829|r  392 VMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGD  425 (437)
Q Consensus       392 I~E~~l~d~~fe~p~~~~~~-v~Id~~~V~~~l~~  425 (437)
                      .+.+++.-+..+.-..+.+. +.||..-+++-|+.
T Consensus       549 ~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~  583 (782)
T COG0466         549 EIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGV  583 (782)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHCC
T ss_conf             99999999999997257566244278899997398


No 55 
>KOG0741 consensus
Probab=99.27  E-value=1.2e-11  Score=94.84  Aligned_cols=192  Identities=17%  Similarity=0.085  Sum_probs=118.0

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCC-EEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q ss_conf             6866996798886899999999970787-7971434101212234310134678887652127899-----856549888
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLAGAP-FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES-----RRDEVREQA  126 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l~VP-F~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a-----~~~i~~~~~  126 (437)
                      -|||||.|||||||||+||-+-++||+- ==++.|.+..-- |||+.-+.+.. |...|....+..     .++|+++++
T Consensus       256 VKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~K-YVGeSE~NvR~-LFaDAEeE~r~~g~~SgLHIIIFDEi  333 (744)
T KOG0741         256 VKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNK-YVGESEENVRK-LFADAEEEQRRLGANSGLHIIIFDEI  333 (744)
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH-HHCCCHHHHHH-HHHHHHHHHHHHCCCCCCEEEEEHHH
T ss_conf             23578877999870189999878745799863475788987-60630788999-98757999984376677259996346


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf             86888755553114321100466898898616888854998753554554433466766632100011010013543221
Q gi|254780829|r  127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK  206 (437)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (437)
                      ++.-..|.-.++ +.+-.+...++++..++.-+--.+..+|.++++.+..+...  .++++.-..+.-..|.-.++.-..
T Consensus       334 DAICKqRGS~~g-~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEAL--LRPGRlEVqmEIsLPDE~gRlQIl  410 (744)
T KOG0741         334 DAICKQRGSMAG-STGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEAL--LRPGRLEVQMEISLPDEKGRLQIL  410 (744)
T ss_pred             HHHHHHCCCCCC-CCCCCHHHHHHHHHHCCCHHHHHCEEEEECCCCHHHHHHHH--CCCCCEEEEEEEECCCCCCCEEEE
T ss_conf             799974488789-88631899999998532287661678994047366678875--588716999998468876727888


Q ss_pred             EEEEEHHHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             0000010235----533278886303101112367888753222100
Q gi|254780829|r  207 KIRMSVQKCY----PELMRDESDRLIDMDTVHRDSIQMVENYGIVFL  249 (437)
Q Consensus       207 ~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~  249 (437)
                      .++-.....+    ..++.+++++++.-++++......-.+.+-|+.
T Consensus       411 ~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~n  457 (744)
T KOG0741         411 KIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMN  457 (744)
T ss_pred             EHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             71445566517877776989999985578626789999988889888


No 56 
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.26  E-value=4.4e-09  Score=78.32  Aligned_cols=46  Identities=28%  Similarity=0.564  Sum_probs=40.0

Q ss_pred             HHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             62030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        16 Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      |=.-|||||+|.+++..|+-|                +.|+||+|||||||++|||++|..|
T Consensus        29 lidqVIGQe~Av~~i~~Aa~q----------------rrhvlliG~PGtGKSmlakam~elL   74 (637)
T PRK13765         29 LIDQVIGQEHAVEVIKKAAKQ----------------RRHVMLIGSPGTGKSMLAKAMAELL   74 (637)
T ss_pred             CCCCCCCHHHHHHHHHHHHHH----------------HCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf             233245719999999999984----------------3738986899987999999999757


No 57 
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.26  E-value=7.2e-11  Score=89.88  Aligned_cols=69  Identities=26%  Similarity=0.469  Sum_probs=57.2

Q ss_pred             HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECC
Q ss_conf             8620304868999999999987788640864444665668669967988868999999999707877971434101212
Q gi|254780829|r   15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG   93 (437)
Q Consensus        15 ~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~g   93 (437)
                      .|++| |||++-|+.|.+++.       ... .|.| .+=.+||.||||.|||-||.=+|.|++|-.-+.+|.-+-=.|
T Consensus         2 ~L~eF-iGQ~~vk~~L~l~I~-------AAk-~R~e-~LDH~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kPg   70 (305)
T TIGR00635         2 LLAEF-IGQEKVKEQLQLFIE-------AAK-MRQE-ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPG   70 (305)
T ss_pred             CCHHC-CCCHHHHHHHHHHHH-------HHH-HCCC-CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHH
T ss_conf             80110-582889999999999-------998-2489-734166317568746789999999838932674067554757


No 58 
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=99.26  E-value=1.8e-10  Score=87.29  Aligned_cols=245  Identities=21%  Similarity=0.284  Sum_probs=145.1

Q ss_pred             HHHHHHCEECHHHHHHH----HHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             99862030486899999----9999987788640864444665668-669967988868999999999707877971434
Q gi|254780829|r   13 VSELDRYIIGQQDAKRA----VAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVT   87 (437)
Q Consensus        13 ~~~Ld~~VvGQ~~AKk~----lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT   87 (437)
                      .+-||+-=-|=++-|..    |||-----.||..- ..++....-+ =+.|+||||||||=|||.+|+-||=+||..+= 
T Consensus       406 ~~~LD~DHYGL~~VK~RIlEYlAV~qllemrrkkk-PkL~~~~~GpqIlClvGPPGVGKTSlg~SIA~ALnRkFvR~Sl-  483 (941)
T TIGR00763       406 KEILDEDHYGLKKVKERILEYLAVQQLLEMRRKKK-PKLRGKMKGPQILCLVGPPGVGKTSLGKSIAKALNRKFVRFSL-  483 (941)
T ss_pred             HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEE-
T ss_conf             99831678888773034135888989998764036-4447788887678720726954222789999996880499952-


Q ss_pred             CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             10121223431013467888765212789985654988886888755553114321100466898898616888854998
Q gi|254780829|r   88 KFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI  167 (437)
Q Consensus        88 ~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i  167 (437)
                           |                  |....|                                                +|
T Consensus       484 -----G------------------G~~DeA------------------------------------------------EI  492 (941)
T TIGR00763       484 -----G------------------GVRDEA------------------------------------------------EI  492 (941)
T ss_pred             -----C------------------CCEEHH------------------------------------------------HC
T ss_conf             -----6------------------722031------------------------------------------------12


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             75355455443346676663210001101001354322100000102355332788863031011123678887532221
Q gi|254780829|r  168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV  247 (437)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  247 (437)
                                                            +.|.++=-||.++-..+...+             +--.+-..
T Consensus       493 --------------------------------------rGHRRTYvGAMPGriiQ~lk~-------------~~t~NPl~  521 (941)
T TIGR00763       493 --------------------------------------RGHRRTYVGAMPGRIIQGLKK-------------AKTKNPLI  521 (941)
T ss_pred             --------------------------------------CCCCCCCCCCCHHHHHHHHHH-------------CCCCCCEE
T ss_conf             --------------------------------------786432034672578999876-------------04158806


Q ss_pred             HCCCCCHHC-CCCCCCCCCCCCCCHHHHHH-HCCCCCCCCC--CCC--CCCCCHHH--HHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             002221001-35766565433210122343-2046652211--246--66420246--6401675422112125543345
Q gi|254780829|r  248 FLDEFDKIV-ARDSGNGIGVSREGVQRDLL-PLVEGSSVST--KYG--SINTDHIL--FIASGAFHVSRPADLLPEIQGR  319 (437)
Q Consensus       248 f~~~~~ki~-~~~~~~~~~~~~~g~~~~~~-~~~e~~~v~~--~~~--~~~~~~~~--~i~~~~~~~~k~~glipE~~GR  319 (437)
                      .+||+||+. .+++..  |++     ..++ .|.++.+..-  +|-  ....+.+.  |||-...     .+.||+.+-=
T Consensus       522 LlDEIDK~~~~~~~~G--DPa-----SALLEvLDPEQN~~F~DHYldvp~DLS~V~CyFi~TAN~-----~d~IP~PLLD  589 (941)
T TIGR00763       522 LLDEIDKIGLKSSFRG--DPA-----SALLEVLDPEQNNAFSDHYLDVPFDLSKVLCYFIATANS-----IDTIPRPLLD  589 (941)
T ss_pred             EEEEEEEECCCCCCCC--CHH-----HHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHEEECCCC-----CCCCCCCCCC
T ss_conf             8620220016788655--637-----888641286436042553002340042002100024475-----7677722137


Q ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             12688615542467888764346889999999987519689984249999999999840400123724679999998677
Q gi|254780829|r  320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED  399 (437)
Q Consensus       320 ~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d  399 (437)
                      ---+..++--+.++...|.   +.=|+.|..+.=+...=+|+|||+||..|.+.-. |     +-|=|.|..-+|+++--
T Consensus       590 RMEvI~lsGY~~~EK~~IA---~~yLiP~~~~~~GL~~~~l~~~d~al~~lI~~Yt-R-----EaGVRNL~r~I~~i~RK  660 (941)
T TIGR00763       590 RMEVIELSGYTEEEKLEIA---KKYLIPKALEDHGLKPDELKISDEALLLLIKYYT-R-----EAGVRNLERQIEKICRK  660 (941)
T ss_pred             CEEEEECCCCCHHHHHHHH---HHCCHHHHHHHHCCCCCCEEECHHHHHHHHHHHH-H-----HHCCHHHHHHHHHHHHH
T ss_conf             4024523888767899999---8547136798708881322126899999998751-3-----20213389999999999


Q ss_pred             HHC
Q ss_conf             621
Q gi|254780829|r  400 ISF  402 (437)
Q Consensus       400 ~~f  402 (437)
                      +.+
T Consensus       661 ~A~  663 (941)
T TIGR00763       661 AAV  663 (941)
T ss_pred             HHH
T ss_conf             999


No 59 
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482   This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=99.24  E-value=3.8e-12  Score=98.19  Aligned_cols=44  Identities=48%  Similarity=0.721  Sum_probs=39.8

Q ss_pred             HCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   18 RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        18 ~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +-|+||++|||+|-+|+          ++      --|+||+||||||||+||+++-+.|
T Consensus       194 ~dv~GQ~~akRAleIAa----------AG------GHNlll~GPPGsGKTmla~r~~giL  237 (505)
T TIGR00368       194 KDVKGQQHAKRALEIAA----------AG------GHNLLLLGPPGSGKTMLASRLQGIL  237 (505)
T ss_pred             CCCCCHHHCCHHHHHHH----------HC------CCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf             22545101102677753----------13------5643767824962689998751057


No 60 
>KOG0739 consensus
Probab=99.22  E-value=7.1e-12  Score=96.38  Aligned_cols=149  Identities=17%  Similarity=0.206  Sum_probs=89.9

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970787797143410121223431
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN   98 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~D   98 (437)
                      -|-|-|-||.+|--||---.|=-++-.+.|  ..=++|||.|||||||.+|||++|-++|--||+++.|.++-- +.|+.
T Consensus       134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR--~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK-WmGES  210 (439)
T KOG0739         134 DVAGLEGAKEALKEAVILPIKFPQLFTGKR--KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WMGES  210 (439)
T ss_pred             HHCCCHHHHHHHHHHEEECCCCHHHHCCCC--CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHH-HHCCH
T ss_conf             301405689998754350002535415887--754257886799975779999987414770687301788998-73217


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHCCC-CCCEEEEEECCCCCC
Q ss_conf             013467888765212789985654988886888755553114321--10046689889861688-885499875355455
Q gi|254780829|r   99 VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTA--TSNTREVFRKKLRDGEI-SDKEIDIEVADTSSD  175 (437)
Q Consensus        99 Ves~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~~~i~i~~~~~~~~  175 (437)
                       |-.   +.+.|..+.+.++.+||+++++.....|     .++.+  ...-...++.++..-.- ++...+...++.+..
T Consensus       211 -EkL---VknLFemARe~kPSIIFiDEiDslcg~r-----~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~  281 (439)
T KOG0739         211 -EKL---VKNLFEMARENKPSIIFIDEIDSLCGSR-----SENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWV  281 (439)
T ss_pred             -HHH---HHHHHHHHHHCCCCEEEEEHHHHHCCCC-----CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH
T ss_conf             -999---9999999873499479863444432688-----7771177777777888764066658886489723788436


Q ss_pred             CCCC
Q ss_conf             4433
Q gi|254780829|r  176 ISNF  179 (437)
Q Consensus       176 ~~~~  179 (437)
                      ++..
T Consensus       282 LDsA  285 (439)
T KOG0739         282 LDSA  285 (439)
T ss_pred             HHHH
T ss_conf             7799


No 61 
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.21  E-value=4e-11  Score=91.55  Aligned_cols=62  Identities=40%  Similarity=0.612  Sum_probs=51.5

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEECCCCC
Q ss_conf             486899999999998778864086444466566866996798886899999999970---7877971434101212234
Q gi|254780829|r   21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEIGYVG   96 (437)
Q Consensus        21 vGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~gyvG   96 (437)
                      .||+..++.+..+++..              .++|+||.||||||||.||+++|+++   +.||+.++++++.+..+..
T Consensus         1 ~~~~~~~~~l~~~~~~~--------------~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~   65 (151)
T cd00009           1 VGQEEAIEALREALELP--------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA   65 (151)
T ss_pred             CCCHHHHHHHHHHHHCC--------------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHH
T ss_conf             98579999999998187--------------998089989999886599999999712137982785477704677775


No 62 
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.17  E-value=2.6e-10  Score=86.25  Aligned_cols=77  Identities=26%  Similarity=0.497  Sum_probs=60.2

Q ss_pred             CCCCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             76768889999986203048689999999999877886408644446656686699679888689999999997078779
Q gi|254780829|r    3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI   82 (437)
Q Consensus         3 ~~~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~   82 (437)
                      ...++-|+    +|++| |||++.|+.+.|.+.---+|..         ..-.+||.||||.|||-||.-+|.+++|.+-
T Consensus        16 ~e~~lRP~----~l~ef-iGQ~~vk~~L~ifI~AAk~r~e---------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k   81 (332)
T COG2255          16 IERSLRPK----TLDEF-IGQEKVKEQLQIFIKAAKKRGE---------ALDHVLLFGPPGLGKTTLAHIIANELGVNLK   81 (332)
T ss_pred             HHHCCCCC----CHHHH-CCHHHHHHHHHHHHHHHHHCCC---------CCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf             43035865----48885-1839999999999999984498---------7674786479987688899999998567737


Q ss_pred             EEECCCEEECC
Q ss_conf             71434101212
Q gi|254780829|r   83 KVEVTKFTEIG   93 (437)
Q Consensus        83 ~~daT~ftE~g   93 (437)
                      +.+|.-+--.|
T Consensus        82 ~tsGp~leK~g   92 (332)
T COG2255          82 ITSGPALEKPG   92 (332)
T ss_pred             ECCCCCCCCHH
T ss_conf             63662015726


No 63 
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.11  E-value=4.1e-09  Score=78.53  Aligned_cols=43  Identities=35%  Similarity=0.578  Sum_probs=38.9

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             30486899999999998778864086444466566--866996798886899999999970
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP--KNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~p--sNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      -||||++||++|-++.-                .|  .|+||.||+|||||.|||+|+..|
T Consensus         9 ~IvGQe~~K~AL~laav----------------~p~~ggvLi~G~~GtgKStlaR~l~~iL   53 (334)
T PRK13407          9 AIVGQEEMKQAMVLTAI----------------DPGIGGVLVFGDRGTGKSTAVRALAALL   53 (334)
T ss_pred             HHCCCHHHHHHHHHHHC----------------CCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             76493999999999772----------------7898608997899865999999999728


No 64 
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.08  E-value=2.1e-09  Score=80.43  Aligned_cols=119  Identities=18%  Similarity=0.245  Sum_probs=74.0

Q ss_pred             CCCCCHHHHHHHHHHCEECHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             676888999998620304868999---99999998778864086444466566866996798886899999999970787
Q gi|254780829|r    4 TFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus         4 ~~~ltP~~i~~~Ld~~VvGQ~~AK---k~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      +.-|.|+.+    |+| |||++--   +.+-.+|-       . .      ...+.+|.||||||||-||+.||+..+.+
T Consensus        15 A~rmRP~~l----de~-vGQ~HLlg~~~~lrr~v~-------~-~------~l~SmIl~GPPG~GKTTlA~liA~~~~~~   75 (436)
T COG2256          15 AERLRPKSL----DEV-VGQEHLLGEGKPLRRAVE-------A-G------HLHSMILWGPPGTGKTTLARLIAGTTNAA   75 (436)
T ss_pred             HHHHCCCCH----HHH-CCHHHHHCCCCHHHHHHH-------C-C------CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             777097778----785-571866189943899996-------4-9------98605777899988889999998761776


Q ss_pred             EEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             79714341012122343101346788876521278998----56549888868887555531143211004668988986
Q gi|254780829|r   81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLR  156 (437)
Q Consensus        81 F~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  156 (437)
                      |...+|++.            .+.++......+.+...    ...|.++                   .-..+..+|...
T Consensus        76 f~~~sAv~~------------gvkdlr~i~e~a~~~~~~gr~tiLflDE-------------------IHRfnK~QQD~l  124 (436)
T COG2256          76 FEALSAVTS------------GVKDLREIIEEARKNRLLGRRTILFLDE-------------------IHRFNKAQQDAL  124 (436)
T ss_pred             EEEECCCCC------------CHHHHHHHHHHHHHHHHCCCCEEEEEEH-------------------HHHCCHHHHHHH
T ss_conf             699515234------------6799999999999987258834998722-------------------533374456551


Q ss_pred             HCCCCCCEEEEEECCC
Q ss_conf             1688885499875355
Q gi|254780829|r  157 DGEISDKEIDIEVADT  172 (437)
Q Consensus       157 ~~~~~~~~i~i~~~~~  172 (437)
                      ++..++..|....+.+
T Consensus       125 Lp~vE~G~iilIGATT  140 (436)
T COG2256         125 LPHVENGTIILIGATT  140 (436)
T ss_pred             HHHHCCCEEEEEECCC
T ss_conf             0332488689996267


No 65 
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.04  E-value=7.3e-10  Score=83.35  Aligned_cols=70  Identities=34%  Similarity=0.544  Sum_probs=61.7

Q ss_pred             CHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             88999998620304868999999999987788640864444665668669967988868999999999707877971434
Q gi|254780829|r    8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT   87 (437)
Q Consensus         8 tP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT   87 (437)
                      ....+...+.++++|+++++..+-.|+.                ...++||.||||||||+|||++|+.++.||+.+.||
T Consensus        14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~----------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t   77 (329)
T COG0714          14 ILGKIRSELEKVVVGDEEVIELALLALL----------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCT   77 (329)
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHH----------------CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf             6666665225655266999999999998----------------599778779898777999999999838981899568


Q ss_pred             CEEECC
Q ss_conf             101212
Q gi|254780829|r   88 KFTEIG   93 (437)
Q Consensus        88 ~ftE~g   93 (437)
                      ..+...
T Consensus        78 ~~l~p~   83 (329)
T COG0714          78 PDLLPS   83 (329)
T ss_pred             CCCCHH
T ss_conf             998888


No 66 
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.04  E-value=5.3e-10  Score=84.26  Aligned_cols=72  Identities=28%  Similarity=0.479  Sum_probs=55.6

Q ss_pred             CCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCCEEE
Q ss_conf             688899999862030486899999999998778864086444466566866996798886899999999970--787797
Q gi|254780829|r    6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA--GAPFIK   83 (437)
Q Consensus         6 ~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l--~VPF~~   83 (437)
                      |+.|+.+-    .=.|||.+|.++..|.|    +=++...     .--++||+.||||||||-||=.+|++|  +|||+.
T Consensus        31 ng~~k~~~----dG~VGQ~~AReAaGvIv----~mik~gk-----~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~   97 (450)
T COG1224          31 NGKAKFIG----DGLVGQEEAREAAGVIV----KMIKQGK-----MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA   97 (450)
T ss_pred             CCCEEECC----CCCCCHHHHHHHHHHHH----HHHHHCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf             89874768----86112498887625999----9997176-----66617999789997688999999998589998215


Q ss_pred             EECCCEE
Q ss_conf             1434101
Q gi|254780829|r   84 VEVTKFT   90 (437)
Q Consensus        84 ~daT~ft   90 (437)
                      .+||++-
T Consensus        98 isgsEiY  104 (450)
T COG1224          98 ISGSEIY  104 (450)
T ss_pred             ECCCEEE
T ss_conf             0133223


No 67 
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=99.01  E-value=1.1e-09  Score=82.22  Aligned_cols=72  Identities=21%  Similarity=0.407  Sum_probs=55.7

Q ss_pred             CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCCEE
Q ss_conf             7688899999862030486899999999998778864086444466566866996798886899999999970--78779
Q gi|254780829|r    5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA--GAPFI   82 (437)
Q Consensus         5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l--~VPF~   82 (437)
                      .+++|+.+-    +=.|||.+|+++..+.|-    =++..     .+--+.+||.||||||||-||-++|++|  ++||.
T Consensus        15 ~~~~~~~~~----~GlVGQ~~AReAagiiv~----mIk~~-----K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~   81 (395)
T pfam06068        15 EDGEARYVS----EGLVGQEKAREAAGVIVE----MIKEG-----KIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFC   81 (395)
T ss_pred             CCCCEEECC----CCCCCHHHHHHHHHHHHH----HHHHC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf             888883645----775454999999899999----99727-----75773899877999888999999999748799734


Q ss_pred             EEECCCE
Q ss_conf             7143410
Q gi|254780829|r   83 KVEVTKF   89 (437)
Q Consensus        83 ~~daT~f   89 (437)
                      ...||+.
T Consensus        82 ~i~gSEv   88 (395)
T pfam06068        82 PISGSEV   88 (395)
T ss_pred             EEEHHEE
T ss_conf             5001112


No 68 
>KOG2028 consensus
Probab=99.00  E-value=8.6e-09  Score=76.42  Aligned_cols=70  Identities=29%  Similarity=0.506  Sum_probs=48.3

Q ss_pred             CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC---E
Q ss_conf             7688899999862030486899999999998778864086444466566866996798886899999999970787---7
Q gi|254780829|r    5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP---F   81 (437)
Q Consensus         5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP---F   81 (437)
                      .-|.|+    .||.| |||+++.-. .--+++-.      .   ..-+|| ++|-||||||||-|||-||.-..-|   |
T Consensus       130 ermRPk----tL~dy-vGQ~hlv~q-~gllrs~i------e---q~~ipS-mIlWGppG~GKTtlArlia~tsk~~Syrf  193 (554)
T KOG2028         130 ERMRPK----TLDDY-VGQSHLVGQ-DGLLRSLI------E---QNRIPS-MILWGPPGTGKTTLARLIASTSKKHSYRF  193 (554)
T ss_pred             HHCCCC----HHHHH-CCHHHHCCC-CHHHHHHH------H---CCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf             541843----68775-053441483-26899998------7---088870-58866998765889999986057774279


Q ss_pred             EEEECCCEE
Q ss_conf             971434101
Q gi|254780829|r   82 IKVEVTKFT   90 (437)
Q Consensus        82 ~~~daT~ft   90 (437)
                      +..+||+-+
T Consensus       194 velSAt~a~  202 (554)
T KOG2028         194 VELSATNAK  202 (554)
T ss_pred             EEEECCCCC
T ss_conf             997414566


No 69 
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.96  E-value=1e-08  Score=75.87  Aligned_cols=48  Identities=21%  Similarity=0.405  Sum_probs=40.2

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||++.+++|.-|+-+    -         .+|.-.|+.||.|||||-.||.+|+.++-
T Consensus        17 dvvgQ~~v~~~L~n~i~~----~---------~i~hayLf~GprG~GKTs~Ari~akalnc   64 (541)
T PRK05563         17 DVVGQEHITTTLKNQIIN----N---------RIAHAYLFCGTRGTGKTSTAKIFAKAVNC   64 (541)
T ss_pred             HHCCCHHHHHHHHHHHHC----C---------CCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             624849999999999984----9---------93204530387995899999999999579


No 70 
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93  E-value=2.4e-08  Score=73.47  Aligned_cols=49  Identities=29%  Similarity=0.377  Sum_probs=41.8

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      -||||+..+++|.-|+-             ..-++...|+.||.|||||-+||.+|+.++-+
T Consensus        18 dvVGQ~~vv~~L~nai~-------------~~ri~HAyLF~GprGtGKTT~ArilAkaLnC~   66 (462)
T PRK06305         18 EILGQDAVVTVLKNALR-------------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ   66 (462)
T ss_pred             HHCCCHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             60490999999999998-------------49976234303899859999999999996799


No 71 
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.91  E-value=1.1e-09  Score=82.14  Aligned_cols=44  Identities=48%  Similarity=0.700  Sum_probs=39.6

Q ss_pred             HCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   18 RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        18 ~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +-|+||++|||++-+|.-                --.|+||+||||||||+||+++.+.|
T Consensus       179 ~DV~GQ~~AKrAleiAAA----------------GgHnLl~~GpPGtGKTmla~Rl~~lL  222 (490)
T COG0606         179 KDVKGQEQAKRALEIAAA----------------GGHNLLLVGPPGTGKTMLASRLPGLL  222 (490)
T ss_pred             HHHCCCHHHHHHHHHHHH----------------CCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf             664384999999999984----------------38867875699886567642310259


No 72 
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.91  E-value=1.1e-08  Score=75.65  Aligned_cols=48  Identities=25%  Similarity=0.448  Sum_probs=39.9

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||+.++++|.-|+.+    -+         .+.-.|+.||.|||||-+|+.+|+.++-
T Consensus        17 dvvGQe~vv~~L~nai~~----~r---------l~HAyLFsGprG~GKTt~ArilAk~LnC   64 (560)
T PRK06647         17 SLEGQDFVVETLKHSIEK----NK---------IANAYIFSGPRGVGKTSSARAFARCLNC   64 (560)
T ss_pred             HHCCCHHHHHHHHHHHHC----CC---------CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             403949999999999974----99---------7743663289987899999999999659


No 73 
>KOG0732 consensus
Probab=98.90  E-value=2e-09  Score=80.57  Aligned_cols=206  Identities=14%  Similarity=0.025  Sum_probs=126.2

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970-----7877971434101212234310134678887652127899856549888
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA-----GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA  126 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l-----~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~  126 (437)
                      .|.++|+-||||||||++|++||..+     .+-|+.-++..--- .|||+.    =+.|...+.-+.+..+.+|+.++|
T Consensus       298 pPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ls-kwvgEa----ERqlrllFeeA~k~qPSIIffdeI  372 (1080)
T KOG0732         298 PPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLS-KWVGEA----ERQLRLLFEEAQKTQPSIIFFDEI  372 (1080)
T ss_pred             CCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHC-CCCCCH----HHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             986323028998725688886665405411020244314844332-544757----788998898874448517730555


Q ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf             86888755553114321100466898898616888854998753554554433466766632100011010013543221
Q gi|254780829|r  127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK  206 (437)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (437)
                      +...-.+....-   --.......++.+|.+......++.+..++++...+++..  +++.+++-.....+....+....
T Consensus       373 dGlapvrSskqE---qih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLR--RPgrfdref~f~lp~~~ar~~Il  447 (1080)
T KOG0732         373 DGLAPVRSSKQE---QIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALR--RPGRFDREFYFPLPDVDARAKIL  447 (1080)
T ss_pred             CCCCCCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHC--CCCCCCEEEEEECCCHHHHHHHH
T ss_conf             664656536677---7445677778876047777786589715678332465442--88666525750378667888999


Q ss_pred             EE-EEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCC
Q ss_conf             00-00010235533278886303101112367888753222100222100135766565433
Q gi|254780829|r  207 KI-RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS  267 (437)
Q Consensus       207 ~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~  267 (437)
                      .+ ...-......-.....++.+.+..+++....+.+++.+++......+.........+..
T Consensus       448 ~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~  509 (1080)
T KOG0732         448 DIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVA  509 (1080)
T ss_pred             HHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCH
T ss_conf             87515777887778999998862340057899888887554304565814222432134501


No 74 
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=98.89  E-value=1.5e-09  Score=81.42  Aligned_cols=43  Identities=42%  Similarity=0.689  Sum_probs=38.6

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             30486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      -|+||+.|||++-+|+-                -.-|+||+||||||||+|||+++..+
T Consensus         4 di~GQ~~akrAl~iAaa----------------G~H~lLl~GpPG~GKTmlA~rl~~iL   46 (207)
T pfam01078         4 DVKGQEQAKRALEIAAA----------------GGHNLLMIGPPGSGKTMLAKRLPGIL   46 (207)
T ss_pred             HHCCCHHHHHHHHHHHC----------------CCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf             86385999999999854----------------78758978899802999997630148


No 75 
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232   Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.84  E-value=1.8e-07  Score=67.85  Aligned_cols=73  Identities=16%  Similarity=0.385  Sum_probs=51.7

Q ss_pred             CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHC-CCCCCC-HHHH
Q ss_conf             25543345126886155424678887643468899999999875196899842499999999998404-001237-2467
Q gi|254780829|r  312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS-TVGDIG-ARRL  389 (437)
Q Consensus       312 lipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t-~~~~~G-AR~L  389 (437)
                      +=|++.-|||+...|..-+.++|..|...    ++++-..         .||.+|...+-+.=..... ...+.| ||--
T Consensus       161 ~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~----m~~~ReY---------~Lt~~A~~~lr~~l~~~~~~~~~~~sNaR~v  227 (261)
T TIGR02881       161 LNPGLRSRFPISIDFPDYTVEELMEIAER----MVKEREY---------KLTEEAKWKLREHLAKVDQLSSREFSNARYV  227 (261)
T ss_pred             CCCCCCCCCCCEEECCCCCHHHHHHHHHH----HHHHHHH---------CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf             07797776650541889988899999999----9864642---------2578899999999741244421005762012


Q ss_pred             HHHHHHHH
Q ss_conf             99999986
Q gi|254780829|r  390 QTVMERVL  397 (437)
Q Consensus       390 rtI~E~~l  397 (437)
                      |.|+|+..
T Consensus       228 RN~iE~AI  235 (261)
T TIGR02881       228 RNIIEKAI  235 (261)
T ss_pred             HHHHHHHH
T ss_conf             42889999


No 76 
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83  E-value=2.3e-08  Score=73.65  Aligned_cols=48  Identities=27%  Similarity=0.452  Sum_probs=40.4

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||+.+++.|.-|+-    +         .-.|.-.|+.||.|||||-+|+.+|+.++-
T Consensus        15 evIGQe~iv~~L~nAi~----~---------~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC   62 (523)
T PRK08451         15 ELIGQESVSKTLSLALD----N---------NRLAHAYLFSGLRGSGKTSSARIFSRALVC   62 (523)
T ss_pred             HCCCCHHHHHHHHHHHH----C---------CCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             40494999999999998----5---------996715875789986889999999999759


No 77 
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82  E-value=3.4e-08  Score=72.55  Aligned_cols=49  Identities=24%  Similarity=0.486  Sum_probs=40.5

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      -||||+++++.|.-|+-    +-+         +|.-.|+.||.|||||.+|+.+|+.++-|
T Consensus        16 dvvGQe~i~~~L~nal~----~~r---------i~HAyLF~GP~GtGKts~ArifAkaLnC~   64 (557)
T PRK07270         16 EMVGQEVVATTLKQAVE----SGK---------ISHAYLFSGPRGTGKTSAAKIFAKAMNCP   64 (557)
T ss_pred             HHCCHHHHHHHHHHHHH----CCC---------CCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             71481999999999998----599---------54044210899868999999999995799


No 78 
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81  E-value=4.1e-08  Score=72.00  Aligned_cols=49  Identities=27%  Similarity=0.498  Sum_probs=41.2

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      -||||+..++.|.-|+.+.             -++.-.|+.||.|||||.+||.+|+.++-.
T Consensus        17 dvvGQ~~v~~~L~nai~~~-------------ri~HAyLF~GprGtGKts~Ari~AkaLnC~   65 (563)
T PRK06674         17 DVVGQEHVTKTLQNALLQE-------------KVSHAYLFSGPRGTGKTSIAKVFAKAVNCE   65 (563)
T ss_pred             HHCCHHHHHHHHHHHHHCC-------------CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             5248099999999999849-------------965034312899868999999999985799


No 79 
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79  E-value=2.8e-07  Score=66.65  Aligned_cols=48  Identities=23%  Similarity=0.422  Sum_probs=41.0

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||+.++++|.-|+.    +-+         .+.-.|+.||.|||||-+||.+|+.++-
T Consensus        19 EVIGQe~Vv~tL~nAI~----~gR---------IaHAYLF~GPRGvGKTT~ARIfAKaLNC   66 (718)
T PRK07133         19 EIKGQDHIIETLKNIIK----SGK---------ISHAYLFSGPHGTGKTSVAKIFANALNC   66 (718)
T ss_pred             HHCCCHHHHHHHHHHHH----CCC---------CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             42285999999999997----499---------7505862389986889999999999679


No 80 
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.79  E-value=6.2e-09  Score=77.34  Aligned_cols=43  Identities=37%  Similarity=0.676  Sum_probs=38.4

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             30486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      -|.||+.||+++-+|.-                ---|+||+||||||||+||+++...+
T Consensus       192 dv~Gq~~akraleIAAA----------------GgHnlLl~GpPG~GKTMlA~rlp~IL  234 (506)
T PRK09862        192 DVVGQEQGKRGLEITAA----------------GGHNLLLIGPPGTGKTMLASRINGLL  234 (506)
T ss_pred             HHCCCHHHHHHHHHHHC----------------CCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf             53697999999999744----------------68865987699945989997751238


No 81 
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77  E-value=1.3e-07  Score=68.68  Aligned_cols=48  Identities=29%  Similarity=0.535  Sum_probs=40.6

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||+.+++.|.-|+-    +-+         .|...|+.||.|||||-+|+.+|+.++-
T Consensus        17 eIIGQe~iv~~L~nAI~----~~R---------iaHAYLFsGPrGvGKTTlArifAkaLnC   64 (613)
T PRK05896         17 QIIGQELIKKILVNAIL----NNK---------LTHAYIFSGPRGIGKTSIAKIFAKAINC   64 (613)
T ss_pred             HHCCCHHHHHHHHHHHH----CCC---------CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             52382999999999998----499---------7622775589984889999999999669


No 82 
>PRK04195 replication factor C large subunit; Provisional
Probab=98.75  E-value=2.6e-08  Score=73.25  Aligned_cols=62  Identities=29%  Similarity=0.528  Sum_probs=49.4

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEE
Q ss_conf             04868999999999987788640864444665668669967988868999999999707877971434101
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT   90 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ft   90 (437)
                      ||||+.+++.|.--+.+ |.        +....++.+||.||||||||-+|++||+++|...+-..||...
T Consensus        16 ivg~~~~v~~l~~Wl~~-w~--------~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R   77 (403)
T PRK04195         16 VVGNEKAKKQLREWIES-WL--------KGKPPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR   77 (403)
T ss_pred             HHCCHHHHHHHHHHHHH-HH--------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf             85889999999999999-87--------3996574699889399879999999999849985997710114


No 83 
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.75  E-value=4.5e-06  Score=58.75  Aligned_cols=66  Identities=21%  Similarity=0.355  Sum_probs=50.8

Q ss_pred             HHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECCCEEE
Q ss_conf             2030486899999999998778864086444466566866996798886899999999970-----78779714341012
Q gi|254780829|r   17 DRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA-----GAPFIKVEVTKFTE   91 (437)
Q Consensus        17 d~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l-----~VPF~~~daT~ftE   91 (437)
                      =..++|-|+-.+.++-++....+          .-.|+|+++.||||||||..+|.+.+.+     ++-|+.++|..+.-
T Consensus        29 P~~l~~Re~Ei~~l~~~l~~~l~----------g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t   98 (394)
T PRK00411         29 PENLPHREEQIEELAFALRPALR----------GSRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRT   98 (394)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHC----------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             99898859999999999999975----------99998479988999989999999999999746896599996966898


Q ss_pred             C
Q ss_conf             1
Q gi|254780829|r   92 I   92 (437)
Q Consensus        92 ~   92 (437)
                      .
T Consensus        99 ~   99 (394)
T PRK00411         99 R   99 (394)
T ss_pred             H
T ss_conf             9


No 84 
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.75  E-value=1.6e-08  Score=74.60  Aligned_cols=48  Identities=31%  Similarity=0.609  Sum_probs=42.6

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCEEEECCCCCCHHHHHHHHHHHH-------CCCEE
Q ss_conf             30486899999999998778864086444466566--866996798886899999999970-------78779
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP--KNILLVGPTGVGKTAISRRLARLA-------GAPFI   82 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~p--sNiLLiGPtGtGKTlLAktLA~~l-------~VPF~   82 (437)
                      .||||+++|++|-.+.                +.|  .|+|+.||+|||||.++|+||..+       +-||-
T Consensus        13 aIvGQe~~k~aLll~a----------------v~p~iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~   69 (347)
T CHL00081         13 AIVGQEEMKLALLLNV----------------IDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFN   69 (347)
T ss_pred             HHCCHHHHHHHHHHHH----------------CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf             6538499999999982----------------57887869987899874999999999857874220688767


No 85 
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763    This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.74  E-value=1.6e-07  Score=68.10  Aligned_cols=48  Identities=29%  Similarity=0.562  Sum_probs=41.5

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             0486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      |||||.-.++|+-|+-    .-+         +.--.||.||=|||||=+||=+|+.+|=+
T Consensus        16 ~~GQ~~iv~tL~NAi~----~~r---------i~HAYLF~GpRGtGKTS~ARIfAKaLNC~   63 (363)
T TIGR02397        16 VIGQEHIVKTLKNAIK----NGR---------IAHAYLFSGPRGTGKTSIARIFAKALNCQ   63 (363)
T ss_pred             CCCCHHHHHHHHHHHH----HCC---------CCCEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf             2351799999999997----189---------66234502859976355899999986588


No 86 
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69  E-value=8e-07  Score=63.65  Aligned_cols=48  Identities=31%  Similarity=0.504  Sum_probs=41.0

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||+..++.|.-|+.+.             .++.-.||.||-|||||-+||.||+.||-
T Consensus        16 eviGQe~v~~~L~~Ai~~g-------------ri~HAYLFsGprG~GKTt~ARilAkaLNC   63 (775)
T PRK07764         16 EVVGQEHVTEPLSTALDSG-------------RINHAYLFSGPRGCGKTSSARILARSLNC   63 (775)
T ss_pred             HHCCCHHHHHHHHHHHHCC-------------CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             6228599999999999819-------------97633762378887888999999999668


No 87 
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.68  E-value=4.4e-08  Score=71.84  Aligned_cols=47  Identities=32%  Similarity=0.497  Sum_probs=38.0

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             0486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      ||||+++++.|.-++-+             .-.| ++||.||||||||-+|+++|+++.-+
T Consensus        17 vvGq~~i~~~L~~~~~~-------------~~~p-hlLf~GPpG~GKTt~A~~lA~~l~~~   63 (337)
T PRK12402         17 ILGQESVVDHLSALAAS-------------GNLP-HLVVYGPSGSGKTAAVRALARELYGD   63 (337)
T ss_pred             HCCCHHHHHHHHHHHHC-------------CCCC-EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             03979999999999977-------------9987-69888929848999999999996799


No 88 
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65  E-value=2.1e-07  Score=67.38  Aligned_cols=48  Identities=35%  Similarity=0.533  Sum_probs=40.3

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||+..+++|.-|+-    .-+         +..-.||.||-|||||-+||-+|+.+|-
T Consensus        17 e~vGQ~~v~~~L~nal~----~~r---------l~haylf~G~rGvGKTt~Ari~Ak~lNC   64 (704)
T PRK08691         17 DLVGQEHVVKALQNALD----EGR---------LHHAYLLTGTRGVGKTTIARILAKSLNC   64 (704)
T ss_pred             HHCCCHHHHHHHHHHHH----HCC---------CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             64186999999999998----199---------7523750278987888999999999679


No 89 
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65  E-value=1.8e-07  Score=67.91  Aligned_cols=49  Identities=33%  Similarity=0.526  Sum_probs=41.0

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      -||||+.-.++|.-|+-+    .+         +..-.||.||-|||||-+||-+||.+|-.
T Consensus        17 e~vGQ~~v~~~l~nal~~----~r---------l~haylf~G~rGvGKTt~aRi~Ak~lnC~   65 (816)
T PRK07003         17 SLVGQEHVVRALTHALDG----GR---------LHHAYLFTGTRGVGKTTLSRIFAKALNCE   65 (816)
T ss_pred             HHCCCHHHHHHHHHHHHC----CC---------CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             623849999999999970----98---------63147511789888889999999986789


No 90 
>KOG2004 consensus
Probab=98.61  E-value=1.1e-06  Score=62.67  Aligned_cols=53  Identities=34%  Similarity=0.646  Sum_probs=39.5

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC--------CCCCCCHHHHHHHHHHHH
Q ss_conf             866996798886899999999970787797143410121--------223431013467888765
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--------GYVGRNVEQIIRDLVDVA  110 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~--------gyvG~DVes~i~~l~~~a  110 (437)
                      +=+-|+||||+|||=+||.+|+-+|=-||..+---.|.+        -|||    +|..|+.++-
T Consensus       439 kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVG----AMPGkiIq~L  499 (906)
T KOG2004         439 KILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVG----AMPGKIIQCL  499 (906)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCEEEEC----CCCHHHHHHH
T ss_conf             379986899877321899999984874699853663427764254211001----4884899999


No 91 
>KOG0742 consensus
Probab=98.60  E-value=3.3e-07  Score=66.11  Aligned_cols=110  Identities=21%  Similarity=0.237  Sum_probs=69.5

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf             866996798886899999999970787797143410121223431013467888765212789-9856549888868887
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEE  132 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~-a~~~i~~~~~~~~~~~  132 (437)
                      .||||.||||||||+.||-||+..+.-+...-+-..-.+|   .+.-+-|++|.   +|..+. ..-..|+++++...-+
T Consensus       385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG---~qaVTkiH~lF---DWakkS~rGLllFIDEADAFLce  458 (630)
T KOG0742         385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG---AQAVTKIHKLF---DWAKKSRRGLLLFIDEADAFLCE  458 (630)
T ss_pred             HHEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCCCCCH---HHHHHHHHHHH---HHHHHCCCCEEEEEHHHHHHHHH
T ss_conf             4003247999860499999988528741001378755521---78899999987---88751566449986116789987


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEE-EEECCCCC
Q ss_conf             5555311432110046689889861688885499-87535545
Q gi|254780829|r  133 RILDALVGKTATSNTREVFRKKLRDGEISDKEID-IEVADTSS  174 (437)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~-i~~~~~~~  174 (437)
                      |-.     ...++.....+...|-...-..+.+. +..++.+.
T Consensus       459 Rnk-----tymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg  496 (630)
T KOG0742         459 RNK-----TYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG  496 (630)
T ss_pred             HCC-----CCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf             520-----10258899999889876256554268996058832


No 92 
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.59  E-value=5e-08  Score=71.44  Aligned_cols=37  Identities=35%  Similarity=0.497  Sum_probs=34.1

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf             6699679888689999999997078779714341012
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE   91 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE   91 (437)
                      ||||.||||||||.||+++|+.++.||+.+.+|+-++
T Consensus         1 hVLL~GppG~GKT~l~~~lA~~~~~~~~~i~~~~~~~   37 (131)
T pfam07726         1 HVLLEGVPGLAKTLLARTLARSLGLDFRRIQFTPDLL   37 (131)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             9878989987699999999999599816888337767


No 93 
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58  E-value=8.1e-07  Score=63.62  Aligned_cols=125  Identities=17%  Similarity=0.194  Sum_probs=72.4

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC------------------
Q ss_conf             30486899999999998778864086444466566866996798886899999999970787------------------
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP------------------   80 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP------------------   80 (437)
                      -+|||+...++|.-|+-             ..-++...||.||.|||||-.||-+|+.++-.                  
T Consensus        22 ~liGQ~~~~~~l~n~i~-------------~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c   88 (507)
T PRK06645         22 ELQGQEVLVKVLSYTIL-------------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNC   88 (507)
T ss_pred             HHCCCHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
T ss_conf             62393999999999997-------------39966347745879978899999999996799988889988888887678


Q ss_pred             ----------EEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             ----------7971434101212234310134678887652127899856549888868887555531143211004668
Q gi|254780829|r   81 ----------FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV  150 (437)
Q Consensus        81 ----------F~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (437)
                                .+-.||.+-|  |     |+.+. .+.+.+.+.+-.+...+++   ++.+          |.-..+..+.
T Consensus        89 ~~i~~~~~~dv~EiDaas~~--g-----v~~ir-~l~~~~~~~p~~~~~kv~i---idE~----------hmls~~a~na  147 (507)
T PRK06645         89 ISFNNHNHPDIIEIDAASKT--S-----VDDIR-RIIESAEYKPLQGKHKIFI---IDEV----------HMLSKGAFNA  147 (507)
T ss_pred             HHHHCCCCCCEEEEECCCCC--C-----HHHHH-HHHHHCCCCCCCCCEEEEE---ECCH----------HHCCHHHHHH
T ss_conf             99865899985996378888--8-----89999-9986355178767435899---5214----------2248999999


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf             98898616888854998753554554433
Q gi|254780829|r  151 FRKKLRDGEISDKEIDIEVADTSSDISNF  179 (437)
Q Consensus       151 ~~~~l~~~~~~~~~i~i~~~~~~~~~~~~  179 (437)
                      ++..|..+......  +..+......+..
T Consensus       148 llktlEepp~~~~F--i~atte~~kip~t  174 (507)
T PRK06645        148 LLKTLEEPPPHIIF--IFATTEVQKIPAT  174 (507)
T ss_pred             HHHHHHCCCCCEEE--EEECCCHHHCCHH
T ss_conf             99974278644389--9974853648378


No 94 
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57  E-value=3.5e-07  Score=65.95  Aligned_cols=48  Identities=35%  Similarity=0.548  Sum_probs=40.6

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||+...++|+-|+.+             ..+..-.||.||-|||||-+||-+|+.+|-
T Consensus        17 ~~vGQ~~v~~~l~na~~~-------------~r~~haylf~G~rGvGKTt~ari~Ak~lnc   64 (721)
T PRK12323         17 TLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNC   64 (721)
T ss_pred             HHCCCHHHHHHHHHHHHC-------------CCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             532859999999999971-------------997544750279988898999999999768


No 95 
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53  E-value=3.4e-06  Score=59.60  Aligned_cols=49  Identities=33%  Similarity=0.399  Sum_probs=40.8

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      -||||+...++|.-|+.+          .   .+..-.||.||-|||||-+||-+|+.+|-.
T Consensus        17 ~~vGQ~~v~~~l~na~~~----------~---r~~haylf~G~rG~GKtt~ari~ak~lnc~   65 (643)
T PRK07994         17 DVVGQEHVLTALANGLSL----------G---RIHHAYLFSGTRGVGKTSIARLLAKGLNCE   65 (643)
T ss_pred             HHCCCHHHHHHHHHHHHH----------C---CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             653879999999999982----------9---866348745899888889999999996799


No 96 
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51  E-value=7.2e-07  Score=63.96  Aligned_cols=48  Identities=31%  Similarity=0.435  Sum_probs=40.3

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||+...++|.-|+-    .-         .+..-.||.||-|||||-+||-+|+.+|-
T Consensus        17 e~vGQ~~v~~~L~nal~----~~---------rl~haylf~G~rGvGKTt~ARi~Ak~lNC   64 (717)
T PRK08853         17 EVVGQSHVLTALENALA----HN---------RLHHAYLFSGTRGVGKTTIGRLFAKGLNC   64 (717)
T ss_pred             HHCCCHHHHHHHHHHHH----CC---------CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             51385999999999997----09---------97405761088988898999999998678


No 97 
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.47  E-value=0.00011  Score=49.70  Aligned_cols=74  Identities=19%  Similarity=0.291  Sum_probs=54.3

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC-----EEEEECCCEEECCC
Q ss_conf             0486899999999998778864086444466566866996798886899999999970787-----79714341012122
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP-----FIKVEVTKFTEIGY   94 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP-----F~~~daT~ftE~gy   94 (437)
                      +.+-|+=...++..+..-+          ..-.|.|++++||||||||..+|-+++++.-+     ++++.|..+.... 
T Consensus        19 l~~Re~ei~~l~~~l~~~~----------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~-   87 (366)
T COG1474          19 LPHREEEINQLASFLAPAL----------RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY-   87 (366)
T ss_pred             CCCHHHHHHHHHHHHHHHH----------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHH-
T ss_conf             1034889999999999985----------58998607998899987328999999999733156757999513078787-


Q ss_pred             CCCCHHHHHHHHHHHH
Q ss_conf             3431013467888765
Q gi|254780829|r   95 VGRNVEQIIRDLVDVA  110 (437)
Q Consensus        95 vG~DVes~i~~l~~~a  110 (437)
                            .+..+++...
T Consensus        88 ------~i~~~i~~~~   97 (366)
T COG1474          88 ------QVLSKILNKL   97 (366)
T ss_pred             ------HHHHHHHHHH
T ss_conf             ------9999999982


No 98 
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.45  E-value=1.3e-07  Score=68.79  Aligned_cols=38  Identities=39%  Similarity=0.642  Sum_probs=33.9

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCEEEC
Q ss_conf             66996798886899999999970-787797143410121
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLA-GAPFIKVEVTKFTEI   92 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l-~VPF~~~daT~ftE~   92 (437)
                      ||||+||||||||.||+.+|+.+ +.|++.+.++..+..
T Consensus         1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~   39 (139)
T pfam07728         1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTE   39 (139)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCH
T ss_conf             989998997569999999999807983111214655652


No 99 
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.43  E-value=5.2e-07  Score=64.85  Aligned_cols=49  Identities=33%  Similarity=0.555  Sum_probs=37.7

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHH
Q ss_conf             6686699679888689999999997078779714341012122343101346
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII  103 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i  103 (437)
                      .++||.|+|++|||||-++|.||+.++.||+-.|  .+.|. ..|..+..+.
T Consensus         3 ~kknI~LiG~mGsGKstvgk~LA~~l~~~fiD~D--~~Ie~-~~g~si~~If   51 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD--QEIEK-RTGADIGWVF   51 (172)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH--HHHHH-HHCCCHHHHH
T ss_conf             8882898899999889999999999699968780--99999-9798999999


No 100
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.39  E-value=9.6e-07  Score=63.13  Aligned_cols=49  Identities=31%  Similarity=0.515  Sum_probs=38.6

Q ss_pred             HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             8620304868999999999987788640864444665668669967988868999999999707
Q gi|254780829|r   15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        15 ~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      .||+ |+||++++..|.-.+-+             .-. .|+|+.||||||||-+|+++|+++.
T Consensus        14 ~l~d-i~g~~~~~~~L~~~i~~-------------~~~-phlLf~GppG~GKTt~a~~la~~l~   62 (318)
T PRK00440         14 SLDE-VVGQEEIVERLKSFVKE-------------KNM-PHLLFAGPPGTGKTTAALALARELY   62 (318)
T ss_pred             CHHH-HCCCHHHHHHHHHHHHC-------------CCC-CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             8999-41969999999999987-------------998-6698889599889999999999976


No 101
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487   ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent  molecular chaperone and is the regulatory subunit of the ClpXP protease .   ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates .    The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA .  ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.38  E-value=6e-08  Score=70.95  Aligned_cols=82  Identities=34%  Similarity=0.555  Sum_probs=63.2

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCC--CCCCCCHHHHHHHCCCCCCCCC-----------
Q ss_conf             278886303101112367888753222100222100135766565--4332101223432046652211-----------
Q gi|254780829|r  220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST-----------  286 (437)
Q Consensus       220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~--~~~~~g~~~~~~~~~e~~~v~~-----------  286 (437)
                      ..+.+.|++....+    ..-...-||+||||+|||+.++.+.++  |+|+||+|+.++.++||+..++           
T Consensus       198 VENIL~~Llq~ad~----DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSGEGVQQALLKi~EGTvA~vPPqGGRKHP~~  273 (452)
T TIGR00382       198 VENILLKLLQAADY----DVEKAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQ  273 (452)
T ss_pred             HHHHHHHHHHHCCC----CHHHHCCCEEEEECCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCC
T ss_conf             88999999874145----52452785089842231012157780112217554999999876032343175448868865


Q ss_pred             CCCCCCCCHHHHHHCCCCC
Q ss_conf             2466642024664016754
Q gi|254780829|r  287 KYGSINTDHILFIASGAFH  305 (437)
Q Consensus       287 ~~~~~~~~~~~~i~~~~~~  305 (437)
                      ...++.|..|+|||.|||.
T Consensus       274 ~~iqiDTs~ILFICGGAF~  292 (452)
T TIGR00382       274 EFIQIDTSNILFICGGAFV  292 (452)
T ss_pred             CEEEECCCCEEEEECCHHH
T ss_conf             7688647640011054344


No 102
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.36  E-value=1.4e-05  Score=55.60  Aligned_cols=90  Identities=21%  Similarity=0.285  Sum_probs=56.4

Q ss_pred             CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCC-HHHHHH
Q ss_conf             5543345126886155424678887643468899999999875196899842499999999998404001237-246799
Q gi|254780829|r  313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG-ARRLQT  391 (437)
Q Consensus       313 ipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~G-AR~Lrt  391 (437)
                      .+.+--|+...+.|.||+.++...=+.       -+.+.  +..+-...||++|++.|.+.+-         | .|....
T Consensus       176 ~~~l~qRI~~~~~L~pl~~eet~~YI~-------~RL~~--AG~~~~~~Ft~~A~~~I~~~S~---------G~PR~IN~  237 (269)
T TIGR03015       176 LQQLRQRIIASCHLGPLDREETREYIE-------HRLER--AGNRDAPVFSEGAFDAIHRFSR---------GIPRLINI  237 (269)
T ss_pred             HHHHHHCEEEEEEECCCCHHHHHHHHH-------HHHHH--CCCCCCCCCCHHHHHHHHHHCC---------CCHHHHHH
T ss_conf             254555076799847999899999999-------99986--6999999859999999999869---------90089999


Q ss_pred             HHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHH
Q ss_conf             99998677621275687768998599999899999
Q gi|254780829|r  392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF  426 (437)
Q Consensus       392 I~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~l  426 (437)
                      +..+.|...    -..+-  -.||++.|++.+..+
T Consensus       238 Lc~~aLl~a----~~~~~--~~I~~~~v~~~~~el  266 (269)
T TIGR03015       238 LCDRLLLSA----FLEEK--REIGGEEVREVIAEI  266 (269)
T ss_pred             HHHHHHHHH----HHHCC--CCCCHHHHHHHHHHH
T ss_conf             999999999----99488--867999999999976


No 103
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.34  E-value=7.2e-07  Score=63.95  Aligned_cols=36  Identities=42%  Similarity=0.630  Sum_probs=32.1

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             566866996798886899999999970787797143
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      +.++||.|+|++|||||-++|.||+.++.||+-.|.
T Consensus         2 ~~~~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D~   37 (175)
T PRK00131          2 LKGPNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTDH   37 (175)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCH
T ss_conf             999808988899999899999999995969023988


No 104
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34  E-value=1.9e-05  Score=54.75  Aligned_cols=48  Identities=33%  Similarity=0.502  Sum_probs=40.7

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||+...++|+-|+-    ..         .+..-.||.|+-|||||-+||-+||.||-
T Consensus        17 ~~~gq~~~~~~l~~~~~----~~---------~~~~a~lf~g~rg~gkt~~ar~~a~~lnc   64 (663)
T PRK08770         17 ELVGQEHVVRALSNALD----SG---------RVHHAFLFTGTRGVGKTTIARIFAKSLNC   64 (663)
T ss_pred             HHCCCHHHHHHHHHHHH----CC---------CCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             52285999999999997----09---------97404762279988888999999998678


No 105
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=98.34  E-value=6.8e-06  Score=57.61  Aligned_cols=48  Identities=35%  Similarity=0.544  Sum_probs=40.3

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||+...++|+-|+-+    -+         +..-.||.||-|||||-+||-+||.+|-
T Consensus        17 ~~~gq~~~~~~l~~~~~~----~~---------~~~a~l~~g~rg~gkt~~ar~~ak~lnc   64 (705)
T PRK05648         17 EMVGQTHVLKALINALDN----QR---------LHHAYLFTGTRGVGKTTIARIIAKCLNC   64 (705)
T ss_pred             HHCCHHHHHHHHHHHHHC----CC---------CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             632819999999999970----98---------6304650078988898999999998677


No 106
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=98.33  E-value=2.4e-06  Score=60.57  Aligned_cols=77  Identities=21%  Similarity=0.347  Sum_probs=57.1

Q ss_pred             CCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             68889999986203048689999999999877886408644446656686699679888689999999997078779714
Q gi|254780829|r    6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE   85 (437)
Q Consensus         6 ~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~d   85 (437)
                      ......+..-|++.+.||.-|++++--||..|+.-   +...    -|-=+-|-|||||||+++++-||+-+   |-.-.
T Consensus        13 ~~~~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~---~~p~----KpLVlSfHG~tGtGKn~vs~liA~~L---y~~G~   82 (127)
T pfam06309        13 SFNYHGLERDLARRLFGQHLVKQLVVRSVKGHWEN---PKPR----KPLVLSFHGWTGTGKNFVAEIIADNL---YRDGL   82 (127)
T ss_pred             CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC---CCCC----CCEEEEECCCCCCCHHHHHHHHHHHH---HHCCC
T ss_conf             88779999999875347798999999999999748---9999----97488701899987989999999998---75434


Q ss_pred             CCCEEEC
Q ss_conf             3410121
Q gi|254780829|r   86 VTKFTEI   92 (437)
Q Consensus        86 aT~ftE~   92 (437)
                      -|+|.-.
T Consensus        83 ~S~~Vh~   89 (127)
T pfam06309        83 RSPYVHH   89 (127)
T ss_pred             CCCCEEE
T ss_conf             7875688


No 107
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.33  E-value=2.7e-05  Score=53.69  Aligned_cols=66  Identities=17%  Similarity=0.302  Sum_probs=46.1

Q ss_pred             CCCCCCCCC--EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             255433451--268861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r  312 LLPEIQGRF--PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL  389 (437)
Q Consensus       312 lipE~~GR~--p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L  389 (437)
                      +.|.+..|+  -..+.+++++.+++..||..           .+...|+.  .++++++.|++.--.        -.|.|
T Consensus       147 ~~~dL~SRL~~g~~~~i~~pdd~~~~~iL~~-----------~a~~r~l~--l~~~v~~yl~~r~~R--------~~r~L  205 (219)
T pfam00308       147 FEDRLRSRFEWGLIIAIEPPDLETRLAILRK-----------KAEEENIN--IPNEVLNFIAQRITD--------NVREL  205 (219)
T ss_pred             CCHHHHHHHHCCEEEECCCCCHHHHHHHHHH-----------HHHHCCCC--CCHHHHHHHHHHCCC--------CHHHH
T ss_conf             3277999986875661169999999999999-----------99984999--999999999984279--------89999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999867
Q gi|254780829|r  390 QTVMERVLE  398 (437)
Q Consensus       390 rtI~E~~l~  398 (437)
                      -++++++-.
T Consensus       206 ~~~L~~L~~  214 (219)
T pfam00308       206 EGALNRLLA  214 (219)
T ss_pred             HHHHHHHHH
T ss_conf             999999998


No 108
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.28  E-value=1.4e-06  Score=62.03  Aligned_cols=58  Identities=29%  Similarity=0.555  Sum_probs=40.7

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6699679888689999999997078779714341012122343101346788876521278
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR  115 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~  115 (437)
                      ||.|+|++|||||-++|.||+.++.||+-.|  .+.|. +.|..+..+....-..+-.+.|
T Consensus         1 nI~LiG~~G~GKstigk~la~~l~~~fiD~D--~~Ie~-~~g~si~eif~~~Ge~~FR~~E   58 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQ-RAGMSIPEIFAEEGEEGFRELE   58 (154)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEECC--HHHHH-HHCCCHHHHHHHCCHHHHHHHH
T ss_conf             9899889999889999999999798979685--99999-9499999999874938789999


No 109
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251   This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=98.28  E-value=1.8e-06  Score=61.29  Aligned_cols=203  Identities=25%  Similarity=0.360  Sum_probs=119.8

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970----------78779714341
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA----------GAPFIKVEVTK   88 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l----------~VPF~~~daT~   88 (437)
                      =|||||+--|+|-=|+|         .++     |-.|+++||||+|||==||-+=+++          ++-|+=+||||
T Consensus        66 EIiGQe~GI~ALKAALC---------GPN-----PQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDATT  131 (532)
T TIGR02902        66 EIIGQEEGIKALKAALC---------GPN-----PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDATT  131 (532)
T ss_pred             CCCCCHHHHHHHHHHCC---------CCC-----CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf             25673556899998606---------868-----9638987886961789999999986508753789886689850510


Q ss_pred             EE--ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf             01--2122343101346788876521278998565498888688875555311432110046689889861688885499
Q gi|254780829|r   89 FT--EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID  166 (437)
Q Consensus        89 ft--E~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  166 (437)
                      ..  |=|                           |             +                               
T Consensus       132 ~RFDERG---------------------------I-------------A-------------------------------  140 (532)
T TIGR02902       132 ARFDERG---------------------------I-------------A-------------------------------  140 (532)
T ss_pred             CCCCCCC---------------------------C-------------C-------------------------------
T ss_conf             3602146---------------------------6-------------6-------------------------------


Q ss_pred             EEECCCCCCCCCCCCCC-CCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             87535545544334667-66632100011010013543221000001023553327888630310111236788875322
Q gi|254780829|r  167 IEVADTSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG  245 (437)
Q Consensus       167 i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  245 (437)
                             +++.+..+.+ --+.|..++...+.+..|-.                                    .-.|-|
T Consensus       141 -------DPLIGSVHDPIYQGAGplG~AGIPQPK~GAV------------------------------------T~AHGG  177 (532)
T TIGR02902       141 -------DPLIGSVHDPIYQGAGPLGVAGIPQPKPGAV------------------------------------TKAHGG  177 (532)
T ss_pred             -------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------------------------CCCCCC
T ss_conf             -------6567761585333765457885575877763------------------------------------202586


Q ss_pred             HHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC---CCCCCCCCHHHHH----HCCCCCCCCCCC-------
Q ss_conf             21002221001357665654332101223432046652211---2466642024664----016754221121-------
Q gi|254780829|r  246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST---KYGSINTDHILFI----ASGAFHVSRPAD-------  311 (437)
Q Consensus       246 ~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~---~~~~~~~~~~~~i----~~~~~~~~k~~g-------  311 (437)
                      +.|+||+-....-.+            .+++...|.-+|..   +|-+..+..-.+|    ..|-+.|..--|       
T Consensus       178 vLFIDEIGELHP~~M------------NKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~Pe  245 (532)
T TIGR02902       178 VLFIDEIGELHPVQM------------NKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPE  245 (532)
T ss_pred             EEEECCCCCCCHHHH------------HHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCC
T ss_conf             551212466582435------------31411330222000012358777865427899720678734012133369877


Q ss_pred             -CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHH
Q ss_conf             -2554334512688615542467888764346889999999987519689984249999999999
Q gi|254780829|r  312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV  375 (437)
Q Consensus       312 -lipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~  375 (437)
                       ++|=+=-|= +=+=|.+|..|++.+|-..             +.+.|.+....+|++-|++.|.
T Consensus       246 EIpPAlRSRC-~EIFFR~L~~EEi~~iAk~-------------AaeKIg~~l~~~Al~~I~~Ya~  296 (532)
T TIGR02902       246 EIPPALRSRC-VEIFFRPLLKEEIKEIAKN-------------AAEKIGLNLEKEALDLIAKYAS  296 (532)
T ss_pred             CCCHHHHCCC-EEEEECCCCHHHHHHHHHH-------------HHHHCCCCCCHHHHHHHHHHHC
T ss_conf             6783465052-2677168887899999876-------------5653046547547999998740


No 110
>PRK13946 shikimate kinase; Provisional
Probab=98.27  E-value=1e-06  Score=62.95  Aligned_cols=40  Identities=38%  Similarity=0.764  Sum_probs=35.4

Q ss_pred             CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             4466566866996798886899999999970787797143
Q gi|254780829|r   47 LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        47 ~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      ....+-++||.|+|++|||||-+.|.||+.++.||+-.|.
T Consensus        14 ~~~~l~kknIvLIG~mGsGKStvGk~LA~~L~~~fiD~D~   53 (195)
T PRK13946         14 IRAALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT   53 (195)
T ss_pred             HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf             9998589958998999998899999999997979898859


No 111
>KOG0735 consensus
Probab=98.26  E-value=3.3e-06  Score=59.65  Aligned_cols=76  Identities=25%  Similarity=0.203  Sum_probs=60.4

Q ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHHH----CCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6566866996798886899999999970----787797143410121223431013467888765212789985654988
Q gi|254780829|r   50 ELMPKNILLVGPTGVGKTAISRRLARLA----GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ  125 (437)
Q Consensus        50 e~~psNiLLiGPtGtGKTlLAktLA~~l----~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~  125 (437)
                      -+.+-||||-||+|||||-|+|++++++    ...|.++||+++-..-     ++.+-..+...+.....-+|..|+-++
T Consensus       428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~-----~e~iQk~l~~vfse~~~~~PSiIvLDd  502 (952)
T KOG0735         428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS-----LEKIQKFLNNVFSEALWYAPSIIVLDD  502 (952)
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHCCCHH-----HHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             334661898679987776999999987515650699997522104204-----899999999999998863780899705


Q ss_pred             HHHHH
Q ss_conf             88688
Q gi|254780829|r  126 ASINA  130 (437)
Q Consensus       126 ~~~~~  130 (437)
                      .+..+
T Consensus       503 ld~l~  507 (952)
T KOG0735         503 LDCLA  507 (952)
T ss_pred             HHHHH
T ss_conf             03540


No 112
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.26  E-value=1.8e-07  Score=67.82  Aligned_cols=66  Identities=41%  Similarity=0.657  Sum_probs=56.1

Q ss_pred             HHHHHHHCCCCCHHCCCCCCC--CCCCCCCCHHHHHHHCCCCCCCCC-----------CCCCCCCCHHHHHHCCCCCCC
Q ss_conf             532221002221001357665--654332101223432046652211-----------246664202466401675422
Q gi|254780829|r  242 ENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFHVS  307 (437)
Q Consensus       242 ~~~~~~f~~~~~ki~~~~~~~--~~~~~~~g~~~~~~~~~e~~~v~~-----------~~~~~~~~~~~~i~~~~~~~~  307 (437)
                      ...|++|+||+|||+.++.+.  ..|+|.+|+|+.++.++|++.+.+           .|..+.|.+++||+.|||.-+
T Consensus       173 Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiEGt~v~vp~~ggrkhp~~~~~~idT~nILFI~gGAF~GL  251 (411)
T PRK05342        173 AQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGL  251 (411)
T ss_pred             HHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCH
T ss_conf             8368288850234542478888877765124899999987587141188877778776516761471799911553358


No 113
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.25  E-value=2.2e-06  Score=60.83  Aligned_cols=46  Identities=24%  Similarity=0.476  Sum_probs=39.0

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             30486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      -||||+++++.|.-|+-             ..-.|.-.|+.||.|+|||.+|+.+|+.+
T Consensus         5 ~iiGq~~i~~~L~~~i~-------------~~rl~HAyLF~Gp~G~GK~~~A~~~A~~l   50 (313)
T PRK05564          5 TIIGHENIKNRIDNSII-------------KGKFSHASLIVGEDGIGKSILAKEIANKI   50 (313)
T ss_pred             HCCCHHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             32682999999999998-------------79987504327999850999999999998


No 114
>PRK08116 hypothetical protein; Validated
Probab=98.25  E-value=2.3e-06  Score=60.72  Aligned_cols=73  Identities=23%  Similarity=0.412  Sum_probs=44.5

Q ss_pred             CCCHHH-HHHHHHHCEE--CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CC
Q ss_conf             688899-9998620304--86899999999998778864086444466566866996798886899999999970---78
Q gi|254780829|r    6 NFSPRE-IVSELDRYII--GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GA   79 (437)
Q Consensus         6 ~ltP~~-i~~~Ld~~Vv--GQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~V   79 (437)
                      ++.|+. ...-.+.|++  ||..|++ +|....++|....-        ...|+||.||||||||+||-++|..+   +.
T Consensus        67 s~i~~~f~~~tFeN~~~~~~~~~a~~-~a~~Y~~~f~~~~~--------~~~GLll~G~~GtGKThLa~aIa~~l~~~g~  137 (262)
T PRK08116         67 SLLDEKFRNSTFENWLFRKGSEKAYK-VAVKYVKKFEEMKK--------ESVGLLLWGSPGNGKTYLAAAIANELIEKGV  137 (262)
T ss_pred             CCCCHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHCC--------CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf             59998898192225568952599999-99999998987364--------6861899898999899999999999998799


Q ss_pred             CEEEEECC
Q ss_conf             77971434
Q gi|254780829|r   80 PFIKVEVT   87 (437)
Q Consensus        80 PF~~~daT   87 (437)
                      |-..+..+
T Consensus       138 ~V~~~~~~  145 (262)
T PRK08116        138 PVVFVNVP  145 (262)
T ss_pred             EEEEEEHH
T ss_conf             39998899


No 115
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.23  E-value=2.7e-06  Score=60.26  Aligned_cols=47  Identities=30%  Similarity=0.509  Sum_probs=40.8

Q ss_pred             HCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   18 RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        18 ~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ..||||+++++.+.-|+.             ..-.|...|+.||.|+|||.+|.++|+.+
T Consensus        17 ~~liGqe~~~~~L~~a~~-------------~grl~HA~Lf~Gp~GiGK~tlA~~~A~~l   63 (363)
T PRK07471         17 TALFGHAAAEAALLDAYR-------------SGRLHHAWLIGGPQGIGKATLAYRMARFL   63 (363)
T ss_pred             CCCCCHHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             731681999999999998-------------59976458767999818899999999998


No 116
>KOG1942 consensus
Probab=98.22  E-value=1.7e-06  Score=61.55  Aligned_cols=64  Identities=25%  Similarity=0.434  Sum_probs=48.2

Q ss_pred             HHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCCEEEEECCCE
Q ss_conf             2030486899999999998778864086444466566866996798886899999999970--787797143410
Q gi|254780829|r   17 DRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA--GAPFIKVEVTKF   89 (437)
Q Consensus        17 d~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l--~VPF~~~daT~f   89 (437)
                      -.-+|||+.|..+-.+-|- -   ++.+.     .--+.+|+-||||||||-||=++|++|  +|||....+|+.
T Consensus        37 ~~g~vGQ~~AReAagiivd-l---ik~Kk-----maGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEv  102 (456)
T KOG1942          37 AAGFVGQENAREAAGIIVD-L---IKSKK-----MAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEV  102 (456)
T ss_pred             CCCCCCCHHHHHHHHHHHH-H---HHHHH-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf             4451152666655108999-9---98663-----26727997369987656899999997479998566641055


No 117
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.21  E-value=1.9e-06  Score=61.25  Aligned_cols=35  Identities=37%  Similarity=0.724  Sum_probs=32.4

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             66866996798886899999999970787797143
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      +++||.|+|++|||||-++|.||+.++.||+-.|.
T Consensus         1 M~~~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D~   35 (172)
T PRK03731          1 MTQPLFLVGPRGCGKTTVGMALAQALGYRFVDTDL   35 (172)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
T ss_conf             99988998899998899999999985999797869


No 118
>PRK13947 shikimate kinase; Provisional
Probab=98.21  E-value=1.6e-06  Score=61.61  Aligned_cols=33  Identities=36%  Similarity=0.617  Sum_probs=31.2

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             866996798886899999999970787797143
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      +||.|+|++|||||-+.|.||+.++.||+-.|.
T Consensus         2 knI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~   34 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKKVATTLSFGFIDTDK   34 (171)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf             858997999998899999999997969898749


No 119
>PRK08181 transposase; Validated
Probab=98.18  E-value=1.5e-06  Score=61.92  Aligned_cols=41  Identities=24%  Similarity=0.387  Sum_probs=29.2

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf             66866996798886899999999970---787797143410121
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI   92 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~   92 (437)
                      .+.|++|+||||||||.||.+|+..+   |-.-....++.+.+.
T Consensus       105 ~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~  148 (269)
T PRK08181        105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK  148 (269)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf             48708998999987889999999999987993999789999999


No 120
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=98.18  E-value=2.5e-06  Score=60.40  Aligned_cols=61  Identities=26%  Similarity=0.483  Sum_probs=44.8

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf             0486899999999998778864086444466566866996798886899999999970---787797143410121
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI   92 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~   92 (437)
                      +||+..+-+.+---+    +|...        .+.+||+.|++||||+++||++-...   +-||+.++|+.+.+.
T Consensus         1 lIG~S~~m~~l~~~i----~~~a~--------~~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~   64 (168)
T pfam00158         1 LIGESPAMQEVLELA----KRVAP--------TDATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEE   64 (168)
T ss_pred             CEECCHHHHHHHHHH----HHHHC--------CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf             973899999999999----99958--------89988998999888899999999852435688312567899877


No 121
>PRK13948 shikimate kinase; Provisional
Probab=98.16  E-value=3e-06  Score=59.94  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=33.2

Q ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             6566866996798886899999999970787797143
Q gi|254780829|r   50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        50 e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      +-.++||.|+|++|||||-+.|.||+.++.||+-.|.
T Consensus         7 p~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D~   43 (182)
T PRK13948          7 PRPATFVALAGFMGTGKSRIGWELSRALALHFVDTDK   43 (182)
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf             9999818988999998899999999996959888849


No 122
>PRK06526 transposase; Provisional
Probab=98.15  E-value=1.9e-06  Score=61.16  Aligned_cols=40  Identities=25%  Similarity=0.460  Sum_probs=29.0

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEE
Q ss_conf             66866996798886899999999970---78779714341012
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE   91 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE   91 (437)
                      .+.||+++||||||||.||.+|+..+   |-+-....++++.+
T Consensus        97 ~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~  139 (254)
T PRK06526         97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA  139 (254)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
T ss_conf             5887899899998689999999999998699679987799999


No 123
>pfam10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein. This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.
Probab=98.15  E-value=1.5e-05  Score=55.35  Aligned_cols=79  Identities=27%  Similarity=0.369  Sum_probs=60.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC---
Q ss_conf             42467888764346889999999987519689984249999999999840400123724679999998677621275---
Q gi|254780829|r  329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS---  405 (437)
Q Consensus       329 L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe~p---  405 (437)
                      |+++++.+|...    .+.+..+.++..+++|.|++++++.|++.++..+     +|||+|+.++++.++++..+..   
T Consensus         1 L~~~~l~~Iv~~----~l~~l~~rl~~~~i~l~~~~~~~~~i~~~~~~~~-----~GAR~l~r~I~~~i~~~la~~il~~   71 (89)
T pfam10431         1 LSKEELRQIVDL----QLKRLQKRLAERGITLELTDAAKDWLAEKGYDPE-----YGARPLRRAIQREIEDPLAEEILSG   71 (89)
T ss_pred             CCHHHHHHHHHH----HHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             988999999999----9999999999789079986899999998356756-----7947899999999999999999849


Q ss_pred             -CCCCCEEEECH
Q ss_conf             -68776899859
Q gi|254780829|r  406 -DLQEKTVVIDA  416 (437)
Q Consensus       406 -~~~~~~v~Id~  416 (437)
                       -..+..+.|+-
T Consensus        72 ~~~~~~~i~i~~   83 (89)
T pfam10431        72 ELKEGDTVRVDV   83 (89)
T ss_pred             CCCCCCEEEEEE
T ss_conf             899979999971


No 124
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.14  E-value=3.5e-06  Score=59.51  Aligned_cols=59  Identities=22%  Similarity=0.331  Sum_probs=40.7

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             304868999999999987788640864-4446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||+++++.|--|+.+  .|.-... ..-..-...-.|+.||.|||||.+|+++|+.++-
T Consensus         6 ~ivGQe~v~~~L~~A~~~--~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C   65 (395)
T PRK07940          6 RLVGQDAVVAELRAAARA--ARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQC   65 (395)
T ss_pred             HHCCCHHHHHHHHHHHHH--CCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             315929999999999983--634344333346876603763689987889999999999669


No 125
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.14  E-value=4.8e-06  Score=58.62  Aligned_cols=47  Identities=28%  Similarity=0.531  Sum_probs=40.4

Q ss_pred             HCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   18 RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        18 ~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ..+|||+++++.+.-|+.             ..-.|...|+.||.|+|||.+|.++|+.+
T Consensus        23 ~~liGq~~~~~~L~~a~~-------------~gRl~HA~Lf~GP~GiGKaTlA~~~A~~L   69 (352)
T PRK09112         23 NRLFGHEEARAFLAQAYR-------------EGRLHHALLFEGPEGIGKATLAFHLANHI   69 (352)
T ss_pred             HHHCCHHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             462786999999999998-------------49965246535899808999999999998


No 126
>PRK13949 shikimate kinase; Provisional
Probab=98.14  E-value=3e-06  Score=59.96  Aligned_cols=33  Identities=42%  Similarity=0.708  Sum_probs=31.2

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             866996798886899999999970787797143
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      +||.|+|++|||||-+.|.||+.++.||+-.|.
T Consensus         2 k~I~LiG~mGsGKstiGk~La~~l~~~fiD~D~   34 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF   34 (169)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
T ss_conf             838997999998899999999995999797849


No 127
>PRK09183 transposase/IS protein; Provisional
Probab=98.13  E-value=1.9e-06  Score=61.19  Aligned_cols=26  Identities=46%  Similarity=0.698  Sum_probs=24.1

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      .+.||+|+||||||||.||-+|+..+
T Consensus       100 ~~~Nvil~G~~GtGKThLA~Alg~~A  125 (258)
T PRK09183        100 RNENIVLLGPSGVGKTHLAIALGYEA  125 (258)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             58867998999986899999999999


No 128
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277   This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=98.12  E-value=4e-06  Score=59.11  Aligned_cols=75  Identities=23%  Similarity=0.369  Sum_probs=50.9

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEECCCCCCHHHHHHHHHHHH-------CCC-E--EEEECC
Q ss_conf             3048689999999999877886408644446-6566866996798886899999999970-------787-7--971434
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKTAISRRLARLA-------GAP-F--IKVEVT   87 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~-e~~psNiLLiGPtGtGKTlLAktLA~~l-------~VP-F--~~~daT   87 (437)
                      .++|=|+=-+.++-++.     -     .-. .-.|+||++.||||||||+.+|.+.+.|       |++ |  +.+.|.
T Consensus        18 ~i~hRdeqI~~l~~~L~-----~-----~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~   87 (383)
T TIGR02928        18 RIVHRDEQIEELAKALR-----P-----ILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQ   87 (383)
T ss_pred             CCCCCHHHHHHHHHHHH-----H-----HHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf             46686789999999988-----7-----5067489872588788898788999999999999862269971589997785


Q ss_pred             CEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             10121223431013467888765
Q gi|254780829|r   88 KFTEIGYVGRNVEQIIRDLVDVA  110 (437)
Q Consensus        88 ~ftE~gyvG~DVes~i~~l~~~a  110 (437)
                      .+.=-       -+++.+|+...
T Consensus        88 ~~~T~-------y~~~~~L~~~l  103 (383)
T TIGR02928        88 ILDTS-------YQVLVELANQL  103 (383)
T ss_pred             CCCCH-------HHHHHHHHHHH
T ss_conf             46846-------99999999985


No 129
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.11  E-value=2.6e-06  Score=60.38  Aligned_cols=27  Identities=59%  Similarity=0.891  Sum_probs=25.2

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             566866996798886899999999970
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ..|+||+|.||||||||.|||.+|..+
T Consensus       192 ktKknvIL~G~pGtGKT~lAk~lA~~l  218 (459)
T PRK11331        192 TIKKNIILQGPPGVGKTFVARRLAYLL  218 (459)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             458827965899988789999999997


No 130
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.08  E-value=0.00019  Score=48.29  Aligned_cols=98  Identities=20%  Similarity=0.323  Sum_probs=55.7

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCC-------EEEEECCCEE-ECCCCCCCHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf             66866996798886899999999970---787-------7971434101-212234310134678887652127899-85
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAP-------FIKVEVTKFT-EIGYVGRNVEQIIRDLVDVAINIVRES-RR  119 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VP-------F~~~daT~ft-E~gyvG~DVes~i~~l~~~a~~~~~~a-~~  119 (437)
                      .|+|.+|+|+||||||-|+..||...   +||       .+..|-+.+. -+.|-|+=-+. +..+++...   +.. ..
T Consensus       198 ~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg~L~AGakyRGeFEeR-Lk~il~ev~---~~~~~i  273 (857)
T PRK10865        198 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEER-LKGVLNDLA---KQEGNV  273 (857)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHH-HHHHHHHHH---HCCCCE
T ss_conf             7899758789998899999999999983899978816902473388786147652117999-999999998---478986


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             6549888868887555531143211004668988986168
Q gi|254780829|r  120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE  159 (437)
Q Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (437)
                      +.|++++-..     .+++.+ .+..+..+.+-..|..++
T Consensus       274 ILFIDEiHtl-----vGaG~~-~G~~DaaNlLKPaLaRGe  307 (857)
T PRK10865        274 ILFIDELHTM-----VGAGKA-DGAMDAGNMLKPALARGE  307 (857)
T ss_pred             EEEECCHHHH-----CCCCCC-CCCCCHHHHHHHHHHCCC
T ss_conf             9997343543-----368877-775347888678873798


No 131
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.06  E-value=1.2e-05  Score=56.12  Aligned_cols=64  Identities=13%  Similarity=0.223  Sum_probs=46.4

Q ss_pred             CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             7688899999862030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r    5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus         5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ..+.|+=...-.|.|.+--+..+++++.|.+  |.--. ..      -.+|.|+.||||||||.||-++|.+|
T Consensus        57 SgI~~~~~~~~Feny~~~~~~q~~al~~a~~--y~enf-~~------~~~gLlF~G~~GTGKThLA~aIan~L  120 (242)
T PRK07952         57 SGIRPLHQNCSFENYRVECEGQMNALSKARQ--YVEEF-DG------NIASFIFSGKPGTGKNHLAAAICNEL  120 (242)
T ss_pred             CCCCHHHHCCEEECEECCCHHHHHHHHHHHH--HHHHH-CC------CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             5998577288421201587778999999999--99865-43------88717997899997899999999999


No 132
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.05  E-value=0.00012  Score=49.46  Aligned_cols=71  Identities=20%  Similarity=0.310  Sum_probs=42.3

Q ss_pred             HHHHCEECHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCE
Q ss_conf             86203048689999-999999877886408644446656686-6996798886899999999970787---797143410
Q gi|254780829|r   15 ELDRYIIGQQDAKR-AVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLAGAP---FIKVEVTKF   89 (437)
Q Consensus        15 ~Ld~~VvGQ~~AKk-~lavav~nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l~VP---F~~~daT~f   89 (437)
                      -.|.||||-...-- +.|-+|-      ..+...  .-.+=| ..+.|++|.|||.|.+|++.++.-|   .+++.+..|
T Consensus       109 tFd~FVvG~~N~lA~~aa~~va------~~~~~~--~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvtae~F  180 (455)
T PRK12422        109 TFANFLVTPENDLPFRILQEFA------KVSEQG--KGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSSELF  180 (455)
T ss_pred             CCCCEEECCCCHHHHHHHHHHH------HCCCCC--CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHH
T ss_conf             3558331586099999999998------375535--88767875887899997899999999985379986999749999


Q ss_pred             EECC
Q ss_conf             1212
Q gi|254780829|r   90 TEIG   93 (437)
Q Consensus        90 tE~g   93 (437)
                      +.-+
T Consensus       181 ~~~~  184 (455)
T PRK12422        181 TEHL  184 (455)
T ss_pred             HHHH
T ss_conf             9999


No 133
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.04  E-value=0.00028  Score=47.18  Aligned_cols=98  Identities=22%  Similarity=0.385  Sum_probs=53.8

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCC-------EEEEECCCEE-ECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970---787-------7971434101-212234310134678887652127899856
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAP-------FIKVEVTKFT-EIGYVGRNVEQIIRDLVDVAINIVRESRRD  120 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VP-------F~~~daT~ft-E~gyvG~DVes~i~~l~~~a~~~~~~a~~~  120 (437)
                      .|+|.+|+|.||||||-|+.-||...   +||       ++..|...+. -+.|-|+ -|.-+..+++....   ....+
T Consensus       199 ~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGe-FEeRlk~il~ei~~---~~~iI  274 (823)
T CHL00095        199 TKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGE-FEERIKKIMDEIKK---ANNII  274 (823)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHH-HHHHHHHHHHHHHH---CCCEE
T ss_conf             248850237999879999999999760889986875993688428877533422267-99999999999985---79869


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             549888868887555531143211004668988986168
Q gi|254780829|r  121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE  159 (437)
Q Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (437)
                      .|++++-.     +.+++.+ .+..+..+.+-..|-.++
T Consensus       275 LFIDEiHt-----lvGaG~~-~g~~DaaNlLKPaLarGe  307 (823)
T CHL00095        275 LVIDEIHT-----LIGAGAA-EGAIDAANILKPALARGK  307 (823)
T ss_pred             EEECCHHH-----HCCCCCC-CCCHHHHHHHHHHHHCCC
T ss_conf             99735165-----3288976-664317887657864898


No 134
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.03  E-value=7.8e-06  Score=57.24  Aligned_cols=62  Identities=26%  Similarity=0.465  Sum_probs=48.5

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970---787797143410121
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI   92 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~   92 (437)
                      -+||+..|-+.+---+    +|...        ...+||+.|.+||||+++||++-...   +-||+.+||+.+.+.
T Consensus         7 ~liG~S~~m~~v~~~~----~~~A~--------~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~   71 (325)
T PRK11608          7 NLLGEANSFLEVLEQV----SHLAP--------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN   71 (325)
T ss_pred             CCEECCHHHHHHHHHH----HHHHC--------CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
T ss_conf             9858999999999999----99968--------89998988989837999999999658867999778877989977


No 135
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462    The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=98.02  E-value=1.5e-05  Score=55.48  Aligned_cols=79  Identities=29%  Similarity=0.414  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC-CEEECCCCCCCHHH
Q ss_conf             68999999999987788640864444665668669967988868999999999707877971434-10121223431013
Q gi|254780829|r   23 QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT-KFTEIGYVGRNVEQ  101 (437)
Q Consensus        23 Q~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT-~ftE~gyvG~DVes  101 (437)
                      -|+-+++.+-|.+      +++.+..       |=|.||+|||||-||.+||+.++=|-+.+.|- +|+-.=-||+--|-
T Consensus         4 t~~v~~v~~R~l~------yL~~G~P-------vHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~   70 (265)
T TIGR02640         4 TDAVKRVTSRALR------YLKSGYP-------VHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGY   70 (265)
T ss_pred             CHHHHHHHHHHHH------HHCCCCC-------EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf             7237999998766------3227886-------67447888556899999997368968998658232654423154675


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             4678887652127
Q gi|254780829|r  102 IIRDLVDVAINIV  114 (437)
Q Consensus       102 ~i~~l~~~a~~~~  114 (437)
                      --.++.+.+..++
T Consensus        71 ~~~kv~DqfihnV   83 (265)
T TIGR02640        71 TRKKVVDQFIHNV   83 (265)
T ss_pred             EEEEEEECCEEEE
T ss_conf             2222320121113


No 136
>KOG0989 consensus
Probab=98.02  E-value=1.2e-05  Score=55.95  Aligned_cols=58  Identities=29%  Similarity=0.391  Sum_probs=44.7

Q ss_pred             CHHHHHH--HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             8899999--862030486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r    8 SPREIVS--ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus         8 tP~~i~~--~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      ++-+-|+  .+|+. +||+..+.+|.-|+    .| +         .-.|.|+.||||||||=-|++.|+.++-|
T Consensus        25 swteKYrPkt~de~-~gQe~vV~~L~~a~----~~-~---------~lp~~LFyGPpGTGKTStalafar~L~~~   84 (346)
T KOG0989          25 SWTEKYRPKTFDEL-AGQEHVVQVLKNAL----LR-R---------ILPHYLFYGPPGTGKTSTALAFARALNCE   84 (346)
T ss_pred             CHHHHHCCCCHHHH-CCHHHHHHHHHHHH----HH-C---------CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             53787478737765-01599999999998----60-6---------88607866899986768999999985574


No 137
>PRK04132 replication factor C small subunit; Provisional
Probab=98.00  E-value=1.5e-05  Score=55.37  Aligned_cols=48  Identities=38%  Similarity=0.655  Sum_probs=36.8

Q ss_pred             HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             862030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        15 ~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      .||+ |||||+-.|.|-     ||-...    .    +| +.|+-||||||||.=|.+||+.|
T Consensus        23 ~Ldd-IVgQehIVkRLK-----~YVk~~----s----mP-HLLFaGPPGvGKt~~al~lar~l   70 (863)
T PRK04132         23 RLDE-IVGQDHIVKRLK-----HYVKTG----S----MP-HLLFAGPPGVGKTTAALALAREL   70 (863)
T ss_pred             CHHH-HCCHHHHHHHHH-----HHHCCC----C----CC-CEEECCCCCCCCHHHHHHHHHHH
T ss_conf             1655-227499999999-----886238----8----85-44304899877144788888876


No 138
>PRK00625 shikimate kinase; Provisional
Probab=98.00  E-value=6.2e-06  Score=57.85  Aligned_cols=33  Identities=33%  Similarity=0.585  Sum_probs=30.7

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             866996798886899999999970787797143
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      -||.|+|++|||||-+.|.||+.++.||+-.|-
T Consensus         1 MnI~LIG~mGsGKStiGk~LA~~l~~~FvD~D~   33 (173)
T PRK00625          1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD   33 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf             929998999998899999999993999577499


No 139
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=98.00  E-value=6.4e-06  Score=57.77  Aligned_cols=38  Identities=34%  Similarity=0.589  Sum_probs=28.2

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCE
Q ss_conf             66866996798886899999999970---787797143410
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKF   89 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~f   89 (437)
                      ...|++|.||||||||.||-+++..+   +-+...+.+++|
T Consensus        46 ~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L   86 (178)
T pfam01695        46 QAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDL   86 (178)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf             58768998999987899999999999986985999961679


No 140
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.99  E-value=1.3e-05  Score=55.87  Aligned_cols=34  Identities=41%  Similarity=0.685  Sum_probs=31.1

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             6866996798886899999999970787797143
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      +.||.|+|+.|+|||-+.|.||+.|+.||+-.|.
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~   35 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ   35 (172)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf             9618997179997768999999981998022469


No 141
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.98  E-value=1.3e-05  Score=55.76  Aligned_cols=62  Identities=26%  Similarity=0.409  Sum_probs=46.5

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCEEEC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997---0787797143410121
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL---AGAPFIKVEVTKFTEI   92 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~---l~VPF~~~daT~ftE~   92 (437)
                      -+|||..|-+.|---+    .++-        ..+.+||+.|.|||||.++||+|=..   .+-||+.++|..+.|.
T Consensus       187 elIG~S~~m~~l~~~i----~~vA--------~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~  251 (510)
T PRK05022        187 EMIGQSPAMQQLKKEI----EVVA--------ASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPES  251 (510)
T ss_pred             CEEECCHHHHHHHHHH----HHHH--------CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
T ss_conf             7520899999999999----9996--------899988988989813999999999668878998578889999856


No 142
>KOG0743 consensus
Probab=97.98  E-value=1.3e-05  Score=55.76  Aligned_cols=50  Identities=26%  Similarity=0.457  Sum_probs=35.2

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHH
Q ss_conf             6686699679888689999999997078779714341012122343101346788876
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV  109 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~  109 (437)
                      =|.|.||.|||||||+=+.-|+|.+|+--..-.+-   |++   +.|-+  +.+|+-.
T Consensus       234 wKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL---t~v---~~n~d--Lr~LL~~  283 (457)
T KOG0743         234 WKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL---TEV---KLDSD--LRHLLLA  283 (457)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEEE---CCC---CCCHH--HHHHHHH
T ss_conf             00041204799998889999997205873677440---023---68389--9999972


No 143
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892    Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.96  E-value=6.9e-06  Score=57.57  Aligned_cols=63  Identities=30%  Similarity=0.412  Sum_probs=42.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             6996798886899999999970787797143410121223431013467888765212789985654988886888755
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI  134 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~  134 (437)
                      |..-||||||||-+||.||+.|+.|++++        |        -++.|.+.-+.++.+...-.-.-+++..++.+.
T Consensus         3 I~ISGpPGSGktTvA~~lA~~Lsl~~iSa--------G--------~iRelA~~~Gldl~E~~~aee~~eIDk~iD~~~   65 (173)
T TIGR02173         3 ITISGPPGSGKTTVAKILAEKLSLKLISA--------G--------DIRELAEKMGLDLAESKYAEENPEIDKKIDRRI   65 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEECC--------C--------HHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHH
T ss_conf             88735896864789999998639831202--------0--------078898642988777344305863116753788


No 144
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.96  E-value=6.8e-06  Score=57.62  Aligned_cols=40  Identities=43%  Similarity=0.663  Sum_probs=34.0

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCEEEC
Q ss_conf             6866996798886899999999970787---797143410121
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLAGAP---FIKVEVTKFTEI   92 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l~VP---F~~~daT~ftE~   92 (437)
                      +.+++++||||||||.+++.+|..+.-+   ++.++++...+.
T Consensus         2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~   44 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE   44 (148)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH
T ss_conf             9789999999702999999999872668996899875998988


No 145
>KOG0744 consensus
Probab=97.95  E-value=1.3e-05  Score=55.81  Aligned_cols=44  Identities=34%  Similarity=0.484  Sum_probs=31.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHH
Q ss_conf             6996798886899999999970787797143410121223431013467888
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV  107 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~  107 (437)
                      |||-||||||||-|+|+||+.+.+-.        .-..|.|.-+|---+.|.
T Consensus       180 iLlhGPPGTGKTSLCKaLaQkLSIR~--------~~~y~~~~liEinshsLF  223 (423)
T KOG0744         180 ILLHGPPGTGKTSLCKALAQKLSIRT--------NDRYYKGQLIEINSHSLF  223 (423)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHEEEE--------CCCCCCCEEEEEEHHHHH
T ss_conf             99857999882279999987514652--------376444069997046788


No 146
>PRK07261 topology modulation protein; Provisional
Probab=97.94  E-value=2.5e-05  Score=53.90  Aligned_cols=44  Identities=20%  Similarity=0.434  Sum_probs=35.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHH
Q ss_conf             699679888689999999997078779714341012122343101
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE  100 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVe  100 (437)
                      |+.+|+||+|||-|||.||..++.|++..|.= |=..|.+..+-+
T Consensus         3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l-~w~p~w~~~~~~   46 (171)
T PRK07261          3 IAIIGYSGSGKSTLARFLGQHYNCPVLHLDQL-HFSSNWQERDDD   46 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEECCE-EECCCCEECCHH
T ss_conf             99988999868999999999879797970227-888999888899


No 147
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.93  E-value=2.2e-05  Score=54.27  Aligned_cols=41  Identities=34%  Similarity=0.561  Sum_probs=35.6

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCEEEC
Q ss_conf             6686699679888689999999997---0787797143410121
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARL---AGAPFIKVEVTKFTEI   92 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~---l~VPF~~~daT~ftE~   92 (437)
                      .+.+||+.|+|||||.++||++-..   .+-||+.++|+.+.+.
T Consensus       165 s~~~VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~  208 (457)
T PRK11361        165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES  208 (457)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHH
T ss_conf             89958998899857899999999837988998387647879857


No 148
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.93  E-value=2.2e-05  Score=54.34  Aligned_cols=76  Identities=25%  Similarity=0.325  Sum_probs=45.7

Q ss_pred             CHHHHHH-HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEE
Q ss_conf             8899999-862030486899999999998778864086444466566866996798886899999999970---787797
Q gi|254780829|r    8 SPREIVS-ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIK   83 (437)
Q Consensus         8 tP~~i~~-~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~   83 (437)
                      -|++|.+ -|+.+.+-......++.-|.  .+-....+     ..-.+|+.|.||.|||||+||-++|.++   +.|.+.
T Consensus       118 mpk~i~~as~~d~~~~d~~R~~a~~~a~--~F~~~y~~-----~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~  190 (306)
T PRK08939        118 MPKDLLQATLADIDLDDLDRLDALMAAL--DFLEAYKP-----GEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTL  190 (306)
T ss_pred             CCHHHHCCCHHHCCCCCHHHHHHHHHHH--HHHHHHCC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             7799980989864889778999999999--99997376-----9888778898999998999999999999986992999


Q ss_pred             EECCCEE
Q ss_conf             1434101
Q gi|254780829|r   84 VEVTKFT   90 (437)
Q Consensus        84 ~daT~ft   90 (437)
                      +...+|.
T Consensus       191 v~~p~~~  197 (306)
T PRK08939        191 VHFPEFI  197 (306)
T ss_pred             EEHHHHH
T ss_conf             8759999


No 149
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.93  E-value=8e-06  Score=57.15  Aligned_cols=38  Identities=32%  Similarity=0.452  Sum_probs=29.6

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEE
Q ss_conf             6866996798886899999999970---7877971434101
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFT   90 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ft   90 (437)
                      ..|+||.||||+|||.||-++|+++   +.+-+...++.|.
T Consensus       183 ~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~  223 (330)
T PRK06835        183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELI  223 (330)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH
T ss_conf             88669889999988999999999999879949996299999


No 150
>pfam01434 Peptidase_M41 Peptidase family M41.
Probab=97.91  E-value=2.1e-05  Score=54.41  Aligned_cols=101  Identities=10%  Similarity=0.029  Sum_probs=73.3

Q ss_pred             HCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf             204665221124666420246640167542211212554334512688615542467888764346889999999987--
Q gi|254780829|r  277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK--  354 (437)
Q Consensus       277 ~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~--  354 (437)
                      .+.+.++..++||+++|+.+.|++.+.++..|.+++|+...+++....|-+......-..++.+..-+|.++..+.+-  
T Consensus         2 ~ls~~ek~~vA~HEaGHAlva~~l~~~~~v~kvtI~prg~alG~t~~~p~ed~~~~tk~~l~~~I~v~LgGraAEei~fG   81 (192)
T pfam01434         2 VISEEEKRLVAYHEAGHALVGLLLPGADPVHKVTIIPRGQALGYTQFLPEEDKLLYTKSQLLARIDVALGGRAAEELIFG   81 (192)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99989999999999999999998469998217998627887635786573011215899999999998638999999818


Q ss_pred             HCCCEEEECHHHHHHHHHHHHHHH
Q ss_conf             519689984249999999999840
Q gi|254780829|r  355 TEGIILDFTEDSIDALADVAVNLN  378 (437)
Q Consensus       355 ~~~v~L~ft~~Al~~IA~~A~~~~  378 (437)
                      .++|.-.-++| +....+.|.+|-
T Consensus        82 ~~~vttGa~~D-L~~At~lA~~mV  104 (192)
T pfam01434        82 DDEVTTGASND-LEQATKIARQMV  104 (192)
T ss_pred             CCCCCCCCHHH-HHHHHHHHHHHH
T ss_conf             99877671522-999999999999


No 151
>PRK08118 topology modulation protein; Reviewed
Probab=97.91  E-value=3.1e-05  Score=53.34  Aligned_cols=40  Identities=28%  Similarity=0.572  Sum_probs=34.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCC
Q ss_conf             69967988868999999999707877971434101212234
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG   96 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG   96 (437)
                      |+.+|+||+|||-||+.||..+|.|.+..|. =|=+.|.+.
T Consensus         4 I~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~-l~w~~~w~~   43 (167)
T PRK08118          4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDA-LFWKPNWEG   43 (167)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEECCC-EEECCCCCC
T ss_conf             9998899987999999999988969796443-476689946


No 152
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.91  E-value=2.1e-05  Score=54.48  Aligned_cols=41  Identities=20%  Similarity=0.456  Sum_probs=35.9

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHH---HHCCCEEEEECCCEEEC
Q ss_conf             668669967988868999999999---70787797143410121
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLAR---LAGAPFIKVEVTKFTEI   92 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~---~l~VPF~~~daT~ftE~   92 (437)
                      ..++||+.|+|||||.++||++-.   -.+-||+.++|+.+.+.
T Consensus       161 s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~  204 (441)
T PRK10365        161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES  204 (441)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
T ss_conf             89948998999810999999999657877898079878989845


No 153
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.89  E-value=1.4e-05  Score=55.53  Aligned_cols=66  Identities=26%  Similarity=0.384  Sum_probs=55.0

Q ss_pred             HHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCE
Q ss_conf             9999862030486899999999998778864086444466566866996798886899999999970-787797143410
Q gi|254780829|r   11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA-GAPFIKVEVTKF   89 (437)
Q Consensus        11 ~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l-~VPF~~~daT~f   89 (437)
                      .+-.+|++.++.-+++.+.+-.|+-                .-.+++|+|||||+|.+|||+++... +..||--=.|.|
T Consensus        13 ~l~~~L~~gl~ERe~~i~l~lLaal----------------agehvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRF   76 (498)
T PRK13531         13 RLSSALEKGLYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRF   76 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----------------CCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC
T ss_conf             9999997011446999999999997----------------289469888995138899999999855740899998746


Q ss_pred             EEC
Q ss_conf             121
Q gi|254780829|r   90 TEI   92 (437)
Q Consensus        90 tE~   92 (437)
                      |+-
T Consensus        77 stP   79 (498)
T PRK13531         77 STP   79 (498)
T ss_pred             CCH
T ss_conf             988


No 154
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.89  E-value=0.00067  Score=44.69  Aligned_cols=67  Identities=22%  Similarity=0.387  Sum_probs=41.4

Q ss_pred             HHHHCEECHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHH--CC---CEEEEECC
Q ss_conf             8620304868999-9999999877886408644446656686-6996798886899999999970--78---77971434
Q gi|254780829|r   15 ELDRYIIGQQDAK-RAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLA--GA---PFIKVEVT   87 (437)
Q Consensus        15 ~Ld~~VvGQ~~AK-k~lavav~nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l--~V---PF~~~daT   87 (437)
                      ..|.||+|-.... .+++.++-      ..++.      +.| +++.||+|+|||.|++++...+  .-   -++.+++.
T Consensus        85 tFdnFv~g~~N~~A~aa~~~va------~~~g~------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se  152 (408)
T COG0593          85 TFDNFVVGPSNRLAYAAAKAVA------ENPGG------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE  152 (408)
T ss_pred             CHHHEEECCCHHHHHHHHHHHH------HCCCC------CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf             5542204774499999999987------56688------68957998799997899999999999862998648850489


Q ss_pred             CEEECC
Q ss_conf             101212
Q gi|254780829|r   88 KFTEIG   93 (437)
Q Consensus        88 ~ftE~g   93 (437)
                      .|+..+
T Consensus       153 ~f~~~~  158 (408)
T COG0593         153 DFTNDF  158 (408)
T ss_pred             HHHHHH
T ss_conf             989999


No 155
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.88  E-value=3e-05  Score=53.41  Aligned_cols=47  Identities=26%  Similarity=0.388  Sum_probs=40.4

Q ss_pred             HCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   18 RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        18 ~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +-||||+.+++.|.-++.             ....|...|+.||.|+||+.+|+..|+.+
T Consensus         4 ~~iiGq~~~~~~L~~ai~-------------~~rl~hAyLF~Gp~G~GK~~~A~~fa~~L   50 (314)
T PRK07399          4 ANLIGQPLAIELLTAAIE-------------QNRIAPAYLFAGPEGVGRKLAALRFIEGL   50 (314)
T ss_pred             CCCCCCHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             312594999999999998-------------59967448778999832999999999998


No 156
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.88  E-value=2.6e-05  Score=53.83  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=38.3

Q ss_pred             EEC-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             048-689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   20 IIG-QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        20 VvG-Q~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      ++| |+.+++.|.-++.    +         .-.|--.|+.||.|+||+.+|+++|+.+.-
T Consensus         7 ~~~~Q~~i~~~L~~~i~----~---------~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC   54 (329)
T PRK08058          7 LTALQPIVVKMLQNSIA----K---------NRLAHAYLFEGAKGTGKKATALWLAKSLFC   54 (329)
T ss_pred             HHHHHHHHHHHHHHHHH----C---------CCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             88318999999999998----5---------996615655789998899999999999739


No 157
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87  E-value=3e-05  Score=53.48  Aligned_cols=48  Identities=29%  Similarity=0.441  Sum_probs=40.3

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -||||+...++|+-|+-+          .   .+..-.||.||-|||||-+||-+|+.||-
T Consensus        17 ~~vgq~~v~~~l~~a~~~----------~---r~~haylf~g~rg~gktt~ari~ak~lnc   64 (696)
T PRK06872         17 EVVGQEHILTALSNGLKE----------N---RLHHAYLFSGTRGVGKTSIARLFAKGLNC   64 (696)
T ss_pred             HHCCCHHHHHHHHHHHHC----------C---CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             523859999999999971----------9---86304751178988888999999998678


No 158
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.84  E-value=3e-05  Score=53.40  Aligned_cols=41  Identities=29%  Similarity=0.515  Sum_probs=35.5

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCEEEC
Q ss_conf             6686699679888689999999997---0787797143410121
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARL---AGAPFIKVEVTKFTEI   92 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~---l~VPF~~~daT~ftE~   92 (437)
                      .+.+||+.|++||||+++||+|=..   .+-||+.++|+.+.+-
T Consensus       160 ~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~  203 (469)
T PRK10923        160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD  203 (469)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
T ss_conf             89978998989826999999999748877999578767889977


No 159
>PRK12377 putative replication protein; Provisional
Probab=97.83  E-value=1.5e-05  Score=55.35  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=24.1

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ...|++|+||||||||.||-+|+.++
T Consensus       100 ~~~NlIf~G~pGtGKTHLA~AIg~~a  125 (248)
T PRK12377        100 GCTNFVFSGKPGTGKNHLAAAIGNRL  125 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             88608998999987889999999999


No 160
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.81  E-value=2.2e-05  Score=54.35  Aligned_cols=31  Identities=39%  Similarity=0.716  Sum_probs=28.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             6996798886899999999970787797143
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      |++.|++|||||-+|++||+.++.||+-.|-
T Consensus         2 iiv~GvsGsGKSTia~~La~~lg~~~i~~D~   32 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDD   32 (150)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEECCCC
T ss_conf             8999189999999999999971995641543


No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.80  E-value=5.3e-05  Score=51.85  Aligned_cols=97  Identities=22%  Similarity=0.348  Sum_probs=52.8

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCC-------EEEEECCCEE-ECCCCCCCHHHHHHHHHHHHHHHHHHH--H
Q ss_conf             66866996798886899999999970---787-------7971434101-212234310134678887652127899--8
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAP-------FIKVEVTKFT-EIGYVGRNVEQIIRDLVDVAINIVRES--R  118 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VP-------F~~~daT~ft-E~gyvG~DVes~i~~l~~~a~~~~~~a--~  118 (437)
                      .|+|.+|+|.||||||-|+.-||...   +||       .+..|.+.+. -+.|-|+ -|.=+..+.+..    +++  .
T Consensus       193 ~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg~LvAGtkyRGe-FEeRlk~ii~ev----~~~~~~  267 (852)
T TIGR03346       193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGE-FEERLKAVLNEV----TKSEGQ  267 (852)
T ss_pred             CCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHHCCCCCCHH-HHHHHHHHHHHH----HHCCCC
T ss_conf             248972127999879999999999986699997885185127528877521530078-999999999999----858998


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             56549888868887555531143211004668988986168
Q gi|254780829|r  119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE  159 (437)
Q Consensus       119 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (437)
                      .+.|++++-..     .+++.+ .+..+..+.+-..|-.++
T Consensus       268 iILFIDEiHtl-----iGaG~~-~G~~DAaNlLKPaLarGe  302 (852)
T TIGR03346       268 IILFIDELHTL-----VGAGKA-EGAMDAGNMLKPALARGE  302 (852)
T ss_pred             EEEEEHHHHHH-----CCCCCC-CCCCCHHHHHHHHHHCCC
T ss_conf             79996125553-----268876-664106777437874798


No 162
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.78  E-value=2.8e-05  Score=53.58  Aligned_cols=37  Identities=27%  Similarity=0.522  Sum_probs=28.5

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCC
Q ss_conf             66866996798886899999999970---78779714341
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTK   88 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~   88 (437)
                      .+.|++|+||||||||.||-++|..+   +++...+..++
T Consensus       104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~e  143 (254)
T COG1484         104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPD  143 (254)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH
T ss_conf             5882899899998799999999999998398499988599


No 163
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.77  E-value=2.8e-05  Score=53.67  Aligned_cols=33  Identities=33%  Similarity=0.571  Sum_probs=29.6

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             686699679888689999999997078779714
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE   85 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~d   85 (437)
                      ++-|++.|++|||||-++++||+.++.||+-.|
T Consensus         3 ~~a~VVmGVsGsGKSTvg~~LA~~L~~~fiegD   35 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGD   35 (176)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf             857999828989989999999999598776234


No 164
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74  E-value=6.6e-05  Score=51.22  Aligned_cols=118  Identities=20%  Similarity=0.189  Sum_probs=69.1

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC------------EEEE-E
Q ss_conf             30486899999999998778864086444466566866996798886899999999970787------------7971-4
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP------------FIKV-E   85 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP------------F~~~-d   85 (437)
                      -||||+.-.++|.-|+-    .-         -++.-.||.||-|||||-+||-||+.+|--            --.| .
T Consensus        24 ~~~gq~~~~~~l~~~~~----~~---------~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~   90 (600)
T PRK09111         24 DLIGQEAMVRTLRNAFE----TG---------RIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEH   90 (600)
T ss_pred             HHCCCHHHHHHHHHHHH----CC---------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf             63385999999999997----29---------842047645789878999999999996698876668998898998865


Q ss_pred             CCC--------EEE---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             341--------012---122343101346788876521278998565498888688875555311432110046689889
Q gi|254780829|r   86 VTK--------FTE---IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK  154 (437)
Q Consensus        86 aT~--------ftE---~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (437)
                      |.+        ..|   +-.-  .|+.+. .|++...|..-.+...+++++   .          -|.-.....+.++..
T Consensus        91 c~~i~~~~~~d~~e~daas~~--~v~~~r-~~~~~~~~~p~~~~~kv~iid---e----------vhmls~~afnallkt  154 (600)
T PRK09111         91 CQAIMEGRHVDVIEMDAASHT--GVDDIR-EIIESVRYRPVSARYKVYIID---E----------VHMLSTAAFNALLKT  154 (600)
T ss_pred             HHHHHCCCCCCEEEEECCCCC--CHHHHH-HHHHHHCCCCCCCCEEEEEEE---C----------CCCCCHHHHHHHHHH
T ss_conf             898866899875885155457--888999-999860538877754699960---0----------110579999999987


Q ss_pred             HHHCCCCCCEE
Q ss_conf             86168888549
Q gi|254780829|r  155 LRDGEISDKEI  165 (437)
Q Consensus       155 l~~~~~~~~~i  165 (437)
                      |..+......|
T Consensus       155 leepp~~~~fi  165 (600)
T PRK09111        155 LEEPPPHVKFI  165 (600)
T ss_pred             HHCCCCCEEEE
T ss_conf             62598654999


No 165
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.73  E-value=3.5e-05  Score=53.03  Aligned_cols=40  Identities=35%  Similarity=0.585  Sum_probs=35.6

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHH----HCCCEEEEECCCEEECC
Q ss_conf             86699679888689999999997----07877971434101212
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARL----AGAPFIKVEVTKFTEIG   93 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~----l~VPF~~~daT~ftE~g   93 (437)
                      .+||++|+|||||+++|+.+...    .+.||+++.|..|+|-.
T Consensus       102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~  145 (403)
T COG1221         102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL  145 (403)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCH
T ss_conf             84798668875388999999986121358987997777737677


No 166
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.73  E-value=3.7e-05  Score=52.86  Aligned_cols=46  Identities=39%  Similarity=0.620  Sum_probs=37.2

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHH
Q ss_conf             68669967988868999999999707877971434101212234310134
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI  102 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~  102 (437)
                      |+=|+++||||||||-||=.||+.++...+.+|.-.+    |-|-|+++.
T Consensus         4 ~~ii~i~GpTasGKs~la~~la~~~~~eIIsaDS~Qv----Yk~l~IgTa   49 (304)
T PRK00091          4 PKLIVLVGPTASGKTALAIELAKRLNGEIISVDSMQV----YRGMDIGTA   49 (304)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHH----HCCCCEEEC
T ss_conf             9779998988658999999999987998994126887----499986889


No 167
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.71  E-value=3.7e-05  Score=52.81  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=28.9

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf             686699679888689999999997078779714
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE   85 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~d   85 (437)
                      +.=|++.|++|||||.+++.||+.++.||+-.|
T Consensus         8 ~~iiVVMGVsGsGKSTig~~LA~~l~~~fiegD   40 (177)
T PRK11545          8 HHIYVLMGVSGSGKSAVASAVAHQLHAAFLDGD   40 (177)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf             759999847989999999999998199855365


No 168
>KOG0736 consensus
Probab=97.71  E-value=2.9e-05  Score=53.54  Aligned_cols=37  Identities=32%  Similarity=0.601  Sum_probs=35.0

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf             6699679888689999999997078779714341012
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE   91 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE   91 (437)
                      -+||-||||||||.+.++.|++++.+|+.+||.+|+-
T Consensus       433 ~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~  469 (953)
T KOG0736         433 SVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVA  469 (953)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHH
T ss_conf             7998679998757999999998387257013898864


No 169
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=97.70  E-value=1.9e-05  Score=54.68  Aligned_cols=45  Identities=31%  Similarity=0.457  Sum_probs=35.2

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCE--EEEECCCEEECCCCCCCHHHH
Q ss_conf             967988868999999999707877--971434101212234310134
Q gi|254780829|r   58 LVGPTGVGKTAISRRLARLAGAPF--IKVEVTKFTEIGYVGRNVEQI  102 (437)
Q Consensus        58 LiGPtGtGKTlLAktLA~~l~VPF--~~~daT~ftE~gyvG~DVes~  102 (437)
                      |+||||||||-|-+.|||+-..-+  +..|+++.|++--.-+.|+.+
T Consensus         1 LLGpSGcGKTTlLrlLAGf~~pd~G~i~ldg~d~~~vPp~~R~in~v   47 (331)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTEVPPHLRSINMV   47 (331)
T ss_pred             CCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCE
T ss_conf             97888874799999983458777550775671012157220614605


No 170
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.67  E-value=5.4e-05  Score=51.79  Aligned_cols=77  Identities=29%  Similarity=0.390  Sum_probs=51.1

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             56686699679888689999999997078779714341012122343101346788876521278998565498888688
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA  130 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~  130 (437)
                      ..|+++++.||+|||||++++.+|.+ +.+|...++.... ..|+|...    .+++..+......++..++.++++...
T Consensus        16 ~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~a~~~~~~ii~~d~~~~~~   89 (494)
T COG0464          16 EPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGESE----LRLRELFEEAEKLAPSIIFIDEIDALA   89 (494)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCCCCCCHHH-HHHCCHHH----HHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             76421000368876503665676512-5410135652243-22205108----999999899986397636404433212


Q ss_pred             HHH
Q ss_conf             875
Q gi|254780829|r  131 EER  133 (437)
Q Consensus       131 ~~~  133 (437)
                      .++
T Consensus        90 ~~~   92 (494)
T COG0464          90 PKR   92 (494)
T ss_pred             CCC
T ss_conf             344


No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.67  E-value=6.9e-05  Score=51.11  Aligned_cols=99  Identities=23%  Similarity=0.354  Sum_probs=54.0

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEE-------EEECCCEE-ECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970---78779-------71434101-212234310134678887652127899856
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFI-------KVEVTKFT-EIGYVGRNVEQIIRDLVDVAINIVRESRRD  120 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~-------~~daT~ft-E~gyvG~DVes~i~~l~~~a~~~~~~a~~~  120 (437)
                      .|+|.+|+|.||||||-|+.-||...   +||-.       ..|.+.+. -+.|-| +-|.-+..+++....   ....+
T Consensus       206 ~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~LiAGtkyRG-efEeRlk~vi~e~~~---~~~~I  281 (758)
T PRK11034        206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG-DFEKRFKALLKQLEQ---DTNSI  281 (758)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCH-HHHHHHHHHHHHHHH---CCCEE
T ss_conf             25896021699986999999999999738997655898899845877861686415-499999999999985---79859


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf             549888868887555531143211004668988986168
Q gi|254780829|r  121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE  159 (437)
Q Consensus       121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  159 (437)
                      .|++++-     .+.+++.+..+..+..+.+-..|..++
T Consensus       282 LFIDEiH-----~ivGaG~~~gg~~DaaNlLKP~LarG~  315 (758)
T PRK11034        282 LFIDEIH-----TIIGAGAASGGQVDAANLIKPLLSSGK  315 (758)
T ss_pred             EEEECHH-----HHCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             9980434-----422688767776467887457874697


No 172
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.66  E-value=0.00013  Score=49.22  Aligned_cols=62  Identities=19%  Similarity=0.330  Sum_probs=44.9

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCEEEC
Q ss_conf             3048689999999999877886408644446656686699679888689999999997---0787797143410121
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL---AGAPFIKVEVTKFTEI   92 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~---l~VPF~~~daT~ftE~   92 (437)
                      .+||+..+-+.+---+    +|...        ..+.||+.|.|||||.++||++=..   .+-||+.++|..+.+.
T Consensus       205 ~iig~S~~m~~v~~~a----~r~A~--------~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~  269 (513)
T PRK10820        205 QIVAVSPKMKHVVEQA----RKLAM--------LSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPED  269 (513)
T ss_pred             HHEECCHHHHHHHHHH----HHHHC--------CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
T ss_conf             7510899999999999----99859--------89988998989824999999999668878998268889989967


No 173
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.66  E-value=0.0001  Score=49.99  Aligned_cols=84  Identities=14%  Similarity=0.231  Sum_probs=54.5

Q ss_pred             CCCCCCCCC--EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             255433451--268861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r  312 LLPEIQGRF--PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL  389 (437)
Q Consensus       312 lipE~~GR~--p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L  389 (437)
                      ..|.+.-|+  -..+.+++++.+.+..||..           .++..++  .++++.++.|++.-- +       -.|.|
T Consensus       140 ~l~dL~SRl~~~~~~~I~~pdd~~~~~iL~k-----------~~~~r~i--~i~~~vi~yl~~r~~-R-------~~~~l  198 (226)
T TIGR03420       140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQS-----------RAARRGL--QLPDEVADYLLRHGS-R-------DMGSL  198 (226)
T ss_pred             CHHHHHHHHHCCCEEECCCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCC-C-------CHHHH
T ss_conf             0177999996885685279999999999999-----------9998599--889999999998637-9-------89999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHH
Q ss_conf             9999998677621275687768998599999899
Q gi|254780829|r  390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI  423 (437)
Q Consensus       390 rtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l  423 (437)
                      ..+++++-...+-     ..+  .||-..|++-|
T Consensus       199 ~~~l~~Ld~~sl~-----~kr--~ITi~l~kevL  225 (226)
T TIGR03420       199 MALLDALDRASLA-----AKR--KITIPFVKEVL  225 (226)
T ss_pred             HHHHHHHHHHHHH-----HCC--CCCHHHHHHHH
T ss_conf             9999999999998-----089--99999999984


No 174
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.64  E-value=5.5e-05  Score=51.71  Aligned_cols=32  Identities=34%  Similarity=0.668  Sum_probs=30.1

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             66996798886899999999970787797143
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      ||.|+||+|||||-+.|.||+.++.||+-.|.
T Consensus         2 ~I~LiG~mGaGKTtvGr~LA~~L~~~FvD~D~   33 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRISEVLDLQFIDMDE   33 (488)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf             49998999998779999999983979564779


No 175
>CHL00026 ycf2 Ycf2
Probab=97.63  E-value=7.6e-05  Score=50.83  Aligned_cols=40  Identities=33%  Similarity=0.590  Sum_probs=36.8

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf             6686699679888689999999997078779714341012
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE   91 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE   91 (437)
                      .++|||+|||.|||.-+|+|.||.-.=|||+.+.-.+|-.
T Consensus      1629 pSkGILlIGsieTGRSYLVK~LAanSYvPlI~I~lnklL~ 1668 (2286)
T CHL00026       1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2286)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECHHHHHC
T ss_conf             7675279788766668999987742637408963899841


No 176
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.63  E-value=0.00011  Score=49.87  Aligned_cols=40  Identities=30%  Similarity=0.515  Sum_probs=34.0

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCEEEC
Q ss_conf             686699679888689999999997---0787797143410121
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARL---AGAPFIKVEVTKFTEI   92 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~---l~VPF~~~daT~ftE~   92 (437)
                      ..+||+.|.|||||+++|+++-..   .+-||+.++|..+.+.
T Consensus       348 ~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~  390 (639)
T PRK11388        348 SFPILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDE  390 (639)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHH
T ss_conf             9968988989810999999999557778998189878989846


No 177
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.63  E-value=0.001  Score=43.57  Aligned_cols=66  Identities=24%  Similarity=0.410  Sum_probs=43.2

Q ss_pred             HHHCEECHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECCC
Q ss_conf             620304868999-9999999877886408644446656686-6996798886899999999970-----78779714341
Q gi|254780829|r   16 LDRYIIGQQDAK-RAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLA-----GAPFIKVEVTK   88 (437)
Q Consensus        16 Ld~~VvGQ~~AK-k~lavav~nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l-----~VPF~~~daT~   88 (437)
                      .|.||||....- -+.|.+|       .-..+     .+-| +.+.||+|.|||.|.+|+|.++     +.-.+++.+-.
T Consensus       118 FdnFVvG~sN~lA~aAA~~V-------a~~pg-----~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~  185 (447)
T PRK00149        118 FDNFVVGKSNRLAHAAALAV-------AENPG-----KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEK  185 (447)
T ss_pred             CCCCEECCCCHHHHHHHHHH-------HHCCC-----CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHH
T ss_conf             32622269859999999999-------83767-----6778558977998878899999999999858997289954999


Q ss_pred             EEECC
Q ss_conf             01212
Q gi|254780829|r   89 FTEIG   93 (437)
Q Consensus        89 ftE~g   93 (437)
                      |+.-+
T Consensus       186 F~~~~  190 (447)
T PRK00149        186 FTNDF  190 (447)
T ss_pred             HHHHH
T ss_conf             99999


No 178
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.62  E-value=0.00037  Score=46.36  Aligned_cols=12  Identities=92%  Similarity=1.365  Sum_probs=5.6

Q ss_pred             EEEECCCCCCHH
Q ss_conf             699679888689
Q gi|254780829|r   56 ILLVGPTGVGKT   67 (437)
Q Consensus        56 iLLiGPtGtGKT   67 (437)
                      +.|+||||+|||
T Consensus       197 i~lvGPTGVGKT  208 (282)
T TIGR03499       197 IALVGPTGVGKT  208 (282)
T ss_pred             EEEECCCCCCHH
T ss_conf             999778887578


No 179
>PRK08903 hypothetical protein; Validated
Probab=97.62  E-value=0.00015  Score=48.88  Aligned_cols=85  Identities=13%  Similarity=0.153  Sum_probs=53.6

Q ss_pred             CCCCCCCCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             2554334512--68861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r  312 LLPEIQGRFP--VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL  389 (437)
Q Consensus       312 lipE~~GR~p--~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L  389 (437)
                      +.|.+.-|+-  ..+.+++++.+.+..||.           ..+...|+  ..+++.++.|++.--.        -.|.|
T Consensus       138 ~~~DL~SRl~~gl~~~i~~pdde~~~~iL~-----------~~a~~rgl--~l~~~v~~yl~~r~~R--------~~~~L  196 (227)
T PRK08903        138 VREDLRTRLGWGLVYEVKPLSDEDKIAALK-----------AAAAERGL--QLADEVPDYLLTHFRR--------DMPSL  196 (227)
T ss_pred             CCHHHHHHHHCCCEEEEECCCHHHHHHHHH-----------HHHHHCCC--CCCHHHHHHHHHHHCC--------CHHHH
T ss_conf             008999999389738997979999999999-----------99996299--9988999999998347--------89999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHH
Q ss_conf             99999986776212756877689985999998999
Q gi|254780829|r  390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG  424 (437)
Q Consensus       390 rtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~  424 (437)
                      ..+++++-.....     ..  -.||-..|++.|+
T Consensus       197 ~~~l~~Ld~~sl~-----~k--r~iTi~lvkevLa  224 (227)
T PRK08903        197 MALLDALDRYSLE-----QK--RAVTLPLLREMLA  224 (227)
T ss_pred             HHHHHHHHHHHHH-----CC--CCCCHHHHHHHHC
T ss_conf             9999999999998-----29--9999999999855


No 180
>PRK09087 hypothetical protein; Validated
Probab=97.60  E-value=0.00013  Score=49.25  Aligned_cols=55  Identities=29%  Similarity=0.582  Sum_probs=39.2

Q ss_pred             HHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             98620304868999999999987788640864444665668-6699679888689999999997078779
Q gi|254780829|r   14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAGAPFI   82 (437)
Q Consensus        14 ~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~   82 (437)
                      .-+|.|+||....   .|+++-..|     +.      -|+ .+.|.||+|||||.|++..++..+..++
T Consensus        18 ~~~dnF~vs~~N~---~a~~~l~~~-----~~------w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a~~~   73 (226)
T PRK09087         18 YGRDDLVVTESNR---AAVSLVDRW-----PN------WPSPVVVLAGPVGSGKTHLASIWREKADALLV   73 (226)
T ss_pred             CCCCCEEECCCHH---HHHHHHHHC-----CC------CCCCEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf             8733647757699---999999847-----26------77775899899999886999999998099683


No 181
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.59  E-value=7.9e-05  Score=50.71  Aligned_cols=46  Identities=35%  Similarity=0.633  Sum_probs=38.0

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHH
Q ss_conf             68669967988868999999999707877971434101212234310134
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI  102 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~  102 (437)
                      |+=++++|||+||||-||=.||+.+|.+.+++|.-   |+ |-|=|+++.
T Consensus         3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm---Qv-Yr~mdIGTA   48 (308)
T COG0324           3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM---QV-YRGLDIGTA   48 (308)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHH---HH-CCCCCCCCC
T ss_conf             63799989887577899999999829928930235---53-188863079


No 182
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.58  E-value=6.7e-05  Score=51.18  Aligned_cols=30  Identities=30%  Similarity=0.514  Sum_probs=27.9

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             669967988868999999999707877971
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      ||+|+||||+||+-.|+.||+..++|.++.
T Consensus         2 ~iillGpPGsGKgT~a~~l~~~~~~~hiSt   31 (225)
T PTZ00088          2 KIVLFGAPGVGKGTFAEILSKKEKLKHINM   31 (225)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCEEECH
T ss_conf             799989999987999999999879906878


No 183
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.57  E-value=7e-05  Score=51.05  Aligned_cols=29  Identities=34%  Similarity=0.683  Sum_probs=26.1

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf             66996798886899999999970787797
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAPFIK   83 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~   83 (437)
                      +|+|+||||+||+..|+.||+..+.+.++
T Consensus         2 ~iillG~PGsGKgTqa~~la~~~~~~~is   30 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS   30 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf             79998999998799999999986991786


No 184
>KOG2680 consensus
Probab=97.54  E-value=7e-05  Score=51.06  Aligned_cols=67  Identities=24%  Similarity=0.432  Sum_probs=53.1

Q ss_pred             HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCCEEEEECCCEE
Q ss_conf             862030486899999999998778864086444466566866996798886899999999970--7877971434101
Q gi|254780829|r   15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA--GAPFIKVEVTKFT   90 (437)
Q Consensus        15 ~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l--~VPF~~~daT~ft   90 (437)
                      |-.+-.|||-.|.|+..|-+    +=++-..     |--.-+|+-||||+|||-||=.+|+.+  ++||..+.||+.-
T Consensus        37 ~~s~GmVGQ~~AR~Aagvi~----kmi~egk-----iaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~  105 (454)
T KOG2680          37 YVSEGMVGQVKARKAAGVIL----KMIREGK-----IAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIY  105 (454)
T ss_pred             CCCCCCHHHHHHHHHHHHHH----HHHHCCC-----CCCEEEEEECCCCCCCEEEEEEHHHHHCCCCCEEEEECCEEE
T ss_conf             32666311588888767999----9987286-----321389972489888441000024540788750365022222


No 185
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.52  E-value=0.00017  Score=48.48  Aligned_cols=62  Identities=27%  Similarity=0.471  Sum_probs=48.3

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf             30486899999999998778864086444466566866996798886899999999970---787797143410121
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI   92 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~   92 (437)
                      -+|||..|-+.+--.|-    .+.        --.++||+.|-|||||-+.||++-+..   +-||+++.|..+-|.
T Consensus       224 ~iIG~S~am~~ll~~i~----~VA--------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes  288 (550)
T COG3604         224 GIIGRSPAMRQLLKEIE----VVA--------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES  288 (550)
T ss_pred             CCCCCCHHHHHHHHHHH----HHH--------CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHH
T ss_conf             62306999999999999----872--------689807984588853899999998737555798666312225378


No 186
>PRK05642 DNA replication initiation factor; Validated
Probab=97.52  E-value=0.00018  Score=48.37  Aligned_cols=85  Identities=15%  Similarity=0.282  Sum_probs=50.8

Q ss_pred             CCCCCCCCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             2554334512--68861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r  312 LLPEIQGRFP--VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL  389 (437)
Q Consensus       312 lipE~~GR~p--~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L  389 (437)
                      ..|.+.-|+-  ..+.+++++.+++.++|..           .....|+  ..+++.++.|++.--.        --|.|
T Consensus       147 ~l~DL~SRl~~~~~~~i~~l~d~~~~~iL~~-----------~a~~rgi--~l~~~v~~yl~~r~~R--------~~~~L  205 (234)
T PRK05642        147 KLPDLKSRLTLALVFQMRGLSDEDKLRALQL-----------RASRRGL--HLTDEVGHFILTRGTR--------SMSAL  205 (234)
T ss_pred             CHHHHHHHHHCCCEEEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCCC--------CHHHH
T ss_conf             0167999995781275148998999999999-----------9775468--9998999999997358--------89999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHH
Q ss_conf             99999986776212756877689985999998999
Q gi|254780829|r  390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG  424 (437)
Q Consensus       390 rtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~  424 (437)
                      ..+++++- ..+..      .+-.||-..|++.++
T Consensus       206 ~~~l~~Ld-~~sl~------~kr~iTiplvk~vLg  233 (234)
T PRK05642        206 FDLLERLD-QASLQ------AQRKLTIPFLKETLG  233 (234)
T ss_pred             HHHHHHHH-HHHHH------HCCCCCHHHHHHHHC
T ss_conf             99999999-99998------389999999999838


No 187
>KOG0741 consensus
Probab=97.52  E-value=0.00037  Score=46.35  Aligned_cols=31  Identities=42%  Similarity=0.783  Sum_probs=29.1

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             8669967988868999999999707877971
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      ..+||-||||+|||-||-++|...+-||+++
T Consensus       539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKi  569 (744)
T KOG0741         539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKI  569 (744)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             5899866998876889999975279984797


No 188
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.51  E-value=9.5e-05  Score=50.19  Aligned_cols=28  Identities=50%  Similarity=0.822  Sum_probs=24.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf             6996798886899999999970787797
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIK   83 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~   83 (437)
                      |+|+||||||||..|+.||+..+++.++
T Consensus         2 i~l~G~PGsGKgTqa~~La~~~~~~~is   29 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHIS   29 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf             8998999998799999999997984676


No 189
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.51  E-value=0.00012  Score=49.61  Aligned_cols=30  Identities=37%  Similarity=0.841  Sum_probs=25.4

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf             866996798886899999999970787797
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGAPFIK   83 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~   83 (437)
                      .+|+++||||+|||-+|+.||+.++.|=+.
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~~~i~hls   30 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKKLGLPHLD   30 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCEEC
T ss_conf             979998999998899999999976997855


No 190
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.49  E-value=9.8e-05  Score=50.09  Aligned_cols=33  Identities=36%  Similarity=0.406  Sum_probs=27.8

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEE
Q ss_conf             66866996798886899999999970---7877971
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKV   84 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~   84 (437)
                      .|+|.+|+|.||||||-|+.-||...   +||-.-.
T Consensus       207 ~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~  242 (852)
T TIGR03345       207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR  242 (852)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             479974657999879999999999997699986774


No 191
>PRK06921 hypothetical protein; Provisional
Probab=97.46  E-value=0.00011  Score=49.69  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=23.5

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ...|++|+|+||+|||.||-++|+++
T Consensus       115 ~~~~l~f~G~~G~GKThLa~aIa~~L  140 (265)
T PRK06921        115 RKNSIALLGQPGSGKTHLLTAAANEL  140 (265)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             76627997289898899999999999


No 192
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44  E-value=0.0015  Score=42.48  Aligned_cols=33  Identities=45%  Similarity=0.691  Sum_probs=19.8

Q ss_pred             CCEEEECCCCCCHHHHHHHHH-HHH------CCCEEEEEC
Q ss_conf             866996798886899999999-970------787797143
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLA-RLA------GAPFIKVEV   86 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA-~~l------~VPF~~~da   86 (437)
                      +-|.|+||||||||-..=-|| ++.      .|-++.+|.
T Consensus       211 ~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~Dt  250 (412)
T PRK05703        211 GVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDT  250 (412)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             3699988888756769999999999972998179998376


No 193
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=97.43  E-value=5.8e-05  Score=51.60  Aligned_cols=46  Identities=30%  Similarity=0.543  Sum_probs=27.6

Q ss_pred             HHHHHHHHH-----HHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHH
Q ss_conf             999998778-----86408644446656686-69967988868999999999
Q gi|254780829|r   30 VAIALRNRW-----RRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLAR   75 (437)
Q Consensus        30 lavav~nhy-----~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~   75 (437)
                      ++|.=-|||     .|.|+=-+..-+|.|-= |||.||||||||-|--=+.+
T Consensus         2 i~i~~LnHyyG~G~~rkQvL~di~L~i~~GEiViltGPSGSGKTTLLtLiG~   53 (220)
T TIGR02982         2 ISIRNLNHYYGEGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGG   53 (220)
T ss_pred             EEECCCCCEECCCCCCCEEECCCCEEECCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             5623344111468742100127631771764798437889846889998876


No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.42  E-value=3.1e-05  Score=53.38  Aligned_cols=69  Identities=38%  Similarity=0.612  Sum_probs=57.6

Q ss_pred             HHHHHHHHHCCCCCHHCCCCCCCC--CCCCCCCHHHHHHHCCCCCCCCCC-----------CCCCCCCHHHHHHCCCCCC
Q ss_conf             875322210022210013576656--543321012234320466522112-----------4666420246640167542
Q gi|254780829|r  240 MVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAFHV  306 (437)
Q Consensus       240 ~~~~~~~~f~~~~~ki~~~~~~~~--~~~~~~g~~~~~~~~~e~~~v~~~-----------~~~~~~~~~~~i~~~~~~~  306 (437)
                      .....|+.++|++|||+.++...+  .|+|.+|+|+.++.++|++..++-           +..+.|.+++|||.|||.-
T Consensus       159 ~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~G  238 (408)
T COG1219         159 ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAG  238 (408)
T ss_pred             HHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCC
T ss_conf             88828859985102542057898723436735899999999707510239998887984204887376346782440103


Q ss_pred             CC
Q ss_conf             21
Q gi|254780829|r  307 SR  308 (437)
Q Consensus       307 ~k  308 (437)
                      +-
T Consensus       239 le  240 (408)
T COG1219         239 LE  240 (408)
T ss_pred             HH
T ss_conf             99


No 195
>CHL00178 consensus
Probab=97.42  E-value=0.0003  Score=46.96  Aligned_cols=40  Identities=33%  Similarity=0.590  Sum_probs=36.6

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf             6686699679888689999999997078779714341012
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE   91 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE   91 (437)
                      ..+|||+|||.|||.-+|+|.||.-.=|||+.+.-.+|-.
T Consensus      1457 pSkGILlIGsigTGRSYLVKsLAanSYvPlI~I~lnK~L~ 1496 (2133)
T CHL00178       1457 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1496 (2133)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEECHHHHHC
T ss_conf             6676379787766668999887642537518950788734


No 196
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.41  E-value=0.00011  Score=49.68  Aligned_cols=48  Identities=35%  Similarity=0.595  Sum_probs=40.0

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             0486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      ||||+.-.++|+-|+-+.             .+....||.||=|||||-+||.+|+-++-.
T Consensus        18 vvGQe~v~~~L~nal~~~-------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~   65 (515)
T COG2812          18 VVGQEHVVKTLSNALENG-------------RIAHAYLFSGPRGVGKTTIARILAKALNCE   65 (515)
T ss_pred             HCCCHHHHHHHHHHHHHC-------------CCHHHHHHCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             636489999999999808-------------423336513777767104999999995688


No 197
>PRK02496 adk adenylate kinase; Provisional
Probab=97.41  E-value=0.00014  Score=49.09  Aligned_cols=29  Identities=31%  Similarity=0.555  Sum_probs=24.9

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             86699679888689999999997078779
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGAPFI   82 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~   82 (437)
                      +.|+|+|||||||+..|+.||+..+.+-+
T Consensus         2 ~riillG~PGSGKgTqa~~L~~~~~~~hi   30 (185)
T PRK02496          2 ARLIFLGPPGAGKGTQAVVLAEHLQIPHI   30 (185)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf             18999799999989999999999699778


No 198
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.39  E-value=0.00033  Score=46.64  Aligned_cols=41  Identities=27%  Similarity=0.543  Sum_probs=35.8

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf             66866996798886899999999970---787797143410121
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI   92 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~   92 (437)
                      ...+||..|.|||||.++||+|-+..   +-||+.+.|..++|-
T Consensus       163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~  206 (464)
T COG2204         163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN  206 (464)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHH
T ss_conf             79978997789875899999998607445899256334648988


No 199
>KOG0745 consensus
Probab=97.39  E-value=3.5e-05  Score=53.00  Aligned_cols=71  Identities=48%  Similarity=0.597  Sum_probs=57.8

Q ss_pred             HHHHHHHHCCCCCHHCCCCC--CCCCCCCCCCHHHHHHHCCCCCCCCC--C---------CCCCCCCHHHHHHCCCCCCC
Q ss_conf             75322210022210013576--65654332101223432046652211--2---------46664202466401675422
Q gi|254780829|r  241 VENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVST--K---------YGSINTDHILFIASGAFHVS  307 (437)
Q Consensus       241 ~~~~~~~f~~~~~ki~~~~~--~~~~~~~~~g~~~~~~~~~e~~~v~~--~---------~~~~~~~~~~~i~~~~~~~~  307 (437)
                      -.+.||+|+|++|||+....  ..+.|++.+|+|+.++.++|++.|.+  +         ...+.|..|+||+.|||..+
T Consensus       289 kAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~L  368 (564)
T KOG0745         289 KAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGL  368 (564)
T ss_pred             HHHCCEEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCH
T ss_conf             88267388760124413676545444566266999999985262770267787778999858971366688803432356


Q ss_pred             CCCC
Q ss_conf             1121
Q gi|254780829|r  308 RPAD  311 (437)
Q Consensus       308 k~~g  311 (437)
                      -..+
T Consensus       369 dk~I  372 (564)
T KOG0745         369 DKII  372 (564)
T ss_pred             HHHH
T ss_conf             9898


No 200
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.37  E-value=0.002  Score=41.66  Aligned_cols=58  Identities=22%  Similarity=0.457  Sum_probs=36.4

Q ss_pred             CCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE---EECHHHHHHHHHHHH
Q ss_conf             25543345126-88615542467888764346889999999987---519689---984249999999999
Q gi|254780829|r  312 LLPEIQGRFPV-RVHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL---DFTEDSIDALADVAV  375 (437)
Q Consensus       312 lipE~~GR~p~-~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L---~ft~~Al~~IA~~A~  375 (437)
                      +.|. .|++-+ -..+..++.+++++-.     +++.|-..+|.   .||+.+   .+|++.+.+.++.|-
T Consensus       399 ~~p~-~G~I~i~g~di~~i~~~~lr~~i-----~~V~Q~~~LF~~TI~eNI~~g~~~atdeei~~A~~~a~  463 (588)
T PRK11174        399 FLPY-QGSLKINGIELRELDPESWRKHL-----SWVGQNPQLFHGTLRDNVLLANPDASDEQLQQALENAW  463 (588)
T ss_pred             HCCC-CCEEEECCEECCCCCHHHHHHHE-----EEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             2898-83899999860308999999660-----35166677776629986533585433457999999862


No 201
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.37  E-value=5.5e-05  Score=51.72  Aligned_cols=42  Identities=26%  Similarity=0.472  Sum_probs=27.3

Q ss_pred             CCCCCCE-EEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE
Q ss_conf             6566866-996798886899999999970787--79714341012
Q gi|254780829|r   50 ELMPKNI-LLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE   91 (437)
Q Consensus        50 e~~psNi-LLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE   91 (437)
                      .+.|.-+ -|+||||||||-|-|.||++-..-  -+..++...+-
T Consensus        27 ~i~~Gef~tlLGPSGcGKTTlLR~IAGfe~p~~G~I~l~g~~i~~   71 (352)
T COG3842          27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD   71 (352)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf             544886899989988888999999967778888659999999888


No 202
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.37  E-value=0.0004  Score=46.14  Aligned_cols=26  Identities=35%  Similarity=0.454  Sum_probs=23.6

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      .++|||..|+||+|||-|+++|+.+.
T Consensus       159 ~r~NilI~G~TgSGKTTll~aL~~~i  184 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALREI  184 (332)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf             48719998888988999999998358


No 203
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.36  E-value=0.00059  Score=45.04  Aligned_cols=48  Identities=27%  Similarity=0.387  Sum_probs=36.7

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             304868999999999987788640864444665668669967988868999999999707
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      .++|++++.+.+-..++.+=            -.|.-+|+.||+|+|||-+|.++|+.+.
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~------------~~~halL~~Gp~G~Gktt~a~~lA~~l~   49 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESG------------RLPHALLFYGPPGVGKTTAALALAKELL   49 (325)
T ss_pred             CCCCCHHHHHHHHHHHHHCC------------CCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             64332358999999998658------------8876100379999978999999999965


No 204
>PRK06217 hypothetical protein; Validated
Probab=97.35  E-value=0.00025  Score=47.44  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=30.9

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             866996798886899999999970787797143
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      +-|+.+|.+|+|||-||++||..+++|++..|.
T Consensus         2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~   34 (185)
T PRK06217          2 MRIHITGASGSGTTTLGAALAEALDLPHLDTDD   34 (185)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCC
T ss_conf             679997899887899999999975989686455


No 205
>CHL00179 consensus
Probab=97.35  E-value=0.0002  Score=48.03  Aligned_cols=46  Identities=28%  Similarity=0.437  Sum_probs=38.5

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEE--ECCCCCC
Q ss_conf             668669967988868999999999707877971434101--2122343
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT--EIGYVGR   97 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ft--E~gyvG~   97 (437)
                      ..+|||+|||.|||.-+|+|.||.-.=|||+.+.-.+|-  ..||+.+
T Consensus      1599 pSkGILvIGsigTGRSYLVK~LAanSYvPlI~I~lnK~L~~~~~~~~~ 1646 (2262)
T CHL00179       1599 PSRGILVIGFIGTGRSYFVKYRVTNSYVPFITVFPNKFLDDNKGYLID 1646 (2262)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCCCCC
T ss_conf             767627978776666899988764253751895177763358654456


No 206
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001    This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=97.33  E-value=0.00014  Score=49.17  Aligned_cols=27  Identities=41%  Similarity=0.700  Sum_probs=23.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC-----CCEE
Q ss_conf             69967988868999999999707-----8779
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG-----APFI   82 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~-----VPF~   82 (437)
                      +.|+|+.|||||.+|++||..++     ++|+
T Consensus         1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~yi   32 (175)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKYI   32 (175)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             96760278628899999999854315788756


No 207
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.32  E-value=0.0012  Score=43.16  Aligned_cols=19  Identities=53%  Similarity=0.833  Sum_probs=13.8

Q ss_pred             CCCCCE-EEECCCCCCHHHH
Q ss_conf             566866-9967988868999
Q gi|254780829|r   51 LMPKNI-LLVGPTGVGKTAI   69 (437)
Q Consensus        51 ~~psNi-LLiGPtGtGKTlL   69 (437)
                      +...+| .|+||||||||--
T Consensus       173 ~~~ggV~alVGPTGVGKTTT  192 (404)
T PRK06995        173 MERGGVFALVGPTGVGKTTT  192 (404)
T ss_pred             HCCCCEEEEECCCCCCHHHH
T ss_conf             11475589866888763758


No 208
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.31  E-value=0.00096  Score=43.66  Aligned_cols=61  Identities=34%  Similarity=0.407  Sum_probs=43.7

Q ss_pred             HHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             99998620304868999999999987788640864444665668669967988868999999999707877971
Q gi|254780829|r   11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        11 ~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      +++++|=+- ++-+.|||      |--|||++-..      .|.=||+=|+||+|||.+|--||..||.+-++.
T Consensus        60 ~~~~~l~~k-~~~e~a~r------Y~lwR~ir~~~------~p~IILIGGasGVGkStIA~ElA~rLgI~~vis  120 (299)
T COG2074          60 EVYQKLLEK-GDPEVAKR------YLLWRRIRKMK------RPLIILIGGASGVGKSTIAGELARRLGIRSVIS  120 (299)
T ss_pred             HHHHHHHHH-CCHHHHHH------HHHHHHHHCCC------CCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEC
T ss_conf             999999873-28799999------99999986157------875999617887772579999999729861004


No 209
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.31  E-value=0.00034  Score=46.56  Aligned_cols=35  Identities=26%  Similarity=0.436  Sum_probs=27.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEE
Q ss_conf             69967988868999999999707877971434101
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT   90 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ft   90 (437)
                      |+++||||+|||.|++.|.+...-.+++++.|+=.
T Consensus         4 ivl~GpsG~GK~tl~~~l~~~~~~~~~~vs~TTR~   38 (180)
T TIGR03263         4 IVISGPSGVGKSTLVKALLEEDPNLKFSISATTRK   38 (180)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             99989998899999999997689944887044689


No 210
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=97.31  E-value=0.0003  Score=46.96  Aligned_cols=32  Identities=38%  Similarity=0.453  Sum_probs=29.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             69967988868999999999707877971434
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVT   87 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT   87 (437)
                      .|.+||||+|||-+|=.||+..+.|.+++|.-
T Consensus         4 ~~I~GpT~~GKT~~ai~lA~~~g~~iis~D~~   35 (232)
T pfam01745         4 YLIWGATCTGKTAEAIALAKETGWPVIVLDRV   35 (232)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEECHH
T ss_conf             89978877771699999999959977962034


No 211
>pfam00493 MCM MCM2/3/5 family.
Probab=97.30  E-value=0.00047  Score=45.69  Aligned_cols=77  Identities=25%  Similarity=0.376  Sum_probs=51.0

Q ss_pred             HHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf             998620304868999999999987788640864-4446656686699679888689999999997078779714341012
Q gi|254780829|r   13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE   91 (437)
Q Consensus        13 ~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE   91 (437)
                      .+.+--.|-|.+..|+++..++.....+..-.. ..|.+   .||||+|-||||||-|.|.+++.+.- =+.+++..-|.
T Consensus        19 ~~siaP~i~G~~~vK~ai~l~l~gg~~~~~~~~~~~Rg~---ihiLLvGdPG~gKSqlLk~~~~~~pr-~~~tsg~~ss~   94 (327)
T pfam00493        19 ARSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRLRGD---INVLLVGDPGTAKSQLLKYVAKLAPR-AVYTSGKGSSA   94 (327)
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CEEEEECCCCCCHHHHHHHHHHHCCC-CEEECCCCCCC
T ss_conf             998597124987999999999808987658888620365---11898469981560999999986887-08831776656


Q ss_pred             CC
Q ss_conf             12
Q gi|254780829|r   92 IG   93 (437)
Q Consensus        92 ~g   93 (437)
                      +|
T Consensus        95 ~G   96 (327)
T pfam00493        95 AG   96 (327)
T ss_pred             CC
T ss_conf             77


No 212
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29  E-value=0.001  Score=43.55  Aligned_cols=21  Identities=57%  Similarity=0.964  Sum_probs=15.7

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             866996798886899999999970
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +-|.|+||||+|||-   |+||.+
T Consensus       224 kvi~lVGPTGVGKTT---TiAKLA  244 (432)
T PRK12724        224 KVVFFVGPTGSGKTT---SIAKLA  244 (432)
T ss_pred             EEEEEECCCCCCHHH---HHHHHH
T ss_conf             299998999988899---999999


No 213
>KOG3347 consensus
Probab=97.26  E-value=0.00032  Score=46.77  Aligned_cols=34  Identities=35%  Similarity=0.645  Sum_probs=29.9

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             5668669967988868999999999707877971
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      -...|||+.|-||||||.+|.+||...+.|++-+
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~i   38 (176)
T KOG3347           5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEI   38 (176)
T ss_pred             HCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEH
T ss_conf             1378879867999880259999999739856745


No 214
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.26  E-value=0.00028  Score=47.15  Aligned_cols=36  Identities=36%  Similarity=0.561  Sum_probs=30.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf             6996798886899999999970787797143410121
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI   92 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~   92 (437)
                      |-.-||||||||-+|+.||+.++.||+++ |+.|-|+
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl~~vsa-G~iFR~~   38 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGLKLVSA-GTIFREM   38 (179)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHCCCEEEC-CHHHHHH
T ss_conf             99617999970279999999829715621-2799999


No 215
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.24  E-value=0.00085  Score=44.02  Aligned_cols=35  Identities=34%  Similarity=0.616  Sum_probs=31.3

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             66866996798886899999999970787797143
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      .+.-|=|||..|+|||-+-|.||+.++.||+-.|.
T Consensus       132 ~~~rIaLIGlmGaGKSTvGr~LA~~Lg~pFvDlD~  166 (304)
T PRK08154        132 RRPRIALIGLRGAGKSTLGRMLAARLGVPFVELNR  166 (304)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf             77847988999998889999999995989778779


No 216
>PRK08727 hypothetical protein; Validated
Probab=97.24  E-value=0.00059  Score=45.04  Aligned_cols=85  Identities=21%  Similarity=0.384  Sum_probs=46.9

Q ss_pred             CCCCCCCCEE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             5543345126--88615542467888764346889999999987519689984249999999999840400123724679
Q gi|254780829|r  313 LPEIQGRFPV--RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ  390 (437)
Q Consensus       313 ipE~~GR~p~--~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~Lr  390 (437)
                      .|.+.-|+-.  .+.+++++.+.+..+|..           .+...|+  ..+++.++.|.+.-- +       --+.|.
T Consensus       144 l~DL~SRL~~~~~~~l~~~dD~~~~~iL~~-----------~a~~rgl--~l~~~V~~Yll~r~~-R-------~~~~l~  202 (233)
T PRK08727        144 LPDLRSRLSQCIRIGLPVLDDVARAAVLRD-----------RAQRRGL--ALDEAAIDWLLTHGE-R-------ELAGLV  202 (233)
T ss_pred             HHHHHHHHHCCCEEEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCC-C-------CHHHHH
T ss_conf             021999996692288578897999999999-----------9998699--999899999998568-8-------999999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHH
Q ss_conf             99999867762127568776899859999989999
Q gi|254780829|r  391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD  425 (437)
Q Consensus       391 tI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~  425 (437)
                      .+++++ ...+..    ..+  .||-..|++-+.+
T Consensus       203 ~~l~~L-D~~SL~----~kr--~iTip~vk~vL~e  230 (233)
T PRK08727        203 ALLDRL-DRESLA----AKR--RITVPFLRRVLEE  230 (233)
T ss_pred             HHHHHH-HHHHHH----CCC--CCCHHHHHHHHHH
T ss_conf             999999-999998----089--8889999999972


No 217
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582    To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=97.22  E-value=0.00024  Score=47.62  Aligned_cols=25  Identities=32%  Similarity=0.676  Sum_probs=22.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             6996798886899999999970787
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      .|+.||||||||-..|-|||+++.-
T Consensus       121 LLi~GPsGCgKsT~~k~LsKelg~~  145 (670)
T TIGR00602       121 LLITGPSGCGKSTTIKILSKELGIK  145 (670)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf             8841755884478999998886445


No 218
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.21  E-value=0.0032  Score=40.25  Aligned_cols=47  Identities=19%  Similarity=0.333  Sum_probs=21.6

Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE----EECHHHHHHHHHHHH
Q ss_conf             8615542467888764346889999999987---519689----984249999999999
Q gi|254780829|r  324 VHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL----DFTEDSIDALADVAV  375 (437)
Q Consensus       324 v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L----~ft~~Al~~IA~~A~  375 (437)
                      +.++.++.+++.+..     +.+.|-..+|.   -+|+.+    .+|++-+.+.++.|.
T Consensus       404 ~di~~~~~~~lr~~i-----~~V~Q~~~lF~~TI~eNi~~~~~~~~~~~~i~~a~~~a~  457 (581)
T PRK11176        404 HDLRDYTLASLRNQV-----ALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAY  457 (581)
T ss_pred             EEHHHCCHHHHHCCC-----CCCCCCCEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             851214766650345-----560777611077299997226743245689999999877


No 219
>KOG2170 consensus
Probab=97.18  E-value=0.00082  Score=44.12  Aligned_cols=61  Identities=28%  Similarity=0.403  Sum_probs=48.0

Q ss_pred             HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99999862030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ..+..-|++.+.||.-||..+--|+..||.--+-.+       |==.=|=|+|||||-+.++-||+-+
T Consensus        74 ~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~p~K-------PLvLSfHG~tGTGKN~Va~iiA~n~  134 (344)
T KOG2170          74 DGLEKDLARALFGQHLAKQLVVNALKSHWANPNPRK-------PLVLSFHGWTGTGKNYVAEIIAENL  134 (344)
T ss_pred             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCC-------CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             678999999863208799999999999862899998-------7589830899875648999999998


No 220
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.16  E-value=0.00074  Score=44.41  Aligned_cols=63  Identities=22%  Similarity=0.184  Sum_probs=47.7

Q ss_pred             CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf             76888999998620304868999999999987788640864444665668669967988868999999999707877
Q gi|254780829|r    5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF   81 (437)
Q Consensus         5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF   81 (437)
                      +.|++.-...|+=.-|||||.-|++|--..        .+.      .=.|+|+-|+-|+|||-++|+||..|..=-
T Consensus         4 ~~~~~~~r~~~pf~aivGqd~lk~aL~l~a--------v~P------~iggvLI~G~kGtaKSt~~Rala~LLp~~~   66 (423)
T COG1239           4 RTVSEEIRENLPFTAIVGQDPLKLALGLNA--------VDP------QIGGALIAGEKGTAKSTLARALADLLPEIE   66 (423)
T ss_pred             CCHHHHHHHCCCHHHHCCCHHHHHHHHHHH--------CCC------CCCEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf             215577775166565437537778876530--------263------104268766887527799999998679633


No 221
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB.  This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.16  E-value=0.0004  Score=46.11  Aligned_cols=27  Identities=41%  Similarity=0.537  Sum_probs=24.1

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             668669967988868999999999707
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ..+|||..||||+|||-+.++|+.+..
T Consensus        24 ~~~nIlIsG~tGSGKTTll~al~~~i~   50 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             599899989999989999999996133


No 222
>PRK06893 DNA replication initiation factor; Validated
Probab=97.16  E-value=0.0013  Score=42.91  Aligned_cols=84  Identities=15%  Similarity=0.286  Sum_probs=50.6

Q ss_pred             CCCCCCCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf             554334512--688615542467888764346889999999987519689984249999999999840400123724679
Q gi|254780829|r  313 LPEIQGRFP--VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ  390 (437)
Q Consensus       313 ipE~~GR~p--~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~Lr  390 (437)
                      .|.+.-|+-  ..+.+++++.+.+..||..           .++..|+  .++++.++.|++.--.        -.|.|-
T Consensus       143 l~DL~SRl~~~~~~~i~~~dd~~~~~iL~~-----------~a~~rgl--~l~~~v~~yl~~r~~R--------~~~~l~  201 (229)
T PRK06893        143 LPDLASRLTWGEIYQLNDLTDEQKIEVLQR-----------NAYQRGI--ELSDETANFLLKRLDR--------DMHTLF  201 (229)
T ss_pred             HHHHHHHHHCCEEEEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHHCC--------CHHHHH
T ss_conf             267999996883699667775799999999-----------9996499--9998999999998347--------899999


Q ss_pred             HHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHH
Q ss_conf             9999986776212756877689985999998999
Q gi|254780829|r  391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG  424 (437)
Q Consensus       391 tI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~  424 (437)
                      .+++++-.. +..    ..+  .||-..|++-++
T Consensus       202 ~~l~~Ld~~-sl~----~kr--~iTiplvkevL~  228 (229)
T PRK06893        202 DALDLLDKA-SLQ----AQR--KLTIPFVKEILG  228 (229)
T ss_pred             HHHHHHHHH-HHH----HCC--CCCHHHHHHHHC
T ss_conf             999999999-998----089--999999999868


No 223
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149   This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.16  E-value=0.00037  Score=46.34  Aligned_cols=26  Identities=54%  Similarity=0.772  Sum_probs=23.4

Q ss_pred             CCCCEEEECCCCCCHHHHHHHH-HHHH
Q ss_conf             6686699679888689999999-9970
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRL-ARLA   77 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktL-A~~l   77 (437)
                      -++|||.+|=||||||-||.|| |+.+
T Consensus       138 ar~NIlv~GGTGSGKTTLaNAlla~I~  164 (315)
T TIGR02782       138 ARKNILVVGGTGSGKTTLANALLAEIA  164 (315)
T ss_pred             HCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             129889981458857999999999885


No 224
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=97.15  E-value=0.00034  Score=46.62  Aligned_cols=32  Identities=25%  Similarity=0.489  Sum_probs=25.6

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC--CCEEEEEC
Q ss_conf             669967988868999999999707--87797143
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAG--APFIKVEV   86 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~--VPF~~~da   86 (437)
                      -|-.+||||||||-|+++|+|+++  -+=+..|+
T Consensus       389 r~Ai~G~SG~GKsTLL~~L~G~l~P~~G~vtl~G  422 (566)
T TIGR02868       389 RVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDG  422 (566)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECC
T ss_conf             0898668876578999999840289999178777


No 225
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=97.14  E-value=0.0033  Score=40.23  Aligned_cols=43  Identities=26%  Similarity=0.478  Sum_probs=35.0

Q ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCEEEC
Q ss_conf             6566866996798886899999999970-787797143410121
Q gi|254780829|r   50 ELMPKNILLVGPTGVGKTAISRRLARLA-GAPFIKVEVTKFTEI   92 (437)
Q Consensus        50 e~~psNiLLiGPtGtGKTlLAktLA~~l-~VPF~~~daT~ftE~   92 (437)
                      +-.|+=|+|-|+||+|||.+++.+...+ +-.++.+|+-+|-+.
T Consensus         9 ~~~Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~~r~~   52 (191)
T pfam06414         9 QERPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDELRTY   52 (191)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHH
T ss_conf             76987999957998888999999987537899389713587887


No 226
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.12  E-value=0.00089  Score=43.88  Aligned_cols=40  Identities=28%  Similarity=0.464  Sum_probs=29.7

Q ss_pred             CCCC--EEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCEEE
Q ss_conf             6686--69967988868999999999707877-9714341012
Q gi|254780829|r   52 MPKN--ILLVGPTGVGKTAISRRLARLAGAPF-IKVEVTKFTE   91 (437)
Q Consensus        52 ~psN--iLLiGPtGtGKTlLAktLA~~l~VPF-~~~daT~ftE   91 (437)
                      .++|  |+++||||+|||-|++.|.+...-.| +.+++|+=..
T Consensus         4 ~~~g~livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~p   46 (208)
T PRK00300          4 MRRGLLIVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRAP   46 (208)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC
T ss_conf             4188389999999889999999999729986899897468898


No 227
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=97.12  E-value=0.0005  Score=45.52  Aligned_cols=28  Identities=36%  Similarity=0.414  Sum_probs=23.6

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             6686699679888689999999997078
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      ..+|||..||||||||-+.+++..++.-
T Consensus       138 ~~~~ilIsG~TGSGKTT~l~all~~i~~  165 (283)
T pfam00437       138 ARGNILVSGGTGSGKTTLLYALLNEINT  165 (283)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             1975999889999889999999984087


No 228
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.11  E-value=0.0011  Score=43.32  Aligned_cols=84  Identities=17%  Similarity=0.194  Sum_probs=51.5

Q ss_pred             CCCCCCCCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             2554334512--68861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r  312 LLPEIQGRFP--VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL  389 (437)
Q Consensus       312 lipE~~GR~p--~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L  389 (437)
                      +.|.+.-|+-  .++.+++++.++...||..           .....|+  .++++.++.|++..-.        --|.|
T Consensus       148 ~l~DL~SRl~~g~~~~i~~~dde~~~~iL~~-----------~a~~rgl--~l~~~V~~yl~~~~~R--------~~~~L  206 (235)
T PRK08084        148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQL-----------RARLRGF--ELPEDVGRFLLKRLDR--------EMRTL  206 (235)
T ss_pred             CCHHHHHHHHCCCEEEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCCC--------CHHHH
T ss_conf             1288999995697278559998999999999-----------9997399--9998999999986158--------89999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHH
Q ss_conf             9999998677621275687768998599999899
Q gi|254780829|r  390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI  423 (437)
Q Consensus       390 rtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l  423 (437)
                      ..+++++-. .+.      ...-.||-..|++.+
T Consensus       207 ~~~l~~Ld~-~Sl------~~kr~iTip~vkevL  233 (235)
T PRK08084        207 FMTLDQLDK-ASI------TAQRKLTIPFVKEIL  233 (235)
T ss_pred             HHHHHHHHH-HHH------HCCCCCCHHHHHHHH
T ss_conf             999999999-999------819999999999996


No 229
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670   This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=97.10  E-value=0.00055  Score=45.27  Aligned_cols=49  Identities=29%  Similarity=0.563  Sum_probs=36.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCEEECCCCCCCHHHHHHHHHH
Q ss_conf             6996798886899999999970-7877971434101212234310134678887
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA-GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD  108 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l-~VPF~~~daT~ftE~gyvG~DVes~i~~l~~  108 (437)
                      -=|||||||||+-+-|+|=++- -||=++++|    ++-|-|+|+-+---++++
T Consensus        30 TAlIGPSGCGKSTlLR~lNRMnDl~~~~r~~G----~v~f~G~dIy~~~~D~~~   79 (248)
T TIGR00972        30 TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG----KVLFDGQDIYDKKIDVVE   79 (248)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE----EEEECCCCCCCCCCCHHH
T ss_conf             89877889867899999887764078816888----898645114565668788


No 230
>PRK13808 adenylate kinase; Provisional
Probab=97.10  E-value=0.0015  Score=42.46  Aligned_cols=30  Identities=30%  Similarity=0.595  Sum_probs=27.6

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             669967988868999999999707877971
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      ||+|+||||+||.-.|+.|++..+.|-++.
T Consensus         2 rIIlLGPPGsGKGTQA~~L~~~~gi~hIST   31 (297)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST   31 (297)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEECH
T ss_conf             599978999985899999999869886758


No 231
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.09  E-value=0.00046  Score=45.77  Aligned_cols=26  Identities=42%  Similarity=0.615  Sum_probs=23.6

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      .++|||..|+||||||-++++|..+.
T Consensus       161 ~r~NIlIsGgTGSGKTTllnALl~~I  186 (343)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAI  186 (343)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf             69889998889861999999999628


No 232
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.09  E-value=0.0029  Score=40.55  Aligned_cols=27  Identities=44%  Similarity=0.589  Sum_probs=19.7

Q ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf             665668669967988868999999999
Q gi|254780829|r   49 DELMPKNILLVGPTGVGKTAISRRLAR   75 (437)
Q Consensus        49 ~e~~psNiLLiGPtGtGKTlLAktLA~   75 (437)
                      .+..|+-|+|+||+|+|||--+=-||.
T Consensus        71 ~~~~~~vI~lvG~~G~GKTTT~AKLA~   97 (270)
T PRK06731         71 FEKEVQTIALIGPTGVGKTTTLAKMAW   97 (270)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             679981899988898988999999999


No 233
>PRK03839 putative kinase; Provisional
Probab=97.07  E-value=0.00063  Score=44.87  Aligned_cols=30  Identities=40%  Similarity=0.638  Sum_probs=25.9

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             669967988868999999999707877971
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      .|++.|.||||||-+|+.||..++..++.+
T Consensus         2 ~I~ITGTPGtGKTTva~~La~~lg~~~i~v   31 (180)
T PRK03839          2 IIAITGTPGVGKTTISKLLAEKLGYEYVNL   31 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCEEEEH
T ss_conf             899978999998999999999769879879


No 234
>TIGR00764 lon_rel ATP-dependent protease, putative; InterPro: IPR004663   Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases .   Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , .   Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins.   Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule.    This signature defines the archaeal lon protease homologs, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein conserved region.; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0030163 protein catabolic process.
Probab=97.06  E-value=0.00092  Score=43.80  Aligned_cols=84  Identities=18%  Similarity=0.244  Sum_probs=54.8

Q ss_pred             CCCHHHHHHCCCCCCCCCCCCCCCCCCCCE---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf             420246640167542211212554334512---68861554246788876434688999999998751968998424999
Q gi|254780829|r  292 NTDHILFIASGAFHVSRPADLLPEIQGRFP---VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID  368 (437)
Q Consensus       292 ~~~~~~~i~~~~~~~~k~~glipE~~GR~p---~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~  368 (437)
                      ..--+.|+.-.+-..-..+++-|-+..|+.   .-+.+...-.+.     .+-+..++.-..+....+|---.|+.+++.
T Consensus       281 ~p~pcdf~l~~~g~~~~~~~~~~~l~~~~~g~gy~~~~~~~~~~~-----~~~~~~l~~f~~~~~~~~g~~~~~~~~~~~  355 (662)
T TIGR00764       281 EPVPCDFILVASGNLDDLEGLHPALRSRIRGYGYEVYLKDTMPDT-----PENRDKLVQFVAQEVKKDGRLPHFTRDAVE  355 (662)
T ss_pred             CCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEECCCCCCC-----HHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf             566621445514654565410045665430144168872667775-----024789999999987624788864267899


Q ss_pred             HHHHHHHHHHCC
Q ss_conf             999999984040
Q gi|254780829|r  369 ALADVAVNLNST  380 (437)
Q Consensus       369 ~IA~~A~~~~t~  380 (437)
                      ++.+.|..+...
T Consensus       356 ~~~~~~~~~~g~  367 (662)
T TIGR00764       356 EIVREAQRRAGR  367 (662)
T ss_pred             HHHHHHHHHCCC
T ss_conf             999998862276


No 235
>PRK06620 hypothetical protein; Validated
Probab=97.06  E-value=0.00067  Score=44.69  Aligned_cols=60  Identities=22%  Similarity=0.396  Sum_probs=36.4

Q ss_pred             HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             86203048689999999999877886408644446656686699679888689999999997078779
Q gi|254780829|r   15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI   82 (437)
Q Consensus        15 ~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~   82 (437)
                      ..|.|+||-...   .|++.-..|     +..-......+.+++.||+|||||.|++..++..++-+.
T Consensus        14 ~~~dF~vs~~N~---~A~~~i~~w-----p~~~~~~~~~~~l~I~Gp~gSGKTHL~~i~~~~~~a~~~   73 (214)
T PRK06620         14 HPDEFIVSSSND---QAYNIIKNW-----QCMFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII   73 (214)
T ss_pred             CCCCEEECCCHH---HHHHHHHHC-----HHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf             865868768699---999999836-----302566865555999879999889999999998285881


No 236
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.06  E-value=0.0012  Score=42.98  Aligned_cols=99  Identities=24%  Similarity=0.322  Sum_probs=54.1

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEE--------CCCCCCCHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf             66866996798886899999999970---78779714341012--------12234310134678887652127899-85
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE--------IGYVGRNVEQIIRDLVDVAINIVRES-RR  119 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE--------~gyvG~DVes~i~~l~~~a~~~~~~a-~~  119 (437)
                      .|+|-+|+|+||+|||-++.-||.-.   +||=.-.+.+-|+=        +.|-|+=-+.+ ..+++.    ++++ ..
T Consensus       190 ~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRl-k~vl~e----v~~~~~v  264 (786)
T COG0542         190 TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERL-KAVLKE----VEKSKNV  264 (786)
T ss_pred             CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHHHHHCCCCCCCCHHHHH-HHHHHH----HHCCCCE
T ss_conf             88998476689888999998999997469999787588799714876746465357389999-999999----8517984


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf             65498888688875555311432110046689889861688
Q gi|254780829|r  120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI  160 (437)
Q Consensus       120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (437)
                      +.|++++     ..+.+++...++..+..+.+-..|-.+++
T Consensus       265 ILFIDEi-----HtiVGAG~~~g~a~DAaNiLKPaLARGeL  300 (786)
T COG0542         265 ILFIDEI-----HTIVGAGATEGGAMDAANLLKPALARGEL  300 (786)
T ss_pred             EEEEECH-----HHHCCCCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf             9998235-----54057776666651256646778745873


No 237
>PHA02244 ATPase-like protein
Probab=97.05  E-value=0.00076  Score=44.33  Aligned_cols=52  Identities=21%  Similarity=0.333  Sum_probs=39.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEE--ECCCEEECCCCCCCHHHHHHHHH
Q ss_conf             69967988868999999999707877971--43410121223431013467888
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKV--EVTKFTEIGYVGRNVEQIIRDLV  107 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~--daT~ftE~gyvG~DVes~i~~l~  107 (437)
                      |-|.||-|||||.+|+.+|+.|+.||...  =+++|--.||+-..-.-.-..++
T Consensus       122 V~L~G~AGsGKt~~A~qIA~aLdl~FYf~gAI~~ef~L~Gf~DAnG~yh~T~f~  175 (383)
T PHA02244        122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFY  175 (383)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCEECCCCCEECCHHH
T ss_conf             699758888634899999998588824413230134301256489967263899


No 238
>TIGR01351 adk adenylate kinases; InterPro: IPR006259    Most members of this family are known or believed to be adenylate kinase.   Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells  and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason.   ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.  ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.03  E-value=0.0006  Score=45.00  Aligned_cols=30  Identities=37%  Similarity=0.742  Sum_probs=27.8

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             669967988868999999999707877971
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      +++|+||||+||=-.|+.||+..+.|-++.
T Consensus         1 ~~~~lGpPGsGKGTQa~~i~~~~gl~HIST   30 (232)
T TIGR01351         1 RLILLGPPGSGKGTQAKRIAEKLGLPHIST   30 (232)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf             946755989876679999998608850202


No 239
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.03  E-value=0.00076  Score=44.34  Aligned_cols=34  Identities=41%  Similarity=0.659  Sum_probs=21.8

Q ss_pred             CCCEEEECCCCCCHHH-HHHHHHHHH------CCCEEEEEC
Q ss_conf             6866996798886899-999999970------787797143
Q gi|254780829|r   53 PKNILLVGPTGVGKTA-ISRRLARLA------GAPFIKVEV   86 (437)
Q Consensus        53 psNiLLiGPtGtGKTl-LAktLA~~l------~VPF~~~da   86 (437)
                      ++.|.|+||||+|||- |||-=|++.      .|-|++.|.
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt  243 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT  243 (407)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             85799989988758879999999997532576068997144


No 240
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03  E-value=0.00051  Score=45.48  Aligned_cols=27  Identities=44%  Similarity=0.621  Sum_probs=24.3

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             668669967988868999999999707
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      -.+|.|++||||||||-|.|-+|+.+.
T Consensus       136 g~lntLiigpP~~GKTTlLRdiaR~~s  162 (308)
T COG3854         136 GWLNTLIIGPPQVGKTTLLRDIARLLS  162 (308)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             722469965998870779999999863


No 241
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.02  E-value=0.0017  Score=41.99  Aligned_cols=22  Identities=55%  Similarity=0.730  Sum_probs=16.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      |+|+||||+|||--.=-||..+
T Consensus         3 i~lvGptGvGKTTTiaKLA~~~   24 (173)
T cd03115           3 ILLVGLQGVGKTTTAAKLALYL   24 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9998999998899999999999


No 242
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.01  E-value=0.0017  Score=42.14  Aligned_cols=26  Identities=35%  Similarity=0.563  Sum_probs=23.2

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      .++|||..|+||+|||-++++|..++
T Consensus       148 ~r~nilI~G~TgsGKTTll~all~~i  173 (320)
T PRK13894        148 AHRNILVIGGTGSGKTTLVNAIINEM  173 (320)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             28758998588865689999998632


No 243
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.01  E-value=0.0079  Score=37.73  Aligned_cols=47  Identities=19%  Similarity=0.228  Sum_probs=25.0

Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE--EECHHHHHHHHHHHH
Q ss_conf             8615542467888764346889999999987---519689--984249999999999
Q gi|254780829|r  324 VHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL--DFTEDSIDALADVAV  375 (437)
Q Consensus       324 v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L--~ft~~Al~~IA~~A~  375 (437)
                      +.++.++.+++.+..     +.+.|-..+|.   .+|+.+  .+|++.+.+.++.|-
T Consensus       403 ~di~~i~~~~lR~~i-----~~V~Q~~~LF~gTI~eNi~~g~~~~~~~i~~a~~~a~  454 (593)
T PRK10790        403 RPLSSLSHSVLRQGV-----AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQ  454 (593)
T ss_pred             EECCCCCHHHHHHCC-----CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             324424688886315-----7516665145652999977600236799999999977


No 244
>KOG0991 consensus
Probab=97.00  E-value=0.0013  Score=42.75  Aligned_cols=45  Identities=31%  Similarity=0.507  Sum_probs=37.4

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             30486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      -|||-++....|+|-...             .-. .|+++.||||||||--+..||++|
T Consensus        28 dIVGNe~tv~rl~via~~-------------gnm-P~liisGpPG~GKTTsi~~LAr~L   72 (333)
T KOG0991          28 DIVGNEDTVERLSVIAKE-------------GNM-PNLIISGPPGTGKTTSILCLAREL   72 (333)
T ss_pred             HHHCCHHHHHHHHHHHHC-------------CCC-CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             821779899999999972-------------899-866752799986164899999998


No 245
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.99  E-value=0.00049  Score=45.55  Aligned_cols=36  Identities=31%  Similarity=0.564  Sum_probs=26.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCCEEE
Q ss_conf             699679888689999999997078--779714341012
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGA--PFIKVEVTKFTE   91 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~V--PF~~~daT~ftE   91 (437)
                      +-|+||||||||-+-|.+|+....  =-+..++..-|.
T Consensus        32 ~vllGPSGcGKSTlLr~IAGLe~p~~G~I~i~g~~vt~   69 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD   69 (338)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf             99989998888999999968877887159999999998


No 246
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.96  E-value=0.0019  Score=41.76  Aligned_cols=23  Identities=52%  Similarity=0.723  Sum_probs=16.7

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf             68669967988868999999999
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLAR   75 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~   75 (437)
                      |.=|+|+||||+|||--+=-||.
T Consensus         1 P~vi~lvGptGvGKTTTiaKLAa   23 (196)
T pfam00448         1 PNVILLVGLQGSGKTTTIAKLAA   23 (196)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
T ss_conf             96999989999988999999999


No 247
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.93  E-value=0.0012  Score=43.01  Aligned_cols=34  Identities=38%  Similarity=0.600  Sum_probs=25.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCE
Q ss_conf             69967988868999999999707877-97143410
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPF-IKVEVTKF   89 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF-~~~daT~f   89 (437)
                      |+++||||+|||-|++.|.+...-.| +.+..|+=
T Consensus         2 ivi~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR   36 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTR   36 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf             99999998899999999985198776875660378


No 248
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=96.88  E-value=0.0015  Score=42.46  Aligned_cols=35  Identities=37%  Similarity=0.479  Sum_probs=25.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEE-EEECCCEE
Q ss_conf             699679888689999999997078779-71434101
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFI-KVEVTKFT   90 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~-~~daT~ft   90 (437)
                      |+|+||+|+|||.|++.|.+...--|. .++.|+=.
T Consensus         4 ivl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~   39 (182)
T pfam00625         4 IVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRP   39 (182)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf             999898999999999999984866734457655479


No 249
>KOG2543 consensus
Probab=96.87  E-value=0.0014  Score=42.64  Aligned_cols=44  Identities=25%  Similarity=0.367  Sum_probs=38.3

Q ss_pred             CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC-EE
Q ss_conf             446656686699679888689999999997078779714341-01
Q gi|254780829|r   47 LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTK-FT   90 (437)
Q Consensus        47 ~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~-ft   90 (437)
                      .++...||++.+.|-+|||||++.|++=+.+++|++.+.|-+ ||
T Consensus        24 ~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft   68 (438)
T KOG2543          24 NNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFT   68 (438)
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHHHHCC
T ss_conf             898666515799614787455999999860378630541577516


No 250
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.86  E-value=0.00088  Score=43.93  Aligned_cols=22  Identities=45%  Similarity=0.726  Sum_probs=14.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +|+.||+|||||.|-|+||+.=
T Consensus       422 llI~G~SG~GKTsLlRaiaGLW  443 (604)
T COG4178         422 LLITGESGAGKTSLLRALAGLW  443 (604)
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
T ss_conf             9987899987889999996458


No 251
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.86  E-value=0.0011  Score=43.39  Aligned_cols=27  Identities=33%  Similarity=0.635  Sum_probs=23.3

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf             669967988868999999999707877
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAPF   81 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VPF   81 (437)
                      =.||.||+|||||-..+.||++++.-.
T Consensus        47 iLlLtGPaG~GKTTTI~lLAkeLG~ei   73 (490)
T pfam03215        47 ILLLTGPSGCGKSTTVKVLSKELGIEI   73 (490)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf             899879899889999999999759689


No 252
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.85  E-value=0.001  Score=43.46  Aligned_cols=26  Identities=31%  Similarity=0.429  Sum_probs=23.6

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ..+|||..|+||+|||-|+++|..+.
T Consensus       143 ~r~nilVsGgTGSGKTTllnaL~~~i  168 (323)
T PRK13833        143 SRLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             18968999177775689999999864


No 253
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374    This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=96.82  E-value=0.00048  Score=45.64  Aligned_cols=50  Identities=8%  Similarity=-0.066  Sum_probs=25.1

Q ss_pred             EEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCC
Q ss_conf             0000010235533278886303101112367888753222100222100135
Q gi|254780829|r  207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR  258 (437)
Q Consensus       207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~  258 (437)
                      ..|+....-+++...+-+.||.+.  |..-=+.+--.+.+.......+.|+.
T Consensus       419 TGHLVlSTLHTNdAp~Tl~RL~NM--GiapFNIASSV~LI~AQRLARRLCs~  468 (577)
T TIGR02538       419 TGHLVLSTLHTNDAPETLARLVNM--GIAPFNIASSVNLIMAQRLARRLCSH  468 (577)
T ss_pred             CCCCEECCCCCCCHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             487210100016858999999753--84137999999999999755240313


No 254
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=96.81  E-value=0.0012  Score=43.12  Aligned_cols=55  Identities=31%  Similarity=0.522  Sum_probs=40.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCC----------CCHHHHHHHHHHHHHHHH
Q ss_conf             69967988868999999999707877971434101212234----------310134678887652127
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG----------RNVEQIIRDLVDVAINIV  114 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG----------~DVes~i~~l~~~a~~~~  114 (437)
                      |.++|||+||||-||=-||+.++|=.+.+|--.-    |-|          .+-+.+.++|++-.+...
T Consensus         2 i~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qi----YK~~dIgtaKp~~~e~~~ipH~l~Dildp~e   66 (307)
T TIGR00174         2 IVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQI----YKGMDIGTAKPSLQERKGIPHHLIDILDPSE   66 (307)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHH----HCCCCCCCCCCCHHHHCCCCCEEEECCCCCC
T ss_conf             6774088554778999988768957874350232----2378753578896875349815851347120


No 255
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.80  E-value=0.011  Score=36.78  Aligned_cols=46  Identities=28%  Similarity=0.385  Sum_probs=23.4

Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE---EECHHHHHHHHHHH
Q ss_conf             8615542467888764346889999999987---519689---98424999999999
Q gi|254780829|r  324 VHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL---DFTEDSIDALADVA  374 (437)
Q Consensus       324 v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L---~ft~~Al~~IA~~A  374 (437)
                      .++..++.+++++-.     +.+.|-..+|.   .||+.+   .+|++-+.+.++.|
T Consensus       377 ~di~~i~~~~lR~~I-----~~V~Q~~~LF~~TI~eNI~lg~~~~~~eei~~a~~~a  428 (569)
T PRK10789        377 IPLTKLQLDSWRSRL-----AVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLA  428 (569)
T ss_pred             EECCCCCHHHHHHCC-----CCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             013425768886314-----7658875025662999986579776545899999985


No 256
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=96.80  E-value=0.0011  Score=43.28  Aligned_cols=60  Identities=13%  Similarity=0.189  Sum_probs=44.3

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             866996798886899999999970787797143410121223431013467888765212
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI  113 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~  113 (437)
                      +.|+++||--||||-|++.||+..+.||+-==|=+|.|--+.|.+..--..++...|.+.
T Consensus       232 KkVvIlG~ESTGKTTL~~~LA~~ynT~~v~EYgReY~~ek~~~~e~~l~~~D~~~IA~gQ  291 (411)
T PRK08099        232 RTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEIALQYSDYDKIALGH  291 (411)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             689998999888899999999997899518989999999718974568888999999999


No 257
>pfam00406 ADK Adenylate kinase.
Probab=96.79  E-value=0.00081  Score=44.14  Aligned_cols=26  Identities=31%  Similarity=0.607  Sum_probs=23.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf             96798886899999999970787797
Q gi|254780829|r   58 LVGPTGVGKTAISRRLARLAGAPFIK   83 (437)
Q Consensus        58 LiGPtGtGKTlLAktLA~~l~VPF~~   83 (437)
                      ++|||||||+-.|+.||+..+++.++
T Consensus         1 i~G~PGsGKgTqa~~La~~~~~~~is   26 (186)
T pfam00406         1 LLGPPGAGKGTQAERIVQKYGIVHLS   26 (186)
T ss_pred             CCCCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf             91889898599999999985990676


No 258
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.79  E-value=0.0027  Score=40.79  Aligned_cols=36  Identities=31%  Similarity=0.428  Sum_probs=30.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEE
Q ss_conf             6996798886899999999970---78779714341012
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE   91 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE   91 (437)
                      |-|+|.||+|||.||+.|.+.+   +.|.+..||-.+..
T Consensus         7 iWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~lR~   45 (175)
T PRK00889          7 VWFTGLSGAGKTTISHALAEKLRARGYPVEVLDGDIVRT   45 (175)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf             998898999999999999999998699679977688887


No 259
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient.  The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes.  The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system.  PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein.  PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.79  E-value=0.0015  Score=42.40  Aligned_cols=25  Identities=40%  Similarity=0.682  Sum_probs=22.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             6996798886899999999970787
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      +-++||+|||||-|.|.+++....+
T Consensus        29 ~~iiG~SGsGKSTll~~i~gL~~~~   53 (227)
T cd03260          29 TALIGPSGCGKSTLLRLLNRLNDLI   53 (227)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf             9999999981999999997445026


No 260
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321   These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.77  E-value=0.001  Score=43.47  Aligned_cols=23  Identities=48%  Similarity=0.884  Sum_probs=19.0

Q ss_pred             CCCC-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6686-6996798886899999999970
Q gi|254780829|r   52 MPKN-ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        52 ~psN-iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      .|.| ||..||||||||-   |||-+.
T Consensus       125 ~~~GLiLVTGPTGSGKST---TlAsmI  148 (350)
T TIGR01420       125 RPRGLILVTGPTGSGKST---TLASMI  148 (350)
T ss_pred             CCCCCEEEECCCCCCHHH---HHHHHH
T ss_conf             669938987688986789---999999


No 261
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.76  E-value=0.0011  Score=43.39  Aligned_cols=23  Identities=39%  Similarity=0.612  Sum_probs=21.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      |+|.||||+|||-.||-||++|.
T Consensus         4 iIlTGyPgsGKTtfakeLak~L~   26 (261)
T COG4088           4 IILTGYPGSGKTTFAKELAKELR   26 (261)
T ss_pred             EEEECCCCCCCHHHHHHHHHHHH
T ss_conf             99826999880178999999999


No 262
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76  E-value=0.0092  Score=37.30  Aligned_cols=23  Identities=52%  Similarity=0.794  Sum_probs=15.9

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHH
Q ss_conf             66866996798886899999999
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLA   74 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA   74 (437)
                      .|+=+.|+||||+|||--.=-||
T Consensus       173 k~~vi~lVGPTGvGKTTTiAKLA  195 (388)
T PRK12723        173 KKRIFILVGPTGVGKTTTIAKLA  195 (388)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
T ss_conf             76289998998875787999999


No 263
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.76  E-value=0.0061  Score=38.45  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=25.3

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf             656686-69967988868999999999707877
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAGAPF   81 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF   81 (437)
                      ++.+.- +=++||+|||||.|++++.+.+.-|-
T Consensus        29 ~i~~GEilgivGeSGsGKSTl~~~ilgll~~~~   61 (327)
T PRK11022         29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPG   61 (327)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf             988999999999998789999999974889899


No 264
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.73  E-value=0.00093  Score=43.75  Aligned_cols=41  Identities=29%  Similarity=0.474  Sum_probs=27.6

Q ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE
Q ss_conf             56686-6996798886899999999970787--79714341012
Q gi|254780829|r   51 LMPKN-ILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE   91 (437)
Q Consensus        51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE   91 (437)
                      +.+.- +-|+||+|||||-|.|.+|++...-  =+..++...+.
T Consensus        29 i~~Ge~~~llGpSG~GKTTlLr~iaGl~~p~~G~I~~~g~~v~~   72 (351)
T PRK11432         29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTSGQIFIDGEDVTK   72 (351)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCC
T ss_conf             88998999999996499999999976999883699999999999


No 265
>PRK10536 hypothetical protein; Provisional
Probab=96.73  E-value=0.0047  Score=39.21  Aligned_cols=24  Identities=42%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             866996798886899999999970
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      .-+..+||.|||||+||=+.|-.+
T Consensus        75 ~ivf~~GpAGTGKT~lA~a~Al~~   98 (262)
T PRK10536         75 QLIFATGEAGCGKTWISAAKAAEA   98 (262)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             839998999875899999999999


No 266
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.73  E-value=0.0033  Score=40.17  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=31.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf             6996798886899999999970---787797143410121
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI   92 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~   92 (437)
                      |-|.|.||+|||-||+.|.+.+   +.|.+..|+-.+-+.
T Consensus         5 iW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R~~   44 (157)
T pfam01583         5 VWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHG   44 (157)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHCC
T ss_conf             9988989999999999999999975997799768877501


No 267
>smart00350 MCM minichromosome  maintenance proteins.
Probab=96.72  E-value=0.00065  Score=44.76  Aligned_cols=112  Identities=17%  Similarity=0.227  Sum_probs=64.1

Q ss_pred             HHHHHCEECHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf             98620304868999999999987788640864-44466566866996798886899999999970787797143410121
Q gi|254780829|r   14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI   92 (437)
Q Consensus        14 ~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~   92 (437)
                      +-+.--|-|.+..|+++..++..-..+..-+. ..|.+   .||||+|-|||||+-|.|.+++.+--.. .++|..=|.+
T Consensus       199 ~SiaP~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~---ihiLLvGDPGtgKSqlLk~~~~iaprsv-ytsG~gsS~a  274 (509)
T smart00350      199 RSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGD---INILLLGDPGTAKSQLLKYVEKTAPRAV-YTTGKGSSAV  274 (509)
T ss_pred             HHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCC---EEEEEECCCCCCHHHHHHHHHHHCCCEE-EEECCCCCCC
T ss_conf             85497323878899999999708876648988504154---1499846998236299999998588606-8734445557


Q ss_pred             CCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2234---310134678887652127899856549888868887
Q gi|254780829|r   93 GYVG---RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE  132 (437)
Q Consensus        93 gyvG---~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~  132 (437)
                      |--.   .|-++.  + +-.-.++.=.|-.|+.+++.++...+
T Consensus       275 GLTaav~rd~~~g--e-~~leaGALVlAD~GiccIDEfdKm~~  314 (509)
T smart00350      275 GLTAAVTRDPETR--E-FTLEGGALVLADNGVCCIDEFDKMDD  314 (509)
T ss_pred             CCEEEEEECCCCC--C-EEECCCCEECCCCCEEEEEEHHHCCH
T ss_conf             7068999817888--3-78725641205675478521320787


No 268
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=96.72  E-value=0.0013  Score=42.87  Aligned_cols=43  Identities=37%  Similarity=0.571  Sum_probs=27.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC----CC----EEE-EECCCEEECCCCCCCH
Q ss_conf             69967988868999999999707----87----797-1434101212234310
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG----AP----FIK-VEVTKFTEIGYVGRNV   99 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~----VP----F~~-~daT~ftE~gyvG~DV   99 (437)
                      |.+.||||+|||.+|+.||+.+.    .|    |.. -...+|- -||.|..|
T Consensus         1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~Y~~~~~~~~w-dgY~gq~v   52 (105)
T pfam00910         1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYSRNPDDDFW-DGYTGQPV   52 (105)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCC-CCCCCCEE
T ss_conf             98979998988999999999999983778789779678877656-78899857


No 269
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.71  E-value=0.0014  Score=42.71  Aligned_cols=29  Identities=34%  Similarity=0.769  Sum_probs=25.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             69967988868999999999707877971
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      |-.=||+|||||-+||.||+.++.+|+..
T Consensus         2 IaIdGpagsGKsT~ak~lA~~l~~~~ldt   30 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDT   30 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEECC
T ss_conf             88868997898999999999909907766


No 270
>PRK04182 cytidylate kinase; Provisional
Probab=96.71  E-value=0.002  Score=41.67  Aligned_cols=28  Identities=39%  Similarity=0.685  Sum_probs=26.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf             6996798886899999999970787797
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIK   83 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~   83 (437)
                      |-+-||+|||||.+|+.||+.++.||+.
T Consensus         3 ItI~g~~GSGk~tIak~LA~~lg~~~~d   30 (178)
T PRK04182          3 ITISGPPGSGKTTVARLLAEKLGLKLVS   30 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf             9995899888799999999995993872


No 271
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.69  E-value=0.0021  Score=41.43  Aligned_cols=36  Identities=28%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEE
Q ss_conf             6996798886899999999970---78779714341012
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE   91 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE   91 (437)
                      |.|+|.||+|||-||+.|...|   +.|.+..|+-++.+
T Consensus        10 iW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~lR~   48 (176)
T PRK05541         10 IWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE   48 (176)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf             997899999899999999999997599779988689998


No 272
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369    GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=96.66  E-value=0.00084  Score=44.05  Aligned_cols=93  Identities=12%  Similarity=0.066  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC--C--CCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             355332788863031011123678887532221002221001357665--6--543321012234320466522112466
Q gi|254780829|r  215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN--G--IGVSREGVQRDLLPLVEGSSVSTKYGS  290 (437)
Q Consensus       215 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~--~--~~~~~~g~~~~~~~~~e~~~v~~~~~~  290 (437)
                      -++|.-.....|+.+  .|...=..+---.|.........+|..-...  .  ......|..+....  ..--+..-|+.
T Consensus       346 LHTNDAAgAvtRL~D--MGvEPFL~aSsl~GVLAQRLVRrlCp~Cke~y~a~~~~~~~~G~~~~~~~--~~nGv~~lyr~  421 (495)
T TIGR02533       346 LHTNDAAGAVTRLID--MGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATDEELALLGISKKEPK--KDNGVIILYRP  421 (495)
T ss_pred             HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHC--CCCCEEEEECC
T ss_conf             554015446655532--58640489999999998633433151468889989799985488402103--57764899778


Q ss_pred             CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf             642024664016754221121255433451268861
Q gi|254780829|r  291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL  326 (437)
Q Consensus       291 ~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l  326 (437)
                      .|-++|               .--++.||..+.=-|
T Consensus       422 ~GC~~C---------------~~~GY~GRtGIyElL  442 (495)
T TIGR02533       422 VGCPAC---------------NHTGYRGRTGIYELL  442 (495)
T ss_pred             CCCHHH---------------CCCCCCCCEEEEEEE
T ss_conf             764212---------------788883550368867


No 273
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.65  E-value=0.0012  Score=43.10  Aligned_cols=48  Identities=25%  Similarity=0.420  Sum_probs=31.5

Q ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHHCCC----EEEEECCCEEE-------CCCCCCC
Q ss_conf             56686-6996798886899999999970787----79714341012-------1223431
Q gi|254780829|r   51 LMPKN-ILLVGPTGVGKTAISRRLARLAGAP----FIKVEVTKFTE-------IGYVGRN   98 (437)
Q Consensus        51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~VP----F~~~daT~ftE-------~gyvG~D   98 (437)
                      +.+.- +-++||||||||-|.|.+|++....    =+..++...+.       +|||-.|
T Consensus        28 i~~GE~~~llGpSG~GKTTlLr~iaGL~~p~~~~G~I~~~g~~v~~~~~~~R~ig~VFQ~   87 (362)
T TIGR03258        28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQN   87 (362)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCEECCCCCHHHCCEEEECCC
T ss_conf             999989999999974599999999777677788179999999999899888994897179


No 274
>KOG3354 consensus
Probab=96.64  E-value=0.0016  Score=42.17  Aligned_cols=32  Identities=31%  Similarity=0.512  Sum_probs=27.7

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             68669967988868999999999707877971
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      |--|++.|++||||+-++++|+.+++-+|.-.
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dg   43 (191)
T KOG3354          12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDG   43 (191)
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             60599983588774459999999858862455


No 275
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381   Members of this family function in ethanolamine  and propanediol  degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively.  The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems.  Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=96.62  E-value=0.00069  Score=44.59  Aligned_cols=23  Identities=30%  Similarity=0.637  Sum_probs=20.5

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             66996798886899999999970
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      -|+++||+|||||-|.++|-++.
T Consensus         2 r~~f~G~~gCGKTTL~q~L~g~~   24 (144)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEE   24 (144)
T ss_pred             EEEEEECCCCCHHHHHHHCCCCC
T ss_conf             17887158887443543116873


No 276
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=96.61  E-value=0.0013  Score=42.86  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=25.3

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf             669967988868999999999707877971434
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVT   87 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT   87 (437)
                      -+-++||+|||||.++|++.+.+.......+++
T Consensus        31 ~~aiiG~SGsGKStl~k~llgll~~~~~~~~G~   63 (254)
T PRK10418         31 VLALVGGSGSGKSLTCAAALGILPAGVRQTAGR   63 (254)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCEECCE
T ss_conf             999999998789999999957998898415789


No 277
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.60  E-value=0.015  Score=35.87  Aligned_cols=59  Identities=17%  Similarity=0.388  Sum_probs=32.4

Q ss_pred             CCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE---EECHHHHHHHHHHHH
Q ss_conf             25543345126-88615542467888764346889999999987---519689---984249999999999
Q gi|254780829|r  312 LLPEIQGRFPV-RVHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL---DFTEDSIDALADVAV  375 (437)
Q Consensus       312 lipE~~GR~p~-~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L---~ft~~Al~~IA~~A~  375 (437)
                      +.+--.|++-+ -+.++.++.+++.+-.     +++.|-..+|.   .+|+.+   ..|++-+.+.++.|-
T Consensus       384 ly~p~~G~I~idg~di~~i~~~~lR~~i-----~~V~Q~~~LF~gTI~eNI~~g~~~~sd~ei~~a~~~a~  449 (585)
T PRK13657        384 VFDPQSGRIRIDGTDIRTVTRASLRRNI-----GVVFQEAGLFNRSIEDNLRVGRPDATDEEMRAAAERAQ  449 (585)
T ss_pred             HCCCCCCCEEECCEECHHCCHHHHHHHC-----CEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf             1578879675898961016899998525-----22166763547659988752799998688999999843


No 278
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.59  E-value=0.002  Score=41.66  Aligned_cols=23  Identities=43%  Similarity=0.489  Sum_probs=20.2

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf             86699679888689999999997
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARL   76 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~   76 (437)
                      +=++|-|+||||||.|-+.|+..
T Consensus       128 ~~~vl~G~TG~GKT~iL~~L~~~  150 (311)
T TIGR03167       128 PLIVLGGMTGSGKTELLHALANA  150 (311)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHC
T ss_conf             76998788887789999999976


No 279
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.59  E-value=0.0013  Score=42.78  Aligned_cols=36  Identities=33%  Similarity=0.473  Sum_probs=26.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE
Q ss_conf             6996798886899999999970787--79714341012
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE   91 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE   91 (437)
                      +-++||||||||-|.|.+|+.....  -+..++...+.
T Consensus        33 ~~llGpSG~GKtTlLr~iaGl~~p~~G~I~~~g~~v~~   70 (353)
T TIGR03265        33 VCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITR   70 (353)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCC
T ss_conf             99999995359999999976999987399999999999


No 280
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.58  E-value=0.0032  Score=40.32  Aligned_cols=37  Identities=32%  Similarity=0.448  Sum_probs=28.6

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCEE
Q ss_conf             8669967988868999999999707877-971434101
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGAPF-IKVEVTKFT   90 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~VPF-~~~daT~ft   90 (437)
                      +=++++||||+||+-|.+.|.+...-+| +.+..|+=.
T Consensus         3 r~iil~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~TTR~   40 (184)
T smart00072        3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRP   40 (184)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf             77999999999999999999863964505778767279


No 281
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.56  E-value=0.0061  Score=38.45  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=20.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +.++||+|||||-|++.+++.+
T Consensus        36 ~aiiG~nGsGKSTLl~~l~Gl~   57 (280)
T PRK13649         36 TAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             EEEECCCCCHHHHHHHHHHCCC
T ss_conf             9999599986999999996699


No 282
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=96.54  E-value=0.0012  Score=43.04  Aligned_cols=26  Identities=38%  Similarity=0.797  Sum_probs=21.9

Q ss_pred             CCCC--EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6686--6996798886899999999970
Q gi|254780829|r   52 MPKN--ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        52 ~psN--iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +|+|  +=|+||||||||-|-|.+|+.=
T Consensus        23 v~~G~lvaLLGPSGSGKsTLLR~iAGLe   50 (241)
T TIGR00968        23 VPTGSLVALLGPSGSGKSTLLRVIAGLE   50 (241)
T ss_pred             ECCCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             4385279854689873789999983579


No 283
>PRK07667 uridine kinase; Provisional
Probab=96.53  E-value=0.0029  Score=40.54  Aligned_cols=38  Identities=24%  Similarity=0.388  Sum_probs=30.1

Q ss_pred             CCCCEEEE---CCCCCCHHHHHHHHHHHH---CCCEEEEECCCE
Q ss_conf             66866996---798886899999999970---787797143410
Q gi|254780829|r   52 MPKNILLV---GPTGVGKTAISRRLARLA---GAPFIKVEVTKF   89 (437)
Q Consensus        52 ~psNiLLi---GPtGtGKTlLAktLA~~l---~VPF~~~daT~f   89 (437)
                      -|.|.++|   |+||+|||.+|+.|++.+   ++|+.....-.|
T Consensus        10 ~~~~r~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~   53 (190)
T PRK07667         10 HKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDH   53 (190)
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             75986999977989788999999999998665983799966624


No 284
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.52  E-value=0.0066  Score=38.26  Aligned_cols=40  Identities=15%  Similarity=0.209  Sum_probs=32.9

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf             6866996798886899999999970---787797143410121
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI   92 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~   92 (437)
                      +.=|-|+|.||+|||-||+.|...+   +.|.+..||-.+-+.
T Consensus        24 g~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~lR~~   66 (198)
T PRK03846         24 GVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGDNVRHG   66 (198)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf             8699987999998899999999999975997599777999874


No 285
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.52  E-value=0.0062  Score=38.42  Aligned_cols=66  Identities=18%  Similarity=0.182  Sum_probs=42.1

Q ss_pred             HHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC-------CEEEEE
Q ss_conf             9986203048689999999999877886408644446656686699679888689999999997078-------779714
Q gi|254780829|r   13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA-------PFIKVE   85 (437)
Q Consensus        13 ~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V-------PF~~~d   85 (437)
                      +.+-+..+.|++++-..+--.+    |.-.    .+.+..+.=+||.||+|+||+.|++.|-+-+..       |+....
T Consensus        46 y~~F~d~~fG~e~~i~~~V~~~----k~AA----~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ys~t~eG~~Y~~~  117 (361)
T smart00763       46 YRFFDHDFFGMEEAIERFVNYF----KSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFK  117 (361)
T ss_pred             CCCHHHHHCCCHHHHHHHHHHH----HHHH----HCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             5011013116489999999999----9998----4467125699998899887799999999999986267768559998


Q ss_pred             C
Q ss_conf             3
Q gi|254780829|r   86 V   86 (437)
Q Consensus        86 a   86 (437)
                      +
T Consensus       118 w  118 (361)
T smart00763      118 W  118 (361)
T ss_pred             E
T ss_conf             3


No 286
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.52  E-value=0.0025  Score=40.93  Aligned_cols=41  Identities=27%  Similarity=0.438  Sum_probs=28.7

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEE
Q ss_conf             65668-66996798886899999999970787--7971434101
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFT   90 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ft   90 (437)
                      ++.|. -++++||+|||||-|++.+++.+--.  .+.+++..++
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~   69 (235)
T COG1122          26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS   69 (235)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf             98789899998899988999999953767688984887781331


No 287
>KOG1969 consensus
Probab=96.50  E-value=0.0035  Score=40.05  Aligned_cols=41  Identities=29%  Similarity=0.532  Sum_probs=33.6

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf             66866996798886899999999970787797143410121
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI   92 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~   92 (437)
                      .+|=.||.||||-|||-||.-+|+-+|---+-+.||.=.-+
T Consensus       325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~  365 (877)
T KOG1969         325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA  365 (877)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf             40068753688787247999999862854887325554347


No 288
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea.  This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily.  The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50  E-value=0.0017  Score=42.11  Aligned_cols=28  Identities=25%  Similarity=0.465  Sum_probs=22.7

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             5668-669967988868999999999707
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.+. -+-++||||||||-|.|.+|+...
T Consensus        47 i~~GE~~~ivG~SGsGKSTLLr~i~GL~~   75 (269)
T cd03294          47 VREGEIFVIMGLSGSGKSTLLRCINRLIE   75 (269)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             88999999998998489999999975999


No 289
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113   This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.   In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=96.50  E-value=0.0035  Score=40.01  Aligned_cols=90  Identities=22%  Similarity=0.325  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEE
Q ss_conf             899999862030486899999999998778864086444466566866996798886899999999970---78779714
Q gi|254780829|r    9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVE   85 (437)
Q Consensus         9 P~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~d   85 (437)
                      +.+=..+...-|||...|-|.|=-.|.      +....+      |=|||.|=|||||=++|||+=..+   +-||+++.
T Consensus       203 ~~~~~~~~~~~i~G~Spam~~v~~~~~------~vA~~n------STVLlRGESGTGKEl~A~AIH~~SpR~~~PFVK~N  270 (574)
T TIGR01817       203 AARRRSGKEDGIVGKSPAMRQVVDQIK------VVARSN------STVLLRGESGTGKELIAKAIHELSPRAKRPFVKLN  270 (574)
T ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHH------HHCCCC------CEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf             123312344740124789999998865------201317------66785056574433444234046645578854500


Q ss_pred             CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             3410121223431013467888765212789985654
Q gi|254780829|r   86 VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV  122 (437)
Q Consensus        86 aT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~  122 (437)
                      |-.+.|.=            |-..=-+..|-|..|-+
T Consensus       271 CAALse~l------------LESELFGHEKGAFTGA~  295 (574)
T TIGR01817       271 CAALSETL------------LESELFGHEKGAFTGAV  295 (574)
T ss_pred             CCCCCCCH------------HHHHHHCCCCHHHHHHH
T ss_conf             64477611------------24545134301468887


No 290
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.48  E-value=0.02  Score=35.11  Aligned_cols=41  Identities=24%  Similarity=0.356  Sum_probs=27.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHH
Q ss_conf             6996798886899999999970787797143410121223431013
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ  101 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes  101 (437)
                      +=++|++|||||.|+++|.+.+.-+- .++|    +..|-|.|+-.
T Consensus        45 lgivGeSGsGKSTl~~~i~gll~~~~-~~sG----~I~~~G~~i~~   85 (330)
T PRK09473         45 LGIVGESGSGKSQTAFALMGLLAANG-RIGG----SATFNGREILN   85 (330)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCCCCC-CEEE----EEEECCEECCC
T ss_conf             99986898779999999976888888-3358----99999998665


No 291
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.47  E-value=0.0024  Score=41.05  Aligned_cols=29  Identities=31%  Similarity=0.625  Sum_probs=25.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             69967988868999999999707877971
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      |-.=||+||||+-+||.||+.+|.+|+..
T Consensus         7 IaIDGpagSGKST~ak~lA~~L~~~yldT   35 (225)
T PRK00023          7 IAIDGPAGSGKGTVAKILAKKLGFHYLDT   35 (225)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEECH
T ss_conf             99658986787899999999939887641


No 292
>PRK13764 ATPase; Provisional
Probab=96.47  E-value=0.0024  Score=41.07  Aligned_cols=26  Identities=31%  Similarity=0.594  Sum_probs=23.7

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ...|||..||||+|||-+|++||.++
T Consensus       258 ~a~GilIaG~PGaGKsTfaqalA~~~  283 (605)
T PRK13764        258 RAEGILIAGAPGAGKSTFAQALAEFY  283 (605)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             36649997799997789999999999


No 293
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.    Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=96.46  E-value=0.01  Score=36.99  Aligned_cols=109  Identities=20%  Similarity=0.258  Sum_probs=61.7

Q ss_pred             CCCC--EEEECCCCCCHHHHHHHHHHHH--CC----------CEEEEECCCEEE----------CCCCCCCHHHHHHHHH
Q ss_conf             6686--6996798886899999999970--78----------779714341012----------1223431013467888
Q gi|254780829|r   52 MPKN--ILLVGPTGVGKTAISRRLARLA--GA----------PFIKVEVTKFTE----------IGYVGRNVEQIIRDLV  107 (437)
Q Consensus        52 ~psN--iLLiGPtGtGKTlLAktLA~~l--~V----------PF~~~daT~ftE----------~gyvG~DVes~i~~l~  107 (437)
                      +|.|  +-++||||||||-|||=|=++-  +.          +.--.|=+++.+          +|     -||+..-|+
T Consensus       497 I~~n~k~tiVGmSGSGKsTLaKLLV~FfePQ~~sG~I~Lng~~l~~iD~h~LRq~INYlPQeP~IF-----~GsILeNLL  571 (710)
T TIGR01193       497 IKKNEKITIVGMSGSGKSTLAKLLVGFFEPQAESGEILLNGISLKDIDRHELRQFINYLPQEPYIF-----SGSILENLL  571 (710)
T ss_pred             EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCHHHCCHHHHCCCCCCCCCCCEEE-----CCCHHHHHH
T ss_conf             507854899736797489999875203589988773652782445337344412335568878451-----231788765


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             76521278998565498888688875555311432-------1100466898898616888854998
Q gi|254780829|r  108 DVAINIVRESRRDEVREQASINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEIDI  167 (437)
Q Consensus       108 ~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~i~i  167 (437)
                      --|...+........++  ++++++.+.....|.+       ..-.+++.|+-.+-.-.+++-+|-+
T Consensus       572 lGak~~~~~~~i~~A~~--iAEIk~DIe~mp~Gy~T~LS~~~~~iSGGQKQRialARaLL~~s~vLi  636 (710)
T TIGR01193       572 LGAKENVSQDEILKAVE--IAEIKDDIEKMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI  636 (710)
T ss_pred             HCCCCCCCHHHHHHHHH--HCCCHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf             03789989899998840--201124583188876600010374115158999999998618886788


No 294
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain.  They export degradative enzymes by using a type I protein secretion system and  lack an N-terminal signal peptide, but contain a C-terminal secretion signal.  The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP).  For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli.  The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior.  HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels.  The spectrum of transport substra
Probab=96.43  E-value=0.0036  Score=39.96  Aligned_cols=28  Identities=29%  Similarity=0.687  Sum_probs=23.3

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             5668-669967988868999999999707
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.|. -+-++||+|||||-|+|.|+++..
T Consensus        25 i~~G~~vaIvG~sGsGKSTLl~ll~gl~~   53 (173)
T cd03246          25 IEPGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             85999999999999809999999966666


No 295
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.42  E-value=0.0026  Score=40.89  Aligned_cols=43  Identities=26%  Similarity=0.375  Sum_probs=29.3

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCE--EEEECCCEEEC
Q ss_conf             656686-69967988868999999999707877--97143410121
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAGAPF--IKVEVTKFTEI   92 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF--~~~daT~ftE~   92 (437)
                      ++.+.- +=++||+|||||-|+|+||+...--+  +..++..++..
T Consensus        29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~   74 (252)
T COG1124          29 EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPK   74 (252)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCC
T ss_conf             9648978999848989888999999565678886289888405766


No 296
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804   Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous.   Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) .    The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction .   Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=96.42  E-value=0.0033  Score=40.17  Aligned_cols=44  Identities=32%  Similarity=0.524  Sum_probs=37.9

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             0486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      |||||+.|++|=.++        ++...      .|||.-|.=||||+-.||.|+-.|
T Consensus         6 iVGQe~LK~ALLL~A--------v~P~i------GGVLirG~KGTAKSTaaR~L~~LL   49 (688)
T TIGR02442         6 IVGQEDLKLALLLNA--------VNPRI------GGVLIRGEKGTAKSTAARGLAALL   49 (688)
T ss_pred             CCCHHHHHHHHHHEE--------ECCCC------CEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             214279865321002--------52663------707887788862789888487616


No 297
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome.  The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation.  To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes.  X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family.  The disease is characterized by a striking and unpredictable variation in phenotypic expression.  Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.42  E-value=0.0023  Score=41.15  Aligned_cols=29  Identities=41%  Similarity=0.740  Sum_probs=23.4

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             65668-669967988868999999999707
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.|. -+.++||+|||||-|.|.+++...
T Consensus        23 ~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~   52 (166)
T cd03223          23 EIKPGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf             988999999995899988999999869876


No 298
>PRK06696 uridine kinase; Validated
Probab=96.42  E-value=0.014  Score=36.18  Aligned_cols=34  Identities=32%  Similarity=0.569  Sum_probs=27.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCE
Q ss_conf             6996798886899999999970---787797143410
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKF   89 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~f   89 (437)
                      |=.-||||+|||.||+.||..+   +.|++.+..-.|
T Consensus        29 VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf   65 (227)
T PRK06696         29 VAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDF   65 (227)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             9977899878799999999999746994899715443


No 299
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264   Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system  common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=96.41  E-value=0.0046  Score=39.28  Aligned_cols=69  Identities=23%  Similarity=0.527  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHHHHHH--------------------------HHCCCCC-----CC----------------CCCCCC
Q ss_conf             868999999999987788--------------------------6408644-----44----------------665668
Q gi|254780829|r   22 GQQDAKRAVAIALRNRWR--------------------------RQQLPAD-----LR----------------DELMPK   54 (437)
Q Consensus        22 GQ~~AKk~lavav~nhy~--------------------------R~~~~~~-----~~----------------~e~~ps   54 (437)
                      +|+.|-|++.--.|.=|.                          |.+....     .+                ..+-||
T Consensus        85 ~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~L~~Le~ENRrL~~~~~~Gst~~~Gli~~~~~m~kic~tIekvA~s  164 (451)
T TIGR02915        85 DRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFRLYTLETENRRLQSALGGGSTALEGLITSSPGMQKICRTIEKVAPS  164 (451)
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCC
T ss_conf             83889999643751013578757899999999888888888769987406887410365220685067898886521200


Q ss_pred             C--EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEE
Q ss_conf             6--6996798886899999999970---7877971434101
Q gi|254780829|r   55 N--ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFT   90 (437)
Q Consensus        55 N--iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ft   90 (437)
                      |  +||+|=|||||=.+||+|=+.+   +-||+-+.|-..=
T Consensus       165 d~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIP  205 (451)
T TIGR02915       165 DITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIP  205 (451)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf             00130104667117899989842057897773444167457


No 300
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.40  E-value=0.0074  Score=37.92  Aligned_cols=22  Identities=41%  Similarity=0.640  Sum_probs=20.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +-++||+|||||-|+|.+++.+
T Consensus        36 v~IiG~nGsGKSTL~k~l~Gll   57 (304)
T PRK13651         36 IAIIGQTGSGKTTFIEHLNALL   57 (304)
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
T ss_conf             9998799985999999996699


No 301
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.40  E-value=0.0066  Score=38.24  Aligned_cols=36  Identities=31%  Similarity=0.505  Sum_probs=30.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEE
Q ss_conf             6996798886899999999970---78779714341012
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE   91 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE   91 (437)
                      |-+.|.||+|||.||+.|.+.+   +.|.+..||-.+-+
T Consensus         2 iW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDGD~iR~   40 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH   40 (149)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf             898799999999999999999998699759977488997


No 302
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.39  E-value=0.0083  Score=37.59  Aligned_cols=27  Identities=33%  Similarity=0.624  Sum_probs=24.4

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             566866996798886899999999970
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      -.|...|+.||.|+||+.+|+++|+.+
T Consensus        24 rl~HA~Lf~Gp~G~GK~~~A~~~A~~l   50 (319)
T PRK08769         24 RLGHGLLICGPEGLGKRAVALALAEHV   50 (319)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             942068758999878999999999998


No 303
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import.  Responsible for energy coupling to the transport system.  The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP).  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39  E-value=0.0022  Score=41.32  Aligned_cols=23  Identities=43%  Similarity=0.758  Sum_probs=21.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||+|||||-|.|.+|+...
T Consensus        31 ~~iiGpSGsGKSTll~~i~Gl~~   53 (239)
T cd03296          31 VALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999779999999976999


No 304
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38  E-value=0.014  Score=36.17  Aligned_cols=18  Identities=61%  Similarity=0.868  Sum_probs=9.9

Q ss_pred             CCCCC-EEEECCCCCCHHH
Q ss_conf             56686-6996798886899
Q gi|254780829|r   51 LMPKN-ILLVGPTGVGKTA   68 (437)
Q Consensus        51 ~~psN-iLLiGPtGtGKTl   68 (437)
                      +...| +-|+||||+|||-
T Consensus       345 ~~~gGv~AlvGpTGvGKTT  363 (557)
T PRK12727        345 LERGGVIALVGPTGAGKTT  363 (557)
T ss_pred             HHCCCEEEEECCCCCCCHH
T ss_conf             5407647874377767311


No 305
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK.  ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles.  ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP.  In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.37  E-value=0.0023  Score=41.22  Aligned_cols=30  Identities=33%  Similarity=0.643  Sum_probs=23.5

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             656686-699679888689999999997078
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      ++.+.- +-++||+|||||-|.|.+|+....
T Consensus        22 ~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~p   52 (213)
T cd03301          22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEP   52 (213)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             9869989999999988099999999769999


No 306
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.37  E-value=0.0023  Score=41.17  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=20.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||||||||-|.|.+|+...
T Consensus        53 ~~lvGpSGsGKSTLLr~i~GL~~   75 (382)
T TIGR03415        53 CVLMGLSGSGKSSLLRAVNGLNP   75 (382)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999997349999999975999


No 307
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=96.36  E-value=0.0047  Score=39.21  Aligned_cols=41  Identities=27%  Similarity=0.608  Sum_probs=35.9

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf             66866996798886899999999970---787797143410121
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI   92 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~   92 (437)
                      .+++||+.|-|||||-++|+++-..+   +=||+.+.|--+-|.
T Consensus       267 tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~  310 (560)
T COG3829         267 TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET  310 (560)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHH
T ss_conf             99828995378866899999987448434798078764338888


No 308
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.35  E-value=0.0041  Score=39.61  Aligned_cols=30  Identities=33%  Similarity=0.500  Sum_probs=25.4

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             8669967988868999999999707877971
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      .+|+..|+||||||-+++.|+ +++-+-+..
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l   30 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIEL   30 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHH-HHCCCEEEH
T ss_conf             937993799986687999999-829846619


No 309
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE).  The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE).  The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis.  The molecular mechanism of nickel uptake in many bacteria and most archaea is not known.  Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides.  The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.34  E-value=0.0025  Score=41.01  Aligned_cols=29  Identities=28%  Similarity=0.479  Sum_probs=23.7

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             65668-669967988868999999999707
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.|. -+-++||+|||||.|+|.+++...
T Consensus        27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~   56 (228)
T cd03257          27 SIKKGETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             986998999999999869999999972898


No 310
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; InterPro: IPR012699   Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds , including phosphites as well as phosphonates. PhnN in Escherichia coli shows considerable homology to guanylate kinases (2.7.4.8 from EC), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP..
Probab=96.34  E-value=0.0035  Score=40.01  Aligned_cols=25  Identities=56%  Similarity=0.917  Sum_probs=22.2

Q ss_pred             EEEECCCCCCH-HHHHHHHHHHHCCC
Q ss_conf             69967988868-99999999970787
Q gi|254780829|r   56 ILLVGPTGVGK-TAISRRLARLAGAP   80 (437)
Q Consensus        56 iLLiGPtGtGK-TlLAktLA~~l~VP   80 (437)
                      |+++||||+|| |||+-+=+++.+.|
T Consensus         4 i~vvGPSGaGKDtLl~~AR~~l~~~~   29 (183)
T TIGR02322         4 IYVVGPSGAGKDTLLDYARARLAGDP   29 (183)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf             89970778867789999999704899


No 311
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=96.33  E-value=0.03  Score=33.98  Aligned_cols=71  Identities=23%  Similarity=0.199  Sum_probs=41.3

Q ss_pred             CHHHHHHH-HHHCEECHHHHHHHHHHHHHHHHHHHCCCCC-------------CCCCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf             88999998-6203048689999999999877886408644-------------446656686699679888689999999
Q gi|254780829|r    8 SPREIVSE-LDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-------------LRDELMPKNILLVGPTGVGKTAISRRL   73 (437)
Q Consensus         8 tP~~i~~~-Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~-------------~~~e~~psNiLLiGPtGtGKTlLAktL   73 (437)
                      ||-+-|+. +..=.+-.|.|-..+.-+.=.=|.++.....             .+....|+|+-|.|+.|+|||+|....
T Consensus         2 tP~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~kGlYl~G~VGrGKTmLMDlF   81 (361)
T pfam03969         2 TPPQRYTAQLQRGAIFPDVAQANAVPALDRLYQRLQAADFVRQSGAGGKLWGRKRSHQPVRGLYLWGGVGRGKTHLMDSF   81 (361)
T ss_pred             CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf             87999999986799999989999999999999999715565555234443157887999986898899888699999999


Q ss_pred             HHHHC
Q ss_conf             99707
Q gi|254780829|r   74 ARLAG   78 (437)
Q Consensus        74 A~~l~   78 (437)
                      -..+.
T Consensus        82 y~~lp   86 (361)
T pfam03969        82 FESLP   86 (361)
T ss_pred             HHHCC
T ss_conf             98677


No 312
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR).  DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.32  E-value=0.004  Score=39.65  Aligned_cols=23  Identities=30%  Similarity=0.563  Sum_probs=20.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.++||+|+|||-|.|.|++.+.
T Consensus        38 ~~ilGpnGaGKSTLl~~l~Gl~~   60 (194)
T cd03213          38 TAIMGPSGAGKSTLLNALAGRRT   60 (194)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99998999519999999857777


No 313
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=96.32  E-value=0.0039  Score=39.70  Aligned_cols=22  Identities=32%  Similarity=0.570  Sum_probs=20.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      |=|.||||+|||-||.||.+.|
T Consensus        22 lWlTGLSGsGKsTiA~Al~~~L   43 (187)
T TIGR00455        22 LWLTGLSGSGKSTIANALEKKL   43 (187)
T ss_pred             EEEECCCCCHHHHHHHHHHHHH
T ss_conf             8511688563579999999999


No 314
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31  E-value=0.017  Score=35.57  Aligned_cols=13  Identities=77%  Similarity=1.265  Sum_probs=6.4

Q ss_pred             CEEEECCCCCCHH
Q ss_conf             6699679888689
Q gi|254780829|r   55 NILLVGPTGVGKT   67 (437)
Q Consensus        55 NiLLiGPtGtGKT   67 (437)
                      -|=|+||||+|||
T Consensus       243 ~IALVGPTGVGKT  255 (436)
T PRK11889        243 TIALIGPTGVGKT  255 (436)
T ss_pred             EEEEECCCCCCHH
T ss_conf             7999899998889


No 315
>KOG0060 consensus
Probab=96.31  E-value=0.003  Score=40.42  Aligned_cols=24  Identities=46%  Similarity=0.832  Sum_probs=14.8

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf             686699679888689999999997
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARL   76 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~   76 (437)
                      .+|+|..||+|||||=|-|.+|+.
T Consensus       461 g~~LLItG~sG~GKtSLlRvlggL  484 (659)
T KOG0060         461 GQNLLITGPSGCGKTSLLRVLGGL  484 (659)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf             975999789987636899998532


No 316
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.31  E-value=0.0025  Score=40.99  Aligned_cols=29  Identities=28%  Similarity=0.519  Sum_probs=23.1

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             65668-669967988868999999999707
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.|. =+-++||+|||||-|.|.+|+...
T Consensus        23 ~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~   52 (255)
T PRK11248         23 TLESGELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             986998999999998469999999975998


No 317
>cd03299 ABC_ModC_like Archeal protein closely related to ModC.  ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31  E-value=0.0027  Score=40.79  Aligned_cols=29  Identities=28%  Similarity=0.574  Sum_probs=23.1

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             656686-69967988868999999999707
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.+.- +-++||+|||||-|.|.+|+...
T Consensus        21 ~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl~~   50 (235)
T cd03299          21 EVERGDYFVILGPTGSGKSVLLETIAGFIK   50 (235)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             988998999999996359999999974999


No 318
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.30  E-value=0.0027  Score=40.75  Aligned_cols=29  Identities=38%  Similarity=0.692  Sum_probs=23.0

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             656686-69967988868999999999707
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.+.- +-++||+|||||-|.|.+|+...
T Consensus        26 ~i~~Ge~~~llGpsG~GKTTllr~iaGl~~   55 (358)
T PRK11650         26 DVADGEFIVLVGPSGCGKSTLLRMVAGLER   55 (358)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             988998999999986369999999976999


No 319
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.30  E-value=0.0027  Score=40.80  Aligned_cols=28  Identities=32%  Similarity=0.603  Sum_probs=22.6

Q ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             56686-69967988868999999999707
Q gi|254780829|r   51 LMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.+.- +-|+||+|||||-|.|.+|++..
T Consensus        40 I~~GE~~~llGpSGsGKSTLlr~iaGl~~   68 (378)
T PRK09452         40 INNGEFLTLLGPSGCGKTTVLRLIAGFET   68 (378)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99998999998999769999999976999


No 320
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.30  E-value=0.022  Score=34.81  Aligned_cols=69  Identities=32%  Similarity=0.405  Sum_probs=45.8

Q ss_pred             HHHHHHHHH---CEECHHHHHHHHHHHH-----------HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf             999998620---3048689999999999-----------87788640864444665668669967988868999999999
Q gi|254780829|r   10 REIVSELDR---YIIGQQDAKRAVAIAL-----------RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR   75 (437)
Q Consensus        10 ~~i~~~Ld~---~VvGQ~~AKk~lavav-----------~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~   75 (437)
                      ++|.+.|-+   ..|.|++--+.+.-.+           |.-|+|++.      ...|==||+-|.|||||.-||--||.
T Consensus        41 ~ei~~~L~~~~~~~i~~~el~~~v~~~l~~~~~~~~a~rY~~~r~~r~------~~~pliILigGtsGvGKSTlA~~LA~  114 (306)
T PRK04220         41 SEIEEELKKEGITKITKEELRRRVYYKLIEKDYEEIAEKYLLWRRIRK------SKEPIIILIGGASGVGTSTIAFELAS  114 (306)
T ss_pred             HHHHHHHHHCCCEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC------CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             999999986577163599999999999998440999999999999853------69987999858998878999999999


Q ss_pred             HHCCCEEEE
Q ss_conf             707877971
Q gi|254780829|r   76 LAGAPFIKV   84 (437)
Q Consensus        76 ~l~VPF~~~   84 (437)
                      .||.|=+..
T Consensus       115 rLgI~~vis  123 (306)
T PRK04220        115 RLGIRSVIG  123 (306)
T ss_pred             HHCCCEEEC
T ss_conf             709883422


No 321
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=96.30  E-value=0.0041  Score=39.58  Aligned_cols=70  Identities=21%  Similarity=0.352  Sum_probs=43.8

Q ss_pred             HHHHHHCEECHHHHHHHHHHHHHHHHHHHC------CCC--------------------------------CCCCCCCCC
Q ss_conf             998620304868999999999987788640------864--------------------------------444665668
Q gi|254780829|r   13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQ------LPA--------------------------------DLRDELMPK   54 (437)
Q Consensus        13 ~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~------~~~--------------------------------~~~~e~~ps   54 (437)
                      |.++..--.|--+++++|..|.+.=.....      ...                                ......-|+
T Consensus        34 y~~~~~~~~g~~~i~~aL~~a~~~~~~~~~~~~~l~~~~~~~~~~i~~N~~~~l~~~~gy~P~~~g~~l~~w~~k~~~kr  113 (271)
T pfam01057        34 YLRLSASPAGRRQIKNALQMAIIRMFSTKTALDYLAKPEVTANFDIEENRIYQLLSLNGYNPAEVGQVLLAWLSKQGGKR  113 (271)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             99885265448999999999999986257599985067888656644178999999849998999999999984478887


Q ss_pred             C-EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             6-69967988868999999999707877971
Q gi|254780829|r   55 N-ILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        55 N-iLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      | |.+.||+.||||+||.+||..+  |.+.+
T Consensus       114 N~i~~~Gp~~TGks~la~ai~~~~--~~~g~  142 (271)
T pfam01057       114 NTVWFYGPASTGKTNLAQAIAHAV--PLYGC  142 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHC--CCEEE
T ss_conf             569998898767899999999868--95278


No 322
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.30  E-value=0.0027  Score=40.76  Aligned_cols=49  Identities=22%  Similarity=0.505  Sum_probs=30.7

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCE--EEEECCCEEE-------CCCCCCC
Q ss_conf             656686-69967988868999999999707877--9714341012-------1223431
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAGAPF--IKVEVTKFTE-------IGYVGRN   98 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF--~~~daT~ftE-------~gyvG~D   98 (437)
                      ++.+.- +-|+||+|||||-|.|.||+....--  +..++...+.       .|||-.+
T Consensus        25 ~i~~Ge~~~llGpsG~GKSTllr~i~Gl~~p~~G~I~i~g~~v~~~~~~~r~ig~vfQ~   83 (369)
T PRK11000         25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQS   83 (369)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECC
T ss_conf             98799899999999736999999997799999549999999998799778786999407


No 323
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.29  E-value=0.0043  Score=39.43  Aligned_cols=50  Identities=20%  Similarity=0.242  Sum_probs=31.6

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHH
Q ss_conf             5668-6699679888689999999997078779714341012122343101
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE  100 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVe  100 (437)
                      +.|. -+-|+||.|||||-|.|.||+.+..---.+....=...+|+..+..
T Consensus        24 I~~Ge~vgLVG~NGsGKSTLlklL~G~~~~d~G~i~~~~~~~i~~l~qe~~   74 (638)
T PRK10636         24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGSWQLAWVNQETP   74 (638)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCC
T ss_conf             989989999889998899999998089988850899889837997446554


No 324
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment.  ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28  E-value=0.0028  Score=40.66  Aligned_cols=23  Identities=39%  Similarity=0.790  Sum_probs=21.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||+|||||-|.|.+|+...
T Consensus        30 ~~ilGpSG~GKSTllr~i~gl~~   52 (242)
T cd03295          30 LVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999569999999975999


No 325
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.28  E-value=0.0029  Score=40.59  Aligned_cols=23  Identities=35%  Similarity=0.739  Sum_probs=20.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++|||||||+-|-|.+|+...
T Consensus        32 vsilGpSGcGKSTLLriiAGL~~   54 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGLEK   54 (248)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCC
T ss_conf             99989997889999999968787


No 326
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27  E-value=0.0028  Score=40.61  Aligned_cols=23  Identities=39%  Similarity=0.746  Sum_probs=21.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||+|||||-|.|.+|+...
T Consensus        29 ~~ivGpSG~GKSTllr~i~Gl~~   51 (178)
T cd03229          29 VALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999839999999985999


No 327
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.27  E-value=0.005  Score=39.05  Aligned_cols=22  Identities=36%  Similarity=0.656  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      |++.||||+|||-|.++|-...
T Consensus         5 ivvsgPSGaGK~Tli~~l~~~~   26 (184)
T PRK10078          5 IWLMGPSGSGKDSLLAALRQRE   26 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHHCC
T ss_conf             9998998699999999998448


No 328
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.27  E-value=0.0023  Score=41.18  Aligned_cols=51  Identities=24%  Similarity=0.363  Sum_probs=32.3

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHC--CCEEEEECCCE-------------EECCCCCCCHH
Q ss_conf             656686-69967988868999999999707--87797143410-------------12122343101
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG--APFIKVEVTKF-------------TEIGYVGRNVE  100 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~--VPF~~~daT~f-------------tE~gyvG~DVe  100 (437)
                      ++.+.. +-++||+|||||.|.+.+|+...  -=.+..++..+             ...|||-.|-.
T Consensus        20 ~i~~g~i~~l~GpsGaGKTTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~l~~~~r~ig~vfQ~~~   86 (352)
T PRK11144         20 TLPAQGITAIFGRSGAGKTSLINLISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR   86 (352)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCCCCCHHHCCEEEEECCCC
T ss_conf             9889989999999996299999999768999965999999998555410137676688689935763


No 329
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.26  E-value=0.0028  Score=40.63  Aligned_cols=29  Identities=34%  Similarity=0.564  Sum_probs=23.3

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             5668-6699679888689999999997078
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      +.+. -+-++||+|||||-|.|.+|+....
T Consensus        25 i~~GE~~~llGpSGsGKSTLlr~iaGL~~p   54 (352)
T PRK10851         25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQ   54 (352)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             999989999999984699999999769999


No 330
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.26  E-value=0.0044  Score=39.37  Aligned_cols=25  Identities=40%  Similarity=0.478  Sum_probs=21.8

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf             5668669967988868999999999
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLAR   75 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~   75 (437)
                      ++.+=++|-|+||||||.|-+.|+.
T Consensus       135 l~~~~~vl~G~TG~GKT~lL~~L~~  159 (333)
T PRK11784        135 LEEPLVVLGGMTGSGKTRLLQALAN  159 (333)
T ss_pred             HCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf             5468599867888778999999997


No 331
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.24  E-value=0.003  Score=40.45  Aligned_cols=23  Identities=35%  Similarity=0.657  Sum_probs=21.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||||||||-|.|.+++...
T Consensus        57 ~~ivG~SGsGKSTLlr~i~gL~~   79 (400)
T PRK10070         57 FVIMGLSGSGKSTMVRLLNRLIE   79 (400)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999998469999999975999


No 332
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=96.24  E-value=0.0044  Score=39.39  Aligned_cols=25  Identities=32%  Similarity=0.616  Sum_probs=21.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             6996798886899999999970787
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      |...||||||||.+|+.|+..++..
T Consensus         2 IgIaG~SgSGKTT~a~~L~~~l~~~   26 (196)
T pfam00485         2 IGVAGSSGAGKTTVARTFVSIFGRE   26 (196)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             8998998571999999999996605


No 333
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.23  E-value=0.0063  Score=38.36  Aligned_cols=24  Identities=29%  Similarity=0.486  Sum_probs=21.9

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             669967988868999999999707
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      -+-++||+|||||-|+|.+++.+.
T Consensus        30 ~vaiiG~nGsGKSTL~~~l~Gll~   53 (274)
T PRK13644         30 YIGIIGKNGSGKSTLALHLNGLLR   53 (274)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999809999999970685


No 334
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE).  They are clustered together phylogenetically.  MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all.  An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport.  The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.21  E-value=0.003  Score=40.45  Aligned_cols=25  Identities=32%  Similarity=0.578  Sum_probs=22.2

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             6699679888689999999997078
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -+-++||+|||||-|.+.+|+.+..
T Consensus        32 ~~~iiG~sGsGKTTll~~i~Gl~~p   56 (218)
T cd03255          32 FVAIVGPSGSGKSTLLNILGGLDRP   56 (218)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             9999999998699999999669999


No 335
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.21  E-value=0.0036  Score=39.92  Aligned_cols=28  Identities=32%  Similarity=0.595  Sum_probs=22.7

Q ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             56686-69967988868999999999707
Q gi|254780829|r   51 LMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.|.- +-++||+|||||-|.|.+++.+.
T Consensus        30 i~~Ge~~~i~G~sGsGKSTLlk~i~gl~~   58 (225)
T PRK10247         30 LRAGEFKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             85996999999999999999999964668


No 336
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors.  The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan.  The pigment precursors are encoded by the white, brown, and scarlet genes, respectively.  Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan.  However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes.  Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in 
Probab=96.21  E-value=0.0018  Score=41.97  Aligned_cols=43  Identities=16%  Similarity=0.282  Sum_probs=27.6

Q ss_pred             HHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             77886408644446656686-69967988868999999999707
Q gi|254780829|r   36 NRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        36 nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++|+-.+.=....-++.|.- +-++||+|||||-|.+.|++.+.
T Consensus        15 ~~~~~~~vL~~vs~~i~~Ge~~~ilGpnGsGKSTLl~~i~G~~~   58 (226)
T cd03234          15 NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             CCCCCEEEEECCEEEEECCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             07998899889778991880999998999609999999967897


No 337
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D.  PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21  E-value=0.0034  Score=40.11  Aligned_cols=30  Identities=30%  Similarity=0.586  Sum_probs=23.1

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             656686-699679888689999999997078
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      ++.+.. +-++||+|||||-|.|.+|+....
T Consensus        22 ~v~~Ge~~~iiGpSGsGKSTllr~i~Gl~~p   52 (232)
T cd03300          22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETP   52 (232)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             8879989999999998399999999779999


No 338
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21  E-value=0.0036  Score=39.94  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=21.6

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             6699679888689999999997078
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      =+-++||+|||||-|.+.+|+....
T Consensus        25 ~~~iiGpSGsGKSTll~~i~GL~~p   49 (214)
T cd03297          25 VTGIFGASGAGKSTLLRCIAGLEKP   49 (214)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             9999999973599999999849999


No 339
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.20  E-value=0.0084  Score=37.57  Aligned_cols=27  Identities=22%  Similarity=0.345  Sum_probs=24.3

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             566866996798886899999999970
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      -.|.-+|+.||.|+||+.+|+.+|+.+
T Consensus        21 r~~HA~L~~G~~G~Gk~~la~~~a~~l   47 (324)
T PRK06871         21 RGHHALLFKADSGLGTEQLIRALAQWL   47 (324)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             954378768999978999999999998


No 340
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter.  The CCM family is involved in bacterial cytochrome c biogenesis.  Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH).  CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH.  The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.17  E-value=0.0036  Score=39.94  Aligned_cols=23  Identities=43%  Similarity=0.697  Sum_probs=21.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||.|||||-|.|+|++.+.
T Consensus        29 ~~l~G~NGsGKSTLlk~i~Gl~~   51 (201)
T cd03231          29 LQVTGPNGSGKTTLLRILAGLSP   51 (201)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCC
T ss_conf             99999999999999999966778


No 341
>PRK10744 phosphate transporter subunit; Provisional
Probab=96.16  E-value=0.0053  Score=38.88  Aligned_cols=24  Identities=25%  Similarity=0.635  Sum_probs=21.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             699679888689999999997078
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      +-++||+|||||-|+|.++++.+.
T Consensus        39 ~~liG~nGaGKSTLlk~i~gl~~l   62 (257)
T PRK10744         39 TAFIGPSGCGKSTLLRTFNKMYEL   62 (257)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             999999998199999999876512


No 342
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.14  E-value=0.0054  Score=38.81  Aligned_cols=58  Identities=21%  Similarity=0.324  Sum_probs=22.3

Q ss_pred             CCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE---EECHHHHHHHHHHH
Q ss_conf             25543345126-88615542467888764346889999999987---519689---98424999999999
Q gi|254780829|r  312 LLPEIQGRFPV-RVHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL---DFTEDSIDALADVA  374 (437)
Q Consensus       312 lipE~~GR~p~-~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L---~ft~~Al~~IA~~A  374 (437)
                      +.+--.|.+-+ -..+..++.+++.+..     ..+.|...+|.   .||+.+   ..+++.+.+.++.|
T Consensus       514 l~~p~~G~i~idg~~~~~~~~~~~r~~i-----~~v~Q~~~lf~gTi~eNi~~~~~~~~~~~i~~a~~~a  578 (694)
T TIGR03375       514 LYQPTEGSVLLDGVDIRQIDPADLRRNI-----GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELA  578 (694)
T ss_pred             CCCCCCCEEEECCEECCCCCHHHHHHHC-----EEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             7589988799898542549999997302-----1357677110746999984169999999999999981


No 343
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.14  E-value=0.0044  Score=39.38  Aligned_cols=54  Identities=15%  Similarity=0.305  Sum_probs=33.4

Q ss_pred             CCCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCEE---EECHHHHHHHHHHH
Q ss_conf             33451268-86155424678887643468899999999875---19689---98424999999999
Q gi|254780829|r  316 IQGRFPVR-VHLKSLNKSDFRLILTDTESNLILQYKELMKT---EGIIL---DFTEDSIDALADVA  374 (437)
Q Consensus       316 ~~GR~p~~-v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~---~~v~L---~ft~~Al~~IA~~A  374 (437)
                      -.|++-+= +.+..++.+++.+..     +.+.|-..+|..   ||+.+   ..|++.+.+.++.|
T Consensus       394 ~~G~I~idG~di~~~~~~~lr~~i-----~~V~Q~~~LF~~TI~eNi~~g~~~atdee~~~al~~a  454 (575)
T PRK11160        394 QQGEILLNGQPIASYSEAALRQAI-----SVVSQRVHLFSGTLRDNLLLAAPNATDEALIEVLQQV  454 (575)
T ss_pred             CCCEEEECCEECCCCCHHHHHHHH-----CCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf             998899998975638889998761-----3567776025886789987258987899999999753


No 344
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.13  E-value=0.0067  Score=38.20  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=21.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             699679888689999999997078
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      |-..||||+|||.+|+.|+..++-
T Consensus         2 IgI~G~sgsGKTT~a~~L~~~l~~   25 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQLGN   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf             898899988599999999998099


No 345
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=96.13  E-value=0.014  Score=36.04  Aligned_cols=37  Identities=35%  Similarity=0.628  Sum_probs=34.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf             6996798886899999999970787797143410121
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI   92 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~   92 (437)
                      |+|=|||=+|||-|||+|-..+.-||+...--.|.++
T Consensus         4 I~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~f~~~   40 (174)
T pfam07931         4 ILLNGGSSSGKSSIARALQDILDGPWLHFGVDAFVEA   40 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHH
T ss_conf             9974899888799999999847474676428588876


No 346
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12  E-value=0.0036  Score=39.97  Aligned_cols=24  Identities=42%  Similarity=0.703  Sum_probs=21.6

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             669967988868999999999707
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      -+-++||+|||||-|.+.+++...
T Consensus        32 ~~~iiGpsGsGKSTLl~~i~Gl~~   55 (220)
T cd03293          32 FVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999579999999975999


No 347
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.10  E-value=0.007  Score=38.08  Aligned_cols=23  Identities=30%  Similarity=0.651  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      |-..||||+|||.+|+.|+..+.
T Consensus         2 IgIaG~SgSGKTT~a~~L~~~l~   24 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLR   24 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
T ss_conf             89989897789999999999984


No 348
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.09  E-value=0.004  Score=39.65  Aligned_cols=28  Identities=25%  Similarity=0.400  Sum_probs=23.2

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             5668-669967988868999999999707
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.+. -+-++||+|||||-|+|.+++.+.
T Consensus        30 i~~GE~vaivG~nGsGKSTL~k~l~Gl~~   58 (279)
T PRK13635         30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLL   58 (279)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             87998999999999659999999972888


No 349
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=96.09  E-value=0.003  Score=40.43  Aligned_cols=28  Identities=32%  Similarity=0.586  Sum_probs=22.5

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             65668-66996798886899999999970
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ++.+. -+-++||||||||-|+|.|++..
T Consensus        34 ~i~~GE~l~ivGeSGsGKSTL~r~i~gl~   62 (266)
T PRK10419         34 TLKSGETVALLGRSGCGKSTLARLLVGLE   62 (266)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             88899899999999977999999996699


No 350
>cd01882 BMS1 Bms1.  Bms1 is an essential, evolutionarily conserved, nucleolar protein.  Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits.  Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit.  The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly.  It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.09  E-value=0.023  Score=34.73  Aligned_cols=39  Identities=33%  Similarity=0.570  Sum_probs=26.6

Q ss_pred             HHHCCCCCCC--CCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             8640864444--66566866996798886899999999970
Q gi|254780829|r   39 RRQQLPADLR--DELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        39 ~R~~~~~~~~--~e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ||...+.-.|  .|..|-=|-.+||||||||.|.|.|-+..
T Consensus        23 kk~hvp~vdr~~~epPP~vVavvGPpgvGKtTLiksLvk~y   63 (225)
T cd01882          23 KKLHVPVVDRTPEEPPPLVVAVVGPPGVGKTTLIKSLVKNY   63 (225)
T ss_pred             HHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             87626641358789999699998989977889999999998


No 351
>pfam10412 TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Probab=96.09  E-value=0.013  Score=36.32  Aligned_cols=47  Identities=36%  Similarity=0.482  Sum_probs=30.4

Q ss_pred             CCCCCCCCEEEECCCCCCHHHHHHH-HHHHH--CCCEEEEECC-CEEECCC
Q ss_conf             4665668669967988868999999-99970--7877971434-1012122
Q gi|254780829|r   48 RDELMPKNILLVGPTGVGKTAISRR-LARLA--GAPFIKVEVT-KFTEIGY   94 (437)
Q Consensus        48 ~~e~~psNiLLiGPtGtGKTlLAkt-LA~~l--~VPF~~~daT-~ftE~gy   94 (437)
                      ....++.|+|++||||+|||-.... +...+  +-+++..|.. +|++.+|
T Consensus        10 p~~~~~~H~lviG~tGsGKT~~i~~~i~~~~~~~~s~iv~DpKGe~~~~~~   60 (386)
T pfam10412        10 PRRSETQHILIVGTTGTGKTQALRELLDQIRARGDRAIIYDPTGTFVERFY   60 (386)
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
T ss_conf             788776758998899998887999999999977991999958736889875


No 352
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.08  E-value=0.0091  Score=37.36  Aligned_cols=35  Identities=31%  Similarity=0.450  Sum_probs=27.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf             699679888689999999997078779714341012
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE   91 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE   91 (437)
                      +.+.||+|+||+-|.|.|=..- -=.+++++|+=..
T Consensus         7 ~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p   41 (191)
T COG0194           7 IVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP   41 (191)
T ss_pred             EEEECCCCCCHHHHHHHHHHHC-CEEEEEEECCCCC
T ss_conf             9998998888899999998634-9379998526799


No 353
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively.  Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP.  HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM.  The two HisP subunits form a homodimer within the complex.  The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems.  All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria.  The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.07  E-value=0.0042  Score=39.52  Aligned_cols=23  Identities=30%  Similarity=0.715  Sum_probs=20.8

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             66996798886899999999970
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      =+-++||||||||-|.|.+++..
T Consensus        28 ~~~ivGpSGsGKSTLL~~i~gL~   50 (213)
T cd03262          28 VVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99999999844999999998199


No 354
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters.  PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  This PDR subfamily represents domain I of its (ABC-IM)2 organization.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07  E-value=0.0041  Score=39.57  Aligned_cols=45  Identities=27%  Similarity=0.375  Sum_probs=29.1

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCH
Q ss_conf             65668-669967988868999999999707877971434101212234310
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV   99 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DV   99 (437)
                      .+.|. =+.++||+|+|||-|.|.||+.+. |....+++    ..|-|.++
T Consensus        29 ~i~~Gei~~llG~nGsGKSTLl~~l~G~~~-~~~~~~G~----i~~~g~~~   74 (202)
T cd03233          29 VVKPGEMVLVLGRPGSGCSTLLKALANRTE-GNVSVEGD----IHYNGIPY   74 (202)
T ss_pred             EECCCEEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEE----EEECCEEC
T ss_conf             980984999998999988999999837878-98751379----99999994


No 355
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07  E-value=0.0042  Score=39.55  Aligned_cols=23  Identities=30%  Similarity=0.690  Sum_probs=21.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||+|||||-|+|.+++...
T Consensus        29 ~~iiG~SGsGKSTll~~i~gL~~   51 (235)
T cd03261          29 LAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999729999999975999


No 356
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.05  E-value=0.0066  Score=38.27  Aligned_cols=28  Identities=29%  Similarity=0.330  Sum_probs=25.0

Q ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6566866996798886899999999970
Q gi|254780829|r   50 ELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        50 e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ...|.-+|+.||.|+||+.+|+.+|+.+
T Consensus        16 ~Rl~HAyLf~Gp~G~GK~~~A~~~A~~L   43 (290)
T PRK05917         16 QKVPSAILLHGQDLSNLSQYAYELASLI   43 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             9966068768999865999999999998


No 357
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.04  E-value=0.0045  Score=39.34  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=21.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||+|||||-|+|.+++.+.
T Consensus        33 vaivG~nGsGKSTL~~~l~Gll~   55 (276)
T PRK13650         33 LSIIGHNGSGKSTTVRLIDGLLE   55 (276)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999879999999973889


No 358
>PRK13768 GTPase; Provisional
Probab=96.04  E-value=0.0065  Score=38.28  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=22.8

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6866996798886899999999970
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +..++.+||+|||||-+++++...+
T Consensus         2 ~~~~~ViGpaGSGKsT~~~~l~~~l   26 (253)
T PRK13768          2 MYIVFFLGTAGSGKTTLVGALSDWL   26 (253)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             7189998999998899999999999


No 359
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.04  E-value=0.0045  Score=39.35  Aligned_cols=22  Identities=36%  Similarity=0.604  Sum_probs=21.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +-++||+|||||-|+|.+++.+
T Consensus        37 vaiiG~nGsGKSTL~~~l~Gll   58 (283)
T PRK13640         37 TALIGHNGSGKSTISKLINGLL   58 (283)
T ss_pred             EEEECCCCCHHHHHHHHHHCCC
T ss_conf             9999999987999999996403


No 360
>pfam00519 PPV_E1_C Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508.
Probab=96.01  E-value=0.013  Score=36.30  Aligned_cols=30  Identities=27%  Similarity=0.562  Sum_probs=25.7

Q ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             56686-6996798886899999999970787
Q gi|254780829|r   51 LMPKN-ILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      +.|+| ++++|||-|||.+.+-.|=++++=-
T Consensus       259 ~PKknCivi~GPPnTGKS~F~mSLi~fL~G~  289 (432)
T pfam00519       259 IPKKNCLVIYGPPDTGKSMFCMSLIKFLGGK  289 (432)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf             9852469998999966768999999984986


No 361
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=96.01  E-value=0.025  Score=34.52  Aligned_cols=50  Identities=36%  Similarity=0.410  Sum_probs=37.5

Q ss_pred             CEECHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             30486899999999--9987788640864444665668669967988868999999999707
Q gi|254780829|r   19 YIIGQQDAKRAVAI--ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        19 ~VvGQ~~AKk~lav--av~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +=||=..|+.+|.-  .+++|=+|.+          .-|.|++||||.|||.|++.-++.-.
T Consensus        35 rWIgY~~A~~~L~~Le~Ll~~P~~~R----------mp~lLlvGdsnnGKT~Iv~rF~~~hp   86 (302)
T pfam05621        35 RWIGYPRAVEALNRLEALYAWPNKQR----------MPNLLLVGPTNNGKSMIVEKFRRAHP   86 (302)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCC----------CCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf             53277899999999999984686468----------87558870798878999999999679


No 362
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.00  E-value=0.0051  Score=38.98  Aligned_cols=30  Identities=33%  Similarity=0.474  Sum_probs=22.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHH---HCCCEEEEE
Q ss_conf             699679888689999999997---078779714
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARL---AGAPFIKVE   85 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~---l~VPF~~~d   85 (437)
                      .|+.||||||||.+|-..+-.   -+-|=+.+.
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis   34 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT   34 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             158768999999999999999987699789999


No 363
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.98  E-value=0.0054  Score=38.83  Aligned_cols=39  Identities=18%  Similarity=0.206  Sum_probs=26.4

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCCE
Q ss_conf             5668-6699679888689999999997078--7797143410
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAGA--PFIKVEVTKF   89 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~V--PF~~~daT~f   89 (437)
                      +.+. -+.++||+|||||-|+|.+++....  --+..++...
T Consensus        32 i~~Ge~vaiiG~sGsGKSTLl~ll~Gl~~p~~G~I~~~g~~i   73 (269)
T PRK13648         32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI   73 (269)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEC
T ss_conf             859989999999999799999999649799850999999999


No 364
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.98  E-value=0.0056  Score=38.72  Aligned_cols=29  Identities=24%  Similarity=0.607  Sum_probs=23.4

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             65668-669967988868999999999707
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.+. -+-++||+|||||.|.|.+++...
T Consensus        23 ~i~~Ge~~~liG~nGsGKSTll~~i~Gl~~   52 (240)
T PRK09493         23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             987998999999999809999999963899


No 365
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).    This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.97  E-value=0.0075  Score=37.87  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=29.7

Q ss_pred             CCE-EEECCCCCCHHHHHHHHHHHH--CCCEEEEECCCEEE
Q ss_conf             866-996798886899999999970--78779714341012
Q gi|254780829|r   54 KNI-LLVGPTGVGKTAISRRLARLA--GAPFIKVEVTKFTE   91 (437)
Q Consensus        54 sNi-LLiGPtGtGKTlLAktLA~~l--~VPF~~~daT~ftE   91 (437)
                      .+| =+-|+||||||-|-+.+||..  +.==+..|++.+-+
T Consensus        23 ~GvtAlFG~SGsGKTtli~~iaGL~rp~~G~i~l~G~~L~d   63 (361)
T TIGR02142        23 QGVTALFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGEVLFD   63 (361)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCEEEEC
T ss_conf             40687125899707899999873167566879988746205


No 366
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.97  E-value=0.0084  Score=37.55  Aligned_cols=28  Identities=43%  Similarity=0.571  Sum_probs=25.4

Q ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6566866996798886899999999970
Q gi|254780829|r   50 ELMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        50 e~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +-.|.-.|+.||.|+||+.+|+.+|+.+
T Consensus        18 ~rl~HA~L~~Gp~G~Gk~~~A~~~A~~l   45 (325)
T PRK08699         18 ERRPNAWLFVGKKGTGKTAFARFAAKAL   45 (325)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             4501179757999978999999999998


No 367
>KOG1970 consensus
Probab=95.95  E-value=0.006  Score=38.50  Aligned_cols=48  Identities=25%  Similarity=0.427  Sum_probs=33.3

Q ss_pred             CCCCE-EEECCCCCCHHHHHHHHHHHHCCCEEEE-ECCCEEECCCCCCCH
Q ss_conf             66866-9967988868999999999707877971-434101212234310
Q gi|254780829|r   52 MPKNI-LLVGPTGVGKTAISRRLARLAGAPFIKV-EVTKFTEIGYVGRNV   99 (437)
Q Consensus        52 ~psNi-LLiGPtGtGKTlLAktLA~~l~VPF~~~-daT~ftE~gyvG~DV   99 (437)
                      .+++| ||.||+|||||--.|-||++++.-..-= ..+.|-+..+++.+-
T Consensus       108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t  157 (634)
T KOG1970         108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNET  157 (634)
T ss_pred             CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             67607998579888713199999986480212304776656655545544


No 368
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=95.94  E-value=0.0072  Score=37.99  Aligned_cols=25  Identities=36%  Similarity=0.769  Sum_probs=22.0

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             6699679888689999999997078
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      .|++.||||+|||-|.+.++..+.-
T Consensus         1 ki~ITG~pGvGKTTli~kv~~~l~~   25 (168)
T pfam03266         1 RIFITGPPGVGKTTLVKKVIELLKS   25 (168)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             9899789998899999999999986


No 369
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.94  E-value=0.012  Score=36.45  Aligned_cols=39  Identities=33%  Similarity=0.589  Sum_probs=33.0

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHH------HHCCCEEEEECCCEEE
Q ss_conf             68669967988868999999999------7078779714341012
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLAR------LAGAPFIKVEVTKFTE   91 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~------~l~VPF~~~daT~ftE   91 (437)
                      .+-+||.||||.||.+||+++-.      -++-||+-+.|.++.-
T Consensus       208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrg  252 (531)
T COG4650         208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRG  252 (531)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf             697686468874366899999999988875378627886300047


No 370
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.94  E-value=0.0043  Score=39.44  Aligned_cols=29  Identities=31%  Similarity=0.536  Sum_probs=23.4

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             656686-69967988868999999999707
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.|.- +-++||+|+|||.|+|.+++.+.
T Consensus        28 ~v~~GEi~~iiG~nGaGKSTLl~~i~G~~~   57 (258)
T PRK11701         28 DLYPGEVLGIVGESGSGKTTLLNALSARLA   57 (258)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             887997999988899889999999856788


No 371
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.93  E-value=0.0055  Score=38.76  Aligned_cols=22  Identities=32%  Similarity=0.739  Sum_probs=20.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +.++||||||||-|-+-+|++.
T Consensus        34 vv~lGpSGcGKTTLLnl~AGf~   55 (259)
T COG4525          34 VVVLGPSGCGKTTLLNLIAGFV   55 (259)
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
T ss_conf             9997688865788999986275


No 372
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.92  E-value=0.0055  Score=38.76  Aligned_cols=23  Identities=39%  Similarity=0.676  Sum_probs=21.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||.|||||-|.|.|++.+.
T Consensus        28 v~liGpNGaGKSTLlk~l~Gll~   50 (246)
T cd03237          28 IGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99997999769999999977878


No 373
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.91  E-value=0.0059  Score=38.54  Aligned_cols=75  Identities=21%  Similarity=0.333  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHC--CCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC---CCCCCCCCEEEEC-
Q ss_conf             688999999998751--9689984249999999999840400123724679999998677621---2756877689985-
Q gi|254780829|r  342 ESNLILQYKELMKTE--GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID-  415 (437)
Q Consensus       342 k~~l~~q~~~lf~~~--~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~f---e~p~~~~~~v~Id-  415 (437)
                      +.+|-++|+.++...  ++.+.|-++-.+.|.++-..++      |     ..|-.-|++..|   |.|..+...+.|| 
T Consensus        74 CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~------g-----HFM~~~ll~SQfa~LE~P~~de~vi~idi  142 (161)
T COG3265          74 CSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARK------G-----HFMPASLLDSQFATLEEPGADEDVLTIDI  142 (161)
T ss_pred             CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCC------C-----CCCCHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf             278878899998545997389996388999999987605------6-----77888999989998358999988798648


Q ss_pred             ----HHHHHHHHHHHH
Q ss_conf             ----999998999998
Q gi|254780829|r  416 ----AEYVRLHIGDFP  427 (437)
Q Consensus       416 ----~~~V~~~l~~l~  427 (437)
                          +++|++-+.-+.
T Consensus       143 ~~~~e~vv~~~~~~l~  158 (161)
T COG3265         143 DQPPEEVVAQALAWLK  158 (161)
T ss_pred             CCCHHHHHHHHHHHHH
T ss_conf             9998999999999986


No 374
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.91  E-value=0.0078  Score=37.76  Aligned_cols=32  Identities=28%  Similarity=0.455  Sum_probs=23.8

Q ss_pred             CCEEEECCCCCCHHHHHHHHH----HHHCCCEEEEE
Q ss_conf             866996798886899999999----97078779714
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLA----RLAGAPFIKVE   85 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA----~~l~VPF~~~d   85 (437)
                      +.+|+.|+||||||.+|-...    +..+-|=+.+.
T Consensus        25 ~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyit   60 (501)
T PRK09302         25 RPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVT   60 (501)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             779998389999999999999999885599789998


No 375
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.89  E-value=0.0092  Score=37.31  Aligned_cols=35  Identities=31%  Similarity=0.452  Sum_probs=28.4

Q ss_pred             CCCC-EEEECCCCCCHHHHHHHHHHHHCCCEE-EEEC
Q ss_conf             6686-699679888689999999997078779-7143
Q gi|254780829|r   52 MPKN-ILLVGPTGVGKTAISRRLARLAGAPFI-KVEV   86 (437)
Q Consensus        52 ~psN-iLLiGPtGtGKTlLAktLA~~l~VPF~-~~da   86 (437)
                      .|-| +|+.||||||||-..-+.-..++-|.. ++..
T Consensus       256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti  292 (500)
T COG2804         256 RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI  292 (500)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             8970899968999988999999999862788508984


No 376
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.88  E-value=0.0068  Score=38.15  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=25.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH-------CCCE-EEEECCCEEEC
Q ss_conf             6996798886899999999970-------7877-97143410121
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA-------GAPF-IKVEVTKFTEI   92 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l-------~VPF-~~~daT~ftE~   92 (437)
                      |++.|++|+|||.|+|.+|-..       +.+| +...+.++.+.
T Consensus         3 i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~   47 (165)
T pfam05729         3 VILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRS   47 (165)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCC
T ss_conf             999827989899999999999986984369728999995670777


No 377
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.88  E-value=0.0058  Score=38.61  Aligned_cols=29  Identities=38%  Similarity=0.589  Sum_probs=23.3

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             656686-69967988868999999999707
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.+.- +-++||+|+|||-|.|.+++.+.
T Consensus        22 ~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~~   51 (205)
T cd03226          22 DLYAGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             886998999988999989999999956857


No 378
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.88  E-value=0.0058  Score=38.59  Aligned_cols=28  Identities=36%  Similarity=0.510  Sum_probs=22.9

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             65668-66996798886899999999970
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ++.|. -+.++||.|+|||-|.|.|++.+
T Consensus        33 ~v~~Ge~~~l~GpNGaGKTTLlr~l~Gl~   61 (214)
T PRK13543         33 HVDAGEALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             98189899999999987999999997697


No 379
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.88  E-value=0.0052  Score=38.93  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=21.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||+|||||-|+|.+++.+.
T Consensus        36 v~iiG~nGsGKSTLl~~l~GLl~   58 (287)
T PRK13637         36 VALIGHTGSGKSTLIQHLNGLLK   58 (287)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999399999999973998


No 380
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.87  E-value=0.0057  Score=38.65  Aligned_cols=23  Identities=35%  Similarity=0.606  Sum_probs=21.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.++||+|||||-|+|.|++.+.
T Consensus        39 vaivG~nGsGKSTLlk~l~Gll~   61 (273)
T PRK13632         39 VAILGHNGSGKSTISKILTGLLK   61 (273)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999869999999973877


No 381
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.87  E-value=0.0045  Score=39.31  Aligned_cols=27  Identities=33%  Similarity=0.673  Sum_probs=22.7

Q ss_pred             CCCC--EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             6686--69967988868999999999707
Q gi|254780829|r   52 MPKN--ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        52 ~psN--iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++++  +=|+||+|+|||.|-|.+|+...
T Consensus        25 i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~   53 (345)
T COG1118          25 IKSGELVALLGPSGAGKSTLLRIIAGLET   53 (345)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             06886899977898767889999857577


No 382
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.87  E-value=0.0086  Score=37.50  Aligned_cols=38  Identities=32%  Similarity=0.563  Sum_probs=35.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECC
Q ss_conf             69967988868999999999707877971434101212
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG   93 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~g   93 (437)
                      |+|=|+|=+|||-|||+|-..+.-||+....-.|.+|-
T Consensus         5 I~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~   42 (175)
T cd00227           5 IILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEAL   42 (175)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHC
T ss_conf             99868998988999999998476756884185898867


No 383
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.86  E-value=0.011  Score=36.70  Aligned_cols=38  Identities=32%  Similarity=0.516  Sum_probs=28.8

Q ss_pred             HHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             7788640864444665668669967988868999999999707
Q gi|254780829|r   36 NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        36 nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.|+++..     ..-.|.-.|+.||.|+||+.+|+.+|+.+.
T Consensus        10 ~~w~~l~~-----~~rl~HA~Lf~G~~G~GK~~lA~~~A~~Ll   47 (328)
T PRK05707         10 SLWQQLAG-----RGRHAHAYLLHGPAGIGKRALAERLAAFLL   47 (328)
T ss_pred             HHHHHHHH-----CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99999997-----798220464479998679999999999984


No 384
>PRK06547 hypothetical protein; Provisional
Probab=95.86  E-value=0.012  Score=36.52  Aligned_cols=31  Identities=29%  Similarity=0.593  Sum_probs=24.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHH-HCCCEEEEEC
Q ss_conf             699679888689999999997-0787797143
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARL-AGAPFIKVEV   86 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~-l~VPF~~~da   86 (437)
                      |+.=||+|+|||-||..||.. .+++-+..|-
T Consensus        18 VaIDG~sGaGKTTLA~~La~~~~~~~vvHmDD   49 (184)
T PRK06547         18 VLIDGRSGSGKTTLAGELAACWEGSQLVHLDD   49 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf             99868998888999999997457982897057


No 385
>pfam01202 SKI Shikimate kinase.
Probab=95.85  E-value=0.0072  Score=38.00  Aligned_cols=25  Identities=48%  Similarity=0.777  Sum_probs=23.4

Q ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             8886899999999970787797143
Q gi|254780829|r   62 TGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        62 tGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      .|||||-++|.||+.++.||+-.|.
T Consensus         1 mGsGKstigk~LA~~L~~~fiD~D~   25 (158)
T pfam01202         1 MGAGKTTIGRLLAKALGLPFIDTDQ   25 (158)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf             9897799999999996999788729


No 386
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=95.85  E-value=0.019  Score=35.33  Aligned_cols=19  Identities=42%  Similarity=0.768  Sum_probs=16.3

Q ss_pred             CCCCEEEECCCCCCHHHHH
Q ss_conf             6686699679888689999
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAIS   70 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLA   70 (437)
                      .-+|+|++-|||+||||=|
T Consensus        36 ~G~nvLiiAPTGsGKTeAA   54 (814)
T COG1201          36 SGENVLIIAPTGSGKTEAA   54 (814)
T ss_pred             CCCCEEEECCCCCCHHHHH
T ss_conf             8984699868999737999


No 387
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.85  E-value=0.0063  Score=38.38  Aligned_cols=27  Identities=19%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             56686-6996798886899999999970
Q gi|254780829|r   51 LMPKN-ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        51 ~~psN-iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +.|.- +.|+||+|||||.|+|.|++..
T Consensus        23 i~~Gei~~LvG~sGsGKSTL~~~l~Gl~   50 (520)
T TIGR03269        23 IEEGEVLGILGRSGAGKSVLMHVLRGMD   50 (520)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             9999899999999969999999996514


No 388
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota.  The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed.  This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways.  Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO.  Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.85  E-value=0.0067  Score=38.20  Aligned_cols=29  Identities=38%  Similarity=0.705  Sum_probs=23.3

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             656686-69967988868999999999707
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.+.. +-++||+|||||-|.|.+++.+.
T Consensus        23 ~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~   52 (211)
T cd03225          23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             884997999988999989999999964677


No 389
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=95.85  E-value=0.0072  Score=38.00  Aligned_cols=25  Identities=24%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             6996798886899999999970787
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      |=+-||||||||.||++|+..++--
T Consensus        37 IgIaG~pGSGKSTlA~~l~~~L~~~   61 (230)
T PRK09270         37 VGIAGPPGAGKSTLAETLWEALSQQ   61 (230)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             9998999889999999999998623


No 390
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.84  E-value=0.0044  Score=39.37  Aligned_cols=34  Identities=26%  Similarity=0.462  Sum_probs=24.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCE
Q ss_conf             6996798886899999999970787--797143410
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKF   89 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~f   89 (437)
                      +-|+||+|||||-|.|.|+++...-  =+..++...
T Consensus        48 ~~llGpsGsGKSTllr~i~Gl~~p~~G~I~i~G~di   83 (377)
T PRK11607         48 FALLGASGCGKSTLLRMLAGFEQPSAGQIMLDGVDL   83 (377)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEEC
T ss_conf             999999984899999999769999865999999998


No 391
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.84  E-value=0.0057  Score=38.65  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=21.5

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||+|||||-|+|.+++.+.
T Consensus        36 ~aiiG~sGsGKSTL~~~l~Gl~~   58 (277)
T PRK13642         36 VSIIGQNGSGKSTTARLIDGLFE   58 (277)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999689999999963899


No 392
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.84  E-value=0.0061  Score=38.48  Aligned_cols=22  Identities=36%  Similarity=0.584  Sum_probs=20.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +.++||.|+|||-|.|.+++.+
T Consensus        30 ~~l~G~NGaGKSTLlkli~Gl~   51 (200)
T PRK13540         30 LHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
T ss_conf             9998899987999999997785


No 393
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.83  E-value=0.0097  Score=37.16  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=22.9

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             5668-669967988868999999999707
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.+. -+.|+||.|||||-|+|.|++...
T Consensus        26 I~~Ge~vgLVG~NGsGKSTLl~iL~G~~~   54 (632)
T PRK11147         26 IEDNERVCLVGRNGAGKSTLMKILSGEVL   54 (632)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             98998999999999879999999838998


No 394
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.83  E-value=0.0057  Score=38.67  Aligned_cols=27  Identities=33%  Similarity=0.518  Sum_probs=22.2

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             5668-66996798886899999999970
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +.+. -+-++||+|||||-|.|.+++..
T Consensus        35 I~~GEiv~LiG~nGaGKSTLlr~i~Gl~   62 (257)
T PRK11247         35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             8799899999899888999999996589


No 395
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.83  E-value=0.0063  Score=38.38  Aligned_cols=28  Identities=36%  Similarity=0.688  Sum_probs=22.6

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             65668-66996798886899999999970
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ++.|. -+-++||+|||||-|+|.|++..
T Consensus        23 ~i~~Ge~~aliG~sGsGKSTLl~~l~gl~   51 (248)
T PRK11264         23 EVKPGEVVAIIGPSGSGKTTLLRCINLLE   51 (248)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             98799899999999980999999997589


No 396
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.82  E-value=0.006  Score=38.51  Aligned_cols=29  Identities=41%  Similarity=0.631  Sum_probs=23.9

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             656686-69967988868999999999707
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      .+.|.. +.++||.|||||-|.|.+++.+.
T Consensus        24 ~i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~   53 (206)
T PRK13539         24 TLAAGEALVLTGPNGSGKTTLLRLLAGLLP   53 (206)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             986994999989999989999999958878


No 397
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=95.82  E-value=0.017  Score=35.60  Aligned_cols=24  Identities=38%  Similarity=0.376  Sum_probs=20.9

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             866996798886899999999970
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ++.++.-|||+|||.++=.++..+
T Consensus        19 ~~~~i~~pTGsGKT~~~~~~i~~~   42 (103)
T pfam04851        19 KRGLIVMATGSGKTLTAAKLIARL   42 (103)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             986999589998799999999999


No 398
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.82  E-value=0.0062  Score=38.42  Aligned_cols=25  Identities=24%  Similarity=0.594  Sum_probs=22.0

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             6699679888689999999997078
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -+-++||+|||||-|.|.+++.+..
T Consensus        27 ~v~iiG~nGaGKSTLl~~i~Gll~p   51 (233)
T PRK10771         27 QVAILGPSGAGKSTLLNLIAGFLTP   51 (233)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             9999999998199999999659999


No 399
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.82  E-value=0.0062  Score=38.43  Aligned_cols=28  Identities=25%  Similarity=0.536  Sum_probs=22.9

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             65668-66996798886899999999970
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ++.+. =+-++||+|||||-|+|.+++.+
T Consensus        33 ~i~~GE~v~iiG~nGsGKSTL~r~l~gl~   61 (281)
T PRK13633         33 EVKKGEFLVILGHNGSGKSTIAKHMNALL   61 (281)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             88799899999999984999999997588


No 400
>cd01127 TrwB Bacterial conjugation protein TrwB,  ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=95.82  E-value=0.014  Score=36.16  Aligned_cols=51  Identities=24%  Similarity=0.357  Sum_probs=36.1

Q ss_pred             CCCCCCCEEEECCCCCCHHHHHHHHHH---HHCCCEEEEECC-CEEECCCC-CCCH
Q ss_conf             665668669967988868999999999---707877971434-10121223-4310
Q gi|254780829|r   49 DELMPKNILLVGPTGVGKTAISRRLAR---LAGAPFIKVEVT-KFTEIGYV-GRNV   99 (437)
Q Consensus        49 ~e~~psNiLLiGPtGtGKTlLAktLA~---~l~VPF~~~daT-~ftE~gyv-G~DV   99 (437)
                      ...+-.|+|++|+||+|||-....+-.   .-+-+.++.|.. +|++.+|- +.|+
T Consensus        38 ~~~e~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe~~~~fy~~~~d~   93 (410)
T cd01127          38 KDAEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSKFYRPATDI   93 (410)
T ss_pred             CCHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCE
T ss_conf             65202747998899998899999999999986990999958854999975447766


No 401
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.81  E-value=0.005  Score=39.03  Aligned_cols=39  Identities=23%  Similarity=0.224  Sum_probs=28.9

Q ss_pred             CCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf             46656686-6996798886899999999970787797143
Q gi|254780829|r   48 RDELMPKN-ILLVGPTGVGKTAISRRLARLAGAPFIKVEV   86 (437)
Q Consensus        48 ~~e~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF~~~da   86 (437)
                      .-++.|.- +=++|-|||||+.+|++|=+.+.-+..+++|
T Consensus        29 sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G   68 (539)
T COG1123          29 SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSG   68 (539)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCE
T ss_conf             4786489589998689888899999985548887864441


No 402
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.81  E-value=0.0063  Score=38.38  Aligned_cols=29  Identities=21%  Similarity=0.410  Sum_probs=23.2

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             656686-69967988868999999999707
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.|.. +.++||+|||||-|.+.+++...
T Consensus        20 ~i~~Ge~~~i~GpSGsGKSTLL~~i~gl~~   49 (206)
T TIGR03608        20 TIEKGKMVAIVGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             986998999987999709999999975999


No 403
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.81  E-value=0.0052  Score=38.94  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.1

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             669967988868999999999707
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      -+-++||+|||||.|+|.+++...
T Consensus        33 i~~iiG~sGsGKSTLl~~i~gl~~   56 (257)
T PRK10619         33 VISIIGSSGSGKSTFLRCINFLEK   56 (257)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999998999819999999965999


No 404
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.81  E-value=0.0062  Score=38.43  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=22.3

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             5668-66996798886899999999970
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +.+. -+-++||+|||||-|.|.+++..
T Consensus        32 i~~GE~v~iiG~sGsGKSTLl~~i~Gl~   59 (233)
T PRK11629         32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             8899899999999940999999996699


No 405
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system.  Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond.  Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond.  Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81  E-value=0.0062  Score=38.41  Aligned_cols=29  Identities=34%  Similarity=0.652  Sum_probs=23.3

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             65668-669967988868999999999707
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.+. -+-++||+|||||-|.|.+++...
T Consensus        23 ~i~~Ge~~~iiGpsGsGKSTLl~~i~gl~~   52 (241)
T cd03256          23 SINPGEFVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999998999999998339999999974999


No 406
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.80  E-value=0.0058  Score=38.59  Aligned_cols=28  Identities=25%  Similarity=0.466  Sum_probs=22.7

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             5668-669967988868999999999707
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.+. -+-++||+|||||-|+|.+++.+.
T Consensus        31 i~~Gei~~iiGpnGsGKSTLlk~i~Gl~~   59 (269)
T PRK11831         31 VPRGKITAIMGPSGIGKTTLLRLIGGQIA   59 (269)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             87998999993999759999999967988


No 407
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.79  E-value=0.017  Score=35.63  Aligned_cols=32  Identities=41%  Similarity=0.651  Sum_probs=23.8

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEC
Q ss_conf             66996798886899999999970---787797143
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLA---GAPFIKVEV   86 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l---~VPF~~~da   86 (437)
                      .+|+.||||+|||-|+.-+|..+   +..-+++++
T Consensus         1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~   35 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI   35 (165)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             98999899998999999999998763997999986


No 408
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155   This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase  and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=95.79  E-value=0.0073  Score=37.96  Aligned_cols=26  Identities=38%  Similarity=0.558  Sum_probs=23.0

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             66866996798886899999999970
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      .+|||++.|-||||||-+.|+|=++.
T Consensus       157 ~~knIii~GGTgSGKTTf~kal~~~I  182 (328)
T TIGR02788       157 SRKNIIISGGTGSGKTTFLKALVKEI  182 (328)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHCC
T ss_conf             38919999068971899999997327


No 409
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.78  E-value=0.011  Score=36.70  Aligned_cols=38  Identities=34%  Similarity=0.522  Sum_probs=29.7

Q ss_pred             HHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             788640864444665668669967988868999999999707
Q gi|254780829|r   37 RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        37 hy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +|.|.+..    .+-.|.-.|+.||.|+||..+|+++|+.+-
T Consensus         9 ~w~~l~~~----~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~ll   46 (342)
T PRK06964          9 DWNRLQAL----RARWPHALLLHGQAGIGKLAFAQHLAQGLL   46 (342)
T ss_pred             HHHHHHHC----CCCHHEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99999980----687130576579998679999999999983


No 410
>PRK05480 uridine kinase; Provisional
Probab=95.77  E-value=0.0099  Score=37.10  Aligned_cols=24  Identities=29%  Similarity=0.482  Sum_probs=21.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             699679888689999999997078
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      |...||||+|||.+|+.|+..++-
T Consensus         9 IgIaG~SgSGKTT~a~~L~~~l~~   32 (209)
T PRK05480          9 IGIAGGSGSGKTTVASTIYEELGD   32 (209)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             999899977899999999998086


No 411
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP.  Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77  E-value=0.0063  Score=38.36  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||+|||||-|.|.+|+...
T Consensus        27 ~~ilGpSGsGKSTLl~li~Gl~~   49 (211)
T cd03298          27 TAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999559999999976999


No 412
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.77  E-value=0.0073  Score=37.95  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=21.9

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             669967988868999999999707
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      -+-++||+|||||-|+|.+++.+.
T Consensus        35 ~~aiiG~nGsGKSTLl~~l~GLl~   58 (286)
T PRK13646         35 YYAIVGQTGSGKSTLIQNINALLK   58 (286)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999819999999970788


No 413
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor.  The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids.  RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family.  Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft.  RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%.  The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.76  E-value=0.0054  Score=38.83  Aligned_cols=28  Identities=32%  Similarity=0.484  Sum_probs=22.6

Q ss_pred             CCCCC--EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             56686--69967988868999999999707
Q gi|254780829|r   51 LMPKN--ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~psN--iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.++|  +=++||.|||||-|.|.|++.+.
T Consensus        22 ipk~GEi~gLiGpNGaGKSTLlk~i~Gll~   51 (255)
T cd03236          22 VPREGQVLGLVGPNGIGKSTALKILAGKLK   51 (255)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             898980999989999709999999967986


No 414
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2.  The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia.  Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole.  In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells.  CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.75  E-value=0.0092  Score=37.30  Aligned_cols=28  Identities=32%  Similarity=0.560  Sum_probs=23.3

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             5668-669967988868999999999707
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.|. -+-++||+|||||-|++.|.+++.
T Consensus        27 I~~Ge~vaIvG~sGsGKSTLl~lL~gl~~   55 (275)
T cd03289          27 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN   55 (275)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             87999999999999979999999960357


No 415
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.75  E-value=0.0068  Score=38.17  Aligned_cols=27  Identities=22%  Similarity=0.402  Sum_probs=22.6

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             5668-66996798886899999999970
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +.+. -+.++||+|||||-|+|.|++.+
T Consensus        28 i~~Ge~~~lvG~nGsGKSTL~~~l~Gl~   55 (513)
T PRK13549         28 VRAGEIVSLCGENGAGKSTLMKVLSGVY   55 (513)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             8899799998999972999999995678


No 416
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1).  NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters.  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.74  E-value=0.01  Score=36.97  Aligned_cols=29  Identities=34%  Similarity=0.461  Sum_probs=24.0

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             5668-6699679888689999999997078
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      +.|. -+-++||+|||||-|+|.|+++...
T Consensus        31 i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p   60 (207)
T cd03369          31 VKAGEKIGIVGRTGAGKSTLILALFRFLEA   60 (207)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf             869999999999998799999999987288


No 417
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function.  Barmotin belongs to the SMC protein family.  SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains.  Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins.  The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases.  The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.74  E-value=0.0086  Score=37.49  Aligned_cols=26  Identities=31%  Similarity=0.606  Sum_probs=20.8

Q ss_pred             CCCC-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6686-6996798886899999999970
Q gi|254780829|r   52 MPKN-ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        52 ~psN-iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      .|+| +=++||+|||||-|.+.++..+
T Consensus        20 ip~GitaIvGpsGsGKSTLl~~i~~~l   46 (197)
T cd03278          20 FPPGLTAIVGPNGSGKSNIIDAIRWVL   46 (197)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             389828999999998899999999874


No 418
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis.  The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes.  CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space.  In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.73  E-value=0.0084  Score=37.56  Aligned_cols=28  Identities=29%  Similarity=0.391  Sum_probs=22.9

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             5668-669967988868999999999707
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.|. -+-++||+|||||-|.|.+++++.
T Consensus        25 i~~Ge~~aivG~sGsGKSTLl~~l~G~~~   53 (178)
T cd03247          25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf             86999999999998759999999986176


No 419
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria.  Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73  E-value=0.0068  Score=38.14  Aligned_cols=45  Identities=33%  Similarity=0.535  Sum_probs=31.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE---------CCCCCCCHH
Q ss_conf             6996798886899999999970787--79714341012---------122343101
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE---------IGYVGRNVE  100 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE---------~gyvG~DVe  100 (437)
                      +-++||+|||||-|+|.|.+++...  -+.+|+....+         ++||..+..
T Consensus        30 v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~di~~~~~~~~r~~i~~v~Q~~~   85 (236)
T cd03253          30 VAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTV   85 (236)
T ss_pred             EEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHCEEEEECCCE
T ss_conf             99999999989999999743854887489999999231899999723789950780


No 420
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.72  E-value=0.011  Score=36.73  Aligned_cols=25  Identities=28%  Similarity=0.523  Sum_probs=22.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             6996798886899999999970787
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      ||..||||+|||-...++..+.+-+
T Consensus         4 iLitG~TGSGKTTtl~all~~i~~~   28 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYINKN   28 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             9998999997999999999853637


No 421
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.72  E-value=0.0048  Score=39.17  Aligned_cols=43  Identities=28%  Similarity=0.536  Sum_probs=27.8

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHH
Q ss_conf             65668-6699679888689999999997078779714341012122343101
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE  100 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVe  100 (437)
                      ++.+. -+=++|+||||||.|+|+|++... |   .+    =+..|-|.|+-
T Consensus        37 ~i~~GE~lgiVGeSGsGKSTL~~~l~gl~~-p---~~----G~I~~~G~dl~   80 (327)
T PRK11308         37 NLERGKTLAVVGESGCGKSTLARLLTMIET-P---TG----GELYYQGQDLL   80 (327)
T ss_pred             EECCCCEEEEECCCCHHHHHHHHHHHCCCC-C---CC----CEEEECCEECC
T ss_conf             988999999999983199999999956999-8---86----37998999557


No 422
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.  This family is also known as MRP (mulrtidrug resisitance-associated protein).  Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.72  E-value=0.0061  Score=38.45  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=20.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||+|||||-|++.+++++.
T Consensus        34 ~~IvG~sGsGKSTLl~~i~G~~~   56 (204)
T cd03250          34 VAIVGPVGSGKSSLLSALLGELE   56 (204)
T ss_pred             EEEECCCCCCHHHHHHHHCCCCC
T ss_conf             99999999858999999818952


No 423
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=95.72  E-value=0.0086  Score=37.51  Aligned_cols=24  Identities=33%  Similarity=0.444  Sum_probs=19.3

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             866996798886899999999970
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      .-+...||+|||||+||=+.|=.+
T Consensus        20 ~iv~~~GpAGtGKT~la~~~al~~   43 (205)
T pfam02562        20 DIVFGIGPAGTGKTYLAVAAAVDA   43 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             807998999860999999999999


No 424
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.71  E-value=0.0094  Score=37.24  Aligned_cols=43  Identities=26%  Similarity=0.424  Sum_probs=27.3

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCC
Q ss_conf             6699679888689999999997078779714341012122343
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR   97 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~   97 (437)
                      -|-++||.|||||-|+|.|++.+..--=.+....=...||+-.
T Consensus       347 ~ialvG~NGsGKSTLlk~l~G~l~p~~G~i~~g~~~~i~y~~Q  389 (632)
T PRK11147        347 KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQ  389 (632)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEHH
T ss_conf             7999889884277999986066689987799899870775515


No 425
>PRK10908 cell division protein FtsE; Provisional
Probab=95.70  E-value=0.0067  Score=38.19  Aligned_cols=45  Identities=18%  Similarity=0.471  Sum_probs=29.6

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHH
Q ss_conf             65668-669967988868999999999707877971434101212234310134
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI  102 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~  102 (437)
                      ++.+. -+-++||+|||||-|.|.+++....-    +    =+..|-|.|+...
T Consensus        24 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~----~----G~i~~~g~~i~~~   69 (222)
T PRK10908         24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPS----A----GKIWFSGHDITRL   69 (222)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC----C----EEEEECCEECCCC
T ss_conf             99699899999999807999999996599998----6----2999999998756


No 426
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.70  E-value=0.0067  Score=38.19  Aligned_cols=28  Identities=25%  Similarity=0.463  Sum_probs=23.5

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             5668-669967988868999999999707
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.+. -+-++||+|||||-|+|.+++.+.
T Consensus        17 i~~Ge~vaiiG~sGsGKSTLl~~l~GLl~   45 (276)
T PRK13634         17 IPSGSYVAIIGHTGSGKSTLLQHLNGLLK   45 (276)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             98998999999999699999999974999


No 427
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.69  E-value=0.011  Score=36.84  Aligned_cols=27  Identities=33%  Similarity=0.557  Sum_probs=23.5

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             668669967988868999999999707
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      .+..|...||||+|||.+++.+|..|.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             545999867998458999999999998


No 428
>cd03290 ABCC_SUR1_N The SUR domain 1.  The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains.  Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel.  Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism.  It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.69  E-value=0.008  Score=37.70  Aligned_cols=25  Identities=20%  Similarity=0.340  Sum_probs=22.2

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             6699679888689999999997078
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -+-++||+|||||-|.++|++.+..
T Consensus        29 ~~~IvG~sGsGKSTLl~~l~g~~~~   53 (218)
T cd03290          29 LTMIVGQVGCGKSSLLLAILGEMQT   53 (218)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             9999999998099999998555656


No 429
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.68  E-value=0.02  Score=35.13  Aligned_cols=29  Identities=21%  Similarity=0.349  Sum_probs=25.6

Q ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             65668669967988868999999999707
Q gi|254780829|r   50 ELMPKNILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~psNiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ...|.-+|+.||.|+||+.+|+.+|+.+-
T Consensus        22 ~rl~HA~L~~g~~G~Gk~~la~~la~~Ll   50 (319)
T PRK06090         22 ERIPGALLLQSDEGLGVESLVELFSHALL   50 (319)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99630676679998579999999999980


No 430
>PRK04328 hypothetical protein; Provisional
Probab=95.67  E-value=0.0094  Score=37.25  Aligned_cols=31  Identities=35%  Similarity=0.518  Sum_probs=22.4

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHH---CCCEEEE
Q ss_conf             866996798886899999999970---7877971
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLA---GAPFIKV   84 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~   84 (437)
                      +-+|+.||||||||.||-..+-.-   |-|=+++
T Consensus        25 s~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyi   58 (250)
T PRK04328         25 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYV   58 (250)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             6999982899998999999999998769977999


No 431
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.66  E-value=0.0079  Score=37.75  Aligned_cols=25  Identities=12%  Similarity=0.313  Sum_probs=13.4

Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             615542467888764346889999999987
Q gi|254780829|r  325 HLKSLNKSDFRLILTDTESNLILQYKELMK  354 (437)
Q Consensus       325 ~l~~L~~~~l~~IL~epk~~l~~q~~~lf~  354 (437)
                      .++.++.+++++-.     +++.|-..||.
T Consensus       386 di~~~~~~~lR~~i-----~~V~Qd~~LF~  410 (547)
T PRK10522        386 PVTAEQPEDYRKLF-----SAVFTDVHLFD  410 (547)
T ss_pred             ECCCCCHHHHHHHC-----EEECCCCCHHH
T ss_conf             99968999998541-----69857740457


No 432
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export.  They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins.  The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities.  The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65  E-value=0.0081  Score=37.66  Aligned_cols=24  Identities=38%  Similarity=0.732  Sum_probs=22.1

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             669967988868999999999707
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      -+.++||+|||||-|++.+++++.
T Consensus        30 ~i~ivG~sGsGKSTLl~ll~gl~~   53 (171)
T cd03228          30 KVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999839999999976775


No 433
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.62  E-value=0.0078  Score=37.77  Aligned_cols=29  Identities=28%  Similarity=0.415  Sum_probs=23.3

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             65668-669967988868999999999707
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.|. -+-++||+|+|||-|.|++++.+.
T Consensus        23 ~i~~Ge~~aliG~nGaGKSTLl~~i~G~l~   52 (273)
T PRK13547         23 RIEPGRVTALLGRNGAGKSTLLKVLAGELT   52 (273)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             998998999999999769999999956788


No 434
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.62  E-value=0.055  Score=32.27  Aligned_cols=44  Identities=27%  Similarity=0.348  Sum_probs=32.7

Q ss_pred             HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             87788640864444665668669967988868999999999707877971
Q gi|254780829|r   35 RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        35 ~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      |--|||++..      ..|=-||+=|.|||||..||--||.-||.+=++.
T Consensus       250 Y~lwR~ir~~------~~PiiILIGGaSGvGKSTlAseLA~RLGI~~VIs  293 (492)
T PRK12337        250 YRLLRVLRKP------PRPLHVLLGGVSGTGKSVLAAELAYRLGITRVVP  293 (492)
T ss_pred             HHHHHHHHCC------CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             9999997356------8876999607888668889999999609881025


No 435
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.62  E-value=0.0079  Score=37.73  Aligned_cols=44  Identities=27%  Similarity=0.500  Sum_probs=27.9

Q ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHHCCCEEEE-ECCCEEECCCCCCCHHH
Q ss_conf             56686-69967988868999999999707877971-43410121223431013
Q gi|254780829|r   51 LMPKN-ILLVGPTGVGKTAISRRLARLAGAPFIKV-EVTKFTEIGYVGRNVEQ  101 (437)
Q Consensus        51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF~~~-daT~ftE~gyvG~DVes  101 (437)
                      +.+.- +-++||+|+|||-|+|.|++.   |.... +|    +..|-|.|+..
T Consensus        29 i~~Gei~aiiG~nGsGKSTL~~~i~G~---~~~~~~~G----~I~~~G~~i~~   74 (252)
T CHL00131         29 INAGEIHAIMGPNGSGKSTLSKVIAGH---PAYTVLEG----DILFKGESILE   74 (252)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHCCC---CCCCCCCC----EEEECCEECCC
T ss_conf             879989999999999999999997278---76676642----59987727685


No 436
>KOG1051 consensus
Probab=95.62  E-value=0.019  Score=35.23  Aligned_cols=62  Identities=37%  Similarity=0.565  Sum_probs=49.3

Q ss_pred             CCCCCHHHHHHHHHHCEEC--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---C
Q ss_conf             6768889999986203048--6899999999998778864086444466566866996798886899999999970---7
Q gi|254780829|r    4 TFNFSPREIVSELDRYIIG--QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---G   78 (437)
Q Consensus         4 ~~~ltP~~i~~~Ld~~VvG--Q~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~   78 (437)
                      ..+|+|+.-.-.||-+ +|  +++.++++-|-.+    |           .|+|-+|||.+|+|||-++.-+|+-.   +
T Consensus       173 ~~dl~p~~~~gk~dPv-igr~deeirRvi~iL~R----r-----------~k~NPvLVG~~gvgktaiv~gla~ri~~G~  236 (898)
T KOG1051         173 GTDLTPRARQGKLDPV-IGRHDEEIRRVIEILSR----K-----------TKNNPVLVGEPGVGKTAIVEGLAQRIATGD  236 (898)
T ss_pred             CCCCCHHHHCCCCCCC-CCCCHHHHHHHHHHHHC----C-----------CCCCCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             6456724433687886-58852889999999814----6-----------789966983687772168999998766178


Q ss_pred             CCE
Q ss_conf             877
Q gi|254780829|r   79 APF   81 (437)
Q Consensus        79 VPF   81 (437)
                      ||-
T Consensus       237 vp~  239 (898)
T KOG1051         237 VPE  239 (898)
T ss_pred             CCC
T ss_conf             885


No 437
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.62  E-value=0.032  Score=33.80  Aligned_cols=64  Identities=23%  Similarity=0.368  Sum_probs=40.7

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCEEE
Q ss_conf             0486899999999998778864086444466566866996798886899999999970-78779714341012
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA-GAPFIKVEVTKFTE   91 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l-~VPF~~~daT~ftE   91 (437)
                      +.|.+++...+--.+    |.    +..+.+..+.=+||+||+|+||+-||+.|-+-+ ..|+...+++..-|
T Consensus        60 ffGme~~i~~iV~~~----ks----AA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~y~~Y~i~gsPm~e  124 (358)
T pfam08298        60 FFGMEETIERIVNYF----RH----AAQGLEERKQILYLLGPVGGGKSSLAERLKKLLELVPIYALKGSPVFE  124 (358)
T ss_pred             CCCHHHHHHHHHHHH----HH----HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             001599999999999----99----972367210589997789877589999999872058648844897778


No 438
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.62  E-value=0.0079  Score=37.75  Aligned_cols=29  Identities=31%  Similarity=0.453  Sum_probs=23.1

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             656686-69967988868999999999707
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      .+.|.- +-++||+|||||-|.|.+++...
T Consensus        32 ~i~~GE~v~ivG~sGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         32 VVKRGETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999998999999998589999999966999


No 439
>PRK13695 putative NTPase; Provisional
Probab=95.61  E-value=0.013  Score=36.33  Aligned_cols=27  Identities=33%  Similarity=0.479  Sum_probs=23.4

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             686699679888689999999997078
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      +-.|++.||||+|||-|.+.+...+.-
T Consensus         3 ~~kI~iTG~PGvGKTTli~Kv~~~L~~   29 (174)
T PRK13695          3 ALRIGITGMPGVGKTTLVLKIAELLAR   29 (174)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf             429998789998899999999999863


No 440
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.  This family is also known as MRP (mulrtidrug resisitance-associated protein).  Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear.  The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed.  MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.59  E-value=0.0093  Score=37.27  Aligned_cols=29  Identities=34%  Similarity=0.532  Sum_probs=23.8

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             5668-6699679888689999999997078
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      +.|. -+-++||+|||||-|+|.|++....
T Consensus        27 i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p   56 (221)
T cd03244          27 IKPGEKVGIVGRTGSGKSSLLLALFRLVEL   56 (221)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             869989999999999899999999679718


No 441
>PTZ00301 uridine kinase; Provisional
Probab=95.57  E-value=0.01  Score=36.95  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      |-..||||||||.+|+.++.++.
T Consensus         6 IgIaGgSgSGKTT~a~~i~~~l~   28 (210)
T PTZ00301          6 IGISGASGSGKSSLSTNIVSELM   28 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99968876789999999999987


No 442
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.57  E-value=0.0092  Score=37.32  Aligned_cols=29  Identities=41%  Similarity=0.563  Sum_probs=23.5

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             65668-669967988868999999999707
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.|. -+-++||.|+|||-|.|.+++.+.
T Consensus        23 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~   52 (204)
T PRK13538         23 TLNAGELVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             987998999999999859999999976888


No 443
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57  E-value=0.0098  Score=37.14  Aligned_cols=24  Identities=42%  Similarity=0.686  Sum_probs=21.9

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             669967988868999999999707
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      -+.++||+|+|||-|.|.+++...
T Consensus        27 ~~~i~G~nGaGKSTLl~~l~gl~~   50 (157)
T cd00267          27 IVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999987889998999999958847


No 444
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1.  The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia.  Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole.  In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells.  CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.56  E-value=0.0092  Score=37.31  Aligned_cols=26  Identities=23%  Similarity=0.309  Sum_probs=22.6

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             66996798886899999999970787
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      -+-++||||||||-|++.|++++...
T Consensus        65 ~vaIVG~sGSGKSTLl~lL~gl~~p~   90 (282)
T cd03291          65 MLAITGSTGSGKTSLLMLILGELEPS   90 (282)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf             99999999981999999995787278


No 445
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2.  A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.55  E-value=0.0091  Score=37.34  Aligned_cols=28  Identities=25%  Similarity=0.470  Sum_probs=23.1

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             5668-669967988868999999999707
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.|. -+-++||+|||||-|++.+.++..
T Consensus        27 i~~G~~v~ivG~sGsGKSTLl~ll~gl~~   55 (220)
T cd03245          27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             87999999999999859999999967254


No 446
>KOG0478 consensus
Probab=95.54  E-value=0.031  Score=33.85  Aligned_cols=98  Identities=21%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-------CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf             0486899999999998778864086444466566-------866996798886899999999970787797143410121
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-------KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI   92 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~p-------sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~   92 (437)
                      |-|-|+-||.+=-.+         -++.+.+..+       .||||+|-|||||+-|.+.+++.+-= =++.+|--=+++
T Consensus       431 Iye~edvKkglLLqL---------fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pR-g~yTSGkGsSav  500 (804)
T KOG0478         431 IYELEDVKKGLLLQL---------FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPR-GVYTSGKGSSAV  500 (804)
T ss_pred             HHCCCCHHHHHHHHH---------HCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-CEEECCCCCCHH
T ss_conf             534422666677887---------5687632233444245522899469986789999999974775-404058763022


Q ss_pred             ---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             ---22343101346788876521278998565498888688
Q gi|254780829|r   93 ---GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA  130 (437)
Q Consensus        93 ---gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~  130 (437)
                         -||-.|.+.-  .++..+ ++.--+--|+.|++.+++.
T Consensus       501 GLTayVtrd~dtk--qlVLes-GALVLSD~GiCCIDEFDKM  538 (804)
T KOG0478         501 GLTAYVTKDPDTR--QLVLES-GALVLSDNGICCIDEFDKM  538 (804)
T ss_pred             CCEEEEEECCCCC--EEEEEC-CCEEECCCCEEECHHHHHH
T ss_conf             0035677657655--466504-8489728965771123333


No 447
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.54  E-value=0.0087  Score=37.46  Aligned_cols=28  Identities=29%  Similarity=0.560  Sum_probs=22.9

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             65668-66996798886899999999970
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ++.|. =+.++||+|+|||-|+|.|++.+
T Consensus        26 ~i~~Gei~~liG~nGaGKSTL~~~l~G~~   54 (501)
T PRK10762         26 NVYPGRVMALVGENGAGKSTLMKVLTGIY   54 (501)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             99899699998999982999999995799


No 448
>PRK13544 consensus
Probab=95.53  E-value=0.0091  Score=37.35  Aligned_cols=28  Identities=36%  Similarity=0.508  Sum_probs=23.1

Q ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             56686-69967988868999999999707
Q gi|254780829|r   51 LMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.|.- +-|+||.|+|||-|.|.+|+...
T Consensus        24 i~~Gei~~l~G~NGsGKSTLl~~i~Gl~~   52 (208)
T PRK13544         24 AKQNSLTLVIGNNGSGKTSLLRLLAGLIP   52 (208)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             82994999999999989999999958806


No 449
>cd03288 ABCC_SUR2 The SUR domain 2.  The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family.  Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel.  Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism.  It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.53  E-value=0.011  Score=36.74  Aligned_cols=34  Identities=24%  Similarity=0.365  Sum_probs=25.7

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCC
Q ss_conf             6699679888689999999997078--779714341
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGA--PFIKVEVTK   88 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~V--PF~~~daT~   88 (437)
                      -+-++||+|||||-|++.|.++...  =-+.+|+..
T Consensus        49 ~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg~d   84 (257)
T cd03288          49 KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGID   84 (257)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEE
T ss_conf             999999999819999999960566788889999899


No 450
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.52  E-value=0.0087  Score=37.47  Aligned_cols=28  Identities=36%  Similarity=0.616  Sum_probs=22.5

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             656686-6996798886899999999970
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ++.|.. +-++||+|+|||-|+|++++.-
T Consensus        23 ~i~~Gei~~iiG~nGaGKSTLl~~i~G~~   51 (248)
T PRK09580         23 EVRPGEVHAIMGPNGSGKSTLSATLAGRE   51 (248)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             98499799999999999999999983775


No 451
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.52  E-value=0.0095  Score=37.21  Aligned_cols=24  Identities=25%  Similarity=0.530  Sum_probs=21.8

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             669967988868999999999707
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      =+-++||+|||||-|+|.+++.+.
T Consensus        30 ~vaiiG~nGsGKSTLl~~l~Gll~   53 (275)
T PRK13639         30 MIAILGPNGAGKSTLFLHFNGILK   53 (275)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999649999999973989


No 452
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.52  E-value=0.013  Score=36.35  Aligned_cols=27  Identities=30%  Similarity=0.571  Sum_probs=22.4

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             5668-66996798886899999999970
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +.|. -+.|+||.|||||-|+|.||+..
T Consensus        30 i~~Ge~vgLvG~NGaGKSTLlriLaG~~   57 (556)
T PRK11819         30 FFPGAKIGVLGLNGAGKSTLLRIMAGVD   57 (556)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             9689899999999971999999984799


No 453
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.51  E-value=0.0085  Score=37.53  Aligned_cols=19  Identities=42%  Similarity=0.690  Sum_probs=16.0

Q ss_pred             CCEEEECCCCCCHHHHHHH
Q ss_conf             8669967988868999999
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRR   72 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAkt   72 (437)
                      +|+|+.+|||+|||+.+=.
T Consensus         1 ~~~lv~~ptGsGKT~~~~~   19 (144)
T cd00046           1 RDVLLAAPTGSGKTLAALL   19 (144)
T ss_pred             CCEEEECCCCCHHHHHHHH
T ss_conf             9999988997179999999


No 454
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.51  E-value=0.0091  Score=37.33  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=21.5

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             669967988868999999999707
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      -+-++||+|||||-|+|.+++.+.
T Consensus        33 ~~aiiG~NGsGKSTLl~~l~Gl~~   56 (273)
T PRK13647         33 KTAILGPNGAGKSTLLLHLNGIYT   56 (273)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999759999999966988


No 455
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.50  E-value=0.0089  Score=37.39  Aligned_cols=23  Identities=26%  Similarity=0.660  Sum_probs=21.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||+|+|||-|+|.+++.+.
T Consensus        33 ~aliG~NGaGKSTLl~~i~Gll~   55 (277)
T PRK13652         33 IAVIGPNGAGKSTLFKHFNGILK   55 (277)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999479999999966999


No 456
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane.  The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.50  E-value=0.0098  Score=37.13  Aligned_cols=28  Identities=25%  Similarity=0.598  Sum_probs=22.1

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             656686-6996798886899999999970
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ++.+.. +-++||+|||||-|.+.+++..
T Consensus        23 ~i~~Ge~v~i~GpSGsGKSTLl~~i~gl~   51 (214)
T cd03292          23 SISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf             98599899999799953999999996298


No 457
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein.  In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor.  This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export.  The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD).  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48  E-value=0.014  Score=36.05  Aligned_cols=41  Identities=29%  Similarity=0.530  Sum_probs=29.5

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE
Q ss_conf             5668-66996798886899999999970787--79714341012
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE   91 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE   91 (437)
                      +.|. -+-++||+|||||-|++.|++++...  =+.+|+..+++
T Consensus        26 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~   69 (229)
T cd03254          26 IKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRD   69 (229)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf             87999999999999809999999966866787389999999541


No 458
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.47  E-value=0.0094  Score=37.24  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=21.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +-++||+|||||-|+|.+++.+
T Consensus        40 ~aIiG~nGsGKSTL~~~l~Gll   61 (289)
T PRK13645         40 TCVIGTTGSGKSTMIQLTNGLI   61 (289)
T ss_pred             EEEECCCCCHHHHHHHHHHCCC
T ss_conf             9999999957999999996598


No 459
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.47  E-value=0.009  Score=37.37  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=22.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf             6996798886899999999970787
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAP   80 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VP   80 (437)
                      +.++||+|||||.++++|.+.+.-+
T Consensus        45 vaLvGeSGSGKSTl~~~l~gll~~~   69 (623)
T PRK10261         45 LAIVGESGSGKSVTALALMRLLEQA   69 (623)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf             9999899978999999997798788


No 460
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.46  E-value=0.018  Score=35.41  Aligned_cols=29  Identities=31%  Similarity=0.520  Sum_probs=24.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             69967988868999999999707877971
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      |..-|+||||||-+||.|+..++++++.+
T Consensus        11 IgIaG~SgSGKTTv~~~l~~~~~~~~~~~   39 (218)
T COG0572          11 IGIAGGSGSGKTTVAKELSEQLGVEKVVV   39 (218)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf             99867987788999999999828675247


No 461
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1.  In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD.  MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.46  E-value=0.013  Score=36.43  Aligned_cols=44  Identities=27%  Similarity=0.480  Sum_probs=31.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE---------CCCCCCCH
Q ss_conf             6996798886899999999970787--79714341012---------12234310
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE---------IGYVGRNV   99 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE---------~gyvG~DV   99 (437)
                      +-++||||||||-|++.|.++....  -+.+|+....+         ++||..+.
T Consensus        32 iaIvG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~   86 (238)
T cd03249          32 VALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEP   86 (238)
T ss_pred             EEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCC
T ss_conf             9999999998999999982386188518999999923189999974069991589


No 462
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.46  E-value=0.012  Score=36.50  Aligned_cols=32  Identities=28%  Similarity=0.470  Sum_probs=22.8

Q ss_pred             CCEEEECCCCCCHHHHHHHHH--HHH--CCCEEEEE
Q ss_conf             866996798886899999999--970--78779714
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLA--RLA--GAPFIKVE   85 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA--~~l--~VPF~~~d   85 (437)
                      +-+|+.||||||||.||-..+  +.+  +-|-++++
T Consensus        20 s~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis   55 (231)
T pfam06745        20 RVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVT   55 (231)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             699998589725999999999999986589689998


No 463
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters.  This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc.  The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor.  The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri.  Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.45  E-value=0.011  Score=36.89  Aligned_cols=24  Identities=29%  Similarity=0.599  Sum_probs=21.8

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             669967988868999999999707
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      -+-++||.|+|||-|.|.+++.+.
T Consensus        27 ~~~liGpNGaGKSTllk~i~Gl~~   50 (213)
T cd03235          27 FLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999999999869999999976878


No 464
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=95.45  E-value=0.01  Score=37.00  Aligned_cols=19  Identities=42%  Similarity=0.574  Sum_probs=16.6

Q ss_pred             CCCEEEECCCCCCHHHHHH
Q ss_conf             6866996798886899999
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISR   71 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAk   71 (437)
                      -+|+++.+|||+|||+.+-
T Consensus        14 g~~~iv~~pTGsGKT~~~~   32 (167)
T pfam00270        14 GKDVLVQAPTGSGKTLAFL   32 (167)
T ss_pred             CCCEEEECCCCCCHHHHHH
T ss_conf             9978998899975899999


No 465
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.44  E-value=0.0096  Score=37.20  Aligned_cols=24  Identities=38%  Similarity=0.527  Sum_probs=21.6

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             669967988868999999999707
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      -+.|+||+|||||-|+|.|++.+.
T Consensus        31 ~~~LvG~NGaGKSTL~k~l~G~l~   54 (490)
T PRK10938         31 SWAFVGSNGSGKSALARALAGELP   54 (490)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999997999779999999956998


No 466
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.44  E-value=0.011  Score=36.87  Aligned_cols=25  Identities=20%  Similarity=0.470  Sum_probs=22.0

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             6699679888689999999997078
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~V   79 (437)
                      -+-++||+|||||-|++.|++.+.-
T Consensus        54 ~vaIIG~nGsGKSTL~~~l~Gll~p   78 (320)
T PRK13631         54 IYFIIGNSGSGKSTLVTHFNGLIKS   78 (320)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf             9999949998499999999758889


No 467
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.43  E-value=0.0094  Score=37.25  Aligned_cols=29  Identities=34%  Similarity=0.617  Sum_probs=23.6

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             65668-669967988868999999999707
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.+. -+-++||.|||||-|.|++++.+.
T Consensus        29 ~I~~Ge~~~iiGpNGaGKSTLlk~i~Gll~   58 (265)
T PRK10253         29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMT   58 (265)
T ss_pred             EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             985997999999988399999999974988


No 468
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.41  E-value=0.019  Score=35.25  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      |=..|+||+|||.||+.|...+.
T Consensus         2 IgIaG~S~SGKTTla~~L~~~l~   24 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
T ss_conf             89968888759999999999879


No 469
>PRK08233 hypothetical protein; Provisional
Probab=95.38  E-value=0.016  Score=35.73  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             66996798886899999999970
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      =|-.-|+||+|||.||++|+..+
T Consensus         5 IIgIaGgSgSGKTtla~~l~~~l   27 (182)
T PRK08233          5 IITIAAVSGGGKTTLTERLTHKL   27 (182)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHC
T ss_conf             99996888678999999999974


No 470
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport.  Other members of this system include the MetP permease and  the MetQ substrate binding protein.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37  E-value=0.0095  Score=37.21  Aligned_cols=28  Identities=21%  Similarity=0.373  Sum_probs=22.1

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             5668-669967988868999999999707
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.+. -+-++||||||||-|+|.+++...
T Consensus        28 i~~Ge~~~ivG~SGsGKSTllr~i~gL~~   56 (233)
T cd03258          28 VPKGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999988980589999999967999


No 471
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.36  E-value=0.022  Score=34.89  Aligned_cols=25  Identities=32%  Similarity=0.640  Sum_probs=23.3

Q ss_pred             CCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6866996798886899999999970
Q gi|254780829|r   53 PKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        53 psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      -.|||.-||||.|||--|++||.+.
T Consensus       263 aeGILIAG~PGaGKsTFaqAlAefy  287 (604)
T COG1855         263 AEGILIAGAPGAGKSTFAQALAEFY  287 (604)
T ss_pred             HCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             1646995699997468999999999


No 472
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.35  E-value=0.012  Score=36.64  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.6

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             669967988868999999999707
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      =+-++||+|+|||-|++.+++.+.
T Consensus        34 ~~aiiG~NGaGKSTLl~~i~Gll~   57 (285)
T PRK13636         34 VTAILGGNGAGKSTLFQNLNGILK   57 (285)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             999999999809999999965988


No 473
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.35  E-value=0.013  Score=36.34  Aligned_cols=43  Identities=35%  Similarity=0.560  Sum_probs=33.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC-CCEEEEECCCEEECCCCCCCHHHH
Q ss_conf             69967988868999999999707-877971434101212234310134
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG-APFIKVEVTKFTEIGYVGRNVEQI  102 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~-VPF~~~daT~ftE~gyvG~DVes~  102 (437)
                      -=|+|||||||+-+-|++-++-+ +|=+.++|    |+-|-|.|+-+.
T Consensus        36 TAlIGPSGcGKST~LR~lNRmndl~~~~r~~G----~v~~~g~ni~~~   79 (253)
T COG1117          36 TALIGPSGCGKSTLLRCLNRMNDLIPGARVEG----EVLLDGKNIYDP   79 (253)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE----EEEECCEECCCC
T ss_conf             99888988678889999875411566656878----998888243577


No 474
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=95.34  E-value=0.017  Score=35.55  Aligned_cols=37  Identities=38%  Similarity=0.503  Sum_probs=29.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECC
Q ss_conf             69967988868999999999707877971434101212
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG   93 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~g   93 (437)
                      |+|.|+=|+|||.++|.+++.++++= .+.-.+|+=+-
T Consensus        18 i~L~G~LGaGKTtfvr~i~~~lg~~~-~V~SPTF~lv~   54 (123)
T pfam02367        18 VLLSGDLGAGKTTFVRGLAKGLGITG-NVTSPTFTLVN   54 (123)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCCEEEEE
T ss_conf             99988877889999999999859988-73799558899


No 475
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea.  Only very few species lack representatives of the siderophore family transporters.  The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake.  The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA.  The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme.  A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.34  E-value=0.012  Score=36.50  Aligned_cols=45  Identities=27%  Similarity=0.480  Sum_probs=29.9

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHH
Q ss_conf             65668-669967988868999999999707877971434101212234310134
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI  102 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~  102 (437)
                      ++.+. -+-++||+|||||-|.|.+++... |       .=-+.-|-|.++...
T Consensus        21 ~i~~Ge~~~liG~nGsGKTTLl~~i~G~~~-~-------~~G~I~~~g~~i~~~   66 (180)
T cd03214          21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLK-P-------SSGEILLDGKDLASL   66 (180)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCC-C-------CCCEEEECCEECCCC
T ss_conf             886997999998999889999999957989-9-------872899999998969


No 476
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.34  E-value=0.021  Score=34.93  Aligned_cols=48  Identities=33%  Similarity=0.411  Sum_probs=34.5

Q ss_pred             CCC--EEEECCCCCCHHHHHHHHHHHHC--CCEEEEECCCEE--------ECCCCCCCHH
Q ss_conf             686--69967988868999999999707--877971434101--------2122343101
Q gi|254780829|r   53 PKN--ILLVGPTGVGKTAISRRLARLAG--APFIKVEVTKFT--------EIGYVGRNVE  100 (437)
Q Consensus        53 psN--iLLiGPtGtGKTlLAktLA~~l~--VPF~~~daT~ft--------E~gyvG~DVe  100 (437)
                      ++|  +.|+||.|+|||-|.|.|++...  ---+.+++-.+.        .+||+-++..
T Consensus        29 ~~Gei~gllG~NGAGKTTllk~l~Gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~   88 (293)
T COG1131          29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPS   88 (293)
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHCEEEEEECCCC
T ss_conf             289599998999998999999996797788649999586275126765052999947877


No 477
>cd03221 ABCF_EF-3 ABCF_EF-3  Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth.  EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site.  The reaction requires ATP hydrolysis.  EF-3 contains two ATP nucleotide binding sequence (NBS) motifs.  NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.33  E-value=0.012  Score=36.60  Aligned_cols=28  Identities=32%  Similarity=0.475  Sum_probs=22.9

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             5668-669967988868999999999707
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.|. -+-++||.|+|||-|.|.|++.+.
T Consensus        23 i~~ge~~~l~G~NGsGKTTl~~~l~G~~~   51 (144)
T cd03221          23 INPGDRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             87999999998999849999999848988


No 478
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.31  E-value=0.012  Score=36.64  Aligned_cols=28  Identities=29%  Similarity=0.450  Sum_probs=23.1

Q ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             56686-69967988868999999999707
Q gi|254780829|r   51 LMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.+.- +-++||+|||||-|+|.+++.+.
T Consensus        29 I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~   57 (288)
T PRK13643         29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQ   57 (288)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             85998999999999479999999974888


No 479
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.31  E-value=0.012  Score=36.46  Aligned_cols=22  Identities=41%  Similarity=0.819  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +-++||+|||||-|.|.+++..
T Consensus        31 ~~iiG~nGaGKSTLl~~l~gl~   52 (242)
T PRK11124         31 LVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
T ss_conf             9999999971999999996588


No 480
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.30  E-value=0.091  Score=30.87  Aligned_cols=54  Identities=24%  Similarity=0.497  Sum_probs=35.8

Q ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHH--CCCEEEEECCCEEE---------CCCCCCCHHHHHH
Q ss_conf             56686-6996798886899999999970--78779714341012---------1223431013467
Q gi|254780829|r   51 LMPKN-ILLVGPTGVGKTAISRRLARLA--GAPFIKVEVTKFTE---------IGYVGRNVEQIIR  104 (437)
Q Consensus        51 ~~psN-iLLiGPtGtGKTlLAktLA~~l--~VPF~~~daT~ftE---------~gyvG~DVes~i~  104 (437)
                      +.|.. +=.+||||+||+-|||.|-+..  --=-+..|+-++-+         .||-=.|||--..
T Consensus       359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G  424 (580)
T COG4618         359 LQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG  424 (580)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCHHHHCCCHHHHCCCCCCCCCCCEECCC
T ss_conf             658866788788876577899999811356787377562645127988851131727654300577


No 481
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.28  E-value=0.022  Score=34.88  Aligned_cols=22  Identities=32%  Similarity=0.527  Sum_probs=19.4

Q ss_pred             EECCCCCCHHHHHHHHHHHHCC
Q ss_conf             9679888689999999997078
Q gi|254780829|r   58 LVGPTGVGKTAISRRLARLAGA   79 (437)
Q Consensus        58 LiGPtGtGKTlLAktLA~~l~V   79 (437)
                      ..|+||||||.+|+.|+..++-
T Consensus         4 IaG~sgSGKST~a~~l~~~l~~   25 (220)
T cd02025           4 IAGSVAVGKSTTARVLQALLSR   25 (220)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
T ss_conf             7889987799999999998600


No 482
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217   Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=95.27  E-value=0.011  Score=36.74  Aligned_cols=41  Identities=34%  Similarity=0.568  Sum_probs=30.5

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHH
Q ss_conf             6686699679888689999999997078779714341012122343101
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE  100 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVe  100 (437)
                      ..-|-|++|||=||||-|-|=||+.+        +|=+.+.|.-|.-|+
T Consensus       122 ~~~NTLiIsPPq~GKTTlLRDlaR~~--------StG~~~~~~~g~KVg  162 (282)
T TIGR02858       122 RVLNTLIISPPQCGKTTLLRDLARIL--------STGISKLGLKGKKVG  162 (282)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHH--------HCCCCCCCCCCCCEE
T ss_conf             44678888688988510488898886--------078542468997469


No 483
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.27  E-value=0.013  Score=36.29  Aligned_cols=28  Identities=36%  Similarity=0.662  Sum_probs=22.8

Q ss_pred             CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             5668-669967988868999999999707
Q gi|254780829|r   51 LMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +.+. -+-++||.|+|||-|.|.+++...
T Consensus        27 i~~Gei~~LiGpNGaGKSTLlk~I~Gl~~   55 (251)
T PRK09544         27 LKPGKILTLLGPNGAGKSTLVRVVLGLVA   55 (251)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             87997999998999889999999966888


No 484
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622   DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=95.26  E-value=0.028  Score=34.22  Aligned_cols=27  Identities=33%  Similarity=0.580  Sum_probs=24.0

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             566866996798886899999999970
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      -.+.-.||.||.|+||..+|..+|+-+
T Consensus        12 r~~HA~LF~G~~G~Gk~~~A~~~A~~l   38 (216)
T TIGR00678        12 RLAHAYLFTGPEGVGKELLALALAKAL   38 (216)
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             788612544488874899999999998


No 485
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.26  E-value=0.013  Score=36.33  Aligned_cols=23  Identities=39%  Similarity=0.732  Sum_probs=21.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||.|+|||-|.|++++.+.
T Consensus        31 ~~liGpNGaGKSTLlk~i~Gl~~   53 (255)
T PRK11231         31 TALIGPNGCGKSTLLKCFARLLT   53 (255)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999819999999975988


No 486
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes.  This PDR subfamily represents domain I of its (ABC-IM)2 organization.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26  E-value=0.014  Score=36.22  Aligned_cols=27  Identities=33%  Similarity=0.418  Sum_probs=21.6

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHH
Q ss_conf             65668-6699679888689999999997
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARL   76 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~   76 (437)
                      ++.|. -+.++||+|+|||-|.|.|++.
T Consensus        29 ~i~~Ge~~~llGpnGaGKSTLl~~l~g~   56 (192)
T cd03232          29 YVKPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             EEECCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf             9928839999999999889999998379


No 487
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.26  E-value=0.017  Score=35.66  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=16.3

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf             668669967988868999999999
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLAR   75 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~   75 (437)
                      .|+..|.+|-+||.==+|.=.+|.
T Consensus        85 ~~~~~l~~GnSGTt~RlL~glla~  108 (662)
T PRK11860         85 VKKADLFLGNAGTAMRPLTAALAL  108 (662)
T ss_pred             CCCCEEECCCCHHHHHHHHHHHHC
T ss_conf             998657737847899999999985


No 488
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.25  E-value=0.017  Score=35.62  Aligned_cols=29  Identities=31%  Similarity=0.689  Sum_probs=23.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             69967988868999999999707877971
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAGAPFIKV   84 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~   84 (437)
                      |=.=||.||||+-+||.||+.++.+|+..
T Consensus       287 IAIDGPAgSGKSTvAK~lA~~L~~~yLDT  315 (512)
T PRK13477        287 IAIDGPAGAGKSTVTRAVAKKLGLLYLDT  315 (512)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCEECC
T ss_conf             99867875787899999999819968624


No 489
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.  The nucleotide binding domain shows the highest similarity between all members of the family.  ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23  E-value=0.014  Score=36.17  Aligned_cols=45  Identities=29%  Similarity=0.560  Sum_probs=32.2

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE---------CCCCCCCH
Q ss_conf             66996798886899999999970787--79714341012---------12234310
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE---------IGYVGRNV   99 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE---------~gyvG~DV   99 (437)
                      -+-++||+|||||-|.|.|.+....-  -+.+|++...+         .+||..+.
T Consensus        30 ~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~   85 (234)
T cd03251          30 TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDV   85 (234)
T ss_pred             EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCC
T ss_conf             99999899982999999996676678868999999966089999973179993689


No 490
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup.  This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols.  ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules.  The nucleotide-binding domain shows the highest similarity between all members of the family.   ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22  E-value=0.011  Score=36.78  Aligned_cols=44  Identities=39%  Similarity=0.628  Sum_probs=29.0

Q ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHH
Q ss_conf             56686-69967988868999999999707877971434101212234310134
Q gi|254780829|r   51 LMPKN-ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI  102 (437)
Q Consensus        51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~  102 (437)
                      +.+.- +=++||.|||||.|.+.+++... |       +--+..|-|.|+...
T Consensus        23 i~~Gei~~iiGpnGaGKSTl~~~i~Gl~~-p-------~~G~I~~~g~~i~~~   67 (213)
T cd03259          23 VEPGEFLALLGPSGCGKTTLLRLIAGLER-P-------DSGEILIDGRDVTGV   67 (213)
T ss_pred             ECCCCEEEEECCCCCHHHHHHHHHHCCCC-C-------CCEEEEECCEECCCC
T ss_conf             88998999999999739999999975999-8-------970899999998889


No 491
>cd04157 Arl6 Arl6 subfamily.  Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases.  Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development.  Arl6 is also believed to have a role in cilia or flagella function.  Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p.  Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation.  At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism.  Older literature suggests that A
Probab=95.21  E-value=0.017  Score=35.64  Aligned_cols=20  Identities=50%  Similarity=0.687  Sum_probs=18.7

Q ss_pred             CEEEECCCCCCHHHHHHHHH
Q ss_conf             66996798886899999999
Q gi|254780829|r   55 NILLVGPTGVGKTAISRRLA   74 (437)
Q Consensus        55 NiLLiGPtGtGKTlLAktLA   74 (437)
                      ||||+|++|+|||-|.+.+-
T Consensus         1 ~Il~lGl~~sGKTtil~~l~   20 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLK   20 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHH
T ss_conf             99999999998899999997


No 492
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.20  E-value=0.079  Score=31.25  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=27.2

Q ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHC--CCEEEEEC
Q ss_conf             668669967988868999999999707--87797143
Q gi|254780829|r   52 MPKNILLVGPTGVGKTAISRRLARLAG--APFIKVEV   86 (437)
Q Consensus        52 ~psNiLLiGPtGtGKTlLAktLA~~l~--VPF~~~da   86 (437)
                      .++||+.+||||+|||-+.+++..+..  ...++++-
T Consensus       142 ~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEd  178 (312)
T COG0630         142 ARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIED  178 (312)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf             6994999888888649599999863785221899525


No 493
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I; InterPro: IPR011775    This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll . This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. It is also found in certain archaea not known to make chlorins.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0006779 porphyrin biosynthetic process.
Probab=95.20  E-value=0.035  Score=33.57  Aligned_cols=43  Identities=35%  Similarity=0.640  Sum_probs=38.7

Q ss_pred             CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             304868999999999987788640864444665668--66996798886899999999970
Q gi|254780829|r   19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK--NILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps--NiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      -||||++=|-+|=-.|                |.|+  |||..|-=||||--=.||||-+|
T Consensus         5 AIVGQ~emKlAllL~v----------------idP~IGGVmvmGdRGTgKSTavRALAalL   49 (340)
T TIGR02030         5 AIVGQEEMKLALLLTV----------------IDPKIGGVMVMGDRGTGKSTAVRALAALL   49 (340)
T ss_pred             EEECHHHHHHHHHHEE----------------ECCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             5641688877775200----------------06885628886778983568999999749


No 494
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains.  The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence.  This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.20  E-value=0.017  Score=35.51  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=19.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             6996798886899999999970
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l   77 (437)
                      +.++||+|+|||-|.+.+++.+
T Consensus        25 taivG~NGaGKSTLl~~i~~~l   46 (204)
T cd03240          25 TLIVGQNGAGKTTIIEALKYAL   46 (204)
T ss_pred             EEEECCCCCCHHHHHHHHHHCC
T ss_conf             9999899999999999986304


No 495
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.20  E-value=0.014  Score=36.18  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             69967988868999999999707
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      +-++||+|+|||-|.|.|++...
T Consensus        40 ~~liG~NGaGKSTLl~~l~gl~~   62 (265)
T PRK10575         40 TGLIGHNGSGKSTLLKMLGRHQP   62 (265)
T ss_pred             EEEECCCCCHHHHHHHHHHCCCC
T ss_conf             99999999809999999956889


No 496
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.19  E-value=0.16  Score=29.32  Aligned_cols=74  Identities=26%  Similarity=0.148  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHHHHCEECH-HHHHHHHHHHHHHHHH-----HHCCC---C-CCCCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf             688899999862030486-8999999999987788-----64086---4-444665668669967988868999999999
Q gi|254780829|r    6 NFSPREIVSELDRYIIGQ-QDAKRAVAIALRNRWR-----RQQLP---A-DLRDELMPKNILLVGPTGVGKTAISRRLAR   75 (437)
Q Consensus         6 ~ltP~~i~~~Ld~~VvGQ-~~AKk~lavav~nhy~-----R~~~~---~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~   75 (437)
                      .+||.+.++.+=.-=-.| |.|-...+-++=.=|.     +...+   . -.|....|+|+-|-||-|+|||.|.-.-=.
T Consensus         8 ~~sp~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~   87 (367)
T COG1485           8 TMSPVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYE   87 (367)
T ss_pred             CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             77989999975056778888678999999999999862644455521110036888883588889978649999999986


Q ss_pred             HHCC
Q ss_conf             7078
Q gi|254780829|r   76 LAGA   79 (437)
Q Consensus        76 ~l~V   79 (437)
                      .+-+
T Consensus        88 ~lp~   91 (367)
T COG1485          88 SLPG   91 (367)
T ss_pred             HCCC
T ss_conf             5876


No 497
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.14  E-value=0.015  Score=35.90  Aligned_cols=29  Identities=31%  Similarity=0.571  Sum_probs=23.1

Q ss_pred             CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             65668-669967988868999999999707
Q gi|254780829|r   50 ELMPK-NILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.+. -+-++||.|+|||-|.|.+++.+.
T Consensus        24 ~i~~Gei~~liGpNGaGKSTLlk~i~Gl~~   53 (257)
T PRK13548         24 TLRPGEVVAILGPNGAGKSTLLRALSGELP   53 (257)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             986998999999999879999999856757


No 498
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.12  E-value=0.015  Score=35.88  Aligned_cols=29  Identities=28%  Similarity=0.381  Sum_probs=23.6

Q ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             656686-69967988868999999999707
Q gi|254780829|r   50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG   78 (437)
Q Consensus        50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~   78 (437)
                      ++.+.- +-++||.|+|||-|.|.|++.+.
T Consensus        23 ~i~~Gei~~liGpNGaGKSTLlk~l~Gl~~   52 (271)
T PRK13638         23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             983897999999999809999999966888


No 499
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.10  E-value=0.021  Score=34.99  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=24.8

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             566866996798886899999999970
Q gi|254780829|r   51 LMPKNILLVGPTGVGKTAISRRLARLA   77 (437)
Q Consensus        51 ~~psNiLLiGPtGtGKTlLAktLA~~l   77 (437)
                      ..|..+|+.||.|+||..+|+++|+.+
T Consensus        22 rl~HA~L~~G~~G~Gk~~la~~~a~~l   48 (334)
T PRK07993         22 RGHHALLIQALPGMGDDALIYALSRYL   48 (334)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             810467547999988999999999998


No 500
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.09  E-value=0.016  Score=35.83  Aligned_cols=21  Identities=38%  Similarity=0.855  Sum_probs=0.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHH
Q ss_conf             699679888689999999997
Q gi|254780829|r   56 ILLVGPTGVGKTAISRRLARL   76 (437)
Q Consensus        56 iLLiGPtGtGKTlLAktLA~~   76 (437)
                      +.++||||||||-|-|.|.+.
T Consensus        31 v~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          31 VVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999899999888999999778


Done!