Query gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 437
No_of_seqs 143 out of 2529
Neff 7.7
Searched_HMMs 39220
Date Sun May 29 18:59:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780829.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00390 hslU heat shock prot 100.0 0 0 877.9 30.4 430 7-437 1-463 (463)
2 PRK05201 hslU ATP-dependent pr 100.0 0 0 859.7 35.5 430 5-437 2-442 (442)
3 COG1220 HslU ATP-dependent pro 100.0 0 0 803.8 33.5 432 5-437 2-444 (444)
4 TIGR00382 clpX ATP-dependent C 100.0 0 0 750.8 9.1 342 8-426 91-450 (452)
5 PRK05342 clpX ATP-dependent pr 100.0 0 0 692.9 17.9 343 7-427 61-406 (411)
6 KOG0745 consensus 100.0 0 0 662.3 15.7 349 7-420 134-528 (564)
7 COG1219 ClpX ATP-dependent pro 100.0 0 0 661.1 12.0 345 7-428 50-396 (408)
8 TIGR01241 FtsH_fam ATP-depende 100.0 0 0 469.8 5.0 358 19-403 60-429 (505)
9 CHL00176 ftsH cell division pr 100.0 0 0 337.3 9.9 348 19-385 178-532 (631)
10 PRK10733 hflB ATP-dependent me 100.0 0 0 342.7 4.2 347 19-385 153-508 (644)
11 KOG0734 consensus 100.0 0 0 318.6 11.1 359 5-380 291-655 (752)
12 COG0465 HflB ATP-dependent Zn 100.0 1.5E-44 0 308.2 5.8 364 5-385 130-505 (596)
13 KOG0731 consensus 100.0 1.6E-43 0 301.6 6.2 346 18-379 311-663 (774)
14 TIGR02639 ClpA ATP-dependent C 100.0 1E-32 2.5E-37 231.6 11.7 268 10-415 489-773 (774)
15 CHL00095 clpC Clp protease ATP 100.0 1.3E-31 3.2E-36 224.5 14.7 284 10-416 501-803 (823)
16 PRK10865 protein disaggregatio 100.0 4.4E-31 1.1E-35 220.9 17.2 268 11-416 561-848 (857)
17 TIGR03345 VI_ClpV1 type VI sec 100.0 1.2E-31 3E-36 224.7 13.1 272 10-415 558-851 (852)
18 COG0542 clpA ATP-binding subun 100.0 3.6E-31 9.1E-36 221.5 15.1 275 9-417 482-775 (786)
19 TIGR03346 chaperone_ClpB ATP-d 100.0 1.4E-30 3.6E-35 217.7 15.6 268 11-416 558-845 (852)
20 PRK11034 clpA ATP-dependent Cl 100.0 7.3E-31 1.9E-35 219.5 13.8 270 9-415 449-734 (758)
21 PRK03992 proteasome-activating 99.9 3.2E-26 8.2E-31 189.4 7.2 246 19-272 133-378 (390)
22 COG1222 RPT1 ATP-dependent 26S 99.9 3.2E-26 8.1E-31 189.4 2.5 211 52-269 184-394 (406)
23 TIGR01242 26Sp45 26S proteasom 99.9 1.3E-25 3.2E-30 185.6 5.3 207 52-265 155-361 (364)
24 COG1223 Predicted ATPase (AAA+ 99.8 2.3E-21 6E-26 157.9 6.5 159 8-179 106-270 (368)
25 KOG1051 consensus 99.8 2E-20 5E-25 151.9 9.3 284 10-417 554-853 (898)
26 KOG0730 consensus 99.8 1.6E-20 4E-25 152.5 7.4 218 19-253 435-658 (693)
27 CHL00195 ycf46 Ycf46; Provisio 99.8 1.7E-19 4.4E-24 145.8 6.7 189 51-250 257-447 (491)
28 KOG0733 consensus 99.8 3.2E-19 8.1E-24 144.1 6.0 193 51-253 221-417 (802)
29 KOG0733 consensus 99.7 5.9E-19 1.5E-23 142.3 3.9 192 52-253 544-739 (802)
30 KOG0652 consensus 99.7 5.3E-19 1.4E-23 142.6 0.3 204 52-262 204-407 (424)
31 KOG0738 consensus 99.7 2.4E-17 6.1E-22 131.9 6.9 145 11-164 193-349 (491)
32 KOG0729 consensus 99.7 1.3E-17 3.3E-22 133.6 3.9 212 52-271 210-422 (435)
33 COG0464 SpoVK ATPases of the A 99.7 2.4E-16 6.1E-21 125.4 9.6 221 20-251 244-466 (494)
34 pfam07724 AAA_2 AAA domain (Cd 99.6 3.9E-17 1E-21 130.5 2.2 68 54-128 4-85 (168)
35 KOG0736 consensus 99.6 1E-16 2.6E-21 127.9 4.2 101 53-159 705-805 (953)
36 KOG0728 consensus 99.6 1.1E-16 2.8E-21 127.6 2.6 140 52-198 180-319 (404)
37 TIGR01243 CDC48 AAA family ATP 99.6 3.6E-15 9.3E-20 117.7 9.2 223 19-252 542-766 (980)
38 KOG0727 consensus 99.6 7.5E-16 1.9E-20 122.2 4.7 137 52-198 188-327 (408)
39 KOG0726 consensus 99.6 4.8E-16 1.2E-20 123.4 2.3 207 51-264 217-423 (440)
40 KOG0737 consensus 99.6 1.5E-14 3.7E-19 113.8 8.7 182 51-245 125-309 (386)
41 PRK13341 recombination factor 99.6 3.6E-13 9.2E-18 104.8 15.5 78 5-113 20-100 (726)
42 KOG0735 consensus 99.6 1E-14 2.6E-19 114.8 7.0 151 20-181 669-821 (952)
43 pfam05496 RuvB_N Holliday junc 99.5 6.1E-14 1.6E-18 109.8 9.9 70 5-88 16-85 (234)
44 TIGR01243 CDC48 AAA family ATP 99.5 1E-14 2.6E-19 114.8 5.6 159 52-220 239-397 (980)
45 KOG0651 consensus 99.5 3.1E-14 8E-19 111.7 5.9 126 51-184 164-292 (388)
46 PRK13342 recombination factor 99.5 6.8E-13 1.7E-17 103.0 12.0 66 4-88 4-72 (417)
47 PRK00080 ruvB Holliday junctio 99.4 1.4E-12 3.5E-17 101.0 10.2 74 6-93 18-91 (328)
48 TIGR02903 spore_lon_C ATP-depe 99.4 9E-12 2.3E-16 95.7 14.2 245 20-423 157-428 (616)
49 KOG0740 consensus 99.4 2.2E-13 5.6E-18 106.2 4.9 150 19-176 154-303 (428)
50 CHL00181 cbbX CbbX; Provisiona 99.4 1E-10 2.6E-15 88.9 16.2 89 8-99 13-111 (287)
51 KOG0730 consensus 99.4 3E-12 7.7E-17 98.8 8.2 217 21-250 187-404 (693)
52 PRK10787 DNA-binding ATP-depen 99.3 1.6E-10 4.1E-15 87.6 15.5 94 9-112 313-416 (784)
53 pfam00004 AAA ATPase family as 99.3 6.2E-12 1.6E-16 96.8 7.0 114 56-177 1-115 (131)
54 COG0466 Lon ATP-dependent Lon 99.3 7.2E-10 1.8E-14 83.4 16.3 104 312-425 479-583 (782)
55 KOG0741 consensus 99.3 1.2E-11 3.1E-16 94.8 7.1 192 53-249 256-457 (744)
56 PRK13765 ATP-dependent proteas 99.3 4.4E-09 1.1E-13 78.3 19.8 46 16-77 29-74 (637)
57 TIGR00635 ruvB Holliday juncti 99.3 7.2E-11 1.8E-15 89.9 10.7 69 15-93 2-70 (305)
58 TIGR00763 lon ATP-dependent pr 99.3 1.8E-10 4.6E-15 87.3 12.7 245 13-402 406-663 (941)
59 TIGR00368 TIGR00368 Mg chelata 99.2 3.8E-12 9.6E-17 98.2 3.3 44 18-77 194-237 (505)
60 KOG0739 consensus 99.2 7.1E-12 1.8E-16 96.4 3.7 149 19-179 134-285 (439)
61 cd00009 AAA The AAA+ (ATPases 99.2 4E-11 1E-15 91.6 7.2 62 21-96 1-65 (151)
62 COG2255 RuvB Holliday junction 99.2 2.6E-10 6.6E-15 86.3 9.7 77 3-93 16-92 (332)
63 PRK13407 bchI magnesium chelat 99.1 4.1E-09 1E-13 78.5 13.5 43 19-77 9-53 (334)
64 COG2256 MGS1 ATPase related to 99.1 2.1E-09 5.3E-14 80.4 10.8 119 4-172 15-140 (436)
65 COG0714 MoxR-like ATPases [Gen 99.0 7.3E-10 1.9E-14 83.3 7.4 70 8-93 14-83 (329)
66 COG1224 TIP49 DNA helicase TIP 99.0 5.3E-10 1.3E-14 84.3 6.6 72 6-90 31-104 (450)
67 pfam06068 TIP49 TIP49 C-termin 99.0 1.1E-09 2.8E-14 82.2 7.0 72 5-89 15-88 (395)
68 KOG2028 consensus 99.0 8.6E-09 2.2E-13 76.4 11.3 70 5-90 130-202 (554)
69 PRK05563 DNA polymerase III su 99.0 1E-08 2.7E-13 75.9 10.6 48 19-79 17-64 (541)
70 PRK06305 DNA polymerase III su 98.9 2.4E-08 6.2E-13 73.5 11.5 49 19-80 18-66 (462)
71 COG0606 Predicted ATPase with 98.9 1.1E-09 2.9E-14 82.1 4.1 44 18-77 179-222 (490)
72 PRK06647 DNA polymerase III su 98.9 1.1E-08 2.9E-13 75.7 9.2 48 19-79 17-64 (560)
73 KOG0732 consensus 98.9 2E-09 5E-14 80.6 5.0 206 52-267 298-509 (1080)
74 pfam01078 Mg_chelatase Magnesi 98.9 1.5E-09 3.7E-14 81.4 4.2 43 19-77 4-46 (207)
75 TIGR02881 spore_V_K stage V sp 98.8 1.8E-07 4.6E-12 67.8 13.5 73 312-397 161-235 (261)
76 PRK08451 DNA polymerase III su 98.8 2.3E-08 5.8E-13 73.7 8.7 48 19-79 15-62 (523)
77 PRK07270 DNA polymerase III su 98.8 3.4E-08 8.6E-13 72.6 9.2 49 19-80 16-64 (557)
78 PRK06674 DNA polymerase III su 98.8 4.1E-08 1E-12 72.0 9.4 49 19-80 17-65 (563)
79 PRK07133 DNA polymerase III su 98.8 2.8E-07 7E-12 66.6 13.0 48 19-79 19-66 (718)
80 PRK09862 putative ATP-dependen 98.8 6.2E-09 1.6E-13 77.3 4.5 43 19-77 192-234 (506)
81 PRK05896 DNA polymerase III su 98.8 1.3E-07 3.4E-12 68.7 10.9 48 19-79 17-64 (613)
82 PRK04195 replication factor C 98.7 2.6E-08 6.7E-13 73.2 6.7 62 20-90 16-77 (403)
83 PRK00411 cdc6 cell division co 98.7 4.5E-06 1.2E-10 58.7 18.1 66 17-92 29-99 (394)
84 CHL00081 chlI Mg-protoporyphyr 98.7 1.6E-08 4.2E-13 74.6 5.5 48 19-82 13-69 (347)
85 TIGR02397 dnaX_nterm DNA polym 98.7 1.6E-07 4.2E-12 68.1 10.6 48 20-80 16-63 (363)
86 PRK07764 DNA polymerase III su 98.7 8E-07 2E-11 63.6 12.8 48 19-79 16-63 (775)
87 PRK12402 replication factor C 98.7 4.4E-08 1.1E-12 71.8 6.1 47 20-80 17-63 (337)
88 PRK08691 DNA polymerase III su 98.6 2.1E-07 5.4E-12 67.4 8.8 48 19-79 17-64 (704)
89 PRK07003 DNA polymerase III su 98.6 1.8E-07 4.5E-12 67.9 8.4 49 19-80 17-65 (816)
90 KOG2004 consensus 98.6 1.1E-06 2.9E-11 62.7 11.7 53 54-110 439-499 (906)
91 KOG0742 consensus 98.6 3.3E-07 8.5E-12 66.1 8.6 110 54-174 385-496 (630)
92 pfam07726 AAA_3 ATPase family 98.6 5E-08 1.3E-12 71.4 4.4 37 55-91 1-37 (131)
93 PRK06645 DNA polymerase III su 98.6 8.1E-07 2.1E-11 63.6 10.3 125 19-179 22-174 (507)
94 PRK12323 DNA polymerase III su 98.6 3.5E-07 9E-12 66.0 8.2 48 19-79 17-64 (721)
95 PRK07994 DNA polymerase III su 98.5 3.4E-06 8.6E-11 59.6 12.4 49 19-80 17-65 (643)
96 PRK08853 DNA polymerase III su 98.5 7.2E-07 1.8E-11 64.0 8.4 48 19-79 17-64 (717)
97 COG1474 CDC6 Cdc6-related prot 98.5 0.00011 2.9E-09 49.7 18.8 74 20-110 19-97 (366)
98 pfam07728 AAA_5 AAA domain (dy 98.5 1.3E-07 3.3E-12 68.8 3.4 38 55-92 1-39 (139)
99 PRK05057 aroK shikimate kinase 98.4 5.2E-07 1.3E-11 64.8 6.1 49 52-103 3-51 (172)
100 PRK00440 rfc replication facto 98.4 9.6E-07 2.4E-11 63.1 6.5 49 15-78 14-62 (318)
101 TIGR00382 clpX ATP-dependent C 98.4 6E-08 1.5E-12 71.0 0.3 82 220-305 198-292 (452)
102 TIGR03015 pepcterm_ATPase puta 98.4 1.4E-05 3.5E-10 55.6 12.0 90 313-426 176-266 (269)
103 PRK00131 aroK shikimate kinase 98.3 7.2E-07 1.8E-11 63.9 5.0 36 51-86 2-37 (175)
104 PRK08770 DNA polymerase III su 98.3 1.9E-05 4.8E-10 54.8 12.3 48 19-79 17-64 (663)
105 PRK05648 DNA polymerase III su 98.3 6.8E-06 1.7E-10 57.6 10.0 48 19-79 17-64 (705)
106 pfam06309 Torsin Torsin. This 98.3 2.4E-06 6.1E-11 60.6 7.5 77 6-92 13-89 (127)
107 pfam00308 Bac_DnaA Bacterial d 98.3 2.7E-05 7E-10 53.7 12.8 66 312-398 147-214 (219)
108 cd00464 SK Shikimate kinase (S 98.3 1.4E-06 3.6E-11 62.0 5.3 58 55-115 1-58 (154)
109 TIGR02902 spore_lonB ATP-depen 98.3 1.8E-06 4.7E-11 61.3 5.8 203 19-375 66-296 (532)
110 PRK13946 shikimate kinase; Pro 98.3 1E-06 2.6E-11 62.9 4.5 40 47-86 14-53 (195)
111 KOG0735 consensus 98.3 3.3E-06 8.4E-11 59.6 6.9 76 50-130 428-507 (952)
112 PRK05342 clpX ATP-dependent pr 98.3 1.8E-07 4.6E-12 67.8 0.4 66 242-307 173-251 (411)
113 PRK05564 DNA polymerase III su 98.2 2.2E-06 5.5E-11 60.8 5.7 46 19-77 5-50 (313)
114 PRK08116 hypothetical protein; 98.2 2.3E-06 5.8E-11 60.7 5.8 73 6-87 67-145 (262)
115 PRK07471 DNA polymerase III su 98.2 2.7E-06 6.8E-11 60.3 5.8 47 18-77 17-63 (363)
116 KOG1942 consensus 98.2 1.7E-06 4.3E-11 61.5 4.7 64 17-89 37-102 (456)
117 PRK03731 aroL shikimate kinase 98.2 1.9E-06 4.8E-11 61.3 4.6 35 52-86 1-35 (172)
118 PRK13947 shikimate kinase; Pro 98.2 1.6E-06 4.2E-11 61.6 4.3 33 54-86 2-34 (171)
119 PRK08181 transposase; Validate 98.2 1.5E-06 3.8E-11 61.9 3.7 41 52-92 105-148 (269)
120 pfam00158 Sigma54_activat Sigm 98.2 2.5E-06 6.4E-11 60.4 4.8 61 20-92 1-64 (168)
121 PRK13948 shikimate kinase; Pro 98.2 3E-06 7.6E-11 59.9 4.9 37 50-86 7-43 (182)
122 PRK06526 transposase; Provisio 98.2 1.9E-06 4.9E-11 61.2 3.8 40 52-91 97-139 (254)
123 pfam10431 ClpB_D2-small C-term 98.2 1.5E-05 3.9E-10 55.4 8.4 79 329-416 1-83 (89)
124 PRK07940 DNA polymerase III su 98.1 3.5E-06 8.8E-11 59.5 4.9 59 19-79 6-65 (395)
125 PRK09112 DNA polymerase III su 98.1 4.8E-06 1.2E-10 58.6 5.6 47 18-77 23-69 (352)
126 PRK13949 shikimate kinase; Pro 98.1 3E-06 7.5E-11 60.0 4.4 33 54-86 2-34 (169)
127 PRK09183 transposase/IS protei 98.1 1.9E-06 4.9E-11 61.2 3.4 26 52-77 100-125 (258)
128 TIGR02928 TIGR02928 orc1/cdc6 98.1 4E-06 1E-10 59.1 4.8 75 19-110 18-103 (383)
129 PRK11331 5-methylcytosine-spec 98.1 2.6E-06 6.5E-11 60.4 3.6 27 51-77 192-218 (459)
130 PRK10865 protein disaggregatio 98.1 0.00019 4.7E-09 48.3 12.7 98 52-159 198-307 (857)
131 PRK07952 DNA replication prote 98.1 1.2E-05 2.9E-10 56.1 6.2 64 5-77 57-120 (242)
132 PRK12422 chromosomal replicati 98.0 0.00012 3.1E-09 49.5 11.3 71 15-93 109-184 (455)
133 CHL00095 clpC Clp protease ATP 98.0 0.00028 7.1E-09 47.2 12.9 98 52-159 199-307 (823)
134 PRK11608 pspF phage shock prot 98.0 7.8E-06 2E-10 57.2 4.9 62 19-92 7-71 (325)
135 TIGR02640 gas_vesic_GvpN gas v 98.0 1.5E-05 3.7E-10 55.5 6.1 79 23-114 4-83 (265)
136 KOG0989 consensus 98.0 1.2E-05 3.1E-10 55.9 5.7 58 8-80 25-84 (346)
137 PRK04132 replication factor C 98.0 1.5E-05 3.8E-10 55.4 6.0 48 15-77 23-70 (863)
138 PRK00625 shikimate kinase; Pro 98.0 6.2E-06 1.6E-10 57.9 4.0 33 54-86 1-33 (173)
139 pfam01695 IstB IstB-like ATP b 98.0 6.4E-06 1.6E-10 57.8 3.9 38 52-89 46-86 (178)
140 COG0703 AroK Shikimate kinase 98.0 1.3E-05 3.2E-10 55.9 5.4 34 53-86 2-35 (172)
141 PRK05022 anaerobic nitric oxid 98.0 1.3E-05 3.4E-10 55.8 5.3 62 19-92 187-251 (510)
142 KOG0743 consensus 98.0 1.3E-05 3.3E-10 55.8 5.3 50 52-109 234-283 (457)
143 TIGR02173 cyt_kin_arch cytidyl 98.0 6.9E-06 1.8E-10 57.6 3.6 63 56-134 3-65 (173)
144 smart00382 AAA ATPases associa 98.0 6.8E-06 1.7E-10 57.6 3.5 40 53-92 2-44 (148)
145 KOG0744 consensus 97.9 1.3E-05 3.3E-10 55.8 4.7 44 56-107 180-223 (423)
146 PRK07261 topology modulation p 97.9 2.5E-05 6.5E-10 53.9 6.1 44 56-100 3-46 (171)
147 PRK11361 acetoacetate metaboli 97.9 2.2E-05 5.7E-10 54.3 5.8 41 52-92 165-208 (457)
148 PRK08939 primosomal protein Dn 97.9 2.2E-05 5.5E-10 54.3 5.7 76 8-90 118-197 (306)
149 PRK06835 DNA replication prote 97.9 8E-06 2E-10 57.2 3.5 38 53-90 183-223 (330)
150 pfam01434 Peptidase_M41 Peptid 97.9 2.1E-05 5.4E-10 54.4 5.3 101 277-378 2-104 (192)
151 PRK08118 topology modulation p 97.9 3.1E-05 7.9E-10 53.3 6.2 40 56-96 4-43 (167)
152 PRK10365 transcriptional regul 97.9 2.1E-05 5.3E-10 54.5 5.2 41 52-92 161-204 (441)
153 PRK13531 regulatory ATPase Rav 97.9 1.4E-05 3.6E-10 55.5 4.1 66 11-92 13-79 (498)
154 COG0593 DnaA ATPase involved i 97.9 0.00067 1.7E-08 44.7 12.6 67 15-93 85-158 (408)
155 PRK07399 DNA polymerase III su 97.9 3E-05 7.7E-10 53.4 5.7 47 18-77 4-50 (314)
156 PRK08058 DNA polymerase III su 97.9 2.6E-05 6.6E-10 53.8 5.3 47 20-79 7-54 (329)
157 PRK06872 DNA polymerase III su 97.9 3E-05 7.5E-10 53.5 5.4 48 19-79 17-64 (696)
158 PRK10923 glnG nitrogen regulat 97.8 3E-05 7.7E-10 53.4 5.2 41 52-92 160-203 (469)
159 PRK12377 putative replication 97.8 1.5E-05 3.9E-10 55.3 3.5 26 52-77 100-125 (248)
160 cd02021 GntK Gluconate kinase 97.8 2.2E-05 5.5E-10 54.3 3.9 31 56-86 2-32 (150)
161 TIGR03346 chaperone_ClpB ATP-d 97.8 5.3E-05 1.3E-09 51.9 5.8 97 52-159 193-302 (852)
162 COG1484 DnaC DNA replication p 97.8 2.8E-05 7.3E-10 53.6 4.2 37 52-88 104-143 (254)
163 PRK09825 idnK D-gluconate kina 97.8 2.8E-05 7E-10 53.7 4.1 33 53-85 3-35 (176)
164 PRK09111 DNA polymerase III su 97.7 6.6E-05 1.7E-09 51.2 5.5 118 19-165 24-165 (600)
165 COG1221 PspF Transcriptional r 97.7 3.5E-05 8.8E-10 53.0 4.0 40 54-93 102-145 (403)
166 PRK00091 miaA tRNA delta(2)-is 97.7 3.7E-05 9.4E-10 52.9 4.1 46 53-102 4-49 (304)
167 PRK11545 gntK gluconate kinase 97.7 3.7E-05 9.5E-10 52.8 4.0 33 53-85 8-40 (177)
168 KOG0736 consensus 97.7 2.9E-05 7.4E-10 53.5 3.3 37 55-91 433-469 (953)
169 TIGR01187 potA polyamine ABC t 97.7 1.9E-05 4.9E-10 54.7 2.3 45 58-102 1-47 (331)
170 COG0464 SpoVK ATPases of the A 97.7 5.4E-05 1.4E-09 51.8 4.3 77 51-133 16-92 (494)
171 PRK11034 clpA ATP-dependent Cl 97.7 6.9E-05 1.7E-09 51.1 4.8 99 52-159 206-315 (758)
172 PRK10820 DNA-binding transcrip 97.7 0.00013 3.4E-09 49.2 6.2 62 19-92 205-269 (513)
173 TIGR03420 DnaA_homol_Hda DnaA 97.7 0.0001 2.6E-09 50.0 5.5 84 312-423 140-225 (226)
174 PRK13951 bifunctional shikimat 97.6 5.5E-05 1.4E-09 51.7 3.9 32 55-86 2-33 (488)
175 CHL00026 ycf2 Ycf2 97.6 7.6E-05 1.9E-09 50.8 4.5 40 52-91 1629-1668(2286)
176 PRK11388 DNA-binding transcrip 97.6 0.00011 2.7E-09 49.9 5.3 40 53-92 348-390 (639)
177 PRK00149 dnaA chromosomal repl 97.6 0.001 2.5E-08 43.6 10.2 66 16-93 118-190 (447)
178 TIGR03499 FlhF flagellar biosy 97.6 0.00037 9.4E-09 46.4 7.9 12 56-67 197-208 (282)
179 PRK08903 hypothetical protein; 97.6 0.00015 3.9E-09 48.9 5.9 85 312-424 138-224 (227)
180 PRK09087 hypothetical protein; 97.6 0.00013 3.4E-09 49.2 5.4 55 14-82 18-73 (226)
181 COG0324 MiaA tRNA delta(2)-iso 97.6 7.9E-05 2E-09 50.7 4.2 46 53-102 3-48 (308)
182 PTZ00088 adenylate kinase 1; P 97.6 6.7E-05 1.7E-09 51.2 3.6 30 55-84 2-31 (225)
183 PRK00279 adk adenylate kinase; 97.6 7E-05 1.8E-09 51.1 3.6 29 55-83 2-30 (215)
184 KOG2680 consensus 97.5 7E-05 1.8E-09 51.1 3.2 67 15-90 37-105 (454)
185 COG3604 FhlA Transcriptional r 97.5 0.00017 4.4E-09 48.5 5.1 62 19-92 224-288 (550)
186 PRK05642 DNA replication initi 97.5 0.00018 4.6E-09 48.4 5.2 85 312-424 147-233 (234)
187 KOG0741 consensus 97.5 0.00037 9.5E-09 46.3 6.8 31 54-84 539-569 (744)
188 cd01428 ADK Adenylate kinase ( 97.5 9.5E-05 2.4E-09 50.2 3.7 28 56-83 2-29 (194)
189 COG0563 Adk Adenylate kinase a 97.5 0.00012 3E-09 49.6 4.1 30 54-83 1-30 (178)
190 TIGR03345 VI_ClpV1 type VI sec 97.5 9.8E-05 2.5E-09 50.1 3.5 33 52-84 207-242 (852)
191 PRK06921 hypothetical protein; 97.5 0.00011 2.9E-09 49.7 3.5 26 52-77 115-140 (265)
192 PRK05703 flhF flagellar biosyn 97.4 0.0015 3.7E-08 42.5 9.0 33 54-86 211-250 (412)
193 TIGR02982 heterocyst_DevA ABC 97.4 5.8E-05 1.5E-09 51.6 1.7 46 30-75 2-53 (220)
194 COG1219 ClpX ATP-dependent pro 97.4 3.1E-05 7.8E-10 53.4 0.2 69 240-308 159-240 (408)
195 CHL00178 consensus 97.4 0.0003 7.6E-09 47.0 5.3 40 52-91 1457-1496(2133)
196 COG2812 DnaX DNA polymerase II 97.4 0.00011 2.9E-09 49.7 3.0 48 20-80 18-65 (515)
197 PRK02496 adk adenylate kinase; 97.4 0.00014 3.6E-09 49.1 3.5 29 54-82 2-30 (185)
198 COG2204 AtoC Response regulato 97.4 0.00033 8.5E-09 46.6 5.2 41 52-92 163-206 (464)
199 KOG0745 consensus 97.4 3.5E-05 8.9E-10 53.0 0.2 71 241-311 289-372 (564)
200 PRK11174 cysteine/glutathione 97.4 0.002 5E-08 41.7 9.0 58 312-375 399-463 (588)
201 COG3842 PotA ABC-type spermidi 97.4 5.5E-05 1.4E-09 51.7 1.0 42 50-91 27-71 (352)
202 PRK13900 type IV secretion sys 97.4 0.0004 1E-08 46.1 5.4 26 52-77 159-184 (332)
203 COG0470 HolB ATPase involved i 97.4 0.00059 1.5E-08 45.0 6.2 48 19-78 2-49 (325)
204 PRK06217 hypothetical protein; 97.4 0.00025 6.4E-09 47.4 4.2 33 54-86 2-34 (185)
205 CHL00179 consensus 97.3 0.0002 5.2E-09 48.0 3.7 46 52-97 1599-1646(2262)
206 TIGR01313 therm_gnt_kin carboh 97.3 0.00014 3.5E-09 49.2 2.7 27 56-82 1-32 (175)
207 PRK06995 flhF flagellar biosyn 97.3 0.0012 2.9E-08 43.2 7.3 19 51-69 173-192 (404)
208 COG2074 2-phosphoglycerate kin 97.3 0.00096 2.5E-08 43.7 6.8 61 11-84 60-120 (299)
209 TIGR03263 guanyl_kin guanylate 97.3 0.00034 8.8E-09 46.6 4.5 35 56-90 4-38 (180)
210 pfam01745 IPT Isopentenyl tran 97.3 0.0003 7.6E-09 47.0 4.2 32 56-87 4-35 (232)
211 pfam00493 MCM MCM2/3/5 family. 97.3 0.00047 1.2E-08 45.7 5.1 77 13-93 19-96 (327)
212 PRK12724 flagellar biosynthesi 97.3 0.001 2.6E-08 43.6 6.7 21 54-77 224-244 (432)
213 KOG3347 consensus 97.3 0.00032 8.2E-09 46.8 3.9 34 51-84 5-38 (176)
214 COG1102 Cmk Cytidylate kinase 97.3 0.00028 7.1E-09 47.2 3.6 36 56-92 3-38 (179)
215 PRK08154 anaerobic benzoate ca 97.2 0.00085 2.2E-08 44.0 5.9 35 52-86 132-166 (304)
216 PRK08727 hypothetical protein; 97.2 0.00059 1.5E-08 45.0 5.1 85 313-425 144-230 (233)
217 TIGR00602 rad24 checkpoint pro 97.2 0.00024 6E-09 47.6 2.9 25 56-80 121-145 (670)
218 PRK11176 lipid transporter ATP 97.2 0.0032 8.3E-08 40.3 8.6 47 324-375 404-457 (581)
219 KOG2170 consensus 97.2 0.00082 2.1E-08 44.1 5.3 61 10-77 74-134 (344)
220 COG1239 ChlI Mg-chelatase subu 97.2 0.00074 1.9E-08 44.4 4.9 63 5-81 4-66 (423)
221 cd01130 VirB11-like_ATPase Typ 97.2 0.0004 1E-08 46.1 3.6 27 52-78 24-50 (186)
222 PRK06893 DNA replication initi 97.2 0.0013 3.2E-08 42.9 6.1 84 313-424 143-228 (229)
223 TIGR02782 TrbB_P P-type conjug 97.2 0.00037 9.5E-09 46.3 3.4 26 52-77 138-164 (315)
224 TIGR02868 CydC ABC transporter 97.1 0.00034 8.6E-09 46.6 3.1 32 55-86 389-422 (566)
225 pfam06414 Zeta_toxin Zeta toxi 97.1 0.0033 8.3E-08 40.2 8.1 43 50-92 9-52 (191)
226 PRK00300 gmk guanylate kinase; 97.1 0.00089 2.3E-08 43.9 5.0 40 52-91 4-46 (208)
227 pfam00437 GSPII_E Type II/IV s 97.1 0.0005 1.3E-08 45.5 3.7 28 52-79 138-165 (283)
228 PRK08084 DNA replication initi 97.1 0.0011 2.8E-08 43.3 5.4 84 312-423 148-233 (235)
229 TIGR00972 3a0107s01c2 phosphat 97.1 0.00055 1.4E-08 45.3 3.8 49 56-108 30-79 (248)
230 PRK13808 adenylate kinase; Pro 97.1 0.0015 3.8E-08 42.5 5.9 30 55-84 2-31 (297)
231 PRK13851 type IV secretion sys 97.1 0.00046 1.2E-08 45.8 3.3 26 52-77 161-186 (343)
232 PRK06731 flhF flagellar biosyn 97.1 0.0029 7.4E-08 40.6 7.4 27 49-75 71-97 (270)
233 PRK03839 putative kinase; Prov 97.1 0.00063 1.6E-08 44.9 3.9 30 55-84 2-31 (180)
234 TIGR00764 lon_rel ATP-dependen 97.1 0.00092 2.3E-08 43.8 4.6 84 292-380 281-367 (662)
235 PRK06620 hypothetical protein; 97.1 0.00067 1.7E-08 44.7 3.9 60 15-82 14-73 (214)
236 COG0542 clpA ATP-binding subun 97.1 0.0012 3.1E-08 43.0 5.2 99 52-160 190-300 (786)
237 PHA02244 ATPase-like protein 97.1 0.00076 1.9E-08 44.3 4.1 52 56-107 122-175 (383)
238 TIGR01351 adk adenylate kinase 97.0 0.0006 1.5E-08 45.0 3.4 30 55-84 1-30 (232)
239 COG1419 FlhF Flagellar GTP-bin 97.0 0.00076 1.9E-08 44.3 3.9 34 53-86 203-243 (407)
240 COG3854 SpoIIIAA ncharacterize 97.0 0.00051 1.3E-08 45.5 3.0 27 52-78 136-162 (308)
241 cd03115 SRP The signal recogni 97.0 0.0017 4.5E-08 42.0 5.7 22 56-77 3-24 (173)
242 PRK13894 conjugal transfer ATP 97.0 0.0017 4.2E-08 42.1 5.6 26 52-77 148-173 (320)
243 PRK10790 putative multidrug tr 97.0 0.0079 2E-07 37.7 9.0 47 324-375 403-454 (593)
244 KOG0991 consensus 97.0 0.0013 3.4E-08 42.8 5.0 45 19-77 28-72 (333)
245 COG3839 MalK ABC-type sugar tr 97.0 0.00049 1.3E-08 45.6 2.7 36 56-91 32-69 (338)
246 pfam00448 SRP54 SRP54-type pro 97.0 0.0019 4.8E-08 41.8 5.5 23 53-75 1-23 (196)
247 cd00071 GMPK Guanosine monopho 96.9 0.0012 3.1E-08 43.0 4.3 34 56-89 2-36 (137)
248 pfam00625 Guanylate_kin Guanyl 96.9 0.0015 3.8E-08 42.5 4.4 35 56-90 4-39 (182)
249 KOG2543 consensus 96.9 0.0014 3.5E-08 42.6 4.1 44 47-90 24-68 (438)
250 COG4178 ABC-type uncharacteriz 96.9 0.00088 2.2E-08 43.9 3.1 22 56-77 422-443 (604)
251 pfam03215 Rad17 Rad17 cell cyc 96.9 0.0011 2.7E-08 43.4 3.5 27 55-81 47-73 (490)
252 PRK13833 conjugal transfer pro 96.9 0.001 2.6E-08 43.5 3.4 26 52-77 143-168 (323)
253 TIGR02538 type_IV_pilB type IV 96.8 0.00048 1.2E-08 45.6 1.5 50 207-258 419-468 (577)
254 TIGR00174 miaA tRNA delta(2)-i 96.8 0.0012 3E-08 43.1 3.4 55 56-114 2-66 (307)
255 PRK10789 putative multidrug tr 96.8 0.011 2.8E-07 36.8 8.4 46 324-374 377-428 (569)
256 PRK08099 nicotinamide-nucleoti 96.8 0.0011 2.8E-08 43.3 3.2 60 54-113 232-291 (411)
257 pfam00406 ADK Adenylate kinase 96.8 0.00081 2.1E-08 44.1 2.5 26 58-83 1-26 (186)
258 PRK00889 adenylylsulfate kinas 96.8 0.0027 6.8E-08 40.8 5.1 36 56-91 7-45 (175)
259 cd03260 ABC_PstB_phosphate_tra 96.8 0.0015 3.8E-08 42.4 3.8 25 56-80 29-53 (227)
260 TIGR01420 pilT_fam twitching m 96.8 0.001 2.6E-08 43.5 2.9 23 52-77 125-148 (350)
261 COG4088 Predicted nucleotide k 96.8 0.0011 2.7E-08 43.4 2.9 23 56-78 4-26 (261)
262 PRK12723 flagellar biosynthesi 96.8 0.0092 2.4E-07 37.3 7.7 23 52-74 173-195 (388)
263 PRK11022 dppD dipeptide transp 96.8 0.0061 1.6E-07 38.4 6.8 32 50-81 29-61 (327)
264 PRK11432 fbpC ferric transport 96.7 0.00093 2.4E-08 43.7 2.4 41 51-91 29-72 (351)
265 PRK10536 hypothetical protein; 96.7 0.0047 1.2E-07 39.2 6.0 24 54-77 75-98 (262)
266 pfam01583 APS_kinase Adenylyls 96.7 0.0033 8.5E-08 40.2 5.2 37 56-92 5-44 (157)
267 smart00350 MCM minichromosome 96.7 0.00065 1.7E-08 44.8 1.6 112 14-132 199-314 (509)
268 pfam00910 RNA_helicase RNA hel 96.7 0.0013 3.3E-08 42.9 3.0 43 56-99 1-52 (105)
269 cd02020 CMPK Cytidine monophos 96.7 0.0014 3.5E-08 42.7 3.1 29 56-84 2-30 (147)
270 PRK04182 cytidylate kinase; Pr 96.7 0.002 5E-08 41.7 3.9 28 56-83 3-30 (178)
271 PRK05541 adenylylsulfate kinas 96.7 0.0021 5.4E-08 41.4 4.0 36 56-91 10-48 (176)
272 TIGR02533 type_II_gspE general 96.7 0.00084 2.1E-08 44.1 1.8 93 215-326 346-442 (495)
273 TIGR03258 PhnT 2-aminoethylpho 96.7 0.0012 3E-08 43.1 2.5 48 51-98 28-87 (362)
274 KOG3354 consensus 96.6 0.0016 4.2E-08 42.2 3.1 32 53-84 12-43 (191)
275 TIGR02528 EutP ethanolamine ut 96.6 0.00069 1.8E-08 44.6 1.1 23 55-77 2-24 (144)
276 PRK10418 nikD nickel transport 96.6 0.0013 3.3E-08 42.9 2.4 33 55-87 31-63 (254)
277 PRK13657 cyclic beta-1,2-gluca 96.6 0.015 3.9E-07 35.9 7.9 59 312-375 384-449 (585)
278 TIGR03167 tRNA_sel_U_synt tRNA 96.6 0.002 5E-08 41.7 3.3 23 54-76 128-150 (311)
279 TIGR03265 PhnT2 putative 2-ami 96.6 0.0013 3.4E-08 42.8 2.4 36 56-91 33-70 (353)
280 smart00072 GuKc Guanylate kina 96.6 0.0032 8.1E-08 40.3 4.3 37 54-90 3-40 (184)
281 PRK13649 cbiO cobalt transport 96.6 0.0061 1.6E-07 38.5 5.6 22 56-77 36-57 (280)
282 TIGR00968 3a0106s01 sulfate AB 96.5 0.0012 3.1E-08 43.0 1.9 26 52-77 23-50 (241)
283 PRK07667 uridine kinase; Provi 96.5 0.0029 7.5E-08 40.5 3.8 38 52-89 10-53 (190)
284 PRK03846 adenylylsulfate kinas 96.5 0.0066 1.7E-07 38.3 5.6 40 53-92 24-66 (198)
285 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0062 1.6E-07 38.4 5.5 66 13-86 46-118 (361)
286 COG1122 CbiO ABC-type cobalt t 96.5 0.0025 6.5E-08 40.9 3.5 41 50-90 26-69 (235)
287 KOG1969 consensus 96.5 0.0035 8.9E-08 40.0 4.1 41 52-92 325-365 (877)
288 cd03294 ABC_Pro_Gly_Bertaine T 96.5 0.0017 4.3E-08 42.1 2.4 28 51-78 47-75 (269)
289 TIGR01817 nifA Nif-specific re 96.5 0.0035 9E-08 40.0 4.1 90 9-122 203-295 (574)
290 PRK09473 oppD oligopeptide tra 96.5 0.02 5.1E-07 35.1 7.8 41 56-101 45-85 (330)
291 PRK00023 cmk cytidylate kinase 96.5 0.0024 6.2E-08 41.1 3.1 29 56-84 7-35 (225)
292 PRK13764 ATPase; Provisional 96.5 0.0024 6.2E-08 41.1 3.1 26 52-77 258-283 (605)
293 TIGR01193 bacteriocin_ABC ABC- 96.5 0.01 2.6E-07 37.0 6.3 109 52-167 497-636 (710)
294 cd03246 ABCC_Protease_Secretio 96.4 0.0036 9.1E-08 40.0 3.8 28 51-78 25-53 (173)
295 COG1124 DppF ABC-type dipeptid 96.4 0.0026 6.6E-08 40.9 3.0 43 50-92 29-74 (252)
296 TIGR02442 Cob-chelat-sub cobal 96.4 0.0033 8.5E-08 40.2 3.6 44 20-77 6-49 (688)
297 cd03223 ABCD_peroxisomal_ALDP 96.4 0.0023 6E-08 41.2 2.8 29 50-78 23-52 (166)
298 PRK06696 uridine kinase; Valid 96.4 0.014 3.5E-07 36.2 6.7 34 56-89 29-65 (227)
299 TIGR02915 PEP_resp_reg putativ 96.4 0.0046 1.2E-07 39.3 4.2 69 22-90 85-205 (451)
300 PRK13651 cobalt transporter AT 96.4 0.0074 1.9E-07 37.9 5.2 22 56-77 36-57 (304)
301 cd02027 APSK Adenosine 5'-phos 96.4 0.0066 1.7E-07 38.2 5.0 36 56-91 2-40 (149)
302 PRK08769 DNA polymerase III su 96.4 0.0083 2.1E-07 37.6 5.5 27 51-77 24-50 (319)
303 cd03296 ABC_CysA_sulfate_impor 96.4 0.0022 5.6E-08 41.3 2.5 23 56-78 31-53 (239)
304 PRK12727 flagellar biosynthesi 96.4 0.014 3.5E-07 36.2 6.5 18 51-68 345-363 (557)
305 cd03301 ABC_MalK_N The N-termi 96.4 0.0023 5.8E-08 41.2 2.5 30 50-79 22-52 (213)
306 TIGR03415 ABC_choXWV_ATP choli 96.4 0.0023 6E-08 41.2 2.5 23 56-78 53-75 (382)
307 COG3829 RocR Transcriptional r 96.4 0.0047 1.2E-07 39.2 4.0 41 52-92 267-310 (560)
308 COG1936 Predicted nucleotide k 96.4 0.0041 1E-07 39.6 3.7 30 54-84 1-30 (180)
309 cd03257 ABC_NikE_OppD_transpor 96.3 0.0025 6.3E-08 41.0 2.5 29 50-78 27-56 (228)
310 TIGR02322 phosphon_PhnN phosph 96.3 0.0035 9E-08 40.0 3.3 25 56-80 4-29 (183)
311 pfam03969 AFG1_ATPase AFG1-lik 96.3 0.03 7.6E-07 34.0 8.0 71 8-78 2-86 (361)
312 cd03213 ABCG_EPDR ABCG transpo 96.3 0.004 1E-07 39.7 3.5 23 56-78 38-60 (194)
313 TIGR00455 apsK adenylylsulfate 96.3 0.0039 1E-07 39.7 3.5 22 56-77 22-43 (187)
314 PRK11889 flhF flagellar biosyn 96.3 0.017 4.3E-07 35.6 6.7 13 55-67 243-255 (436)
315 KOG0060 consensus 96.3 0.003 7.8E-08 40.4 2.9 24 53-76 461-484 (659)
316 PRK11248 tauB taurine transpor 96.3 0.0025 6.4E-08 41.0 2.4 29 50-78 23-52 (255)
317 cd03299 ABC_ModC_like Archeal 96.3 0.0027 6.8E-08 40.8 2.5 29 50-78 21-50 (235)
318 PRK11650 ugpC glycerol-3-phosp 96.3 0.0027 6.9E-08 40.8 2.6 29 50-78 26-55 (358)
319 PRK09452 potA putrescine/sperm 96.3 0.0027 6.8E-08 40.8 2.5 28 51-78 40-68 (378)
320 PRK04220 2-phosphoglycerate ki 96.3 0.022 5.7E-07 34.8 7.2 69 10-84 41-123 (306)
321 pfam01057 Parvo_NS1 Parvovirus 96.3 0.0041 1E-07 39.6 3.5 70 13-84 34-142 (271)
322 PRK11000 maltose/maltodextrin 96.3 0.0027 6.9E-08 40.8 2.5 49 50-98 25-83 (369)
323 PRK10636 putative ABC transpor 96.3 0.0043 1.1E-07 39.4 3.5 50 51-100 24-74 (638)
324 cd03295 ABC_OpuCA_Osmoprotecti 96.3 0.0028 7.1E-08 40.7 2.5 23 56-78 30-52 (242)
325 COG1116 TauB ABC-type nitrate/ 96.3 0.0029 7.3E-08 40.6 2.6 23 56-78 32-54 (248)
326 cd03229 ABC_Class3 This class 96.3 0.0028 7.3E-08 40.6 2.5 23 56-78 29-51 (178)
327 PRK10078 ribose 1,5-bisphospho 96.3 0.005 1.3E-07 39.1 3.8 22 56-77 5-26 (184)
328 PRK11144 modC molybdate transp 96.3 0.0023 5.9E-08 41.2 2.1 51 50-100 20-86 (352)
329 PRK10851 sulfate/thiosulfate t 96.3 0.0028 7.2E-08 40.6 2.5 29 51-79 25-54 (352)
330 PRK11784 tRNA 2-selenouridine 96.3 0.0044 1.1E-07 39.4 3.4 25 51-75 135-159 (333)
331 PRK10070 glycine betaine trans 96.2 0.003 7.7E-08 40.5 2.5 23 56-78 57-79 (400)
332 pfam00485 PRK Phosphoribulokin 96.2 0.0044 1.1E-07 39.4 3.3 25 56-80 2-26 (196)
333 PRK13644 cbiO cobalt transport 96.2 0.0063 1.6E-07 38.4 4.1 24 55-78 30-53 (274)
334 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.2 0.003 7.7E-08 40.5 2.4 25 55-79 32-56 (218)
335 PRK10247 putative ABC transpor 96.2 0.0036 9.3E-08 39.9 2.8 28 51-78 30-58 (225)
336 cd03234 ABCG_White The White s 96.2 0.0018 4.5E-08 42.0 1.2 43 36-78 15-58 (226)
337 cd03300 ABC_PotA_N PotA is an 96.2 0.0034 8.7E-08 40.1 2.7 30 50-79 22-52 (232)
338 cd03297 ABC_ModC_molybdenum_tr 96.2 0.0036 9.2E-08 39.9 2.8 25 55-79 25-49 (214)
339 PRK06871 DNA polymerase III su 96.2 0.0084 2.1E-07 37.6 4.6 27 51-77 21-47 (324)
340 cd03231 ABC_CcmA_heme_exporter 96.2 0.0036 9.2E-08 39.9 2.6 23 56-78 29-51 (201)
341 PRK10744 phosphate transporter 96.2 0.0053 1.3E-07 38.9 3.4 24 56-79 39-62 (257)
342 TIGR03375 type_I_sec_LssB type 96.1 0.0054 1.4E-07 38.8 3.4 58 312-374 514-578 (694)
343 PRK11160 cysteine/glutathione 96.1 0.0044 1.1E-07 39.4 2.9 54 316-374 394-454 (575)
344 cd02023 UMPK Uridine monophosp 96.1 0.0067 1.7E-07 38.2 3.8 24 56-79 2-25 (198)
345 pfam07931 CPT Chloramphenicol 96.1 0.014 3.7E-07 36.0 5.5 37 56-92 4-40 (174)
346 cd03293 ABC_NrtD_SsuB_transpor 96.1 0.0036 9.1E-08 40.0 2.4 24 55-78 32-55 (220)
347 cd02028 UMPK_like Uridine mono 96.1 0.007 1.8E-07 38.1 3.8 23 56-78 2-24 (179)
348 PRK13635 cbiO cobalt transport 96.1 0.004 1E-07 39.6 2.5 28 51-78 30-58 (279)
349 PRK10419 nikE nickel transport 96.1 0.003 7.7E-08 40.4 1.9 28 50-77 34-62 (266)
350 cd01882 BMS1 Bms1. Bms1 is an 96.1 0.023 5.9E-07 34.7 6.4 39 39-77 23-63 (225)
351 pfam10412 TrwB_AAD_bind Type I 96.1 0.013 3.3E-07 36.3 5.2 47 48-94 10-60 (386)
352 COG0194 Gmk Guanylate kinase [ 96.1 0.0091 2.3E-07 37.4 4.3 35 56-91 7-41 (191)
353 cd03262 ABC_HisP_GlnQ_permease 96.1 0.0042 1.1E-07 39.5 2.6 23 55-77 28-50 (213)
354 cd03233 ABC_PDR_domain1 The pl 96.1 0.0041 1E-07 39.6 2.5 45 50-99 29-74 (202)
355 cd03261 ABC_Org_Solvent_Resist 96.1 0.0042 1.1E-07 39.5 2.5 23 56-78 29-51 (235)
356 PRK05917 DNA polymerase III su 96.0 0.0066 1.7E-07 38.3 3.5 28 50-77 16-43 (290)
357 PRK13650 cbiO cobalt transport 96.0 0.0045 1.1E-07 39.3 2.6 23 56-78 33-55 (276)
358 PRK13768 GTPase; Provisional 96.0 0.0065 1.7E-07 38.3 3.4 25 53-77 2-26 (253)
359 PRK13640 cbiO cobalt transport 96.0 0.0045 1.1E-07 39.3 2.6 22 56-77 37-58 (283)
360 pfam00519 PPV_E1_C Papillomavi 96.0 0.013 3.4E-07 36.3 4.9 30 51-80 259-289 (432)
361 pfam05621 TniB Bacterial TniB 96.0 0.025 6.3E-07 34.5 6.3 50 19-78 35-86 (302)
362 cd01124 KaiC KaiC is a circadi 96.0 0.0051 1.3E-07 39.0 2.7 30 56-85 2-34 (187)
363 PRK13648 cbiO cobalt transport 96.0 0.0054 1.4E-07 38.8 2.8 39 51-89 32-73 (269)
364 PRK09493 glnQ glutamine ABC tr 96.0 0.0056 1.4E-07 38.7 2.8 29 50-78 23-52 (240)
365 TIGR02142 modC_ABC molybdate A 96.0 0.0075 1.9E-07 37.9 3.5 38 54-91 23-63 (361)
366 PRK08699 DNA polymerase III su 96.0 0.0084 2.2E-07 37.6 3.7 28 50-77 18-45 (325)
367 KOG1970 consensus 95.9 0.006 1.5E-07 38.5 2.9 48 52-99 108-157 (634)
368 pfam03266 DUF265 Protein of un 95.9 0.0072 1.8E-07 38.0 3.3 25 55-79 1-25 (168)
369 COG4650 RtcR Sigma54-dependent 95.9 0.012 3.2E-07 36.4 4.5 39 53-91 208-252 (531)
370 PRK11701 phnK phosphonates tra 95.9 0.0043 1.1E-07 39.4 2.1 29 50-78 28-57 (258)
371 COG4525 TauB ABC-type taurine 95.9 0.0055 1.4E-07 38.8 2.6 22 56-77 34-55 (259)
372 cd03237 ABC_RNaseL_inhibitor_d 95.9 0.0055 1.4E-07 38.8 2.6 23 56-78 28-50 (246)
373 COG3265 GntK Gluconate kinase 95.9 0.0059 1.5E-07 38.5 2.7 75 342-427 74-158 (161)
374 PRK09302 circadian clock prote 95.9 0.0078 2E-07 37.8 3.4 32 54-85 25-60 (501)
375 COG2804 PulE Type II secretory 95.9 0.0092 2.3E-07 37.3 3.6 35 52-86 256-292 (500)
376 pfam05729 NACHT NACHT domain. 95.9 0.0068 1.7E-07 38.1 3.0 37 56-92 3-47 (165)
377 cd03226 ABC_cobalt_CbiO_domain 95.9 0.0058 1.5E-07 38.6 2.6 29 50-78 22-51 (205)
378 PRK13543 cytochrome c biogenes 95.9 0.0058 1.5E-07 38.6 2.6 28 50-77 33-61 (214)
379 PRK13637 cbiO cobalt transport 95.9 0.0052 1.3E-07 38.9 2.3 23 56-78 36-58 (287)
380 PRK13632 cbiO cobalt transport 95.9 0.0057 1.5E-07 38.7 2.5 23 56-78 39-61 (273)
381 COG1118 CysA ABC-type sulfate/ 95.9 0.0045 1.2E-07 39.3 2.0 27 52-78 25-53 (345)
382 cd00227 CPT Chloramphenicol (C 95.9 0.0086 2.2E-07 37.5 3.4 38 56-93 5-42 (175)
383 PRK05707 DNA polymerase III su 95.9 0.011 2.9E-07 36.7 4.0 38 36-78 10-47 (328)
384 PRK06547 hypothetical protein; 95.9 0.012 3.1E-07 36.5 4.2 31 56-86 18-49 (184)
385 pfam01202 SKI Shikimate kinase 95.9 0.0072 1.8E-07 38.0 3.0 25 62-86 1-25 (158)
386 COG1201 Lhr Lhr-like helicases 95.9 0.019 4.7E-07 35.3 5.1 19 52-70 36-54 (814)
387 TIGR03269 met_CoM_red_A2 methy 95.8 0.0063 1.6E-07 38.4 2.7 27 51-77 23-50 (520)
388 cd03225 ABC_cobalt_CbiO_domain 95.8 0.0067 1.7E-07 38.2 2.8 29 50-78 23-52 (211)
389 PRK09270 frcK putative fructos 95.8 0.0072 1.8E-07 38.0 2.9 25 56-80 37-61 (230)
390 PRK11607 potG putrescine trans 95.8 0.0044 1.1E-07 39.4 1.9 34 56-89 48-83 (377)
391 PRK13642 cbiO cobalt transport 95.8 0.0057 1.5E-07 38.7 2.4 23 56-78 36-58 (277)
392 PRK13540 cytochrome c biogenes 95.8 0.0061 1.5E-07 38.5 2.5 22 56-77 30-51 (200)
393 PRK11147 ABC transporter ATPas 95.8 0.0097 2.5E-07 37.2 3.6 28 51-78 26-54 (632)
394 PRK11247 ssuB aliphatic sulfon 95.8 0.0057 1.4E-07 38.7 2.4 27 51-77 35-62 (257)
395 PRK11264 putative amino-acid A 95.8 0.0063 1.6E-07 38.4 2.6 28 50-77 23-51 (248)
396 PRK13539 cytochrome c biogenes 95.8 0.006 1.5E-07 38.5 2.5 29 50-78 24-53 (206)
397 pfam04851 ResIII Type III rest 95.8 0.017 4.3E-07 35.6 4.8 24 54-77 19-42 (103)
398 PRK10771 thiQ thiamine transpo 95.8 0.0062 1.6E-07 38.4 2.5 25 55-79 27-51 (233)
399 PRK13633 cobalt transporter AT 95.8 0.0062 1.6E-07 38.4 2.5 28 50-77 33-61 (281)
400 cd01127 TrwB Bacterial conjuga 95.8 0.014 3.5E-07 36.2 4.3 51 49-99 38-93 (410)
401 COG1123 ATPase components of v 95.8 0.005 1.3E-07 39.0 2.0 39 48-86 29-68 (539)
402 TIGR03608 L_ocin_972_ABC putat 95.8 0.0063 1.6E-07 38.4 2.5 29 50-78 20-49 (206)
403 PRK10619 histidine/lysine/argi 95.8 0.0052 1.3E-07 38.9 2.1 24 55-78 33-56 (257)
404 PRK11629 lolD lipoprotein tran 95.8 0.0062 1.6E-07 38.4 2.5 27 51-77 32-59 (233)
405 cd03256 ABC_PhnC_transporter A 95.8 0.0062 1.6E-07 38.4 2.5 29 50-78 23-52 (241)
406 PRK11831 putative ABC transpor 95.8 0.0058 1.5E-07 38.6 2.3 28 51-78 31-59 (269)
407 cd01120 RecA-like_NTPases RecA 95.8 0.017 4.3E-07 35.6 4.6 32 55-86 1-35 (165)
408 TIGR02788 VirB11 P-type DNA tr 95.8 0.0073 1.9E-07 38.0 2.8 26 52-77 157-182 (328)
409 PRK06964 DNA polymerase III su 95.8 0.011 2.9E-07 36.7 3.7 38 37-78 9-46 (342)
410 PRK05480 uridine kinase; Provi 95.8 0.0099 2.5E-07 37.1 3.4 24 56-79 9-32 (209)
411 cd03298 ABC_ThiQ_thiamine_tran 95.8 0.0063 1.6E-07 38.4 2.4 23 56-78 27-49 (211)
412 PRK13646 cbiO cobalt transport 95.8 0.0073 1.9E-07 38.0 2.7 24 55-78 35-58 (286)
413 cd03236 ABC_RNaseL_inhibitor_d 95.8 0.0054 1.4E-07 38.8 2.0 28 51-78 22-51 (255)
414 cd03289 ABCC_CFTR2 The CFTR su 95.8 0.0092 2.4E-07 37.3 3.2 28 51-78 27-55 (275)
415 PRK13549 xylose transporter AT 95.7 0.0068 1.7E-07 38.2 2.5 27 51-77 28-55 (513)
416 cd03369 ABCC_NFT1 Domain 2 of 95.7 0.01 2.6E-07 37.0 3.4 29 51-79 31-60 (207)
417 cd03278 ABC_SMC_barmotin Barmo 95.7 0.0086 2.2E-07 37.5 3.0 26 52-77 20-46 (197)
418 cd03247 ABCC_cytochrome_bd The 95.7 0.0084 2.1E-07 37.6 2.9 28 51-78 25-53 (178)
419 cd03253 ABCC_ATM1_transporter 95.7 0.0068 1.7E-07 38.1 2.4 45 56-100 30-85 (236)
420 cd01131 PilT Pilus retraction 95.7 0.011 2.9E-07 36.7 3.5 25 56-80 4-28 (198)
421 PRK11308 dppF dipeptide transp 95.7 0.0048 1.2E-07 39.2 1.6 43 50-100 37-80 (327)
422 cd03250 ABCC_MRP_domain1 Domai 95.7 0.0061 1.6E-07 38.4 2.2 23 56-78 34-56 (204)
423 pfam02562 PhoH PhoH-like prote 95.7 0.0086 2.2E-07 37.5 2.9 24 54-77 20-43 (205)
424 PRK11147 ABC transporter ATPas 95.7 0.0094 2.4E-07 37.2 3.1 43 55-97 347-389 (632)
425 PRK10908 cell division protein 95.7 0.0067 1.7E-07 38.2 2.3 45 50-102 24-69 (222)
426 PRK13634 cbiO cobalt transport 95.7 0.0067 1.7E-07 38.2 2.3 28 51-78 17-45 (276)
427 COG1618 Predicted nucleotide k 95.7 0.011 2.8E-07 36.8 3.4 27 52-78 4-30 (179)
428 cd03290 ABCC_SUR1_N The SUR do 95.7 0.008 2E-07 37.7 2.7 25 55-79 29-53 (218)
429 PRK06090 DNA polymerase III su 95.7 0.02 5.1E-07 35.1 4.7 29 50-78 22-50 (319)
430 PRK04328 hypothetical protein; 95.7 0.0094 2.4E-07 37.2 3.0 31 54-84 25-58 (250)
431 PRK10522 multidrug transporter 95.7 0.0079 2E-07 37.7 2.5 25 325-354 386-410 (547)
432 cd03228 ABCC_MRP_Like The MRP 95.7 0.0081 2.1E-07 37.7 2.6 24 55-78 30-53 (171)
433 PRK13547 hmuV hemin importer A 95.6 0.0078 2E-07 37.8 2.4 29 50-78 23-52 (273)
434 PRK12337 2-phosphoglycerate ki 95.6 0.055 1.4E-06 32.3 6.7 44 35-84 250-293 (492)
435 CHL00131 ycf16 sulfate ABC tra 95.6 0.0079 2E-07 37.7 2.4 44 51-101 29-74 (252)
436 KOG1051 consensus 95.6 0.019 4.9E-07 35.2 4.4 62 4-81 173-239 (898)
437 pfam08298 AAA_PrkA PrkA AAA do 95.6 0.032 8.2E-07 33.8 5.5 64 20-91 60-124 (358)
438 PRK10584 putative ABC transpor 95.6 0.0079 2E-07 37.8 2.4 29 50-78 32-61 (228)
439 PRK13695 putative NTPase; Prov 95.6 0.013 3.3E-07 36.3 3.5 27 53-79 3-29 (174)
440 cd03244 ABCC_MRP_domain2 Domai 95.6 0.0093 2.4E-07 37.3 2.7 29 51-79 27-56 (221)
441 PTZ00301 uridine kinase; Provi 95.6 0.01 2.7E-07 36.9 2.9 23 56-78 6-28 (210)
442 PRK13538 cytochrome c biogenes 95.6 0.0092 2.3E-07 37.3 2.6 29 50-78 23-52 (204)
443 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.0098 2.5E-07 37.1 2.7 24 55-78 27-50 (157)
444 cd03291 ABCC_CFTR1 The CFTR su 95.6 0.0092 2.3E-07 37.3 2.6 26 55-80 65-90 (282)
445 cd03245 ABCC_bacteriocin_expor 95.6 0.0091 2.3E-07 37.3 2.5 28 51-78 27-55 (220)
446 KOG0478 consensus 95.5 0.031 8E-07 33.9 5.3 98 20-130 431-538 (804)
447 PRK10762 D-ribose transporter 95.5 0.0087 2.2E-07 37.5 2.4 28 50-77 26-54 (501)
448 PRK13544 consensus 95.5 0.0091 2.3E-07 37.4 2.5 28 51-78 24-52 (208)
449 cd03288 ABCC_SUR2 The SUR doma 95.5 0.011 2.9E-07 36.7 2.9 34 55-88 49-84 (257)
450 PRK09580 sufC cysteine desulfu 95.5 0.0087 2.2E-07 37.5 2.3 28 50-77 23-51 (248)
451 PRK13639 cbiO cobalt transport 95.5 0.0095 2.4E-07 37.2 2.5 24 55-78 30-53 (275)
452 PRK11819 putative ABC transpor 95.5 0.013 3.3E-07 36.4 3.2 27 51-77 30-57 (556)
453 cd00046 DEXDc DEAD-like helica 95.5 0.0085 2.2E-07 37.5 2.3 19 54-72 1-19 (144)
454 PRK13647 cbiO cobalt transport 95.5 0.0091 2.3E-07 37.3 2.4 24 55-78 33-56 (273)
455 PRK13652 cbiO cobalt transport 95.5 0.0089 2.3E-07 37.4 2.3 23 56-78 33-55 (277)
456 cd03292 ABC_FtsE_transporter F 95.5 0.0098 2.5E-07 37.1 2.5 28 50-77 23-51 (214)
457 cd03254 ABCC_Glucan_exporter_l 95.5 0.014 3.7E-07 36.1 3.4 41 51-91 26-69 (229)
458 PRK13645 cbiO cobalt transport 95.5 0.0094 2.4E-07 37.2 2.4 22 56-77 40-61 (289)
459 PRK10261 glutathione transport 95.5 0.009 2.3E-07 37.4 2.3 25 56-80 45-69 (623)
460 COG0572 Udk Uridine kinase [Nu 95.5 0.018 4.6E-07 35.4 3.8 29 56-84 11-39 (218)
461 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.5 0.013 3.2E-07 36.4 3.0 44 56-99 32-86 (238)
462 pfam06745 KaiC KaiC. This fami 95.5 0.012 3.1E-07 36.5 2.9 32 54-85 20-55 (231)
463 cd03235 ABC_Metallic_Cations A 95.5 0.011 2.7E-07 36.9 2.6 24 55-78 27-50 (213)
464 pfam00270 DEAD DEAD/DEAH box h 95.4 0.01 2.6E-07 37.0 2.5 19 53-71 14-32 (167)
465 PRK10938 putative molybdenum t 95.4 0.0096 2.4E-07 37.2 2.3 24 55-78 31-54 (490)
466 PRK13631 cbiO cobalt transport 95.4 0.011 2.7E-07 36.9 2.6 25 55-79 54-78 (320)
467 PRK10253 iron-enterobactin tra 95.4 0.0094 2.4E-07 37.2 2.3 29 50-78 29-58 (265)
468 cd02024 NRK1 Nicotinamide ribo 95.4 0.019 4.9E-07 35.3 3.8 23 56-78 2-24 (187)
469 PRK08233 hypothetical protein; 95.4 0.016 4.1E-07 35.7 3.3 23 55-77 5-27 (182)
470 cd03258 ABC_MetN_methionine_tr 95.4 0.0095 2.4E-07 37.2 2.1 28 51-78 28-56 (233)
471 COG1855 ATPase (PilT family) [ 95.4 0.022 5.5E-07 34.9 3.9 25 53-77 263-287 (604)
472 PRK13636 cbiO cobalt transport 95.4 0.012 3E-07 36.6 2.5 24 55-78 34-57 (285)
473 COG1117 PstB ABC-type phosphat 95.3 0.013 3.3E-07 36.3 2.8 43 56-102 36-79 (253)
474 pfam02367 UPF0079 Uncharacteri 95.3 0.017 4.4E-07 35.6 3.4 37 56-93 18-54 (123)
475 cd03214 ABC_Iron-Siderophores_ 95.3 0.012 3.1E-07 36.5 2.6 45 50-102 21-66 (180)
476 COG1131 CcmA ABC-type multidru 95.3 0.021 5.5E-07 34.9 3.9 48 53-100 29-88 (293)
477 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.3 0.012 3E-07 36.6 2.5 28 51-78 23-51 (144)
478 PRK13643 cbiO cobalt transport 95.3 0.012 3E-07 36.6 2.4 28 51-78 29-57 (288)
479 PRK11124 artP arginine transpo 95.3 0.012 3.2E-07 36.5 2.6 22 56-77 31-52 (242)
480 COG4618 ArpD ABC-type protease 95.3 0.091 2.3E-06 30.9 7.0 54 51-104 359-424 (580)
481 cd02025 PanK Pantothenate kina 95.3 0.022 5.6E-07 34.9 3.7 22 58-79 4-25 (220)
482 TIGR02858 spore_III_AA stage I 95.3 0.011 2.9E-07 36.7 2.2 41 52-100 122-162 (282)
483 PRK09544 znuC high-affinity zi 95.3 0.013 3.4E-07 36.3 2.6 28 51-78 27-55 (251)
484 TIGR00678 holB DNA polymerase 95.3 0.028 7E-07 34.2 4.2 27 51-77 12-38 (216)
485 PRK11231 fecE iron-dicitrate t 95.3 0.013 3.3E-07 36.3 2.5 23 56-78 31-53 (255)
486 cd03232 ABC_PDR_domain2 The pl 95.3 0.014 3.5E-07 36.2 2.6 27 50-76 29-56 (192)
487 PRK11860 bifunctional 3-phosph 95.3 0.017 4.2E-07 35.7 3.1 24 52-75 85-108 (662)
488 PRK13477 bifunctional pantoate 95.2 0.017 4.3E-07 35.6 3.1 29 56-84 287-315 (512)
489 cd03251 ABCC_MsbA MsbA is an e 95.2 0.014 3.5E-07 36.2 2.6 45 55-99 30-85 (234)
490 cd03259 ABC_Carb_Solutes_like 95.2 0.011 2.8E-07 36.8 2.1 44 51-102 23-67 (213)
491 cd04157 Arl6 Arl6 subfamily. 95.2 0.017 4.2E-07 35.6 3.0 20 55-74 1-20 (162)
492 COG0630 VirB11 Type IV secreto 95.2 0.079 2E-06 31.2 6.4 35 52-86 142-178 (312)
493 TIGR02030 BchI-ChlI magnesium 95.2 0.035 8.8E-07 33.6 4.6 43 19-77 5-49 (340)
494 cd03240 ABC_Rad50 The catalyti 95.2 0.017 4.4E-07 35.5 3.0 22 56-77 25-46 (204)
495 PRK10575 iron-hydroxamate tran 95.2 0.014 3.5E-07 36.2 2.5 23 56-78 40-62 (265)
496 COG1485 Predicted ATPase [Gene 95.2 0.16 4E-06 29.3 7.9 74 6-79 8-91 (367)
497 PRK13548 hmuV hemin importer A 95.1 0.015 3.9E-07 35.9 2.6 29 50-78 24-53 (257)
498 PRK13638 cbiO cobalt transport 95.1 0.015 3.9E-07 35.9 2.5 29 50-78 23-52 (271)
499 PRK07993 DNA polymerase III su 95.1 0.021 5.4E-07 35.0 3.2 27 51-77 22-48 (334)
500 COG1126 GlnQ ABC-type polar am 95.1 0.016 4E-07 35.8 2.5 21 56-76 31-51 (240)
No 1
>TIGR00390 hslU heat shock protein HslVU, ATPase subunit HslU; InterPro: IPR004491 This family of proteins represent HslU, a bacterial clpX homolog, which is an ATPase and chaperone belonging to the AAA Clp/Hsp100 family and a component of the eubacterial proteasome. ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, ClpXP) complex in other eubacteria. Genes homologous to eubacterial HslV, IPR001353 from INTERPRO, (ClpQ,) and HslU (ClpY, ClpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa. They are expressed as precursors, with a propeptide that is removed to produce the active protease. The protease is probably located in the kinetoplast (mitochondrion). Phylogenetic analysis shows that HslV and HslU from trypanosomatids form a single clad with other eubacterial homologs . ; GO: 0005515 protein binding, 0005524 ATP binding, 0009377 HslUV protease activity, 0016887 ATPase activity, 0005737 cytoplasm, 0009376 HslUV protease complex.
Probab=100.00 E-value=0 Score=877.89 Aligned_cols=430 Identities=52% Similarity=0.887 Sum_probs=404.2
Q ss_pred CCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 88899999862030486899999999998778864086444466566866996798886899999999970787797143
Q gi|254780829|r 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 7 ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
||||+||++||+|||||++|||++|||++|||||.+++..+|+|+.||||||+||||+|||++||+|||.+++||++++|
T Consensus 1 ~tPreiV~~LD~yIiGQ~~AKk~VAiALrNRyrR~~L~~~L~~EV~PKNILMiGpTGVGKTEIARRlAKL~~aPFiKVEA 80 (463)
T TIGR00390 1 MTPREIVAELDKYIIGQDEAKKAVAIALRNRYRRSQLEEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (463)
T ss_pred CCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98435887514422063667889999988667761287111356587430432788985447999999984489146664
Q ss_pred CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC----------------------
Q ss_conf 4101212234310134678887652127899856549888868887555531143211----------------------
Q gi|254780829|r 87 TKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTAT---------------------- 144 (437)
Q Consensus 87 T~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~---------------------- 144 (437)
|+|||+||||+|||||+++|.+.|...++......+.+.+.....+|+.+.+.++...
T Consensus 81 tKfTEVGYVGrdVeSmvRDL~~~aV~lV~~e~~~~~r~~aee~~~erI~~~L~pp~~n~sGvknPfe~f~~~~ePN~~~e 160 (463)
T TIGR00390 81 TKFTEVGYVGRDVESMVRDLVDTAVKLVKEEKIEKVRDRAEEAAEERIVDKLLPPAKNQSGVKNPFEMFWGSEEPNEKDE 160 (463)
T ss_pred EEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHEECCCCCCHHHH
T ss_conf 10011021424100367878999999999988998899999999889998728889887766672230005668740246
Q ss_pred -CHHHHHHHHHHHH--------CCCCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHH
Q ss_conf -0046689889861--------68888549987535545-5443346676663210001101001354322100000102
Q gi|254780829|r 145 -SNTREVFRKKLRD--------GEISDKEIDIEVADTSS-DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK 214 (437)
Q Consensus 145 -~~~~~~~~~~l~~--------~~~~~~~i~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
......+++.++. |++++.+|+|++....+ .......|++.-.-..+++..+...++.. .+...+.++.
T Consensus 161 ~~~~~~~~~~klr~r~ahqlalGeLDd~~iei~v~~~~pf~~~e~~~pp~~e~~~~~l~~~l~~l~~~~-kkkr~l~ik~ 239 (463)
T TIGR00390 161 EESSREALRKKLRERMAHQLALGELDDKEIEIEVSAKSPFSGIEILAPPGMEEMTMNLQSLLQNLGPDK-KKKRKLKIKE 239 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-CEECCCCHHH
T ss_conf 899999999999998776630366467158998613787126750588855677678999986204532-0001145699
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCC-CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 355332788863031011123678887532221002221001357-6656543321012234320466522112466642
Q gi|254780829|r 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARD-SGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINT 293 (437)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~-~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~ 293 (437)
|...+..+++.++++.+.+...|...+|..|++|+||+||||.++ ..++.|+|.||+|||++|++||+.|.|+||.+.|
T Consensus 240 A~~~L~~Ee~~kL~d~e~~~~~A~~~vE~~GiiFIDEIDKIa~~~~e~S~~DvSrEGVQRDlLPiVEGS~V~TKyG~VkT 319 (463)
T TIGR00390 240 AKKALIAEEAAKLVDPEEIKQEAIDRVEQSGIIFIDEIDKIAKKGKESSGADVSREGVQRDLLPIVEGSTVNTKYGSVKT 319 (463)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEC
T ss_conf 99998999887336966643899999984782898530354216888678887655651011420226664310010422
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Q ss_conf 02466401675422112125543345126886155424678887643468899999999875196899842499999999
Q gi|254780829|r 294 DHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADV 373 (437)
Q Consensus 294 ~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~ 373 (437)
+|++||++|||++.||||||||+|||||++|.|+.||.+++.+||++|+|||++||++||+++||+|.||++|+..||+.
T Consensus 320 dHiLFIAaGAF~lAKPSDLIPELQGRfPirVEL~~Lt~~d~~rIL~~p~~Sl~kQY~ALl~~eGv~i~F~d~AI~~iAe~ 399 (463)
T TIGR00390 320 DHILFIAAGAFHLAKPSDLIPELQGRFPIRVELEALTVDDFERILTEPKNSLIKQYQALLKVEGVNIEFSDEAIKKIAEL 399 (463)
T ss_pred CHHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEEECHHHHHHHHHH
T ss_conf 15787675232027776666311066737787676329999996208343689999998876276403355689999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9984040012372467999999867762127568776899859999989999985213454129
Q gi|254780829|r 374 AVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 (437)
Q Consensus 374 A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~l~e~~Dls~~~l 437 (437)
||.+|..++|+||||||||||++|+|++||+|++++++|.||.+||.++|+.+.+|+|||||||
T Consensus 400 ay~~N~~teniGARRLHTv~E~lledisFea~D~~~~~~~I~~~YV~~kL~~~~~~~dL~~fIL 463 (463)
T TIGR00390 400 AYNVNQKTENIGARRLHTVLERLLEDISFEAPDVSGQKVTITADYVEKKLGDLVADEDLSRFIL 463 (463)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9981644233465046689999998751266686343245078999999878873022100269
No 2
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional
Probab=100.00 E-value=0 Score=859.73 Aligned_cols=430 Identities=57% Similarity=0.923 Sum_probs=400.9
Q ss_pred CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 76888999998620304868999999999987788640864444665668669967988868999999999707877971
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
.+|||++|++|||+|||||++|||+||||+||||||++++..++.|+.||||||+||||||||+|||+||++++|||+++
T Consensus 2 ~~ltP~eIv~~LD~yIIGQ~~AKkavAVAlrNr~RR~~l~~~lr~Ei~pkNILmIGPTGvGKTeIARrLAkl~~aPFvkv 81 (442)
T PRK05201 2 SELTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 81 (442)
T ss_pred CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 98998999998536010827766787778877787531662212334643168878888667899999999848985875
Q ss_pred ECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------CCCCHHHHHHHH
Q ss_conf 434101212234310134678887652127899856549888868887555531143-----------211004668988
Q gi|254780829|r 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGK-----------TATSNTREVFRK 153 (437)
Q Consensus 85 daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 153 (437)
|||+|||+||||+|||||+++|++.|...++......+...+...+.+++.+++.+. .....+...+++
T Consensus 82 eATk~TEvGYvGrDVEsiIrdLv~~a~~~~k~~~~~~v~~~A~~~a~~ril~~L~~~~~~~~~~~~~~~~~~~tre~~r~ 161 (442)
T PRK05201 82 EATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEEEESSATRQKFRK 161 (442)
T ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 21310003435643788999999999999999999999999999999999998558655555554542023678999999
Q ss_pred HHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 98616888854998753554554433466766632100011010013543221000001023553327888630310111
Q gi|254780829|r 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 (437)
Q Consensus 154 ~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (437)
.++.+.+++.+|++.++..+..... .+.+......++.....+.++. ..+....+++.|...+..+++.++++.+.+
T Consensus 162 ~Lr~G~Ldd~~IeIev~~~~~~~~~--~~~g~~~~~~~l~~~~~~~~~~-~~kkr~~tVkeA~~iL~~eEa~klid~d~v 238 (442)
T PRK05201 162 KLREGELDDKEIEIEVADAPGVEIM--GPPGMEEMGNQLQDMFGNLGPK-KKKKRKLKVKEARKLLIEEEAAKLVDQEEI 238 (442)
T ss_pred HHHCCCCCCCEEEEEECCCCCCCCC--CCCCHHHHHHHHHHHHHCCCCC-CCCEEEEEHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 9865886655578861577777777--8875155666799876402788-874046469999999999999862488999
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 23678887532221002221001357665654332101223432046652211246664202466401675422112125
Q gi|254780829|r 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313 (437)
Q Consensus 234 ~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~gli 313 (437)
...|...+|..||+|+|++|||+.++...+.|+|.+|+|+++++++|++.|.|+|+.+.|+|++|||+||||..||++||
T Consensus 239 ~~eAi~~aEq~GIVFIDEIDKIa~~~~~~g~DVS~EGVQrdLLpivEGt~V~tK~G~V~TdhILFIasGAFh~sKPSDLI 318 (442)
T PRK05201 239 KQEAIERVEQNGIVFIDEIDKIAKRGEGSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVAKPSDLI 318 (442)
T ss_pred HHHHHHHHHHCCCEEECHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
T ss_conf 99999988761704511465653035788989773307888788753885556777602550345504500147820224
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 54334512688615542467888764346889999999987519689984249999999999840400123724679999
Q gi|254780829|r 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 (437)
Q Consensus 314 pE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~ 393 (437)
|||+||||++|.|++|++++|++|||||+|||++||++||+++||+|+||++|+++||+.|+++|++++|+|||||||||
T Consensus 319 PEl~GRlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~egv~L~Ft~~Al~~IA~~A~~~n~~~~~iGAR~L~tI~ 398 (442)
T PRK05201 319 PELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVM 398 (442)
T ss_pred HHHCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 98717550588824499999999967861578999999986249679984799999999999851447667737889999
Q ss_pred HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99867762127568776899859999989999985213454129
Q gi|254780829|r 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 (437)
Q Consensus 394 E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~l~e~~Dls~~~l 437 (437)
|++|+|+||++|++++++|.||+++|+++++++++++|||||||
T Consensus 399 E~vl~d~~Fe~p~~~~~~v~I~~~~V~~~l~~i~~~~DlskyIL 442 (442)
T PRK05201 399 EKLLEDISFEAPDRSGEKITIDAAYVDEKLGDLVKDEDLSRYIL 442 (442)
T ss_pred HHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 99989861468899997799889999999988763556054209
No 3
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=803.79 Aligned_cols=432 Identities=59% Similarity=0.934 Sum_probs=410.1
Q ss_pred CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 76888999998620304868999999999987788640864444665668669967988868999999999707877971
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
.+|||++|+++||+|||||++|||++|+|++|||||.+++..+|+|+.||||||+||||+|||++||+||+.+++||+++
T Consensus 2 ~~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 2 SEMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 98887999999876740717778899999998999975478776225755358888888768899999999848983788
Q ss_pred ECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----------CCCHHHHHHHH
Q ss_conf 4341012122343101346788876521278998565498888688875555311432-----------11004668988
Q gi|254780829|r 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKT-----------ATSNTREVFRK 153 (437)
Q Consensus 85 daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 153 (437)
+||+|||+||||+|||||+++|++.+...++...+..+...+...+.+|+.+++.+.. ...++...+..
T Consensus 82 EATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rk 161 (444)
T COG1220 82 EATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRK 161 (444)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 76421340325645899999999999999999999999999999999999998669875546667300002679999999
Q ss_pred HHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 98616888854998753554554433466766632100011010013543221000001023553327888630310111
Q gi|254780829|r 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 (437)
Q Consensus 154 ~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (437)
.|+.+++++.+|++.+............+++......+++..+...++. ..+..+.+++.|...+..+++.++++.+.+
T Consensus 162 kLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~-kkkkrk~~Vk~A~~~L~~eea~KLid~e~i 240 (444)
T COG1220 162 KLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGK-KKKKRKLKVKEAKKLLIEEEADKLIDQEEI 240 (444)
T ss_pred HHHCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEEEHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 9975887761799997226787534689985789999999999864688-730366569999998777788762699999
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 23678887532221002221001357665654332101223432046652211246664202466401675422112125
Q gi|254780829|r 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313 (437)
Q Consensus 234 ~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~gli 313 (437)
...|....+.+|++|+|++|||+.++...+.++|.+|+|++++|++|++.|+|+||.+.|+|++||++||||..||+++|
T Consensus 241 ~~eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLi 320 (444)
T COG1220 241 KQEAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLI 320 (444)
T ss_pred HHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCEECCCHHHCC
T ss_conf 99999998856908973466787437889988664320102103105754431544401443788714820037813217
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 54334512688615542467888764346889999999987519689984249999999999840400123724679999
Q gi|254780829|r 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 (437)
Q Consensus 314 pE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~ 393 (437)
||++||||++|.|++|+.+|+++|||||++||++||++||+++||+|.||++|++.||+.|+++|..++|+|||+|||||
T Consensus 321 PELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvl 400 (444)
T COG1220 321 PELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVL 400 (444)
T ss_pred HHHCCCCCEEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 66627773488704489989999963760789999999973158348853799999999999855430001178899999
Q ss_pred HHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99867762127568776899859999989999985213454129
Q gi|254780829|r 394 ERVLEDISFSASDLQEKTVVIDAEYVRLHIGDFPSETDMYHFIL 437 (437)
Q Consensus 394 E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~l~e~~Dls~~~l 437 (437)
|++|+|++|++|++.+.+|.||++||+++++.|.+|+|||||||
T Consensus 401 ErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l~~n~DLsryIL 444 (444)
T COG1220 401 ERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDLVANEDLSRFIL 444 (444)
T ss_pred HHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCHHHHHC
T ss_conf 99998707058778997589758999999987751741565419
No 4
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=100.00 E-value=0 Score=750.76 Aligned_cols=342 Identities=28% Similarity=0.392 Sum_probs=288.2
Q ss_pred CHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCC----CCCCC------------CCCCCCCEEEECCCCCCHHHHHH
Q ss_conf 889999986203048689999999999877886408----64444------------66566866996798886899999
Q gi|254780829|r 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQL----PADLR------------DELMPKNILLVGPTGVGKTAISR 71 (437)
Q Consensus 8 tP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~----~~~~~------------~e~~psNiLLiGPtGtGKTlLAk 71 (437)
||++|++|||.||||||+|||+|||||||||||++. ...+. .|+.||||||||||||||||||+
T Consensus 91 ~P~eik~~LD~YVIGQe~AKKVLsVAVYNHYKRl~~~~~n~~~d~~D~nvelehleeVEL~KSNILLiGPTGSGKTLLAq 170 (452)
T TIGR00382 91 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNLKEKNKKSDNGDSNVELEHLEEVELSKSNILLIGPTGSGKTLLAQ 170 (452)
T ss_pred CCHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
T ss_conf 82799997213612310105254324112466653243045558840002354444433300662454688852689999
Q ss_pred HHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 99997078779714341012122343101346788876521278998565498888688875555311432110046689
Q gi|254780829|r 72 RLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVF 151 (437)
Q Consensus 72 tLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (437)
|||+.|||||+++|||++|||||||||||+++.+|+++|+||+++|++||+|++.++++.++.- ...-.++..++++|
T Consensus 171 TLA~~L~VPfAiADATtLTEAGYVGEDVENIL~~Llq~ad~DV~kA~kGIiYIDEIDKIaRkSE--N~SITRDVSGEGVQ 248 (452)
T TIGR00382 171 TLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIARKSE--NPSITRDVSGEGVQ 248 (452)
T ss_pred HHHHHCCCCEEECCHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHCCCEEEEECCCCHHHHCC--CCEEEEEECCCHHH
T ss_conf 9998738874211111020066424228899999987414552452785089842231012157--78011221755499
Q ss_pred HHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCH
Q ss_conf 88986168888549987535545544334667666321000110100135432210000010235533278886303101
Q gi|254780829|r 152 RKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMD 231 (437)
Q Consensus 152 ~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 231 (437)
|++|+..+|+-..|- .. +.+|++..+
T Consensus 249 QALLKi~EGTvA~vP----------------------Pq--------------------------------GGRKHP~~~ 274 (452)
T TIGR00382 249 QALLKIIEGTVANVP----------------------PQ--------------------------------GGRKHPQQE 274 (452)
T ss_pred HHHHHHHHCCEEEEC----------------------CC--------------------------------CCCCCCCCC
T ss_conf 999987603234317----------------------54--------------------------------488688657
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCC-CCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 11236788875322210022210013576656-54332101223432046652211246664202466401675422112
Q gi|254780829|r 232 TVHRDSIQMVENYGIVFLDEFDKIVARDSGNG-IGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPA 310 (437)
Q Consensus 232 ~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~-~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~ 310 (437)
.+..++.+++|.||+||.+....|..+....+ ++++.......... ..-..+....++||..|
T Consensus 275 ~iqiDTs~ILFICGGAF~GL~~iI~~R~~~~~~iGF~~~~~~~~~~~----------------~~~~~L~~v~~~DL~kF 338 (452)
T TIGR00382 275 FIQIDTSNILFICGGAFVGLEKIIKKRTEKKSSIGFGAEVKKKSKEK----------------SEEELLRQVEPEDLVKF 338 (452)
T ss_pred EEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH----------------HHHHHHHHHCHHHHHHH
T ss_conf 68864764001105434448999988745553335455210045787----------------89999975171112210
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 12554334512688615542467888764346889999999987519689984249999999999840400123724679
Q gi|254780829|r 311 DLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 (437)
Q Consensus 311 glipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~Lr 390 (437)
||||||+||+|+++.|++|++|+|++||++|||||++||+.||++|+|+|.|+++|+++||+.|+++|| ||||||
T Consensus 339 GLIPEfIGRLPV~a~L~~L~~eAL~~IL~~PkNAlvKQY~~lf~ld~VeL~F~~eAl~~IA~~A~~RkT-----GARGLR 413 (452)
T TIGR00382 339 GLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKLDNVELEFEEEALKAIAKKALERKT-----GARGLR 413 (452)
T ss_pred CCCCCCCCCCCCEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCC-----CCCHHH
T ss_conf 555101105340202787887899998525444488999997164561134558889999999985076-----751578
Q ss_pred HHHHHHHHHHHCCCCCC-CCCEEEECHHHHHHHHHHH
Q ss_conf 99999867762127568-7768998599999899999
Q gi|254780829|r 391 TVMERVLEDISFSASDL-QEKTVVIDAEYVRLHIGDF 426 (437)
Q Consensus 391 tI~E~~l~d~~fe~p~~-~~~~v~Id~~~V~~~l~~l 426 (437)
+|+|.+|+|.|||.|+. +..+|+||+++|.+...+.
T Consensus 414 sI~E~~lLDvMfeLPs~~~~~kv~it~~~v~~~~~p~ 450 (452)
T TIGR00382 414 SIVEGLLLDVMFELPSLEDLEKVVITKETVLKQSEPL 450 (452)
T ss_pred HHHHHHHHHHCCCCCCHHCCCEEEEEHHHHCCCCCCC
T ss_conf 9999998753147886115756787077642664456
No 5
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=100.00 E-value=0 Score=692.86 Aligned_cols=343 Identities=29% Similarity=0.396 Sum_probs=282.5
Q ss_pred CCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 8889999986203048689999999999877886408644--44665668669967988868999999999707877971
Q gi|254780829|r 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 7 ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~--~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
.||++|++|||+||||||+|||+|||||||||||++.... ...|+.||||||+|||||||||||||||++++|||+++
T Consensus 61 p~P~eI~~~LD~yVIGQ~~AKk~lsVAvyNHykRi~~~~~~~~~vei~KsNILliGPTG~GKTlla~tLAk~l~vPF~ia 140 (411)
T PRK05342 61 PTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRQNGSKSDDVELQKSNILLIGPTGSGKTLLAQTLARILNVPFAIA 140 (411)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 99799999862140284888899999999999998602133566521345389989999778899999999869998998
Q ss_pred ECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 43410121223431013467888765212789985654988886888755553114321100466898898616888854
Q gi|254780829|r 85 EVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKE 164 (437)
Q Consensus 85 daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (437)
|||+|||+||||+|||+++.||+++|++|+++|++||++.+.++++..+.. ..+..++..+.++|+.+|+..+++...
T Consensus 141 DAT~lTEaGYVGeDVE~ii~~Llq~Ad~dve~Ae~GIV~IDEIDKIarks~--~~s~trDVSgEGVQqaLLkiiEGt~v~ 218 (411)
T PRK05342 141 DATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSE--NPSITRDVSGEGVQQALLKILEGTVAS 218 (411)
T ss_pred EECEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCEEEEEEHHHHHHCCC--CCCCCCCCCCHHHHHHHHHHHCCCEEC
T ss_conf 612001267456079999999999828889988368288850234542478--888877765124899999987587141
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99875355455443346676663210001101001354322100000102355332788863031011123678887532
Q gi|254780829|r 165 IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENY 244 (437)
Q Consensus 165 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 244 (437)
|.. . +. ...+.+.+....+.+++|++.+||.++......|+-
T Consensus 219 vp~----~---------------gg---rkhp~~~~~~idT~nILFI~gGAF~GL~~II~~R~~---------------- 260 (411)
T PRK05342 219 VPP----Q---------------GG---RKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLG---------------- 260 (411)
T ss_pred CCC----C---------------CC---CCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHCC----------------
T ss_conf 188----8---------------77---778776516761471799911553358999986357----------------
Q ss_pred HHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 22100222100135766565433210122343204665221124666420246640167542211212554334512688
Q gi|254780829|r 245 GIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRV 324 (437)
Q Consensus 245 ~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v 324 (437)
..+++++..-... .......++....+.|+..|||||||+||||+++
T Consensus 261 ----------------~~~iGF~~~~~~~-----------------~~~~~~~~l~~v~p~DLi~fGlIPEfiGRlPViv 307 (411)
T PRK05342 261 ----------------KSGIGFGAEVKSK-----------------DEKDLGELLAQVEPEDLVKFGLIPEFIGRLPVVA 307 (411)
T ss_pred ----------------CCCCCCCCCCCCC-----------------CCCCHHHHHHHCCHHHHHHCCCCHHHHCCCCEEE
T ss_conf ----------------8876778876641-----------------1000567876279878887388377614664054
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 61554246788876434688999999998751968998424999999999984040012372467999999867762127
Q gi|254780829|r 325 HLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSA 404 (437)
Q Consensus 325 ~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe~ 404 (437)
+|++|++++|++|||||+|||++||++||+++||+|+||++|+++||++|++++| ||||||+|||++|+|+||++
T Consensus 308 ~L~~L~~~~L~~ILtePkNaLikQY~~LF~~dgV~L~Ft~~AL~~IA~~A~~~~t-----GARgLRsIlE~iLld~MFel 382 (411)
T PRK05342 308 TLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDDALEAIAKKAIERKT-----GARGLRSILEEVLLDVMFEL 382 (411)
T ss_pred ECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHCCC
T ss_conf 6244799999999658741599999999975496799868999999999998475-----74577999999978875448
Q ss_pred CCC-CCCEEEECHHHHHHHHHHHH
Q ss_conf 568-77689985999998999998
Q gi|254780829|r 405 SDL-QEKTVVIDAEYVRLHIGDFP 427 (437)
Q Consensus 405 p~~-~~~~v~Id~~~V~~~l~~l~ 427 (437)
|+. +++++.||+++|+++..+++
T Consensus 383 Ps~~~v~~v~It~~~V~~~~~P~~ 406 (411)
T PRK05342 383 PSREDVEKVVITEEVVEGKSKPLL 406 (411)
T ss_pred CCCCCCCEEEECHHHHCCCCCCEE
T ss_conf 898997099988799779998269
No 6
>KOG0745 consensus
Probab=100.00 E-value=0 Score=662.27 Aligned_cols=349 Identities=27% Similarity=0.372 Sum_probs=278.5
Q ss_pred CCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCC-----------------------------------------
Q ss_conf 888999998620304868999999999987788640864-----------------------------------------
Q gi|254780829|r 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA----------------------------------------- 45 (437)
Q Consensus 7 ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~----------------------------------------- 45 (437)
.||++|++|||+|||||+.|||+|||||||||||+..+.
T Consensus 134 P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~ 213 (564)
T KOG0745 134 PTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAK 213 (564)
T ss_pred CCHHHHHHHHHHHEECHHHHHHEEEEHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
T ss_conf 88699998866661035542202320356778887413488888876544303677885200254320136554210103
Q ss_pred -----CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----444665668669967988868999999999707877971434101212234310134678887652127899856
Q gi|254780829|r 46 -----DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 (437)
Q Consensus 46 -----~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~ 120 (437)
+...+++||||||+||||+||||||+|||+++||||++||||++||+||||+||||+|++|++.|++++++|++|
T Consensus 214 ~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqG 293 (564)
T KOG0745 214 ALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQG 293 (564)
T ss_pred CCCCCCCCEEEECCCEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHCC
T ss_conf 55543454154035479977888764389999999708876873255220055345429999999999725789988267
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 54988886888755553114321100466898898616888854998753554554433466766632100011010013
Q gi|254780829|r 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVM 200 (437)
Q Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (437)
|++.+.++++.+... ..+..++..++++|+.+|++.+++-.+| +..+.+. ......
T Consensus 294 IVflDEvDKi~~~~~--~i~~~RDVsGEGVQQaLLKllEGtvVnV----peK~~~~------------------~~rgd~ 349 (564)
T KOG0745 294 IVFLDEVDKITKKAE--SIHTSRDVSGEGVQQALLKLLEGTVVNV----PEKGSRR------------------KPRGDT 349 (564)
T ss_pred EEEEEHHHHHCCCCC--CCCCCCCCCCHHHHHHHHHHHCCCEECC----CCCCCCC------------------CCCCCE
T ss_conf 388760124413676--5454445662669999999852627702----6778777------------------899985
Q ss_pred CCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCC
Q ss_conf 54322100000102355332788863031011123678887532221002221001357665654332101223432046
Q gi|254780829|r 201 GSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 (437)
Q Consensus 201 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e 280 (437)
....+.+++|+..+||.+++...++|+-+ ..++|...-.+ ++....-.-.
T Consensus 350 vqiDTtnILFiasGAF~~Ldk~I~rR~~d--------------~slGFg~~s~~---------------~vr~~~~~~s- 399 (564)
T KOG0745 350 VQIDTTNILFIASGAFVGLDKIISRRLDD--------------KSLGFGAPSSK---------------GVRANMATKS- 399 (564)
T ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCC--------------HHCCCCCCCCC---------------CCHHHCCCCC-
T ss_conf 89713666888034323569898876300--------------00156788874---------------2001103466-
Q ss_pred CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 65221124666420246640167542211212554334512688615542467888764346889999999987519689
Q gi|254780829|r 281 GSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 (437)
Q Consensus 281 ~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L 360 (437)
...........++......|+..|||||||+||||++|+|++|++++|++|||||+|+|+.||+.+|.+++|+|
T Consensus 400 ------~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L 473 (564)
T KOG0745 400 ------GVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVEL 473 (564)
T ss_pred ------CCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHCCCCEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCEEE
T ss_conf ------73046778899986346321355267287716652576524268888999873554668999999855577469
Q ss_pred EECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHH
Q ss_conf 984249999999999840400123724679999998677621275687768998599999
Q gi|254780829|r 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 (437)
Q Consensus 361 ~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~ 420 (437)
.||++|++.||+.|+++|| ||||||+|||++|+|+|||+|+|++..|+||+++|+
T Consensus 474 ~fTe~Al~~IAq~Al~r~T-----GARgLRsIlE~~LleamfevPGSdI~~V~Vdee~v~ 528 (564)
T KOG0745 474 HFTEKALEAIAQLALKRKT-----GARGLRSILESLLLEAMFEVPGSDIKAVLVDEEAVK 528 (564)
T ss_pred EECHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHC
T ss_conf 8669999999999876143-----467899999999764014578875479996178845
No 7
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=661.09 Aligned_cols=345 Identities=27% Similarity=0.380 Sum_probs=282.2
Q ss_pred CCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 888999998620304868999999999987788640864-4446656686699679888689999999997078779714
Q gi|254780829|r 7 FSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85 (437)
Q Consensus 7 ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~d 85 (437)
-||++|+++||+||||||+|||+|||||||||||++... ....|+.||||||+|||||||||||+|||+.+||||.++|
T Consensus 50 PtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 50 PTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred CCHHHHHHHHHHHEECCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEECCEEEECCCCCCHHHHHHHHHHHHCCCEEECC
T ss_conf 98699999865243262543103466410688998604887763532031799888997577999999998489847514
Q ss_pred CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 34101212234310134678887652127899856549888868887555531143211004668988986168888549
Q gi|254780829|r 86 VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEI 165 (437)
Q Consensus 86 aT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 165 (437)
||++||+||||+|||+++.||+++|++|+++|++||++++.++++..+.- .....++..+.++|+.+|+..+++...|
T Consensus 130 ATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSe--n~SITRDVSGEGVQQALLKiiEGTvasV 207 (408)
T COG1219 130 ATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSE--NPSITRDVSGEGVQQALLKIIEGTVASV 207 (408)
T ss_pred CCCHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCCEEEEECHHHHHCCCC--CCCCCCCCCCHHHHHHHHHHHCCCEECC
T ss_conf 44121066355008999999998764588888288599851025420578--9872343673589999999970751023
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 98753554554433466766632100011010013543221000001023553327888630310111236788875322
Q gi|254780829|r 166 DIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 (437)
Q Consensus 166 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 245 (437)
.. .+...++.+-+-...+.+++|++.+||.++......|
T Consensus 208 PP----------------------qGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R------------------- 246 (408)
T COG1219 208 PP----------------------QGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKR------------------- 246 (408)
T ss_pred CC----------------------CCCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHH-------------------
T ss_conf 99----------------------9888798420488737634678244010399999986-------------------
Q ss_pred HHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 21002221001357665654332101223432046652211246664202466401675422112125543345126886
Q gi|254780829|r 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVH 325 (437)
Q Consensus 246 ~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~ 325 (437)
....+++++.+....+. ....-.++....+.|+..|||||||+||+|++++
T Consensus 247 -------------~~~~~iGF~a~~~~~~~----------------~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~ 297 (408)
T COG1219 247 -------------LGKKGIGFGAEVKSKSK----------------KKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIAT 297 (408)
T ss_pred -------------CCCCCCCCCCCCCCHHH----------------HHHHHHHHHHCCHHHHHHCCCCHHHHCCCCEEEE
T ss_conf -------------26874245664453444----------------4128899875486878870883887266632646
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 15542467888764346889999999987519689984249999999999840400123724679999998677621275
Q gi|254780829|r 326 LKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS 405 (437)
Q Consensus 326 l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe~p 405 (437)
|++|++++|++||++|||+|++||++||+++||+|+|+++|+++||++|++++| ||||||+|||.+|+|.|||+|
T Consensus 298 L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkT-----GARGLRsI~E~~lld~MfelP 372 (408)
T COG1219 298 LEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKT-----GARGLRSIIEELLLDVMFELP 372 (408)
T ss_pred HHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHCC
T ss_conf 101599999999726517899999999644691699748999999999998433-----535799999999999885278
Q ss_pred CCC-CCEEEECHHHHHHHHHHHHH
Q ss_conf 687-76899859999989999985
Q gi|254780829|r 406 DLQ-EKTVVIDAEYVRLHIGDFPS 428 (437)
Q Consensus 406 ~~~-~~~v~Id~~~V~~~l~~l~e 428 (437)
+.+ +.+|.||+++|++...+++.
T Consensus 373 s~~~v~~v~I~~~~v~~~~~p~l~ 396 (408)
T COG1219 373 SLEDVEKVVITEEVVDGNAEPLLI 396 (408)
T ss_pred CCCCCEEEEEEHHHHCCCCCCEEE
T ss_conf 867850899768884788887276
No 8
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=100.00 E-value=0 Score=469.80 Aligned_cols=358 Identities=14% Similarity=0.097 Sum_probs=326.8
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCC----CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCC
Q ss_conf 30486899999999998778864086444466----56686699679888689999999997078779714341012122
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDE----LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e----~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gy 94 (437)
-|-|+||||.=|---| -+++.+.|.. .+||||||+|||||||||||||+|||++||||+++||+|.|||
T Consensus 60 DVAG~dEAKeEl~EiV------dFLK~P~kf~~LGaKIPKGVLLvGPPGTGKTLLAKAvAGEA~VPFF~iSGSdFVEMF- 132 (505)
T TIGR01241 60 DVAGIDEAKEELVEIV------DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF- 132 (505)
T ss_pred CCCCCHHHHHHHHHHH------HHCCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCEEECCCCEEECC-
T ss_conf 4445323334333134------222696379872788987147317878424678875202588962474076101112-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 343101346788876521278998565498888688875555-3114321100466898898616888854998753554
Q gi|254780829|r 95 VGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILD-ALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTS 173 (437)
Q Consensus 95 vG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~ 173 (437)
|+++++|++|.|..+.++|||+||+|+|+++++.|.++ .++||+++++|.||++.+|+.+...+..|.+..+|+|
T Consensus 133 ----VGVGASRVRDLFeqAK~nAPCIIFIDEIDAVGr~RGaG~lGGGnDEREQTLNQLLVEMDGF~~~~gvIv~AATNRP 208 (505)
T TIGR01241 133 ----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGELGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRP 208 (505)
T ss_pred ----CCCCCEEHHHHHHHHHHHCCCEEEEECHHHCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCCCEEEEEECCCC
T ss_conf ----0564000144579999718970564010000333564366765413554332331331785898857998504884
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 55443346676663210001101001354322100000102355332788863031011123678887532221002221
Q gi|254780829|r 174 SDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD 253 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ 253 (437)
+-+++. .++|+++++++....|...++.....+|.....--+..+....+|.|+++++++.|+.+||++.+|.+....
T Consensus 209 DvLD~A--LLRPGRFDRQv~V~~PD~~GR~~IL~VH~~~~kLa~~vdL~~~Ar~TPGfSGADLaNl~NEAALlAAR~n~~ 286 (505)
T TIGR01241 209 DVLDPA--LLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKT 286 (505)
T ss_pred CCCCCC--CCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 116510--068787445134588874678999999854889970247799970156876788999999999998617986
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC-CCCCEEEEECC-CCCH
Q ss_conf 001357665654332101223432046652211246664202466401675422112125543-34512688615-5424
Q gi|254780829|r 254 KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI-QGRFPVRVHLK-SLNK 331 (437)
Q Consensus 254 ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~-~GR~p~~v~l~-~L~~ 331 (437)
.|.+.+...+.|+...|++++++.+++.++..|+|||+||+.+.|.++.+++++|+|++|++- .++....+|-+ ....
T Consensus 287 ~i~~~~~eeA~Drv~~G~ekKsr~is~~eK~~vAYHEaGHAl~G~~~~~~DpV~KvTIIPRG~~AlG~t~~lP~~~D~~l 366 (505)
T TIGR01241 287 EITMNDIEEAVDRVIAGLEKKSRVISEKEKKIVAYHEAGHALVGLLLKDADPVHKVTIIPRGQGALGYTQFLPEEGDKYL 366 (505)
T ss_pred EECHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEEEECHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCEEECCCCCCCCC
T ss_conf 56288898787765227667885326777422201115789999735344752325631478441551683677444100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEECHHH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 6788876434688999999998751--9689984249---9999999998404001237246799999986776212
Q gi|254780829|r 332 SDFRLILTDTESNLILQYKELMKTE--GIILDFTEDS---IDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFS 403 (437)
Q Consensus 332 ~~l~~IL~epk~~l~~q~~~lf~~~--~v~L~ft~~A---l~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe 403 (437)
..-.+++.+...+|.++..+..-.- .| |.+| +...+++|.+|.| .+| |+..+..+.|+
T Consensus 367 ~~k~~L~~~i~~~lGGRaAEe~~fG~~~v----ttGA~nD~~~AT~iAr~MVT---~~G-------MS~klG~v~~~ 429 (505)
T TIGR01241 367 YTKKQLLAKIAVLLGGRAAEEIIFGEEEV----TTGASNDLKQATNIARAMVT---EWG-------MSEKLGPVAYG 429 (505)
T ss_pred CCHHHHHHHHHHHHHHHHEEEEECCCCCC----CCCCCHHHHHHHHHHHHHCC---CCC-------CCCCCCCCEEC
T ss_conf 36889999999873203100223078873----23621158999999997315---336-------74200451220
No 9
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=0 Score=337.29 Aligned_cols=348 Identities=14% Similarity=0.058 Sum_probs=292.1
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCC
Q ss_conf 304868999999999987788640864444----6656686699679888689999999997078779714341012122
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLR----DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~----~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gy 94 (437)
-|.|+|+||.-|.-.|- ++..+.+ .-.+|+||||+|||||||||||||+|++++|||++++||+|.||+
T Consensus 178 DVaG~~eaK~el~Eivd------fLk~P~k~~~~Gak~PkGvLL~GpPGTGKTlLAkAvAgEa~vpF~~~sgs~F~e~~- 250 (631)
T CHL00176 178 DVAGVEEAKEELEEVVT------FLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF- 250 (631)
T ss_pred CCCCCHHHHHHHHHHHH------HHCCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEHHHHHHHH-
T ss_conf 22885899999999999------83595887644996896589889899878899999856558846998837855642-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 34310134678887652127899856549888868887555531143211004668988986168888549987535545
Q gi|254780829|r 95 VGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 (437)
Q Consensus 95 vG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~ 174 (437)
|+++++|+++.|..+.+.|||+||+++++..+.+|..+..+++++.+++.++++.+|+.++.....|.+..++++.
T Consensus 251 ----vGvga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emDGf~~~~gViViaATNrpd 326 (631)
T CHL00176 251 ----VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMDGFEGNKGVIVIAATNRID 326 (631)
T ss_pred ----CCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCC
T ss_conf ----1555899999999998639969998710120114789888985089999999999842888788869998258855
Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 54433466766632100011010013543221000001023553327888630310111236788875322210022210
Q gi|254780829|r 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~k 254 (437)
.+++. ..+++++++.+....|...++.....++.......+.++...+++.++++++++.++.+||+...+.+...+.
T Consensus 327 ~LDpA--LlRPGRFDR~I~V~lPD~~gR~~IL~vh~k~~~l~~dvdl~~iA~~T~GfSGAdLanlvNEAal~AaR~~~~~ 404 (631)
T CHL00176 327 ILDAA--LLRPGRFDRQVTVSLPDFEGRLDILKVHARNKKLAEDVSLELIARRTPGFSGADLANLLNEAAILAARRRKNQ 404 (631)
T ss_pred CCCHH--HCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 45686--6268877549982698989999999999707866653009999862699867888769999999999847776
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 01357665654332101223432046652211246664202466401675422112125543345126886155424678
Q gi|254780829|r 255 IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 (437)
Q Consensus 255 i~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l~~L~~~~l 334 (437)
|...+...+.+....|.++. ..+.+.++..++||+++|+.+.+++.+.++..|.+++++.-.+++....+-+.......
T Consensus 405 it~~d~~~AidrV~~G~ek~-~~~~~~ekr~vAyHEAGHAlVa~ll~~~dpV~KVTIiPRG~AlG~t~~~P~ed~~l~Tk 483 (631)
T CHL00176 405 ITMSEIDEAIDRVIAGMEGT-PLADSKIKRLIAYHEVGHAIVGTLLPEHDPVQKVTLIPRGNARGLTWFTPNEDQSLISR 483 (631)
T ss_pred CCHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCCHH
T ss_conf 47889999999997165666-77898999999999999999999778987603899812788650577766433233429
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH---HHHHHHHHHHHHCCCCCCC
Q ss_conf 88764346889999999987519689984249---9999999998404001237
Q gi|254780829|r 335 RLILTDTESNLILQYKELMKTEGIILDFTEDS---IDALADVAVNLNSTVGDIG 385 (437)
Q Consensus 335 ~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~A---l~~IA~~A~~~~t~~~~~G 385 (437)
..++.+..-+|.++.++.+-...- +.|.+| |+..+++|..|-+ .+|
T Consensus 484 ~eL~~~I~vlLGGRaAEEivfG~~--~vTTGAs~DL~~AT~iAr~MV~---~~G 532 (631)
T CHL00176 484 SQLLARIVGALGGRAAEEVVFGST--EVTTGASNDLQQVTSLARQMVT---RFG 532 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC--CCCCCCHHHHHHHHHHHHHHHH---HHC
T ss_conf 999999999762577655323898--8777727899999999999999---858
No 10
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=0 Score=342.71 Aligned_cols=347 Identities=15% Similarity=0.067 Sum_probs=295.0
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCC
Q ss_conf 304868999999999987788640864444----6656686699679888689999999997078779714341012122
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLR----DELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGY 94 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~----~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gy 94 (437)
-|.|+|+||.-|.-.|- ++..+.+ .-.+|+||||+||||||||||||++|++++|||++++||+|.|++
T Consensus 153 DVaG~~eaK~el~EiVd------fLk~P~k~~~~Gak~PkGvLL~GPPGtGKTlLAkAvAgEa~vpF~~~sgsef~e~~- 225 (644)
T PRK10733 153 DVAGCDEAKEEVAELVE------YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF- 225 (644)
T ss_pred CCCCCHHHHHHHHHHHH------HHHCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHEE-
T ss_conf 40897899999999999------81297999974997998517779899877899999864559808997847730222-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 34310134678887652127899856549888868887555531143211004668988986168888549987535545
Q gi|254780829|r 95 VGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 (437)
Q Consensus 95 vG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~ 174 (437)
|+++.+|+++.|..+.+.|+|+||+++++..+..|.....+++++..++.++++.+|+.+...+..+.+..++++.
T Consensus 226 ----vGvga~rVR~lF~~Ar~~aP~IIFIDEiDaig~~R~~~~~gg~~e~~~tlNqlL~EmDGf~~~~~ViviaATNrpd 301 (644)
T PRK10733 226 ----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 301 (644)
T ss_pred ----EECCHHHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf ----5306899999999999669979999532203666789888983288878999999954888878769996269975
Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 54433466766632100011010013543221000001023553327888630310111236788875322210022210
Q gi|254780829|r 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~k 254 (437)
.+++. ..+++++++.+....|...++.....++.......+.++.....+.++++++++.++.+|++...+.+...+.
T Consensus 302 ~LD~A--LlRPGRFDr~I~V~lPd~~~R~~ILkvh~~~~~l~~dvdl~~lA~~T~GfSGADLaNlvNEAAl~AaR~~k~~ 379 (644)
T PRK10733 302 VLDPA--LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRV 379 (644)
T ss_pred CCCHH--HHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHCCCC
T ss_conf 54777--7168886559997798988999999999648877731158988445998670333259999999998708754
Q ss_pred HCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHH
Q ss_conf 01357665654332101223432046652211246664202466401675422112125543345126886155424678
Q gi|254780829|r 255 IVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDF 334 (437)
Q Consensus 255 i~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l~~L~~~~l 334 (437)
|.+.++..+.+....|.+++...+.+.++..++||+++|+.+.+++....+..|.+++++.-.+++....+-+.......
T Consensus 380 It~~d~e~A~drV~~G~ekks~~~se~ek~~vAyHEAGHAlva~~l~~~dpv~KVTIiPRG~AlG~t~~~P~ed~~~~tk 459 (644)
T PRK10733 380 VSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGDAISASR 459 (644)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEECCCCCHHHHHH
T ss_conf 30766899888851153456666899999999999998999999768988721799654787677311168510004259
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--CCCEEEECHHH---HHHHHHHHHHHHCCCCCCC
Q ss_conf 887643468899999999875--19689984249---9999999998404001237
Q gi|254780829|r 335 RLILTDTESNLILQYKELMKT--EGIILDFTEDS---IDALADVAVNLNSTVGDIG 385 (437)
Q Consensus 335 ~~IL~epk~~l~~q~~~lf~~--~~v~L~ft~~A---l~~IA~~A~~~~t~~~~~G 385 (437)
..++....-+|.++.++.+-. +.| |.+| |+..+++|..|.+ .+|
T Consensus 460 ~~l~~~I~vlLGGRaAEel~fG~~~v----TTGAsnDL~~AT~iAr~MV~---~~G 508 (644)
T PRK10733 460 QKLESQISTLYGGRLAEEIIYGPEHV----STGASNDIKVATNLARNMVT---QWG 508 (644)
T ss_pred HHHHHHHHHHHCHHHHHHHHHCCCCC----CCCCHHHHHHHHHHHHHHHH---HHC
T ss_conf 99998778863418877666079887----76827889999999999999---968
No 11
>KOG0734 consensus
Probab=100.00 E-value=0 Score=318.56 Aligned_cols=359 Identities=14% Similarity=0.096 Sum_probs=302.4
Q ss_pred CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 76888999998620304868999999999987788640864444----66566866996798886899999999970787
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLR----DELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~----~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
.--.|.++++--=+.|-|-||||.-|-.-| +| +..+.+ ....||||||+||||||||||||++|++++||
T Consensus 291 ~ev~p~~~~nv~F~dVkG~DEAK~ELeEiV--ef----LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734 291 SEVDPEQMKNVTFEDVKGVDEAKQELEEIV--EF----LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred CCCCHHHHCCCCCCCCCCHHHHHHHHHHHH--HH----HCCCHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 446846641655002147278999999999--98----609087643147588853876899975569999860556897
Q ss_pred EEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 79714341012122343101346788876521278998565498888688875555311432110046689889861688
Q gi|254780829|r 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160 (437)
Q Consensus 81 F~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (437)
||.++||+|-||+ |+++++|+++.|..+.++|||+||+++++.++.+|...... -..++.++++..|+.+.-
T Consensus 365 FF~~sGSEFdEm~-----VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~---y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734 365 FFYASGSEFDEMF-----VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH---YAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred EEECCCCCHHHHH-----HCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCHHH---HHHHHHHHHHHHHCCCCC
T ss_conf 4741662044542-----20148999999999873498599972002205667862778---999899999998428676
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 88549987535545544334667666321000110100135432210000010235533278886303101112367888
Q gi|254780829|r 161 SDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 (437)
Q Consensus 161 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~ 240 (437)
....|.+..++.+..++. ...+++++++++....|...|+......+.....--..++...++|.++++++++.++.+
T Consensus 437 NeGiIvigATNfpe~LD~--AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734 437 NEGIIVIGATNFPEALDK--ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred CCCEEEEECCCCHHHHHH--HHCCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCHHHHHHHH
T ss_conf 886699951687455568--734887553367468977332899999998348765677876722688987657899888
Q ss_pred HHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 75322210022210013576656543321012234320466522112466642024664016754221121255433451
Q gi|254780829|r 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRF 320 (437)
Q Consensus 241 ~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~ 320 (437)
|.++.-|..+....+.+++...+.|+..+|.+++...+.++.+..|+||+.+|+.+.+...++.+..|.++|+++-.-+.
T Consensus 515 NqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImPRG~sLG~ 594 (752)
T KOG0734 515 NQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMPRGPSLGH 594 (752)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEECCCCCCCCC
T ss_conf 89999998637401108877654433211521133446814544344332672588751278866430253257766663
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHH--HHHHCCCEEEECHHHHHHHHHHHHHHHCC
Q ss_conf 2688615542467888764346889999999--98751968998424999999999984040
Q gi|254780829|r 321 PVRVHLKSLNKSDFRLILTDTESNLILQYKE--LMKTEGIILDFTEDSIDALADVAVNLNST 380 (437)
Q Consensus 321 p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~--lf~~~~v~L~ft~~Al~~IA~~A~~~~t~ 380 (437)
....|-..-+.....+.|....-+++++.++ +|..+.|+-..+.| ++..++.|..|.|.
T Consensus 595 t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssD-l~qAT~lA~~MVt~ 655 (752)
T KOG0734 595 TSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSD-LDQATKLARRMVTK 655 (752)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHH
T ss_conf 13468654045779999998777623057788860677555665302-78899999999997
No 12
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-44 Score=308.21 Aligned_cols=364 Identities=15% Similarity=0.090 Sum_probs=301.4
Q ss_pred CCCCHHHHHHHHHH-------CEECHHHHHHHHHHHHHHHHHHHCCCCCCCC----CCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 76888999998620-------3048689999999999877886408644446----656686699679888689999999
Q gi|254780829|r 5 FNFSPREIVSELDR-------YIIGQQDAKRAVAIALRNRWRRQQLPADLRD----ELMPKNILLVGPTGVGKTAISRRL 73 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~-------~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~----e~~psNiLLiGPtGtGKTlLAktL 73 (437)
|+..+...+.+... -|.|.|+||.-++--|- .+....+. -.+|+++||+||||||||||||++
T Consensus 130 ~~~gkskak~~~~~~~~v~F~DVAG~dEakeel~EiVd------fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAv 203 (596)
T COG0465 130 FSFGKSKAKLYLEDQVKVTFADVAGVDEAKEELSELVD------FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAV 203 (596)
T ss_pred CCCCHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHH------HHHCCHHHHHCCCCCCCCEEEECCCCCCCHHHHHHH
T ss_conf 67775889874135667675664186799999999999------863855667523534565268559998727899998
Q ss_pred HHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 99707877971434101212234310134678887652127899856549888868887555531143211004668988
Q gi|254780829|r 74 ARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153 (437)
Q Consensus 74 A~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (437)
|++++||||+.++|+|.||+ |+++++|+++.|..+.+.|||++|+++++..++.|....++|+++.+++.++++.
T Consensus 204 AgEA~VPFf~iSGS~FVemf-----VGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLv 278 (596)
T COG0465 204 AGEAGVPFFSISGSDFVEMF-----VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 278 (596)
T ss_pred HCCCCCCCEECCCHHHHHHH-----CCCCCHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 45468983530344464431-----4788388899999855159966987634331454577889980699999988885
Q ss_pred HHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 98616888854998753554554433466766632100011010013543221000001023553327888630310111
Q gi|254780829|r 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 (437)
Q Consensus 154 ~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (437)
+++.++..+..|.+..++++.- .+....+++++++.+....+...++......+..............+++.++++++
T Consensus 279 EmDGF~~~~gviviaaTNRpdV--lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V~l~~iAr~tpGfsG 356 (596)
T COG0465 279 EMDGFGGNEGVIVIAATNRPDV--LDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSG 356 (596)
T ss_pred HHCCCCCCCCEEEECCCCCCCC--CHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCC
T ss_conf 2015788875488526787433--31765288776625544785156578887886415777766788898643778563
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 23678887532221002221001357665654332101223432046652211246664202466401675422112125
Q gi|254780829|r 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313 (437)
Q Consensus 234 ~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~gli 313 (437)
+..++..||....++......+.+.++..+.++...|..+....+.+.++..++||+++|+.+.+...++.+.+|.++++
T Consensus 357 AdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~KvtIiP 436 (596)
T COG0465 357 ADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKVTIIP 436 (596)
T ss_pred CHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEECC
T ss_conf 06765566889999883684675345388999996587768864674540325788999999997278876200355226
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 5433451268861554246788876434688999999998751-96899842499999999998404001237
Q gi|254780829|r 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE-GIILDFTEDSIDALADVAVNLNSTVGDIG 385 (437)
Q Consensus 314 pE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~-~v~L~ft~~Al~~IA~~A~~~~t~~~~~G 385 (437)
+.-++++..-.|.+.-....-..++.+....+..+..+..... .+.-.++++ +.....+|..|-| .+|
T Consensus 437 rG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~D-~~~at~~ar~mVt---~~G 505 (596)
T COG0465 437 RGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASND-LEKATDLARAMVT---EYG 505 (596)
T ss_pred CCHHHCCEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHH-HHHHHHHHHHHHH---HCC
T ss_conf 72220110038854532012778887999986671766646244501352131-8999999998533---518
No 13
>KOG0731 consensus
Probab=100.00 E-value=1.6e-43 Score=301.57 Aligned_cols=346 Identities=14% Similarity=0.084 Sum_probs=278.0
Q ss_pred HCEECHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCC
Q ss_conf 03048689999999999877886408644--4466566866996798886899999999970787797143410121223
Q gi|254780829|r 18 RYIIGQQDAKRAVAIALRNRWRRQQLPAD--LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYV 95 (437)
Q Consensus 18 ~~VvGQ~~AKk~lavav~nhy~R~~~~~~--~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyv 95 (437)
+-|.|+|+||.=|=--| || .+.+.. ...-.+|+|+||+|||||||||||||+|+|++|||++++||+|+|++
T Consensus 311 kDVAG~deAK~El~E~V--~f--LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~-- 384 (774)
T KOG0731 311 KDVAGVDEAKEELMEFV--KF--LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF-- 384 (774)
T ss_pred CCCCCHHHHHHHHHHHH--HH--HCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEECHHHHHHHH--
T ss_conf 10267089999999999--98--4398999874776767517878999867899998853058964641337888876--
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCC
Q ss_conf 431013467888765212789985654988886888755-5531143211004668988986168888549987535545
Q gi|254780829|r 96 GRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI-LDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSS 174 (437)
Q Consensus 96 G~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~ 174 (437)
|+...+|+++.+..+.++|||++++++++..+..|. .....++.+.+++.++++..++.+...+.+|.+..++++.
T Consensus 385 ---~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d 461 (774)
T KOG0731 385 ---VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPD 461 (774)
T ss_pred ---CCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
T ss_conf ---03434888999987432698079714542003125566667888078889998878752776778479981168866
Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 54433466766632100011010013543221000001-02355332788863031011123678887532221002221
Q gi|254780829|r 175 DISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSV-QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD 253 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ 253 (437)
.++.. ..+++++++++....+...++......+... ..+.........+.+++++++++.++.+++....+++...+
T Consensus 462 ~ld~a--llrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~ 539 (774)
T KOG0731 462 ILDPA--LLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLR 539 (774)
T ss_pred CCCHH--HCCCCCCCCCEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 42887--6498755552324698514168999998621577631567999986089996789986424999999873367
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHH
Q ss_conf 00135766565433210122343204665221124666420246640167542211212554334512688615542467
Q gi|254780829|r 254 KIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSD 333 (437)
Q Consensus 254 ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l~~L~~~~ 333 (437)
.+...+...+.++...|.+++...+.+.++..++||+++|+.+.|++.+..+++|.++++-. ...+-...|-+. ....
T Consensus 540 ~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kvsIiPGq-alG~a~~~P~~~-~l~s 617 (774)
T KOG0731 540 EIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKVSIIPGQ-ALGYAQYLPTDD-YLLS 617 (774)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHCCHHHHHHHHHHHCCCHHHHCCCCCCCCCEEEEECCCC-CCCEEEECCCCC-CCCC
T ss_conf 30156499999998612234501107776534221212523220134566740168733677-465378777645-3233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHH---HHHHHHHHHHHHC
Q ss_conf 888764346889999999987519689984249---9999999998404
Q gi|254780829|r 334 FRLILTDTESNLILQYKELMKTEGIILDFTEDS---IDALADVAVNLNS 379 (437)
Q Consensus 334 l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~A---l~~IA~~A~~~~t 379 (437)
..+++..+..+|..+..+..-.- .+.|.+| ++.+.+.|..+.+
T Consensus 618 k~ql~~rm~m~LGGRaAEev~fg---~~iTtga~ddl~kvT~~A~~~V~ 663 (774)
T KOG0731 618 KEQLFDRMVMALGGRAAEEVVFG---SEITTGAQDDLEKVTKIARAMVA 663 (774)
T ss_pred HHHHHHHHHHHHCCCHHHHEECC---CCCCCHHCCCHHHHHHHHHHHHH
T ss_conf 89999889988576203320327---75671110408899999999998
No 14
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=100.00 E-value=1e-32 Score=231.61 Aligned_cols=268 Identities=23% Similarity=0.385 Sum_probs=189.8
Q ss_pred HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 999998620304868999999999987788640864444665668-6699679888689999999997078779714341
Q gi|254780829|r 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTK 88 (437)
Q Consensus 10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ 88 (437)
+.+...|-+-|-|||+|.+.|.-|| ||-+ ++++.+--|- ++|++||||||||+|||.||+.|||+|..=|+||
T Consensus 489 ~~L~~~L~~kIfGQD~AI~~lv~ai----K~Sr--AGl~~~nkP~GSFLF~GPTGVGKTElak~LA~~LGv~l~RFDMSE 562 (774)
T TIGR02639 489 KNLEKELKAKIFGQDEAIEQLVSAI----KRSR--AGLGEPNKPVGSFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSE 562 (774)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHH----HHHH--HHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCHHCCCCCHH
T ss_conf 2044763013151589999999999----9987--424778881688886479896257889999997082001046504
Q ss_pred EEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 012-----------122343101346788876521278998565498888688875555311432110046689889861
Q gi|254780829|r 89 FTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRD 157 (437)
Q Consensus 89 ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 157 (437)
|+| +||||-|=+=.+.+-+ .+.|+-++ .-+..++ .+.+-.|+++|-|+-
T Consensus 563 YmEKHTVsRLIGsPPGYVGfEqGGLLT~Av-------rK~P~cVL----LLDEIEK---------AHpDI~NILLQVMD~ 622 (774)
T TIGR02639 563 YMEKHTVSRLIGSPPGYVGFEQGGLLTDAV-------RKHPHCVL----LLDEIEK---------AHPDIYNILLQVMDY 622 (774)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHH-------CCCCCEEE----HHHHHHH---------HHHHHHHHHHHHHCC
T ss_conf 468999987416888851316777212233-------12885354----2346666---------313366678766335
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 68888549987535545544334667666321000110100135432210000010235533278886303101112367
Q gi|254780829|r 158 GEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDS 237 (437)
Q Consensus 158 ~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a 237 (437)
..+||++.. -.+++|+.-++.+.-|....-
T Consensus 623 AtLTDN~Gr-------------------KaDFRNVILIMTSNaGa~E~~------------------------------- 652 (774)
T TIGR02639 623 ATLTDNNGR-------------------KADFRNVILIMTSNAGAREMS------------------------------- 652 (774)
T ss_pred CEEECCCCC-------------------EEEECCEEEEECCCCCCCCCC-------------------------------
T ss_conf 434058885-------------------763113688840370010236-------------------------------
Q ss_pred HHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 88875322210022210013576656543321012234320466522112466642024664016754221121255433
Q gi|254780829|r 238 IQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQ 317 (437)
Q Consensus 238 ~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~ 317 (437)
.+.++| .......+...- ..--|-|||.
T Consensus 653 -----~~~iGF------------------~~~~~~~~~~~A-----------------------------ikk~F~PEFR 680 (774)
T TIGR02639 653 -----KNPIGF------------------GGERVEDKSEKA-----------------------------IKKLFSPEFR 680 (774)
T ss_pred -----CCCCCC------------------CCCCCHHHHHHH-----------------------------HHHHCCCCCC
T ss_conf -----776442------------------555412334888-----------------------------9731587420
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--
Q ss_conf 451268861554246788876434688999999998751968998424999999999984040012372467999999--
Q gi|254780829|r 318 GRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMER-- 395 (437)
Q Consensus 318 GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~-- 395 (437)
+||..+++|++|+.+.+.+|... .+.+-+..+..-+|+|++|++|+..+|++++. +++|||.|..+++.
T Consensus 681 NRLDaii~F~~L~~~~~~~i~~K----~l~el~~~L~eK~v~l~l~~~a~~~LA~KGY~-----~efGARpl~R~I~~~i 751 (774)
T TIGR02639 681 NRLDAIIAFNDLSEEVAEKIVKK----FLDELQKQLNEKNVELELTDDAIKYLAEKGYD-----EEFGARPLARVIQEEI 751 (774)
T ss_pred CCCCCEEECCCCCHHHHHHHHHH----HHHHHHHHHHHCCEEEEECHHHHHHHHHHCCC-----CCCCCCHHHHHHHHHH
T ss_conf 13346441699889999999999----99999975530653787647899999863678-----1105544899988741
Q ss_pred ---HHHHHHCCCCCCCCCEEEEC
Q ss_conf ---86776212756877689985
Q gi|254780829|r 396 ---VLEDISFSASDLQEKTVVID 415 (437)
Q Consensus 396 ---~l~d~~fe~p~~~~~~v~Id 415 (437)
+..|+.|-- =.+|..|.|+
T Consensus 752 ~~~L~dEILFG~-LKkGG~v~~~ 773 (774)
T TIGR02639 752 KKPLSDEILFGK-LKKGGEVKIS 773 (774)
T ss_pred HHHHHHHHCCCC-CCCCCEEEEE
T ss_conf 257654420570-0167268873
No 15
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.98 E-value=1.3e-31 Score=224.46 Aligned_cols=284 Identities=23% Similarity=0.308 Sum_probs=177.4
Q ss_pred HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEE
Q ss_conf 999998620304868999999999987788640864444665668-66996798886899999999970---78779714
Q gi|254780829|r 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLA---GAPFIKVE 85 (437)
Q Consensus 10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l---~VPF~~~d 85 (437)
..+.+.|.+.||||++|.+++|-||+ |-+ .+++++--|- .+||+||||||||+|||+||.++ .-.++..|
T Consensus 501 ~~le~~L~~~ViGQd~AI~~vs~ai~----rsr--aGl~~~~rPigsFlf~GPTGvGKTElAK~LA~~LFg~e~~liR~D 574 (823)
T CHL00095 501 IHMEETLHKRIIGQDEAVVAVSKAIR----RAR--VGLKNPNRPIASFIFCGPTGVGKTELTKALASYFFGSEEAMIRLD 574 (823)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 87888787784076999999999999----997--089989997468998789988779999999999747820258853
Q ss_pred CCCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 341012-----------122343101346788876521278998565498888688875555311432110046689889
Q gi|254780829|r 86 VTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154 (437)
Q Consensus 86 aT~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (437)
+|+|.| .||||.+-+-.+.. .+++.|..++ ..+..++ .+.+..+.++|.
T Consensus 575 MSEy~E~hsvsrLIGaPPGYVGy~eGG~LTe-------aVrr~PysVv----LfDEIEK---------AHpdV~nilLQv 634 (823)
T CHL00095 575 MSEYMEKHTVSKLIGSPPGYVGYNEGGQLTE-------AVRKKPYTVV----LFDEIEK---------AHPDIFNLLLQI 634 (823)
T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCHHH-------HHHCCCCEEE----EECHHHH---------CCHHHHHHHHHH
T ss_conf 5101554207674589987667787882019-------8871998699----8621311---------388999988765
Q ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 86168888549987535545544334667666321000110100135432210000010235533278886303101112
Q gi|254780829|r 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 (437)
Q Consensus 155 l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (437)
++.|..+|..... .++.|..-.+.+..| ...+.+.
T Consensus 635 lDdG~LtD~~Gr~-------------------vdF~NtIIImTSNlG-------------------s~~i~~~------- 669 (823)
T CHL00095 635 LDDGRLTDSKGRT-------------------IDFKNTLIIMTSNLG-------------------SKVIEKG------- 669 (823)
T ss_pred CCCCCCCCCCCCE-------------------EECEEEEEEECCCCC-------------------HHHHHHC-------
T ss_conf 1688434899998-------------------843103999716505-------------------5888741-------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 36788875322210022210013576656543321012234320466522112466642024664016754221121255
Q gi|254780829|r 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP 314 (437)
Q Consensus 235 ~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glip 314 (437)
..+..|....+ .........+.+.... ..-+ ..-|.|
T Consensus 670 --------~~~~gf~~~~~------~~~~~~~~~~~~~~~v--------------------~~~l---------~~~F~P 706 (823)
T CHL00095 670 --------GGSLGFKLLED------GTKLDEKQYKRLSNLV--------------------NEEL---------KQYFRP 706 (823)
T ss_pred --------CCCCCCCCCCC------CCCCCHHHHHHHHHHH--------------------HHHH---------HHHCCH
T ss_conf --------34434333445------4322023589999999--------------------9999---------843798
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 43345126886155424678887643468899999999875196899842499999999998404001237246799999
Q gi|254780829|r 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 (437)
Q Consensus 315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E 394 (437)
||++|+.-+++|+||+.+++.+|..- .+...++.++..+++|.+|+.|.+.+++.++. ..+|||.|+.+++
T Consensus 707 EFlnRiDeii~F~~L~~~~l~~Iv~~----~l~~l~~rl~~~~i~l~~~~~a~~~l~~~gy~-----~~~GARpl~R~I~ 777 (823)
T CHL00095 707 EFLNRLDEIIVFRPLTKDEVWEIAEI----MLKELFKRLNNQGIQLEVDERFKTLLAKEGYN-----PLYGARPLRRAIM 777 (823)
T ss_pred HHHHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCC-----CCCCCHHHHHHHH
T ss_conf 78732782786189999999999999----99999999996898599888999999995879-----7768136889999
Q ss_pred HHHHHHHCCC----CCCCCCEEEECH
Q ss_conf 9867762127----568776899859
Q gi|254780829|r 395 RVLEDISFSA----SDLQEKTVVIDA 416 (437)
Q Consensus 395 ~~l~d~~fe~----p~~~~~~v~Id~ 416 (437)
+.+.++.-+. .-..+.++.||-
T Consensus 778 ~~i~~~ls~~il~g~~~~g~~v~v~~ 803 (823)
T CHL00095 778 RLLEDPLAEEVLSFKIKPGDSLVVDV 803 (823)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 99889999999748889969899997
No 16
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.98 E-value=4.4e-31 Score=220.94 Aligned_cols=268 Identities=22% Similarity=0.385 Sum_probs=177.6
Q ss_pred HHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEC
Q ss_conf 99998620304868999999999987788640864444665668-66996798886899999999970---787797143
Q gi|254780829|r 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLA---GAPFIKVEV 86 (437)
Q Consensus 11 ~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l---~VPF~~~da 86 (437)
.+.+.|.+.||||++|.+++|-|++ |-+ .+++++--|- .+||+||||||||+|||+||.++ .-.++..|+
T Consensus 561 ~le~~L~~rViGQd~AI~~v~~aI~----~sr--aGL~dp~rPiGsFLFlGPTGVGKTElAK~LA~~LF~~e~~liriDM 634 (857)
T PRK10865 561 RMEQELHHRVIGQNEAVEAVSNAIR----RSR--AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDM 634 (857)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH----HHH--CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHEEEECC
T ss_conf 9999998785280999999999999----986--3899999973899986898788899999999998389334256253
Q ss_pred CCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 41012-----------1223431013467888765212789985654988886888755553114321100466898898
Q gi|254780829|r 87 TKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155 (437)
Q Consensus 87 T~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 155 (437)
|+|+| .||||.+-+-.+.. .+++.|..++ ..+..++ .+.+..+.++|.+
T Consensus 635 SEy~E~hsVSrLiGaPPGYVGy~eGG~LTe-------aVRr~PySVv----LfDEIEK---------AHpdV~nilLQvl 694 (857)
T PRK10865 635 SEFMEKHSVSRLVGAPPGYVGYEEGGYLTE-------AVRRRPYSVI----LLDEVEK---------AHPDVFNILLQVL 694 (857)
T ss_pred HHHCCCHHHHHHCCCCCCCCCCCCCCCHHH-------HHHHCCCEEE----EEHHHHH---------HCHHHHHHHHHHH
T ss_conf 321130127675589987667577881109-------9981987788----6325766---------3858999999870
Q ss_pred HHCCCCCCEEE-EEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 61688885499-87535545544334667666321000110100135432210000010235533278886303101112
Q gi|254780829|r 156 RDGEISDKEID-IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 (437)
Q Consensus 156 ~~~~~~~~~i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (437)
+.|..+|.... ++-. +....+..+.| .+.+.+
T Consensus 695 D~G~LtD~~Gr~vdF~-------NtIIImTSN~G--------------------------------s~~i~~-------- 727 (857)
T PRK10865 695 DDGRLTDGQGRTVDFR-------NTVVIMTSNLG--------------------------------SDLIQE-------- 727 (857)
T ss_pred CCCEEECCCCCEEEEE-------EEEEEECCCHH--------------------------------HHHHHH--------
T ss_conf 3683207999888513-------34899646233--------------------------------699986--------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 36788875322210022210013576656543321012234320466522112466642024664016754221121255
Q gi|254780829|r 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP 314 (437)
Q Consensus 235 ~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glip 314 (437)
..+ ... .......... -+ .--|.|
T Consensus 728 --------~~~---------------~~~----~~~~~~~~~~--------------------~l---------~~~F~P 751 (857)
T PRK10865 728 --------RFG---------------ELD----YAHMKELVLG--------------------VV---------SHNFRP 751 (857)
T ss_pred --------HCC---------------CCC----HHHHHHHHHH--------------------HH---------HHHCCH
T ss_conf --------506---------------556----6889999999--------------------99---------864798
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 43345126886155424678887643468899999999875196899842499999999998404001237246799999
Q gi|254780829|r 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 (437)
Q Consensus 315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E 394 (437)
||++|+..+++|+||+.+++.+|..- .+...+..++..+++|.++++|.+.|++.++.. .+|||.|+.+++
T Consensus 752 EFlnRiD~iv~F~pL~~~~l~~Iv~~----~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~-----~~GARpl~r~I~ 822 (857)
T PRK10865 752 EFINRIDEVVVFHPLGEQHIASIAQI----QLQRLYKRLEERGYEIHISDEALKLLSENGYDP-----VYGARPLKRAIQ 822 (857)
T ss_pred HHHHCCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCC-----CCCHHHHHHHHH
T ss_conf 88823784898278999999999999----999999999977984998889999999848897-----747137899999
Q ss_pred HHHHHHHCC----CCCCCCCEEEECH
Q ss_conf 986776212----7568776899859
Q gi|254780829|r 395 RVLEDISFS----ASDLQEKTVVIDA 416 (437)
Q Consensus 395 ~~l~d~~fe----~p~~~~~~v~Id~ 416 (437)
+.++++.-+ -.-..+.++.||-
T Consensus 823 ~~i~~~ls~~il~g~~~~g~~i~v~~ 848 (857)
T PRK10865 823 QQIENPLAQQILSGELVPGKVIRLEV 848 (857)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 99889999999728889969899997
No 17
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.98 E-value=1.2e-31 Score=224.71 Aligned_cols=272 Identities=24% Similarity=0.325 Sum_probs=174.6
Q ss_pred HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHH---CCCEEEEE
Q ss_conf 9999986203048689999999999877886408644446656686-6996798886899999999970---78779714
Q gi|254780829|r 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLA---GAPFIKVE 85 (437)
Q Consensus 10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l---~VPF~~~d 85 (437)
..+.+.|.+.||||++|.+++|-||+ |-+ .+++++--|-+ +||+||||||||+|||+||.++ .-.++..|
T Consensus 558 ~~le~~L~~~ViGQ~~Av~~v~~ai~----~sr--aGl~d~~rPigsFLFlGPTGVGKTElAK~LA~~LFg~e~~liR~D 631 (852)
T TIGR03345 558 LSLPDRLAERVIGQDHALEAIAERIR----TAR--AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 86799999997284999999999999----987--179999998568998789987789999999999719861147842
Q ss_pred CCCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 341012-----------122343101346788876521278998565498888688875555311432110046689889
Q gi|254780829|r 86 VTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154 (437)
Q Consensus 86 aT~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (437)
+|+|+| .||||.+-+-.+.. .+++.|..++ ..+..++ .+.+..+.++|.
T Consensus 632 MSEy~E~hsvsrLiGaPPGYVGy~eGG~LTe-------~Vrr~PysVv----LfDEIEK---------AHpdV~nilLQv 691 (852)
T TIGR03345 632 MSEFQEAHTVSRLKGSPPGYVGYGEGGVLTE-------AVRRKPYSVV----LLDEVEK---------AHPDVLELFYQV 691 (852)
T ss_pred CHHHCCHHHHHHHCCCCCCCCCCCCCCHHHH-------HHHHCCCEEE----EECHHHH---------CCHHHHHHHHHH
T ss_conf 2432104368786389997667487772109-------8880998688----8611300---------288999999987
Q ss_pred HHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 86168888549987535545544334667666321000110100135432210000010235533278886303101112
Q gi|254780829|r 155 LRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 (437)
Q Consensus 155 l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (437)
++.+..+|..... .++.|-.-++.+ ++..+......
T Consensus 692 lD~G~LtD~~Gr~-------------------vdF~NtIIImTS-------------------N~Gs~~i~~~~------ 727 (852)
T TIGR03345 692 FDKGVMEDGEGRE-------------------IDFKNTVILLTS-------------------NAGSDLIMALC------ 727 (852)
T ss_pred HCCCEEECCCCCE-------------------EECEEEEEEECC-------------------CHHHHHHHHHH------
T ss_conf 2467775799998-------------------845212999757-------------------24479998640------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 36788875322210022210013576656543321012234320466522112466642024664016754221121255
Q gi|254780829|r 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP 314 (437)
Q Consensus 235 ~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glip 314 (437)
.........+........ .++. -|.|
T Consensus 728 -------------------------~~~~~~~~~~~~~~~v~~----------------------------~l~~-~F~P 753 (852)
T TIGR03345 728 -------------------------ADPETAPDPEALLEALRP----------------------------ELLK-VFKP 753 (852)
T ss_pred -------------------------CCCCCCCCHHHHHHHHHH----------------------------HHHH-HCCH
T ss_conf -------------------------376555668999999999----------------------------9983-4798
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 43345126886155424678887643468899999999875-19689984249999999999840400123724679999
Q gi|254780829|r 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKT-EGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 (437)
Q Consensus 315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~-~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~ 393 (437)
||++|+ -+++++||+.+++.+|..- .+......++. .+++|.+|+.|++.|++..+. ..+|||.|+.++
T Consensus 754 EFlnRi-~ii~F~~L~~~~l~~Iv~~----~l~~l~~rL~~~~~i~l~~~~~~~~~l~~~g~~-----~~~GARpl~r~I 823 (852)
T TIGR03345 754 AFLGRM-TVIPYLPLDDDVLAAIVRL----KLDRIARRLKENHGAELVYSEALVEHIVARCTE-----VESGARNIDAIL 823 (852)
T ss_pred HHHCCE-EEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCC-----CCCCCCHHHHHH
T ss_conf 886456-6897368999999999999----999999999862896899889999999982899-----776864389999
Q ss_pred HHHHHHHHCC------CCCCCCCEEEEC
Q ss_conf 9986776212------756877689985
Q gi|254780829|r 394 ERVLEDISFS------ASDLQEKTVVID 415 (437)
Q Consensus 394 E~~l~d~~fe------~p~~~~~~v~Id 415 (437)
++.+.++.-+ .++..+++|.+|
T Consensus 824 ~~~i~~~la~~iL~~~~~g~~~~~i~~~ 851 (852)
T TIGR03345 824 NQTLLPELSRQILERLAAGEPIERIHLD 851 (852)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9998899999999987089972488815
No 18
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.6e-31 Score=221.54 Aligned_cols=275 Identities=24% Similarity=0.355 Sum_probs=181.1
Q ss_pred HHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHC---CCEEEE
Q ss_conf 8999998620304868999999999987788640864444665668-669967988868999999999707---877971
Q gi|254780829|r 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAG---APFIKV 84 (437)
Q Consensus 9 P~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l~---VPF~~~ 84 (437)
-..+-+.|.+.|||||+|.+++|-|| ||-+. ++.++--|- .+||+||||||||+|||+||.++- -+++..
T Consensus 482 ll~le~~L~~rViGQd~AV~~v~~aI----rraRa--GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~ 555 (786)
T COG0542 482 LLNLERRLKKRVIGQDEAVEAVSDAI----RRARA--GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI 555 (786)
T ss_pred HHHHHHHHHCCEECHHHHHHHHHHHH----HHHHC--CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 98679997365017399999999999----99856--9999998735788667886569999999999965997444554
Q ss_pred ECCCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 4341012-----------12234310134678887652127899856549888868887555531143211004668988
Q gi|254780829|r 85 EVTKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRK 153 (437)
Q Consensus 85 daT~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (437)
|+|+|.| .||||.+.+-.+... +++.|..+ +..+..++ .+.+..+.++|
T Consensus 556 DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEa-------VRr~PySV----iLlDEIEK---------AHpdV~nilLQ 615 (786)
T COG0542 556 DMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEA-------VRRKPYSV----ILLDEIEK---------AHPDVFNLLLQ 615 (786)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHH-------HHCCCCEE----EEECHHHH---------CCHHHHHHHHH
T ss_conf 568777787799872799987200655400376-------60699868----88412644---------08899999999
Q ss_pred HHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 98616888854998753554554433466766632100011010013543221000001023553327888630310111
Q gi|254780829|r 154 KLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTV 233 (437)
Q Consensus 154 ~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 233 (437)
.+++|.++|.+... .++.+..-++.+..| .....+..
T Consensus 616 VlDdGrLTD~~Gr~-------------------VdFrNtiIImTSN~G-------------------s~~i~~~~----- 652 (786)
T COG0542 616 VLDDGRLTDGQGRT-------------------VDFRNTIIIMTSNAG-------------------SEEILRDA----- 652 (786)
T ss_pred HHCCCCEECCCCCE-------------------EECCEEEEEEECCCC-------------------HHHHHHHC-----
T ss_conf 84678055489988-------------------843002899845026-------------------59897531-----
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 23678887532221002221001357665654332101223432046652211246664202466401675422112125
Q gi|254780829|r 234 HRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLL 313 (437)
Q Consensus 234 ~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~gli 313 (437)
+ . ......+...... ...+ .-.|.
T Consensus 653 -----------~--------------~--~~~~~~~~~~~~v--------------------~~~l---------~~~F~ 676 (786)
T COG0542 653 -----------D--------------G--DDFADKEALKEAV--------------------MEEL---------KKHFR 676 (786)
T ss_pred -----------C--------------C--CCCCHHHHHHHHH--------------------HHHH---------HHHCC
T ss_conf -----------3--------------4--3210046788999--------------------9999---------85389
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 54334512688615542467888764346889999999987519689984249999999999840400123724679999
Q gi|254780829|r 314 PEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVM 393 (437)
Q Consensus 314 pE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~ 393 (437)
|||++|+.-++++++|+++++.+|... ++.+....+...++.|++|++|...|++..+. ..+|||+|+.++
T Consensus 677 PEFLNRid~II~F~~L~~~~l~~Iv~~----~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd-----~~~GARpL~R~I 747 (786)
T COG0542 677 PEFLNRIDEIIPFNPLSKEVLERIVDL----QLNRLAKRLAERGITLELSDEAKDFLAEKGYD-----PEYGARPLRRAI 747 (786)
T ss_pred HHHHHHCCCEEECCCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCC-----CCCCCHHHHHHH
T ss_conf 989851261785067998999999999----99999999986895599888999999996468-----776736799999
Q ss_pred HHHHHHHHCC----CCCCCCCEEEECHH
Q ss_conf 9986776212----75687768998599
Q gi|254780829|r 394 ERVLEDISFS----ASDLQEKTVVIDAE 417 (437)
Q Consensus 394 E~~l~d~~fe----~p~~~~~~v~Id~~ 417 (437)
++-++++.-+ ..-.++.++.|+.+
T Consensus 748 q~~i~~~La~~iL~~~~~~~~~v~v~~~ 775 (786)
T COG0542 748 QQEIEDPLADEILFGKIEDGGTVKVDVD 775 (786)
T ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf 9999899999998466579967999951
No 19
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.97 E-value=1.4e-30 Score=217.67 Aligned_cols=268 Identities=24% Similarity=0.395 Sum_probs=178.2
Q ss_pred HHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEC
Q ss_conf 99998620304868999999999987788640864444665668-66996798886899999999970---787797143
Q gi|254780829|r 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLA---GAPFIKVEV 86 (437)
Q Consensus 11 ~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l---~VPF~~~da 86 (437)
.+.+.|.+.||||++|.+++|-||+ |-+ .+++++--|- .+||+||||||||+|||+||+++ .-.++..|+
T Consensus 558 ~Le~~L~~rViGQd~AI~~I~~aI~----~sr--aGL~dp~rP~GsFlf~GptGvGKTELAKaLAe~Lfg~~~~LIriDM 631 (852)
T TIGR03346 558 HMEEVLHERVVGQDEAVEAVSDAIR----RSR--AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDM 631 (852)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf 7888899897170999999999999----997--1888899974589986788776899999999998558520698430
Q ss_pred CCEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 41012-----------1223431013467888765212789985654988886888755553114321100466898898
Q gi|254780829|r 87 TKFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKL 155 (437)
Q Consensus 87 T~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 155 (437)
|+|+| .||||.+-+-.+..- +++.|..++ ..+..++ .+.+..+.++|.+
T Consensus 632 SEy~E~hsvsrLiGaPPGYVGy~egG~Lte~-------vr~~PysVv----L~DEIEK---------Ah~~V~~~lLQil 691 (852)
T TIGR03346 632 SEYMEKHSVARLIGAPPGYVGYEEGGQLTEA-------VRRKPYSVV----LFDEVEK---------AHPDVFNVLLQVL 691 (852)
T ss_pred HHHCCHHHHHHHCCCCCCCCCCCCCCEECHH-------HHHCCCEEE----EECCHHH---------HCHHHHHHHHHHH
T ss_conf 4430122477855899976776878742398-------981988799----8530543---------0768999999882
Q ss_pred HHCCCCCCEEE-EEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 61688885499-87535545544334667666321000110100135432210000010235533278886303101112
Q gi|254780829|r 156 RDGEISDKEID-IEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVH 234 (437)
Q Consensus 156 ~~~~~~~~~i~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 234 (437)
+.|..+|.... ++ +.|-.-.+.. ++....+....
T Consensus 692 D~G~ltD~~Gr~vd--------------------F~NtiiimTS-------------------N~Ga~~i~~~~------ 726 (852)
T TIGR03346 692 DDGRLTDGQGRTVD--------------------FRNTVIIMTS-------------------NLGSQFIQELA------ 726 (852)
T ss_pred CCCEEECCCCCEEE--------------------EEEEEEEEEC-------------------CCCHHHHHHHC------
T ss_conf 36743079998885--------------------3556898615-------------------40659997411------
Q ss_pred HHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
Q ss_conf 36788875322210022210013576656543321012234320466522112466642024664016754221121255
Q gi|254780829|r 235 RDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLP 314 (437)
Q Consensus 235 ~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glip 314 (437)
.....+......... + .--|.|
T Consensus 727 -----------------------------~~~~~~~~~~~~~~~--------------------~---------~~~F~P 748 (852)
T TIGR03346 727 -----------------------------GGDDYEEMREAVMEV--------------------L---------RAHFRP 748 (852)
T ss_pred -----------------------------CCCCHHHHHHHHHHH--------------------H---------HHHCCH
T ss_conf -----------------------------455579999999999--------------------9---------965899
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 43345126886155424678887643468899999999875196899842499999999998404001237246799999
Q gi|254780829|r 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 (437)
Q Consensus 315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E 394 (437)
||++|+..+++|+||+.+++.+|... .+....+.++..++++.+++.+.+.|++.++.. ++|||.|+.+++
T Consensus 749 EflnRid~ii~F~~L~~~~l~~I~~~----~l~~l~~~l~~~~i~l~~~~~~~~~l~~~g~~~-----~~GAR~l~r~i~ 819 (852)
T TIGR03346 749 EFLNRIDEIVVFHPLGREQIARIVEI----QLGRLRKRLAERKITLELSDAALDFLAEAGYDP-----VYGARPLKRAIQ 819 (852)
T ss_pred HHHHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCC-----CCCHHHHHHHHH
T ss_conf 89963786898378999999999999----999999999977984998889999999848897-----747156999999
Q ss_pred HHHHHHHCCC----CCCCCCEEEECH
Q ss_conf 9867762127----568776899859
Q gi|254780829|r 395 RVLEDISFSA----SDLQEKTVVIDA 416 (437)
Q Consensus 395 ~~l~d~~fe~----p~~~~~~v~Id~ 416 (437)
+.+.++.-+. .-..+.+|.||-
T Consensus 820 ~~i~~~la~~iL~g~~~~g~~v~v~~ 845 (852)
T TIGR03346 820 REIENPLAKKILAGEVADGDTIVVDV 845 (852)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEE
T ss_conf 99889999999748889959899997
No 20
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.97 E-value=7.3e-31 Score=219.54 Aligned_cols=270 Identities=21% Similarity=0.374 Sum_probs=179.2
Q ss_pred HHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 899999862030486899999999998778864086444466566-8669967988868999999999707877971434
Q gi|254780829|r 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87 (437)
Q Consensus 9 P~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~p-sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT 87 (437)
-..+.+.|.+.||||++|..++|-|++ |-+ .+++++--| ..+||+||||||||+|||+||+.++.+++..|+|
T Consensus 449 l~~le~~l~~~viGQ~~Ai~~v~~ai~----~~r--aGL~~~~rPigsFlf~GPTGVGKTElak~LA~~L~~~lir~DMS 522 (758)
T PRK11034 449 LKNLGDRLKMLVFGQDKAIEALTEAIK----MSR--AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMS 522 (758)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHH----HHH--CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 998999987787454999999999999----986--38889999705899978998777999999999986677214266
Q ss_pred CEEE-----------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 1012-----------12234310134678887652127899856549888868887555531143211004668988986
Q gi|254780829|r 88 KFTE-----------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156 (437)
Q Consensus 88 ~ftE-----------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (437)
+|.| .||||-+-+-.+.. .+++.|..++ ..+..++ .+.+..+.++|.++
T Consensus 523 Ey~e~hsvsrLiGaPPGYVGy~eGG~Lte-------~Vr~~PysVv----L~DEIEK---------AhpdV~nilLQvlD 582 (758)
T PRK11034 523 EYMERHTVSRLIGAPPGYVGFDQGGLLTD-------AVIKHPHAVL----LLDEIEK---------AHPDVFNLLLQVMD 582 (758)
T ss_pred HHCCHHHHHHHCCCCCCCCCCCCCCCCCH-------HHHHCCCEEE----EEHHHHH---------HCHHHHHHHHHHCC
T ss_conf 53120147774489986667677770128-------7873987799----7336756---------39899998873237
Q ss_pred HCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 16888854998753554554433466766632100011010013543221000001023553327888630310111236
Q gi|254780829|r 157 DGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236 (437)
Q Consensus 157 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 236 (437)
.+.++|.+... .++.|..-.+.+..| + ...
T Consensus 583 ~G~LtD~~Gr~-------------------vdF~NtiIImTSN~G-------------a------~~~------------ 612 (758)
T PRK11034 583 NGTLTDNNGRK-------------------ADFRNVVLVMTTNAG-------------V------RET------------ 612 (758)
T ss_pred CCCCCCCCCCE-------------------EECEEEEEEEECCCC-------------H------HHH------------
T ss_conf 78301799998-------------------844001999825617-------------4------878------------
Q ss_pred HHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 78887532221002221001357665654332101223432046652211246664202466401675422112125543
Q gi|254780829|r 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEI 316 (437)
Q Consensus 237 a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~ 316 (437)
....++|.. .....+.. .-+ + --|.|||
T Consensus 613 -----~~~~~gf~~------------------~~~~~~~~--------------------~~l--------~-~~F~PEF 640 (758)
T PRK11034 613 -----ERKSIGLIH------------------QDNSTDAM--------------------EEI--------K-KIFTPEF 640 (758)
T ss_pred -----HHHCCCCCC------------------CCCHHHHH--------------------HHH--------H-HHCCHHH
T ss_conf -----642147554------------------20359999--------------------999--------9-5479867
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 34512688615542467888764346889999999987519689984249999999999840400123724679999998
Q gi|254780829|r 317 QGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERV 396 (437)
Q Consensus 317 ~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~ 396 (437)
.+|+..+++++||+.+++.+|... .+.+.++.++..+++|.+|+.|.+.+++..+.. .+|||+|+.++++.
T Consensus 641 lNRiD~ii~F~~L~~~~l~~Iv~~----~l~~l~~rL~~~~i~l~~~~~a~~~l~~~gyd~-----~~GARpl~R~I~~~ 711 (758)
T PRK11034 641 RNRLDNIIWFDHLSTDVIHQVVDK----FIVELQAQLDQKGVSLEVSQEARDWLAEKGYDR-----AMGARPMARVIQDN 711 (758)
T ss_pred HHHCCEEEEECCCCHHHHHHHHHH----HHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCC-----CCCCCHHHHHHHHH
T ss_conf 723674786388999999999999----999999999978985998899999999848894-----53711288999999
Q ss_pred HHHHHCCC----CCCCCCEEEEC
Q ss_conf 67762127----56877689985
Q gi|254780829|r 397 LEDISFSA----SDLQEKTVVID 415 (437)
Q Consensus 397 l~d~~fe~----p~~~~~~v~Id 415 (437)
+.++.-+. .-.++.+|.||
T Consensus 712 i~~~La~~il~g~~~~g~~v~v~ 734 (758)
T PRK11034 712 LKKPLANELLFGSLVDGGQVTVA 734 (758)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 88999999972988898989999
No 21
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.93 E-value=3.2e-26 Score=189.40 Aligned_cols=246 Identities=15% Similarity=0.083 Sum_probs=175.1
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970787797143410121223431
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~D 98 (437)
-|-|.|++|+.+--||---.++-.+-.... --.|+||||.||||||||+|||++|+++++||+.++++++... |+|+.
T Consensus 133 dIGGl~~~k~el~E~velPl~~pe~f~~~G-i~pPkGvLLyGPPGtGKTllAkAvA~e~~~~fi~v~~s~l~sk-~vGes 210 (390)
T PRK03992 133 DIGGLDEQIREVREAVELPLKNPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK-FIGEG 210 (390)
T ss_pred HHCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHC-CCCHH
T ss_conf 614989999999999999865989999769-9999727868989997899999999874888799667997524-54179
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf 01346788876521278998565498888688875555311432110046689889861688885499875355455443
Q gi|254780829|r 99 VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISN 178 (437)
Q Consensus 99 Ves~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~ 178 (437)
...+.+.|..+.+.+||.+|+++++..+.+|......+.........+++.+++........+.+..++++..+++
T Consensus 211 ----ek~vr~lF~~Ar~~aP~IiFiDEiDai~~~R~~~~~~g~~ev~r~l~qLL~emDG~~~~~~V~VIaATNrpd~LDp 286 (390)
T PRK03992 211 ----ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRPDILDP 286 (390)
T ss_pred ----HHHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCHHCCH
T ss_conf ----9999999999997099089714325663356778886208899999999997448777788279960698100597
Q ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCC
Q ss_conf 34667666321000110100135432210000010235533278886303101112367888753222100222100135
Q gi|254780829|r 179 FDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR 258 (437)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~ 258 (437)
.. .++++++..+....|....+......+.........++.....+.+.+.++++....+.++.-.+.+...+.|...
T Consensus 287 Al--lRpGRFDr~I~iplPd~~~R~~Ilki~~~~~~l~~dvdl~~lA~~T~G~SGADI~~lc~EA~m~Air~~r~~i~~~ 364 (390)
T PRK03992 287 AL--LRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEVTME 364 (390)
T ss_pred HH--HCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 77--5477652388708949999999999984799999888999999768799899999999999999998589860899
Q ss_pred CCCCCCCCCCCCHH
Q ss_conf 76656543321012
Q gi|254780829|r 259 DSGNGIGVSREGVQ 272 (437)
Q Consensus 259 ~~~~~~~~~~~g~~ 272 (437)
++..+.........
T Consensus 365 Df~~Ai~kv~~~~~ 378 (390)
T PRK03992 365 DFLKAIEKVMGKEE 378 (390)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999967865
No 22
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.2e-26 Score=189.44 Aligned_cols=211 Identities=15% Similarity=0.085 Sum_probs=172.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~ 131 (437)
.||||||+|||||||||||||+|...++-|+.+.||+|.|. |+|+ +.+-+++.|..+.++|+++||++++++.+.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK-YiGE----GaRlVRelF~lArekaPsIIFiDEIDAIg~ 258 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK-YIGE----GARLVRELFELAREKAPSIIFIDEIDAIGA 258 (406)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHH-HHCC----CHHHHHHHHHHHHHCCCEEEEEECHHHHHC
T ss_conf 99712766899975889999987205866999421999999-8341----169999999987414984999831122311
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf 75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 (437)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
+|.....+|..+-..+.-+++.+|++++.-++.-.|..+++.+.++++ ..++++.++.+-...+...++.....++-.
T Consensus 259 kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPA--LLRPGR~DRkIEfplPd~~gR~~Il~IHtr 336 (406)
T COG1222 259 KRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPA--LLRPGRFDRKIEFPLPDEEGRAEILKIHTR 336 (406)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH--HCCCCCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 113688885099999999999860588978876899855885555766--508875453011689897899999998762
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCC
Q ss_conf 1023553327888630310111236788875322210022210013576656543321
Q gi|254780829|r 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVSRE 269 (437)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~ 269 (437)
........+.+.+.+.+++.++++....+.|+--.|.++..+.+.+.++..+.+....
T Consensus 337 kM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 337 KMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred HCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHH
T ss_conf 1467667699999875389956779999998759999860473339999999999972
No 23
>TIGR01242 26Sp45 26S proteasome subunit P45 family; InterPro: IPR005937 Intracellular proteins, including short-lived proteins such as cyclin, Mos, Myc, p53, NF-kappaB, and IkappaB, are degraded by the ubiquitin-proteasome system. The 26S proteasome (a 2 MDa complex) is made up of two subcomplexes: the 20S proteasome and the regulatory complex. The former is a 700 kDa cylindrical protease complex consisting of four stacks of heptameric rings with 28 subunits (i.e., 7777) with molecular masses of about 20-35 kDa, whereas the latter is a 700-1000 kDa complex consisting of at least 18 subunits with molecular masses of 28-110 kDa, including 6 putative ATPases (Rpt1-Rpt6) and 12 non-ATPase subunits (Rpn1-12). Members of the 26S proteasome subunit P45 family: ATPase p45/Sug1/Rpt6 may be phosphorylated within the proteasome. This phosphorylation event may play a key role in ATP-dependent proteolysis because a good correlation exists between the inhibition pattern of protein kinase inhibitors against the phosphorylation of p45 and that against the ATP-dependent proteolytic activity , . More information about these protein can be found at Protein of the Month: AAA ATPases .; GO: 0016787 hydrolase activity, 0030163 protein catabolic process, 0005634 nucleus, 0005737 cytoplasm.
Probab=99.92 E-value=1.3e-25 Score=185.55 Aligned_cols=207 Identities=16% Similarity=0.108 Sum_probs=174.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~ 131 (437)
.||||||.|||||||||||||+|.+.++-|+.+=||+|..- |+| -+++-+.+.|.-+.++||.++|++++++.+.
T Consensus 155 PPKGvLLyGPPGtGKTLlAKAvA~et~ATFIrvVgSElV~K-yIG----EGArLV~~~F~LAkEKaPsIiFIDEiDAiaa 229 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK-YIG----EGARLVREVFELAKEKAPSIIFIDEIDAIAA 229 (364)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEEHHHHHHH-HHC----CHHHHHHHHHHHHHCCCCCEEEEECHHHHHH
T ss_conf 89865700757976889999863145512688604444444-413----3168999999985306981686101333543
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf 75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 (437)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
+|....-+|..+-..+.-+++++|++++.-++.-.|..+|+.+.+++. ..+++++++-+-...|...|+.....+|-.
T Consensus 230 kR~~~~TsGdREV~RTlmQLLAElDGFd~rg~VkviaATNR~DilDPA--~LRPGRFDR~IEVPlP~~~GR~eIlkiHTr 307 (364)
T TIGR01242 230 KRVDSSTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPA--ILRPGRFDRIIEVPLPDFEGRLEILKIHTR 307 (364)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHCCCC--CCCCCCCCCEEECCCCCCCCHHHHHHHHHC
T ss_conf 211467787315788999999752488876761688720762020432--148886132573169783220566555210
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCC
Q ss_conf 102355332788863031011123678887532221002221001357665654
Q gi|254780829|r 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIG 265 (437)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~ 265 (437)
........+...+++++.+.++++.-..+.|+--.|.+...+.+++.++..+.+
T Consensus 308 ~~~la~dVdl~~~A~~TeG~sGAdlKAi~tEAG~~AIR~~r~~vT~~Df~kAv~ 361 (364)
T TIGR01242 308 KMKLAEDVDLEAIAKLTEGASGADLKAICTEAGMFAIREERDYVTMDDFLKAVE 361 (364)
T ss_pred CCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 000123568799998747886630423434620477774456766999999987
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.84 E-value=2.3e-21 Score=157.87 Aligned_cols=159 Identities=25% Similarity=0.375 Sum_probs=121.6
Q ss_pred CHHHHHHH------HHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 88999998------620304868999999999987788640864444665668669967988868999999999707877
Q gi|254780829|r 8 SPREIVSE------LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81 (437)
Q Consensus 8 tP~~i~~~------Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF 81 (437)
||+++-.. || -||||++||+.-.+-+ .| ...+... .+--|+|||+.||||||||++||+||.+++|||
T Consensus 106 ~~~~~~~e~~~~it~d-dViGqEeAK~kcrli~--~y--LenPe~F-g~WAPknVLFyGppGTGKTm~Akalane~kvp~ 179 (368)
T COG1223 106 TPREEDREIISDITLD-DVIGQEEAKRKCRLIM--EY--LENPERF-GDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL 179 (368)
T ss_pred CCCHHHHHHHCCCCHH-HHHCHHHHHHHHHHHH--HH--HHCHHHH-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCE
T ss_conf 7514555661366176-6416398888879999--99--6496876-345754168778999648799998725457854
Q ss_pred EEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 97143410121223431013467888765212789985654988886888755553114321100466898898616888
Q gi|254780829|r 82 IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEIS 161 (437)
Q Consensus 82 ~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (437)
..+-||++. |+-|+.+..++.++...+.+.|+|.+|+++.++.+.+|-.+.+.|.. .+..+.++..|+.....
T Consensus 180 l~vkat~li-----GehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDV--sEiVNALLTelDgi~en 252 (368)
T COG1223 180 LLVKATELI-----GEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDV--SEIVNALLTELDGIKEN 252 (368)
T ss_pred EEECHHHHH-----HHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHCCCCCCC
T ss_conf 871168888-----87743598999999998875198499840024555304578864549--99999999850174457
Q ss_pred CCEEEEEECCCCCCCCCC
Q ss_conf 854998753554554433
Q gi|254780829|r 162 DKEIDIEVADTSSDISNF 179 (437)
Q Consensus 162 ~~~i~i~~~~~~~~~~~~ 179 (437)
+..+.|..++.+..+++.
T Consensus 253 eGVvtIaaTN~p~~LD~a 270 (368)
T COG1223 253 EGVVTIAATNRPELLDPA 270 (368)
T ss_pred CCEEEEEECCCHHHCCHH
T ss_conf 756999505984650788
No 25
>KOG1051 consensus
Probab=99.83 E-value=2e-20 Score=151.88 Aligned_cols=284 Identities=22% Similarity=0.259 Sum_probs=162.9
Q ss_pred HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEC
Q ss_conf 99999862030486899999999998778864086444466566866996798886899999999970---787797143
Q gi|254780829|r 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEV 86 (437)
Q Consensus 10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~da 86 (437)
..+.+.|.+.|+||++|-+++|-||+ +...+++++....-+|++||+|+|||.|||+||.++ .--|+.+|.
T Consensus 554 ~~L~~~L~~~V~gQ~eAv~aIa~AI~------~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDm 627 (898)
T KOG1051 554 KKLEERLHERVIGQDEAVAAIAAAIR------RSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDM 627 (898)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH------HCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECH
T ss_conf 99999997544663778999999998------432035788888589997888413899999999997288642689614
Q ss_pred CCEEE--------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 41012--------1223431013467888765212789985654988886888755553114321100466898898616
Q gi|254780829|r 87 TKFTE--------IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158 (437)
Q Consensus 87 T~ftE--------~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (437)
++|.| .||||.....-+. ..+++.|...+- ++.+++ .+....+.+.+.++.|
T Consensus 628 se~~evskligsp~gyvG~e~gg~Lt-------eavrrrP~sVvL---fdeIEk----------Ah~~v~n~llq~lD~G 687 (898)
T KOG1051 628 SEFQEVSKLIGSPPGYVGKEEGGQLT-------EAVKRRPYSVVL---FEEIEK----------AHPDVLNILLQLLDRG 687 (898)
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHH-------HHHHCCCCEEEE---EECHHH----------CCHHHHHHHHHHHHCC
T ss_conf 55555653048995554630577888-------997169965999---830222----------2888999999998627
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 88885499875355455443346676663210001101001354322100000102355332788863031011123678
Q gi|254780829|r 159 EISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSI 238 (437)
Q Consensus 159 ~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~ 238 (437)
..+|.... ..++.+...++....+.........
T Consensus 688 rltDs~Gr-------------------~Vd~kN~I~IMTsn~~~~~i~~~~~---------------------------- 720 (898)
T KOG1051 688 RLTDSHGR-------------------EVDFKNAIFIMTSNVGSSAIANDAS---------------------------- 720 (898)
T ss_pred CCCCCCCC-------------------EEECCCEEEEEECCCCHHHHHCCCC----------------------------
T ss_conf 40058886-------------------7504645999942631666640454----------------------------
Q ss_pred HHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 88753222100222100135766565433210122343204665221124666420246640167542211212554334
Q gi|254780829|r 239 QMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQG 318 (437)
Q Consensus 239 ~~~~~~~~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~G 318 (437)
...+.. ..+. ..+..+.....+..... .|. ++-+.|||.+
T Consensus 721 ------~~~~l~------~~~~-------~~~~~~~~k~~v~~~~~--~~~-------------------~~~~r~Ef~n 760 (898)
T KOG1051 721 ------LEEKLL------DMDE-------KRGSYRLKKVQVSDAVR--IYN-------------------KQFFRKEFLN 760 (898)
T ss_pred ------CCCCCC------CCHH-------HHHHHHHHHHHHHHHHH--CCC-------------------CCCCCHHHHC
T ss_conf ------100012------3100-------01233201333334320--135-------------------6556867855
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 51268861554246788876434688999999998751968998424999999999984040012372467999999867
Q gi|254780829|r 319 RFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLE 398 (437)
Q Consensus 319 R~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~ 398 (437)
|+..+..+.+|+.+++.+|..-+-...-.+ ++..++.+.+++.+...++...+. .++|||.++..+++.+.
T Consensus 761 rid~i~lf~~l~~~~~~~i~~~~~~e~~~r----~~~~~~~~~v~~~~~~~v~~~~~d-----~~ygAr~ikr~i~~~~~ 831 (898)
T KOG1051 761 RIDELDLNLPLDRDELIEIVNKQLTEIEKR----LEERELLLLVTDRVDDKVLFKGYD-----FDYGARPIKRSIEERFE 831 (898)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHH
T ss_conf 554055414255566665556677888877----666679999889997665305768-----47776689999999988
Q ss_pred HHH-----CCCCCCCCCEEEECHH
Q ss_conf 762-----1275687768998599
Q gi|254780829|r 399 DIS-----FSASDLQEKTVVIDAE 417 (437)
Q Consensus 399 d~~-----fe~p~~~~~~v~Id~~ 417 (437)
+.+ ++..+ ...+.|+.+
T Consensus 832 ~~la~~~l~ei~~--~~~~~i~~~ 853 (898)
T KOG1051 832 NRLAEALLGEVED--GLTERILVA 853 (898)
T ss_pred HHHHHHHEEEECC--CCEEEEEEC
T ss_conf 7776531143268--856999742
No 26
>KOG0730 consensus
Probab=99.82 E-value=1.6e-20 Score=152.50 Aligned_cols=218 Identities=17% Similarity=0.097 Sum_probs=159.0
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCC-----CCCC-CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf 3048689999999999877886408644-----4466-566866996798886899999999970787797143410121
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPAD-----LRDE-LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~-----~~~e-~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~ 92 (437)
-|=|||+-|+.+..+|- ++.. .|-. -.|++|||.||||||||++||++|.+++.+|+++.|.++--+
T Consensus 435 dIGGlE~lK~elq~~V~-------~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk 507 (693)
T KOG0730 435 DIGGLEELKRELQQAVE-------WPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK 507 (693)
T ss_pred HCCCHHHHHHHHHHHHH-------HHHHCHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCHHHHHH
T ss_conf 04578999999999986-------16656599987257887547777899862478999986463587264157899877
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 22343101346788876521278998565498888688875555311432110046689889861688885499875355
Q gi|254780829|r 93 GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADT 172 (437)
Q Consensus 93 gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~ 172 (437)
|||+.- .-+++.|..+...++|.+|.++++.....|..... .-.....++++.+|++++...+.+.+..+++
T Consensus 508 -~vGeSE----r~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~k~V~ViAATNR 579 (693)
T KOG0730 508 -YVGESE----RAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEALKNVLVIAATNR 579 (693)
T ss_pred -HCCCHH----HHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCC---CHHHHHHHHHHHHCCCCCCCCCEEEEECCCC
T ss_conf -518258----99999999986269837744666666630478755---1489999999987004101470899950588
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 45544334667666321000110100135432210000010235533278886303101112367888753222100222
Q gi|254780829|r 173 SSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252 (437)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~ 252 (437)
+...+... .++++.+.-+....+....+............--..++...+...+.++++++....+.+++..++...+
T Consensus 580 pd~ID~AL--lRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i 657 (693)
T KOG0730 580 PDMIDPAL--LRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESI 657 (693)
T ss_pred HHHCCHHH--CCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 10126977--5986533057515834788999999997339998655699999985467738999999999999998752
Q ss_pred C
Q ss_conf 1
Q gi|254780829|r 253 D 253 (437)
Q Consensus 253 ~ 253 (437)
+
T Consensus 658 ~ 658 (693)
T KOG0730 658 E 658 (693)
T ss_pred C
T ss_conf 6
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.79 E-value=1.7e-19 Score=145.77 Aligned_cols=189 Identities=13% Similarity=0.033 Sum_probs=121.7
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56686699679888689999999997078779714341012122343101346788876521278998565498888688
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~ 130 (437)
..|+||||+||||||||++||++|++.++||+.+|++++... ||| ..-.++++++..+...+||.+++++++.-.
T Consensus 257 ~~PkGvLL~GpPG~GKtl~AKAvA~e~~~p~l~l~~~~l~~~-~vG----esE~~~r~~f~~A~~~aP~ilfiDEidk~~ 331 (491)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANEWNLPLLRLDVGKLFGG-IVG----ESESRMRQMIQLAETISPCILWIDEIDKAF 331 (491)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEHHHHHHH-HCC----HHHHHHHHHHHHHHHHCCEEEEEEHHHHHC
T ss_conf 999879997999987899999998663894699667997560-067----049999999999986198589974654542
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEE
Q ss_conf 87555531143211004668988986168888549987535545544334667666321000110100135432210000
Q gi|254780829|r 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 (437)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (437)
..+.. ....+......++++..+. +.......+..+++...+++ ...++++++..+-...|....+......+.
T Consensus 332 ~~~~~--~~d~g~s~rv~~~~Lt~m~--e~~~~VfViattN~~~~L~p--ellR~GRFD~~~~v~lP~~~~R~~I~~ihl 405 (491)
T CHL00195 332 SGLDS--KGDSGTSNRVLATFITWLS--EKKSPVFVVATANNIDSLPL--ELLRKGRFDEIFFLDLPNLEERELIFKIHL 405 (491)
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHC--CCCCCEEEEEECCCCCCCCH--HHCCCCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 58888--8887232899999999864--68997699995899755898--770898777047648959899999999998
Q ss_pred EH--HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 01--02355332788863031011123678887532221002
Q gi|254780829|r 211 SV--QKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250 (437)
Q Consensus 211 ~~--~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~ 250 (437)
.. ......++.....+.+.++++++....+.++...+|..
T Consensus 406 ~~~~~~~~~~~d~~~la~~t~gfsGAeIe~~v~~A~~~A~~~ 447 (491)
T CHL00195 406 KRFRPNSWQNYDIEILSQLTNKFSGAEIEQSIIEAMHHAFSE 447 (491)
T ss_pred HCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 544788755469999997685988899999999999999875
No 28
>KOG0733 consensus
Probab=99.77 E-value=3.2e-19 Score=144.06 Aligned_cols=193 Identities=12% Similarity=0.059 Sum_probs=131.7
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56686699679888689999999997078779714341012122343101346788876521278998565498888688
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~ 130 (437)
..|+||||-||||||||.||+|+|++++|||++++||+.. -||-|+.-+ ++++.|..+...++|.+|++++++..
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv-SGvSGESEk----kiRelF~~A~~~aPcivFiDeIDAI~ 295 (802)
T KOG0733 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV-SGVSGESEK----KIRELFDQAKSNAPCIVFIDEIDAIT 295 (802)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHH-CCCCCCCHH----HHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 7997516448998647899999752128854851414653-155752289----99999998736697599851100136
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC----CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 8755553114321100466898898616888----854998753554554433466766632100011010013543221
Q gi|254780829|r 131 EERILDALVGKTATSNTREVFRKKLRDGEIS----DKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK 206 (437)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (437)
-+|-.. ...+ ...-..+++..|++.... +.+++|..+++++.+++.. ++++++++.|--+.+....+....
T Consensus 296 pkRe~a-qreM--ErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaL--RRaGRFdrEI~l~vP~e~aR~~IL 370 (802)
T KOG0733 296 PKREEA-QREM--ERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPAL--RRAGRFDREICLGVPSETAREEIL 370 (802)
T ss_pred CCHHHH-HHHH--HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHH--HCCCCCCCEEEECCCCHHHHHHHH
T ss_conf 440457-8899--99999999985100256666899769982478976558777--325655323530689668899999
Q ss_pred EEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 00000102355332788863031011123678887532221002221
Q gi|254780829|r 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFD 253 (437)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ 253 (437)
...-....--..++...++++++++-+++.-..+.++...+.-.-.+
T Consensus 371 ~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld 417 (802)
T KOG0733 371 RIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILD 417 (802)
T ss_pred HHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986277787768999975188752141999999999999999862
No 29
>KOG0733 consensus
Probab=99.75 E-value=5.9e-19 Score=142.29 Aligned_cols=192 Identities=17% Similarity=0.072 Sum_probs=129.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~ 131 (437)
.|+||||.|||||||||||||+|.+++..|+++-|.++.-+ |||+.-- -+++.|..+...|+|.||+++++...-
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk-YVGESEr----AVR~vFqRAR~saPCVIFFDEiDaL~p 618 (802)
T KOG0733 544 APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK-YVGESER----AVRQVFQRARASAPCVIFFDEIDALVP 618 (802)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHH-HHHHHHH----HHHHHHHHHHCCCCEEEEECCHHHCCC
T ss_conf 98723875799861889999985030475476238899987-7423789----999999986238983898511120276
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf 75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 (437)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
.|.... ........++++.+|++.+.-..+-.+..+++++..++.. .++++.+.-....++....+....+....
T Consensus 619 ~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAi--LRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733 619 RRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAI--LRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred CCCCCC---CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHH--CCCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 557777---5058999999998731621114259995068976555655--18775574245069987889999999853
Q ss_pred --HHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf --102355332788863031--011123678887532221002221
Q gi|254780829|r 212 --VQKCYPELMRDESDRLID--MDTVHRDSIQMVENYGIVFLDEFD 253 (437)
Q Consensus 212 --~~~a~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~f~~~~~ 253 (437)
....-..+..+++.+.+. ++++++.|..+-++.-.+......
T Consensus 694 n~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~ 739 (802)
T KOG0733 694 NTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLF 739 (802)
T ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5799887545899985123226875365999999999999999986
No 30
>KOG0652 consensus
Probab=99.72 E-value=5.3e-19 Score=142.59 Aligned_cols=204 Identities=15% Similarity=0.070 Sum_probs=150.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~ 131 (437)
.|+|+||+||||||||||||+.|.--++.|.+..|..+.||+ ++.++.-++++|.-+.++|+++||+++.++.+.
T Consensus 204 pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMf-----IGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGt 278 (424)
T KOG0652 204 PPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMF-----IGDGAKLVRDAFALAKEKAPTIIFIDELDAIGT 278 (424)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHCCHHHHHHH-----HCCHHHHHHHHHHHHHCCCCEEEEEECHHHHCC
T ss_conf 997227657999757799999987401068873264777665-----334188999999875334983899730023233
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf 75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 (437)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
+|-.....|..+...+...++.+++.+..++..-.+..+++-..+++. ..+.++-++++....+....+.....++-.
T Consensus 279 KRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPA--LlRSGRLDRKIEfP~Pne~aRarIlQIHsR 356 (424)
T KOG0652 279 KRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPA--LLRSGRLDRKIEFPHPNEEARARILQIHSR 356 (424)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH--HHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 436531234389999999999860489975626788521643434888--864466444434889977898899988640
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC
Q ss_conf 102355332788863031011123678887532221002221001357665
Q gi|254780829|r 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN 262 (437)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~ 262 (437)
.....+....++..|.++.+.++.-...+++.--++.+.....+...++-.
T Consensus 357 KMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDfme 407 (424)
T KOG0652 357 KMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFME 407 (424)
T ss_pred CCCCCCCCCHHHHHHCCCCCCCHHHEEEHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 057788879899853335667232133005540899864653012788999
No 31
>KOG0738 consensus
Probab=99.70 E-value=2.4e-17 Score=131.88 Aligned_cols=145 Identities=20% Similarity=0.254 Sum_probs=99.9
Q ss_pred HHHHHHHH------------CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 99998620------------304868999999999987788640864444665668669967988868999999999707
Q gi|254780829|r 11 EIVSELDR------------YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 11 ~i~~~Ld~------------~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++++.|.+ -|.|-++||+.|-.||---..=-..-.+.|. .=++|||+||||||||+|||++|-+.+
T Consensus 193 ~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Girr--PWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738 193 DLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRR--PWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999999888860599867676316499999999887544424888742446--530005567999747899999988616
Q ss_pred CCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
Q ss_conf 87797143410121223431013467888765212789985654988886888755553114321100466898898616
Q gi|254780829|r 79 APFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDG 158 (437)
Q Consensus 79 VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (437)
.-||-+++|++|-- |-|+. |-+++-| |..+...|+.-||+++|+.....|... ..|..+......++.++++.
T Consensus 271 tTFFNVSsstltSK-wRGeS-EKlvRlL---FemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~ 343 (491)
T KOG0738 271 TTFFNVSSSTLTSK-WRGES-EKLVRLL---FEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGV 343 (491)
T ss_pred CEEEEECHHHHHHH-HCCCH-HHHHHHH---HHHHHHHCCCEEEHHHHHHHHHCCCCC--CCHHHHHHHHHHHHHHHHCC
T ss_conf 72787402456555-32526-9999999---999987488535335677887257986--50367888888999986334
Q ss_pred CCCCCE
Q ss_conf 888854
Q gi|254780829|r 159 EISDKE 164 (437)
Q Consensus 159 ~~~~~~ 164 (437)
......
T Consensus 344 ~~t~e~ 349 (491)
T KOG0738 344 QGTLEN 349 (491)
T ss_pred CCCCCC
T ss_conf 444456
No 32
>KOG0729 consensus
Probab=99.69 E-value=1.3e-17 Score=133.65 Aligned_cols=212 Identities=17% Similarity=0.102 Sum_probs=145.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~ 131 (437)
.|+||||.|||||||||+||++|.--++-|+.+=+|++.|. |||+. ++-+++.|..+..+..|.+|++++++.+.
T Consensus 210 PPKGvllyGPPGtGKTL~ARAVANRTdAcFIRViGSELVQK-YvGEG----ARMVRElFeMAr~KKACiiFFDEiDAiGG 284 (435)
T KOG0729 210 PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK-YVGEG----ARMVRELFEMARTKKACIIFFDEIDAIGG 284 (435)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHH-HHHHH----HHHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 98733786899986108999874566745876311899999-86246----89999999985236527998410102267
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf 75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 (437)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
-|-.+..+|..+...+...+..+|+.+..-.+--+...+++++.+++ ..+++++-++++....+...++.....++..
T Consensus 285 aRFDDg~ggDNEVQRTMLEli~QLDGFDpRGNIKVlmATNRPdtLDp--ALlRPGRlDRKVEF~LPDlegR~~I~kIHak 362 (435)
T KOG0729 285 ARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDP--ALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK 362 (435)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCH--HHCCCCCCCCCEECCCCCCCCCCEEEEEECC
T ss_conf 20357888727999999999986037788887589863489887687--6628764231121058762355125777411
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHC-CCCCCCCCCCCCCCH
Q ss_conf 102355332788863031011123678887532221002221001-357665654332101
Q gi|254780829|r 212 VQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIV-ARDSGNGIGVSREGV 271 (437)
Q Consensus 212 ~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~-~~~~~~~~~~~~~g~ 271 (437)
....-.....+.+.++.+...++..-..+.+.--- .+.+..|++ .+++-.+......|-
T Consensus 363 sMsverdIR~eLlarLCpnsTGAeiRSVCtEAGMf-AIraRRkvaTEKDFL~Av~KVvkgy 422 (435)
T KOG0729 363 SMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMF-AIRARRKVATEKDFLDAVNKVVKGY 422 (435)
T ss_pred CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14423221699998658897425788888774378-8887762200888999999998777
No 33
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.4e-16 Score=125.40 Aligned_cols=221 Identities=15% Similarity=0.098 Sum_probs=133.5
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCH
Q ss_conf 04868999999999987788640864444665668669967988868999999999707877971434101212234310
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DV 99 (437)
+.|-+++|..+-.++-.-.++-..-.. -.--.|+++||.||||||||+|||++|.+++.||+++++++++-. | +
T Consensus 244 iggl~~~k~~l~e~v~~~~~~~e~~~~-~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk-~----v 317 (494)
T COG0464 244 IGGLEEAKEELKEAIETPLKRPELFRK-LGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK-W----V 317 (494)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHH-H----H
T ss_conf 236377999999999999970887632-589888369998899975899999987544982488433555407-7----6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 13467888765212789985654988886888755553114321100466898898616888854998753554554433
Q gi|254780829|r 100 EQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179 (437)
Q Consensus 100 es~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~ 179 (437)
+.....+...+..+.+.++|.+|+++++.....+..... .......++++..+...+.......+..++.+...+..
T Consensus 318 Gesek~ir~~F~~A~~~~p~iifiDEiDs~~~~r~~~~~---~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~~ld~a 394 (494)
T COG0464 318 GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPA 394 (494)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCC---CHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHH
T ss_conf 599999999999999669988974886667412899876---37999999999997475443764899647983326875
Q ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 46676663210001101001354322100000102--3553327888630310111236788875322210022
Q gi|254780829|r 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQK--CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDE 251 (437)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~ 251 (437)
.. +++++...+....+....+......+..... ....+....+.+.+.+.++.+.+..+-++...++...
T Consensus 395 ~l--R~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~ 466 (494)
T COG0464 395 LL--RPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREA 466 (494)
T ss_pred HH--CCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 62--4366303787179898999999999854156511556419999987527789999999999999899854
No 34
>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=99.65 E-value=3.9e-17 Score=130.50 Aligned_cols=68 Identities=31% Similarity=0.511 Sum_probs=49.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCEEEC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86699679888689999999997078---7797143410121-----------223431013467888765212789985
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRR 119 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~V---PF~~~daT~ftE~-----------gyvG~DVes~i~~l~~~a~~~~~~a~~ 119 (437)
.|+||+||||||||+|||+||+.+++ ||++.||++|++. ||||.+-+..+.. .+++.+.
T Consensus 4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~-------~v~~~p~ 76 (168)
T pfam07724 4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTE-------AVRRKPY 76 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHH-------HHHHCCC
T ss_conf 799988989989999999999996798534488557565425699987058998726242650789-------9983898
Q ss_pred HHHHHHHHH
Q ss_conf 654988886
Q gi|254780829|r 120 DEVREQASI 128 (437)
Q Consensus 120 ~i~~~~~~~ 128 (437)
+++..+.++
T Consensus 77 ~VillDEIe 85 (168)
T pfam07724 77 SIVLIDEIE 85 (168)
T ss_pred CEEEEHHHH
T ss_conf 489865776
No 35
>KOG0736 consensus
Probab=99.64 E-value=1e-16 Score=127.85 Aligned_cols=101 Identities=21% Similarity=0.241 Sum_probs=78.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68669967988868999999999707877971434101212234310134678887652127899856549888868887
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~ 132 (437)
-|||||.|||||||||||||+|-+.+..|+++-|.++.-| |||+.-+. +++.|..+...+||.||+++++..+=.
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM-YVGqSE~N----VR~VFerAR~A~PCVIFFDELDSlAP~ 779 (953)
T KOG0736 705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM-YVGQSEEN----VREVFERARSAAPCVIFFDELDSLAPN 779 (953)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCEEEEEEECCHHHHHH-HHCCHHHH----HHHHHHHHHCCCCEEEEECCCCCCCCC
T ss_conf 3505887799985579999987543036785058899887-74301888----999999854469749983121232756
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 555531143211004668988986168
Q gi|254780829|r 133 RILDALVGKTATSNTREVFRKKLRDGE 159 (437)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (437)
|+...-.|+..+. ...+++++++.+.
T Consensus 780 RG~sGDSGGVMDR-VVSQLLAELDgls 805 (953)
T KOG0736 780 RGRSGDSGGVMDR-VVSQLLAELDGLS 805 (953)
T ss_pred CCCCCCCCCCHHH-HHHHHHHHHHCCC
T ss_conf 7887886540899-9999999862666
No 36
>KOG0728 consensus
Probab=99.62 E-value=1.1e-16 Score=127.55 Aligned_cols=140 Identities=17% Similarity=0.166 Sum_probs=99.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~ 131 (437)
.|+|+||.||||+||||||+++|...+--|+.+++|++.|- |+|+ +.+-+++.|..+.+.|+.+||-++++..+.
T Consensus 180 QPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk-~ige----gsrmvrelfvmarehapsiifmdeidsigs 254 (404)
T KOG0728 180 QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGE----GSRMVRELFVMAREHAPSIIFMDEIDSIGS 254 (404)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECHHHHHHH-HHHH----HHHHHHHHHHHHHHCCCCEEEEHHCCCCCC
T ss_conf 87604884699975629999987541407999644999999-8501----389999999998750882675000012123
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 7555531143211004668988986168888549987535545544334667666321000110100
Q gi|254780829|r 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSK 198 (437)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (437)
.|.-...+|..+...+...++.+++.++.+.+--.+-.+++-+.+++. ..++++-++.+....+.
T Consensus 255 ~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~a--llrpgridrkiefp~p~ 319 (404)
T KOG0728 255 SRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPA--LLRPGRIDRKIEFPPPN 319 (404)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH--HCCCCCCCCCCCCCCCC
T ss_conf 434578986389999999999740240003662699841642224686--63877545556489987
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.61 E-value=3.6e-15 Score=117.74 Aligned_cols=223 Identities=15% Similarity=0.046 Sum_probs=131.2
Q ss_pred CEECHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCC
Q ss_conf 304868999999999987788--640864444665668669967988868999999999707877971434101212234
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWR--RQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~--R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG 96 (437)
-|=|-+++|..|--||---.| .++-.-+. -.|+|+||.||||||||||||++|.+.++.|+.+-|.+..-- +||
T Consensus 542 diGGlee~kq~lreaveWPlk~~~~f~k~G~---~PP~Gvll~GPPGtGktllakava~es~anfi~v~GPe~lsk-WvG 617 (980)
T TIGR01243 542 DIGGLEEVKQELREAVEWPLKAPEVFEKLGI---RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK-WVG 617 (980)
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHCCC---CCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCCHHHHH-HHC
T ss_conf 1466789999998775234440589986078---899734874689861688888774014564677407312234-403
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 31013467888765212789985654988886888755553114321100466898898616888854998753554554
Q gi|254780829|r 97 RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 (437)
Q Consensus 97 ~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~ 176 (437)
-.-..++..+..+...||+.+|+++++...-.|....... .-.+...++++..++........+.+..+++++.+
T Consensus 618 ----ese~~ir~if~~arq~aP~~~f~deidaiaP~rG~~~~~~-~vtd~~~nqll~e~dG~~~~~~vvvi~atnrPdi~ 692 (980)
T TIGR01243 618 ----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGASLDEK-GVTDRIVNQLLTELDGLEELSDVVVIAATNRPDIL 692 (980)
T ss_pred ----HHHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCC
T ss_conf ----2479999999986412873787302111054124421001-02689999999864044343665898615887423
Q ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 4334667666321000110100135432210000010235533278886303101112367888753222100222
Q gi|254780829|r 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEF 252 (437)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~ 252 (437)
++.. .+++..++-+....+....+.....++................+.+.+..+++....+-+......+..+
T Consensus 693 dPal--lrPGr~dr~i~vP~Pd~~ar~~ifk~ht~~~~l~~dv~l~~la~~teGytGadi~a~~rea~~~~~r~~~ 766 (980)
T TIGR01243 693 DPAL--LRPGRLDRLILVPAPDEEARLEIFKIHTRSMPLAEDVDLEELAKKTEGYTGADIEAVVREAALAALREVV 766 (980)
T ss_pred CCCC--CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 6100--4887412168605985567676765531113530134389998651687632299999999999999973
No 38
>KOG0727 consensus
Probab=99.60 E-value=7.5e-16 Score=122.19 Aligned_cols=137 Identities=20% Similarity=0.253 Sum_probs=96.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~ 131 (437)
.|.|+||.||||||||+|||++|.--.+.|+.+-+|+|.+. |.|+. .+-+++.+.-+.++|+.+||+++++....
T Consensus 188 pprgvllygppg~gktml~kava~~t~a~firvvgsefvqk-ylgeg----prmvrdvfrlakenapsiifideidaiat 262 (408)
T KOG0727 188 PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK-YLGEG----PRMVRDVFRLAKENAPSIIFIDEIDAIAT 262 (408)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCHHEEEECCHHHHHH-HHCCC----CHHHHHHHHHHHCCCCCEEEEEHHHHHHH
T ss_conf 98622775799975789999986126111446301899999-85548----38999999987616983798622456766
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEE---EEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 7555531143211004668988986168888549---987535545544334667666321000110100
Q gi|254780829|r 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEI---DIEVADTSSDISNFDIPGGASVGILNLSELFSK 198 (437)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (437)
+| .++..|.+ .+....+..++-.+.+++-.. .|..+++...+++. ..++++-++++....+.
T Consensus 263 kr-fdaqtgad--revqril~ellnqmdgfdq~~nvkvimatnradtldpa--llrpgrldrkiefplpd 327 (408)
T KOG0727 263 KR-FDAQTGAD--REVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPA--LLRPGRLDRKIEFPLPD 327 (408)
T ss_pred HH-CCCCCCCC--HHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCHH--HCCCCCCCCCCCCCCCC
T ss_conf 41-24444631--89999999999751476766655899832755566876--62876434443577985
No 39
>KOG0726 consensus
Probab=99.58 E-value=4.8e-16 Score=123.44 Aligned_cols=207 Identities=13% Similarity=0.032 Sum_probs=130.6
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56686699679888689999999997078779714341012122343101346788876521278998565498888688
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~ 130 (437)
..|+||+|+||||||||||||++|.--.+.|..+-+|++.|- |.|+ +..-+++.|..+.+.|+.++|++++++.+
T Consensus 217 kpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk-ylGd----GpklvRqlF~vA~e~apSIvFiDEIdAiG 291 (440)
T KOG0726 217 KPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGD----GPKLVRELFRVAEEHAPSIVFIDEIDAIG 291 (440)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHCC----CHHHHHHHHHHHHHCCCCEEEEEHHHHHC
T ss_conf 999705886799975368888772455212455650899998-7365----51999999988875298269864001104
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEE
Q ss_conf 87555531143211004668988986168888549987535545544334667666321000110100135432210000
Q gi|254780829|r 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRM 210 (437)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (437)
-+|-....+|..+-..+...++.++..++.-...-.|-.++.-..++ ...-+++.-++.+....+...-++....++-
T Consensus 292 tKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LD--PaLiRPGrIDrKIef~~pDe~TkkkIf~IHT 369 (440)
T KOG0726 292 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD--PALIRPGRIDRKIEFPLPDEKTKKKIFQIHT 369 (440)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCC--HHHCCCCCCCCCCCCCCCCHHHHCEEEEEEE
T ss_conf 52134788507899999999987426866567758997416534467--7552787543111257975563231568750
Q ss_pred EHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCC
Q ss_conf 010235533278886303101112367888753222100222100135766565
Q gi|254780829|r 211 SVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI 264 (437)
Q Consensus 211 ~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~ 264 (437)
.-......+..+..--.-+..++++....+.++-..|.+.-.-++.+.++..+.
T Consensus 370 s~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~ 423 (440)
T KOG0726 370 SRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAK 423 (440)
T ss_pred CCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 243001246699975201335631088898777689999987621538799999
No 40
>KOG0737 consensus
Probab=99.56 E-value=1.5e-14 Score=113.82 Aligned_cols=182 Identities=19% Similarity=0.132 Sum_probs=116.2
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56686699679888689999999997078779714341012122343101346788876521278998565498888688
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~ 130 (437)
..|+||||.||||||||+|||++|++++.+|+.++.+++|.--| |+.- - -+...|..+-+-.|++||+++++...
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf-gE~e-K---lv~AvFslAsKl~P~iIFIDEvds~L 199 (386)
T KOG0737 125 RPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF-GEAQ-K---LVKAVFSLASKLQPSIIFIDEVDSFL 199 (386)
T ss_pred CCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHH-HHHH-H---HHHHHHHHHHHCCCCEEEHHHHHHHH
T ss_conf 68643051189982188999999987279710001365532667-7788-8---99999820653486156566588898
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCE---EEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCE
Q ss_conf 8755553114321100466898898616888854---9987535545544334667666321000110100135432210
Q gi|254780829|r 131 EERILDALVGKTATSNTREVFRKKLRDGEISDKE---IDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKK 207 (437)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (437)
..| . .+.++.......+-..+=++..++.. ++...++++..++.....+.+.++..++.. ..++.....
T Consensus 200 ~~R-~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~----~~qR~kILk 271 (386)
T KOG0737 200 GQR-R---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPD----AEQRRKILK 271 (386)
T ss_pred HHC-C---CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEECCCC----HHHHHHHHH
T ss_conf 640-4---64279999999999998616467887159997079998437899998476436537984----444999999
Q ss_pred EEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 00001023553327888630310111236788875322
Q gi|254780829|r 208 IRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 (437)
Q Consensus 208 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 245 (437)
+......--..++..+.++++.+.++.+.-..+..+..
T Consensus 272 viLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~ 309 (386)
T KOG0737 272 VILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAAL 309 (386)
T ss_pred HHHCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99424346877698888876089867789999998767
No 41
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.56 E-value=3.6e-13 Score=104.79 Aligned_cols=78 Identities=28% Similarity=0.448 Sum_probs=54.1
Q ss_pred CCCCHHHHHHHHHHCEECHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 76888999998620304868999---999999987788640864444665668669967988868999999999707877
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AK---k~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF 81 (437)
.-|-|+. ||+| |||++-. +.+-.++-++ .-++++|.||||||||-||+.+|+..+.+|
T Consensus 20 ~rmRP~~----Lde~-vGQ~hllg~g~~Lrr~i~~~--------------~~~S~Il~GPPGtGKTTLA~iIA~~t~~~F 80 (726)
T PRK13341 20 DRLRPRT----LEEF-VGQDHILGEGRLLRRAIKAD--------------RVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (726)
T ss_pred HHHCCCC----HHHH-CCCHHHCCCCCHHHHHHHCC--------------CCCEEEEECCCCCCHHHHHHHHHHHHCCCE
T ss_conf 8629998----7773-59575428982899999769--------------998278889799999999999988748867
Q ss_pred EEEECCCEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 97143410121223431013467888765212
Q gi|254780829|r 82 IKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 (437)
Q Consensus 82 ~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~ 113 (437)
+..+| |.+.+.++......+
T Consensus 81 ~~lsA------------v~sgvkdlr~ii~~A 100 (726)
T PRK13341 81 SSLNA------------VLAGVKDLRAEVDAA 100 (726)
T ss_pred EEEEC------------CCCCHHHHHHHHHHH
T ss_conf 99856------------203779999999999
No 42
>KOG0735 consensus
Probab=99.55 E-value=1e-14 Score=114.78 Aligned_cols=151 Identities=19% Similarity=0.197 Sum_probs=111.4
Q ss_pred EECHHHHHHHHHHHHH--HHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCC
Q ss_conf 0486899999999998--77886408644446656686699679888689999999997078779714341012122343
Q gi|254780829|r 20 IIGQQDAKRAVAIALR--NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 (437)
Q Consensus 20 VvGQ~~AKk~lavav~--nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~ 97 (437)
|=|-.+||++|--.+- ..|--++.+-.+| .++||||.||||||||+||-++|...++-|+++-|.++.-- |+|.
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr---~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K-yIGa 744 (952)
T KOG0735 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLR---LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK-YIGA 744 (952)
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHCCCC---CCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECCHHHHHH-HHCC
T ss_conf 3358999999999985541036788608866---65545887799985788888888537805998258899998-7450
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf 10134678887652127899856549888868887555531143211004668988986168888549987535545544
Q gi|254780829|r 98 NVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDIS 177 (437)
Q Consensus 98 DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~ 177 (437)
.-+. +++.|..+...+||..|+++.+..+-+|++++-+-. +...++++.+|++-++-+.+..+..+.+++-.+
T Consensus 745 SEq~----vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRpdliD 817 (952)
T KOG0735 745 SEQN----VRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRPDLID 817 (952)
T ss_pred CHHH----HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCH---HHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
T ss_conf 0788----999999865149748971210243766687777742---999999987603633445389997337834367
Q ss_pred CCCC
Q ss_conf 3346
Q gi|254780829|r 178 NFDI 181 (437)
Q Consensus 178 ~~~~ 181 (437)
+...
T Consensus 818 pALL 821 (952)
T KOG0735 818 PALL 821 (952)
T ss_pred HHHC
T ss_conf 7662
No 43
>pfam05496 RuvB_N Holliday junction DNA helicase ruvB N-terminus. The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Probab=99.54 E-value=6.1e-14 Score=109.80 Aligned_cols=70 Identities=31% Similarity=0.514 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 76888999998620304868999999999987788640864444665668669967988868999999999707877971
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
-.|-|+. |++| |||++.++.+..++..-- .+.+.. +.+||.||||||||-||+-+|++++.+|...
T Consensus 16 ~~lRP~~----l~e~-vGQehl~~~l~~~i~a~~--------~~~~~l-~h~lf~GPPG~GKTTlAriiAk~~~~~~~~~ 81 (234)
T pfam05496 16 RSLRPRR----LDEY-IGQEKVKENLKIFIEAAK--------KRGEAL-DHVLLYGPPGLGKTTLANIIANEMGVNIRIT 81 (234)
T ss_pred HCCCCCC----HHHC-CCHHHHHHHHHHHHHHHH--------HCCCCC-CEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
T ss_conf 5549897----6660-694999999999999887--------427776-6278878999988899999998408753761
Q ss_pred ECCC
Q ss_conf 4341
Q gi|254780829|r 85 EVTK 88 (437)
Q Consensus 85 daT~ 88 (437)
+|..
T Consensus 82 s~~~ 85 (234)
T pfam05496 82 SGPA 85 (234)
T ss_pred CCHH
T ss_conf 4266
No 44
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily; InterPro: IPR005938 The ATPase Cdc48 is required for membrane fusion and protein degradation. It possesses chaperone-like activities and can functionally interact with Hsc70. Yeast CDC48 plays a role in cell division control whereas eukaryotic homologues are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.; GO: 0016787 hydrolase activity.
Probab=99.53 E-value=1e-14 Score=114.79 Aligned_cols=159 Identities=17% Similarity=0.142 Sum_probs=118.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970787797143410121223431013467888765212789985654988886888
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAE 131 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~ 131 (437)
.|+||||+||||||||||||++|.++++-|+.+.|.+.+-- |+|+.- .+|+..+..+.+.||..+|+++++...-
T Consensus 239 PPkG~ll~GPPGtGktllaka~ane~~a~f~~inGPeimsk-y~Ge~e----~~lr~if~eaeenaP~iifideidaiaP 313 (980)
T TIGR01243 239 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFIAINGPEIMSK-YYGESE----ERLREIFKEAEENAPSIIFIDEIDAIAP 313 (980)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHH-HCCCCH----HHHHHHHHHHHHCCCCEEEEECHHHCCC
T ss_conf 98735875589861789999987530551788506034433-136307----8999999865305870787412110076
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEE
Q ss_conf 75555311432110046689889861688885499875355455443346676663210001101001354322100000
Q gi|254780829|r 132 ERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMS 211 (437)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
+|.-- .|.. ......+++.+++....-+..|.+..+++++.+++.. .+++.+++.+....+...++.....++..
T Consensus 314 kr~e~--~Gev-e~r~v~qlltlmdGlk~rG~v~viGatnrP~a~dPal--rrPGrfdrei~~~~Pd~~~r~eil~~htr 388 (980)
T TIGR01243 314 KREEV--TGEV-EKRVVAQLLTLMDGLKGRGKVIVIGATNRPDALDPAL--RRPGRFDREIEIGVPDKEGRKEILQIHTR 388 (980)
T ss_pred CCCCH--HHHH-HHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHH--CCCCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 41000--0168-8999999999974002487289981468850026224--27886443357418854567888876414
Q ss_pred HHHHHHHHH
Q ss_conf 102355332
Q gi|254780829|r 212 VQKCYPELM 220 (437)
Q Consensus 212 ~~~a~~~~~ 220 (437)
..+....+.
T Consensus 389 ~mP~~~d~~ 397 (980)
T TIGR01243 389 NMPLAEDVD 397 (980)
T ss_pred CCCCHHHCC
T ss_conf 787501100
No 45
>KOG0651 consensus
Probab=99.50 E-value=3.1e-14 Score=111.67 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=86.3
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56686699679888689999999997078779714341012122343101346788876521278998565498888688
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~ 130 (437)
..|+++||.||||+|||++|+++|.-+||.|+++.++++..- |.|+-.-- +++.+.++.+..+|.+|.+++++.+
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k-yiGEsaRl----IRemf~yA~~~~pciifmdeiDAig 238 (388)
T KOG0651 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK-YIGESARL----IRDMFRYAREVIPCIIFMDEIDAIG 238 (388)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHH-HCCCHHHH----HHHHHHHHHHHCCEEEEEHHHHHHC
T ss_conf 788256876799986459999999865985477447666330-02657889----9999977865275577510123114
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC---CEEEEEECCCCCCCCCCCCCCC
Q ss_conf 87555531143211004668988986168888---5499875355455443346676
Q gi|254780829|r 131 EERILDALVGKTATSNTREVFRKKLRDGEISD---KEIDIEVADTSSDISNFDIPGG 184 (437)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~i~i~~~~~~~~~~~~~~~~~ 184 (437)
..+ ..-+..++......+-.++..+.+.+ .+-.|...+++..+.++...++
T Consensus 239 GRr---~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpG 292 (388)
T KOG0651 239 GRR---FSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPG 292 (388)
T ss_pred CEE---ECCCCCHHHHHHHHHHHHHHHHCCCHHCCCCCEEEECCCCCCCCHHHCCCC
T ss_conf 577---335552059999999999874214012066317985388665665542875
No 46
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.49 E-value=6.8e-13 Score=103.02 Aligned_cols=66 Identities=24% Similarity=0.436 Sum_probs=49.5
Q ss_pred CCCCCHHHHHHHHHHCEECHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 676888999998620304868999---99999998778864086444466566866996798886899999999970787
Q gi|254780829|r 4 TFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 4 ~~~ltP~~i~~~Ld~~VvGQ~~AK---k~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
+.-|-|+. ||++ |||++.. +.|.-++-++ ...++||.||||||||-||+.||+.++.+
T Consensus 4 Aer~RP~~----lde~-vGQ~hllg~~~~L~~~i~~~--------------~~~s~Il~GPPG~GKTTlA~iiA~~~~~~ 64 (417)
T PRK13342 4 AERMRPKT----LDEV-VGQEHLLGPGKPLRRMIEAG--------------RLSSMILWGPPGTGKTTLARIIAGATDAE 64 (417)
T ss_pred HHHHCCCC----HHHH-CCCHHHHCCCHHHHHHHHCC--------------CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 16449998----8885-79877608971999999769--------------99759988969998999999999986898
Q ss_pred EEEEECCC
Q ss_conf 79714341
Q gi|254780829|r 81 FIKVEVTK 88 (437)
Q Consensus 81 F~~~daT~ 88 (437)
|+..+||.
T Consensus 65 f~~lnA~~ 72 (417)
T PRK13342 65 FEALSAVT 72 (417)
T ss_pred EEEEECCC
T ss_conf 89961410
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.43 E-value=1.4e-12 Score=101.05 Aligned_cols=74 Identities=28% Similarity=0.517 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 68889999986203048689999999999877886408644446656686699679888689999999997078779714
Q gi|254780829|r 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85 (437)
Q Consensus 6 ~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~d 85 (437)
+|-|+ .|++| |||++.|+.|+|++----+| .+- .-.+||.||||.|||-||+-+|++++++|-..+
T Consensus 18 ~lRP~----~l~ef-iGQ~~i~~~L~v~i~Aak~r--------~e~-ldH~Ll~GPPGlGKTTLA~iiA~E~~~~~~~ts 83 (328)
T PRK00080 18 SLRPK----SLDEF-IGQEKVKENLKIFIEAAKKR--------GEA-LDHVLLYGPPGLGKTTLANIIANEMGVNIRITS 83 (328)
T ss_pred CCCCC----CHHHC-CCHHHHHHHHHHHHHHHHHC--------CCC-CCCEEEECCCCCCHHHHHHHHHHHHCCCCEECC
T ss_conf 55988----57663-59599999999999999964--------999-880576588998899999999998688815624
Q ss_pred CCCEEECC
Q ss_conf 34101212
Q gi|254780829|r 86 VTKFTEIG 93 (437)
Q Consensus 86 aT~ftE~g 93 (437)
|..+.-.|
T Consensus 84 GP~lek~~ 91 (328)
T PRK00080 84 GPALEKAG 91 (328)
T ss_pred CCCCCCHH
T ss_conf 50016747
No 48
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family; InterPro: IPR014252 This entry shows some relation to the widely distributed ATP-dependent protease La, also called Lon or LonA (IPR004815 from INTERPRO), but is more closely related to LonB (IPR014251 from INTERPRO), a LonA paralog found only in endospore-forming bacteria. Proteins in this entry are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ). They are restricted to a subset of endospore-forming species, and probably participate in the program of endospore formation. We propose the designation LonC..
Probab=99.43 E-value=9e-12 Score=95.72 Aligned_cols=245 Identities=24% Similarity=0.325 Sum_probs=157.3
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCCE
Q ss_conf 0486899999999998778864086444466566866996798886899999999970----------787797143410
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA----------GAPFIKVEVTKF 89 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l----------~VPF~~~daT~f 89 (437)
|||||.|-|+|=--| .+.-|-.|||+||||+|||--||-.=.++ |+||+=+||||+
T Consensus 157 iVGQerAI~aLlaK~--------------aSPfPQHiiLYGPPGVGKTTaARl~LEe~K~~~~tPF~~DA~FvEVDGtTL 222 (616)
T TIGR02903 157 IVGQERAIKALLAKL--------------ASPFPQHIILYGPPGVGKTTAARLALEEAKKLKNTPFAEDAPFVEVDGTTL 222 (616)
T ss_pred CCCHHHHHHHHHHHH--------------CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCC
T ss_conf 333468999999763--------------188866078557338847899999876213687447611378575157626
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 12122343101346788876521278998565498888688875555311432110046689889861688885499875
Q gi|254780829|r 90 TEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEV 169 (437)
Q Consensus 90 tE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~ 169 (437)
. ||+++-
T Consensus 223 R---------------------WDPREv---------------------------------------------------- 229 (616)
T TIGR02903 223 R---------------------WDPREV---------------------------------------------------- 229 (616)
T ss_pred C---------------------CCCCCC----------------------------------------------------
T ss_conf 6---------------------774101----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 35545544334667666321000110100135432210000010235533278886303101112367888753222100
Q gi|254780829|r 170 ADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249 (437)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~ 249 (437)
++++-+..+.+-=|..-+++.+.- ++.-..+| ..-.|-|+.|+
T Consensus 230 ---TNPLLGSVHDPIYQGa~RDLAE~G---------------vPEPk~GL-------------------VT~AHGGvLFI 272 (616)
T TIGR02903 230 ---TNPLLGSVHDPIYQGARRDLAETG---------------VPEPKLGL-------------------VTDAHGGVLFI 272 (616)
T ss_pred ---CCCCCCCCCCCCCCCCCHHHCCCC---------------CCCCCCCC-------------------CCCCCCCEEEE
T ss_conf ---477677625765567640110478---------------79898987-------------------10047756765
Q ss_pred CCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC---CCCCCCCCHH----HHHHCCCCCCCC--------CCCCCC
Q ss_conf 2221001357665654332101223432046652211---2466642024----664016754221--------121255
Q gi|254780829|r 250 DEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST---KYGSINTDHI----LFIASGAFHVSR--------PADLLP 314 (437)
Q Consensus 250 ~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~---~~~~~~~~~~----~~i~~~~~~~~k--------~~glip 314 (437)
||+... ..=.|.+++...|..+|.- .|-+-..... -++..||+.|.. |+.+-|
T Consensus 273 DEIGEL------------D~lLQnKLLKVLEDKrV~F~SsYYDpdD~NvPkYIK~lFe~GAPADFvLIGATTr~P~eINp 340 (616)
T TIGR02903 273 DEIGEL------------DPLLQNKLLKVLEDKRVEFSSSYYDPDDENVPKYIKKLFEEGAPADFVLIGATTRDPEEINP 340 (616)
T ss_pred ECHHHH------------HHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCCHHHCCH
T ss_conf 021122------------27876324443226436653212487537865588885226888256872661588244051
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 43345126886155424678887643468899999999875196899842499999999998404001237246799999
Q gi|254780829|r 315 EIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVME 394 (437)
Q Consensus 315 E~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E 394 (437)
=+--|=..+ =|+||+-+|...|... +.+.+.-+..++--+.||+-..+ | |.=-.|+-
T Consensus 341 ALRSRCaEv-fFePL~p~dI~~Iv~~-------------AA~klnv~L~~gV~e~Ia~YTie--------G-RkAvnILA 397 (616)
T TIGR02903 341 ALRSRCAEV-FFEPLTPEDIKEIVLN-------------AAEKLNVKLAEGVEELIARYTIE--------G-RKAVNILA 397 (616)
T ss_pred HHHCCCCEE-ECCCCCHHHHHHHHHH-------------HHHHCCCCCCCCHHHHHHHCCCC--------C-HHHHHHHH
T ss_conf 233014313-2179887899999999-------------88861770003648787214713--------1-12223465
Q ss_pred HHHHHHHCCCCCC--CCCEEEECHHHHHHHH
Q ss_conf 9867762127568--7768998599999899
Q gi|254780829|r 395 RVLEDISFSASDL--QEKTVVIDAEYVRLHI 423 (437)
Q Consensus 395 ~~l~d~~fe~p~~--~~~~v~Id~~~V~~~l 423 (437)
....=+.|..|.. +...|.|+.+-|.+-+
T Consensus 398 D~Yg~~ly~~~~~~~~~d~~~I~~~dv~evv 428 (616)
T TIGR02903 398 DVYGYALYKKAEALKEEDKVTITADDVKEVV 428 (616)
T ss_pred HHHHHHHHCCCCCCCCCCCEEEEHHHHHHHH
T ss_conf 4676765304555677774266186777677
No 49
>KOG0740 consensus
Probab=99.41 E-value=2.2e-13 Score=106.17 Aligned_cols=150 Identities=24% Similarity=0.340 Sum_probs=93.7
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970787797143410121223431
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~D 98 (437)
-+-|.+.||+.+--+|-=-..|--.-.+.|. .+.++||.||||+|||+|++++|.++++-||.++|+++|=. |+|+.
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr~d~F~glr~--p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK-~~Ge~ 230 (428)
T KOG0740 154 DIAGLEDAKQSLKEAVILPLLRPDLFLGLRE--PVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK-YVGES 230 (428)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCC--CCCHHHEECCCCCCHHHHHHHHHHHHCCEEEECCHHHHHHH-CCCHH
T ss_conf 7740566899865423220455376523544--53111200589884479999998620665763068886532-46707
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 013467888765212789985654988886888755553114321100466898898616888854998753554554
Q gi|254780829|r 99 VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176 (437)
Q Consensus 99 Ves~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~ 176 (437)
|-+++-|...| ....+..||+++++..--+| .+........-.+.-..+........+++.+.+.+++.+...
T Consensus 231 -eK~vralf~vA---r~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740 231 -EKLVRALFKVA---RSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred -HHHHHHHHHHH---HHCCCEEEEECHHHHHHHHC-CCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHH
T ss_conf -78999999998---71397089840256788636-875454455565577765404457888707998158883677
No 50
>CHL00181 cbbX CbbX; Provisional
Probab=99.36 E-value=1e-10 Score=88.86 Aligned_cols=89 Identities=24% Similarity=0.348 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHCEECHHHHHHHHHH---HHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-------
Q ss_conf 8899999862030486899999999---998778864086444466566866996798886899999999970-------
Q gi|254780829|r 8 SPREIVSELDRYIIGQQDAKRAVAI---ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA------- 77 (437)
Q Consensus 8 tP~~i~~~Ld~~VvGQ~~AKk~lav---av~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l------- 77 (437)
+=.++-+.||+-.||-+..|+.+-- -+.-.++|... ++...-..-|.+++||||||||-.||.+|+.+
T Consensus 13 ~lee~L~eLd~eliGL~~VK~~v~~l~~~~~~~~~R~~~--Gl~~~~~s~h~vF~GnPGTGKTTVARl~a~il~~lG~L~ 90 (287)
T CHL00181 13 QIQEVLDELDEELIGLVPVKTRIREIAALLLVDRLRKNL--GLVSSSPGLHMSFTGSPGTGKTTVALKMADILYRLGYIK 90 (287)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 499999999886469699999999999999999999987--999888765388878998679999999999999869955
Q ss_pred CCCEEEEECCCEEECCCCCCCH
Q ss_conf 7877971434101212234310
Q gi|254780829|r 78 GAPFIKVEVTKFTEIGYVGRNV 99 (437)
Q Consensus 78 ~VPF~~~daT~ftE~gyvG~DV 99 (437)
.-.|+-++.+.|. .+|||.-.
T Consensus 91 ~g~vve~~r~dLv-g~yvG~Ta 111 (287)
T CHL00181 91 KGHLITVTRDDLV-GQYIGHTA 111 (287)
T ss_pred CCEEEEECHHHHC-CCCCCCCH
T ss_conf 8958995358841-63535216
No 51
>KOG0730 consensus
Probab=99.36 E-value=3e-12 Score=98.81 Aligned_cols=217 Identities=12% Similarity=0.000 Sum_probs=139.1
Q ss_pred ECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHH
Q ss_conf 48689999999999877886408644446656686699679888689999999997078779714341012122343101
Q gi|254780829|r 21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 (437)
Q Consensus 21 vGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVe 100 (437)
-|=...-.++..+|+.-.+--++.... .-..|.|+||.||||||||.|++++|++.++-|+.+.|.+.... |-|+
T Consensus 187 gg~~~~~~~i~e~v~~pl~~~~~~~s~-g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k-~~gE--- 261 (693)
T KOG0730 187 GGLKRQLSVIRELVELPLRHPALFKSI-GIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISK-FPGE--- 261 (693)
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECCCHHHHHH-CCCC---
T ss_conf 136677888899887430160114431-89999874443899998189999999973722574062899985-2463---
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 34678887652127899-85654988886888755553114321100466898898616888854998753554554433
Q gi|254780829|r 101 QIIRDLVDVAINIVRES-RRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNF 179 (437)
Q Consensus 101 s~i~~l~~~a~~~~~~a-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~ 179 (437)
--+.|+.++....+.+ +..+++++++...-++..... .......++..+++.......+|++...++++.++..
T Consensus 262 -te~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~----~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~a 336 (693)
T KOG0730 262 -TESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD----VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPA 336 (693)
T ss_pred -HHHHHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCCCH----HHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHH
T ss_conf -17789999999866599807758767623776433324----8889999999998527676746999715885556856
Q ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 46676663210001101001354322100000102355332788863031011123678887532221002
Q gi|254780829|r 180 DIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLD 250 (437)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~ 250 (437)
... ++++..+.-+.+...++......+..............+++.+.+..+++.+..+.++...+..+
T Consensus 337 lRR---gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~ 404 (693)
T KOG0730 337 LRR---GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR 404 (693)
T ss_pred HHC---CCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 524---78853157448983358899999986168872556899998734614787999999987776655
No 52
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.33 E-value=1.6e-10 Score=87.61 Aligned_cols=94 Identities=22% Similarity=0.451 Sum_probs=58.7
Q ss_pred HHHHHHHHHHCEECHHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 89999986203048689999999--9998778864086444466566866996798886899999999970787797143
Q gi|254780829|r 9 PREIVSELDRYIIGQQDAKRAVA--IALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 9 P~~i~~~Ld~~VvGQ~~AKk~la--vav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
-+.-.+-||+---|-++.|+.+= .||+ ++....+ .+=+.|+||||||||-|||.+|+.+|=+|+.++-
T Consensus 313 l~~A~~iLd~dHyGL~~vKeRile~lAv~------~~~~~~k----g~IlclvGpPGvGKTSl~~sIA~al~r~f~risl 382 (784)
T PRK10787 313 LRQAQEILDTDHYGLERVKDRILEYLAVQ------SRVNKIK----GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMAL 382 (784)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHH------HHCCCCC----CCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99999987654306577999999999999------8624677----8779964699877246999999985898699806
Q ss_pred CCEEE--------CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 41012--------122343101346788876521
Q gi|254780829|r 87 TKFTE--------IGYVGRNVEQIIRDLVDVAIN 112 (437)
Q Consensus 87 T~ftE--------~gyvG~DVes~i~~l~~~a~~ 112 (437)
--..- --|||.=.+.+++-+..+-..
T Consensus 383 GGv~DeaeirGHrrTYvgampGrii~~l~~a~~~ 416 (784)
T PRK10787 383 GGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVK 416 (784)
T ss_pred CCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 8878888825643343443683899999974898
No 53
>pfam00004 AAA ATPase family associated with various cellular activities (AAA). AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Probab=99.30 E-value=6.2e-12 Score=96.76 Aligned_cols=114 Identities=22% Similarity=0.313 Sum_probs=69.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69967988868999999999707877971434101212234310134678887652127899856549888868887555
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERIL 135 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~ 135 (437)
+||.||||||||++|+++|++++.||+.++++++.. .|+|+-.. ++.+.+......+++.++.++++....++..
T Consensus 1 iLl~GppGtGKT~~a~~la~~~~~~~~~v~~~~~~~-~~~g~~~~----~i~~~f~~a~~~~p~Il~iDe~d~l~~~~~~ 75 (131)
T pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVS-KYVGESEK----RLRELFEAAKKLAPCVIFIDEIDALAGSRGS 75 (131)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEECCCCCCCC-CCCCHHHH----HHHHHHHHHHHCCCCEEEECHHHHHHCCCCC
T ss_conf 987899999999999999999789853324201222-33450688----8999999999749918983116777516788
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHCCCCCC-EEEEEECCCCCCCC
Q ss_conf 5311432110046689889861688885-49987535545544
Q gi|254780829|r 136 DALVGKTATSNTREVFRKKLRDGEISDK-EIDIEVADTSSDIS 177 (437)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~ 177 (437)
. +..........++..+........ .+.+..++....++
T Consensus 76 ~---~~~~~~~~~~~ll~~ld~~~~~~~~v~~I~tTN~~~~ld 115 (131)
T pfam00004 76 G---GDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLD 115 (131)
T ss_pred C---CCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCC
T ss_conf 8---887513268789999850224688769999759904499
No 54
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.2e-10 Score=83.40 Aligned_cols=104 Identities=16% Similarity=0.203 Sum_probs=75.3
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 25543345126886155424678887643468899999999875196899842499999999998404001237246799
Q gi|254780829|r 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQT 391 (437)
Q Consensus 312 lipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~Lrt 391 (437)
+|+-+.-|.- +..++..+.++...|- ++-|+.++.+.-+...-++.|+|+|+..|.+.-.. +-|-|+|..
T Consensus 479 IP~PLlDRME-iI~lsgYt~~EKl~IA---k~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTR------EAGVR~LeR 548 (782)
T COG0466 479 IPAPLLDRME-VIRLSGYTEDEKLEIA---KRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTR------EAGVRNLER 548 (782)
T ss_pred CCHHHHCCEE-EEEECCCCHHHHHHHH---HHHCCHHHHHHCCCCCCCEEECHHHHHHHHHHHHH------HHHHHHHHH
T ss_conf 9867843030-5642688869999999---98445689997599823355658999999998767------621038999
Q ss_pred HHHHHHHHHHCCCCCCCCCE-EEECHHHHHHHHHH
Q ss_conf 99998677621275687768-99859999989999
Q gi|254780829|r 392 VMERVLEDISFSASDLQEKT-VVIDAEYVRLHIGD 425 (437)
Q Consensus 392 I~E~~l~d~~fe~p~~~~~~-v~Id~~~V~~~l~~ 425 (437)
.+.+++.-+..+.-..+.+. +.||..-+++-|+.
T Consensus 549 ~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 549 EIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHCC
T ss_conf 99999999999997257566244278899997398
No 55
>KOG0741 consensus
Probab=99.27 E-value=1.2e-11 Score=94.84 Aligned_cols=192 Identities=17% Similarity=0.085 Sum_probs=118.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCC-EEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Q ss_conf 6866996798886899999999970787-7971434101212234310134678887652127899-----856549888
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLAGAP-FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRES-----RRDEVREQA 126 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l~VP-F~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a-----~~~i~~~~~ 126 (437)
-|||||.|||||||||+||-+-++||+- ==++.|.+..-- |||+.-+.+.. |...|....+.. .++|+++++
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~K-YVGeSE~NvR~-LFaDAEeE~r~~g~~SgLHIIIFDEi 333 (744)
T KOG0741 256 VKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNK-YVGESEENVRK-LFADAEEEQRRLGANSGLHIIIFDEI 333 (744)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHH-HHCCCHHHHHH-HHHHHHHHHHHHCCCCCCEEEEEHHH
T ss_conf 23578877999870189999878745799863475788987-60630788999-98757999984376677259996346
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 86888755553114321100466898898616888854998753554554433466766632100011010013543221
Q gi|254780829|r 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK 206 (437)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (437)
++.-..|.-.++ +.+-.+...++++..++.-+--.+..+|.++++.+..+... .++++.-..+.-..|.-.++.-..
T Consensus 334 DAICKqRGS~~g-~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEAL--LRPGRlEVqmEIsLPDE~gRlQIl 410 (744)
T KOG0741 334 DAICKQRGSMAG-STGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEAL--LRPGRLEVQMEISLPDEKGRLQIL 410 (744)
T ss_pred HHHHHHCCCCCC-CCCCCHHHHHHHHHHCCCHHHHHCEEEEECCCCHHHHHHHH--CCCCCEEEEEEEECCCCCCCEEEE
T ss_conf 799974488789-88631899999998532287661678994047366678875--588716999998468876727888
Q ss_pred EEEEEHHHHH----HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 0000010235----533278886303101112367888753222100
Q gi|254780829|r 207 KIRMSVQKCY----PELMRDESDRLIDMDTVHRDSIQMVENYGIVFL 249 (437)
Q Consensus 207 ~~~~~~~~a~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~ 249 (437)
.++-.....+ ..++.+++++++.-++++......-.+.+-|+.
T Consensus 411 ~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~n 457 (744)
T KOG0741 411 KIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMN 457 (744)
T ss_pred EHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 71445566517877776989999985578626789999988889888
No 56
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.26 E-value=4.4e-09 Score=78.32 Aligned_cols=46 Identities=28% Similarity=0.564 Sum_probs=40.0
Q ss_pred HHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 62030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 16 LDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 16 Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
|=.-|||||+|.+++..|+-| +.|+||+|||||||++|||++|..|
T Consensus 29 lidqVIGQe~Av~~i~~Aa~q----------------rrhvlliG~PGtGKSmlakam~elL 74 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQ----------------RRHVMLIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred CCCCCCCHHHHHHHHHHHHHH----------------HCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 233245719999999999984----------------3738986899987999999999757
No 57
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=99.26 E-value=7.2e-11 Score=89.88 Aligned_cols=69 Identities=26% Similarity=0.469 Sum_probs=57.2
Q ss_pred HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECC
Q ss_conf 8620304868999999999987788640864444665668669967988868999999999707877971434101212
Q gi|254780829|r 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 (437)
Q Consensus 15 ~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~g 93 (437)
.|++| |||++-|+.|.+++. ... .|.| .+=.+||.||||.|||-||.=+|.|++|-.-+.+|.-+-=.|
T Consensus 2 ~L~eF-iGQ~~vk~~L~l~I~-------AAk-~R~e-~LDH~LL~GPPGLGKTTLA~IiA~Emg~~l~iTsGP~L~kPg 70 (305)
T TIGR00635 2 LLAEF-IGQEKVKEQLQLFIE-------AAK-MRQE-ALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPG 70 (305)
T ss_pred CCHHC-CCCHHHHHHHHHHHH-------HHH-HCCC-CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHH
T ss_conf 80110-582889999999999-------998-2489-734166317568746789999999838932674067554757
No 58
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=99.26 E-value=1.8e-10 Score=87.29 Aligned_cols=245 Identities=21% Similarity=0.284 Sum_probs=145.1
Q ss_pred HHHHHHCEECHHHHHHH----HHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 99862030486899999----9999987788640864444665668-669967988868999999999707877971434
Q gi|254780829|r 13 VSELDRYIIGQQDAKRA----VAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87 (437)
Q Consensus 13 ~~~Ld~~VvGQ~~AKk~----lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT 87 (437)
.+-||+-=-|=++-|.. |||-----.||..- ..++....-+ =+.|+||||||||=|||.+|+-||=+||..+=
T Consensus 406 ~~~LD~DHYGL~~VK~RIlEYlAV~qllemrrkkk-PkL~~~~~GpqIlClvGPPGVGKTSlg~SIA~ALnRkFvR~Sl- 483 (941)
T TIGR00763 406 KEILDEDHYGLKKVKERILEYLAVQQLLEMRRKKK-PKLRGKMKGPQILCLVGPPGVGKTSLGKSIAKALNRKFVRFSL- 483 (941)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEE-
T ss_conf 99831678888773034135888989998764036-4447788887678720726954222789999996880499952-
Q ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 10121223431013467888765212789985654988886888755553114321100466898898616888854998
Q gi|254780829|r 88 KFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDI 167 (437)
Q Consensus 88 ~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i 167 (437)
| |....| +|
T Consensus 484 -----G------------------G~~DeA------------------------------------------------EI 492 (941)
T TIGR00763 484 -----G------------------GVRDEA------------------------------------------------EI 492 (941)
T ss_pred -----C------------------CCEEHH------------------------------------------------HC
T ss_conf -----6------------------722031------------------------------------------------12
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 75355455443346676663210001101001354322100000102355332788863031011123678887532221
Q gi|254780829|r 168 EVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIV 247 (437)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 247 (437)
+.|.++=-||.++-..+...+ +--.+-..
T Consensus 493 --------------------------------------rGHRRTYvGAMPGriiQ~lk~-------------~~t~NPl~ 521 (941)
T TIGR00763 493 --------------------------------------RGHRRTYVGAMPGRIIQGLKK-------------AKTKNPLI 521 (941)
T ss_pred --------------------------------------CCCCCCCCCCCHHHHHHHHHH-------------CCCCCCEE
T ss_conf --------------------------------------786432034672578999876-------------04158806
Q ss_pred HCCCCCHHC-CCCCCCCCCCCCCCHHHHHH-HCCCCCCCCC--CCC--CCCCCHHH--HHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 002221001-35766565433210122343-2046652211--246--66420246--6401675422112125543345
Q gi|254780829|r 248 FLDEFDKIV-ARDSGNGIGVSREGVQRDLL-PLVEGSSVST--KYG--SINTDHIL--FIASGAFHVSRPADLLPEIQGR 319 (437)
Q Consensus 248 f~~~~~ki~-~~~~~~~~~~~~~g~~~~~~-~~~e~~~v~~--~~~--~~~~~~~~--~i~~~~~~~~k~~glipE~~GR 319 (437)
.+||+||+. .+++.. |++ ..++ .|.++.+..- +|- ....+.+. |||-... .+.||+.+-=
T Consensus 522 LlDEIDK~~~~~~~~G--DPa-----SALLEvLDPEQN~~F~DHYldvp~DLS~V~CyFi~TAN~-----~d~IP~PLLD 589 (941)
T TIGR00763 522 LLDEIDKIGLKSSFRG--DPA-----SALLEVLDPEQNNAFSDHYLDVPFDLSKVLCYFIATANS-----IDTIPRPLLD 589 (941)
T ss_pred EEEEEEEECCCCCCCC--CHH-----HHHHHHCCHHHCCCCCCCCCCCCCCHHHHHHHEEECCCC-----CCCCCCCCCC
T ss_conf 8620220016788655--637-----888641286436042553002340042002100024475-----7677722137
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 12688615542467888764346889999999987519689984249999999999840400123724679999998677
Q gi|254780829|r 320 FPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLED 399 (437)
Q Consensus 320 ~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d 399 (437)
---+..++--+.++...|. +.=|+.|..+.=+...=+|+|||+||..|.+.-. | +-|=|.|..-+|+++--
T Consensus 590 RMEvI~lsGY~~~EK~~IA---~~yLiP~~~~~~GL~~~~l~~~d~al~~lI~~Yt-R-----EaGVRNL~r~I~~i~RK 660 (941)
T TIGR00763 590 RMEVIELSGYTEEEKLEIA---KKYLIPKALEDHGLKPDELKISDEALLLLIKYYT-R-----EAGVRNLERQIEKICRK 660 (941)
T ss_pred CEEEEECCCCCHHHHHHHH---HHCCHHHHHHHHCCCCCCEEECHHHHHHHHHHHH-H-----HHCCHHHHHHHHHHHHH
T ss_conf 4024523888767899999---8547136798708881322126899999998751-3-----20213389999999999
Q ss_pred HHC
Q ss_conf 621
Q gi|254780829|r 400 ISF 402 (437)
Q Consensus 400 ~~f 402 (437)
+.+
T Consensus 661 ~A~ 663 (941)
T TIGR00763 661 AAV 663 (941)
T ss_pred HHH
T ss_conf 999
No 59
>TIGR00368 TIGR00368 Mg chelatase homolog; InterPro: IPR004482 This family of bacterial proteins are variously described as 'hypothetical protein yifB', 'competence protein', 'hypothetical protein' or 'Mg chelatase-related protein'. These proteins are a subset of the magnesium chelatase, ChlI subunit family and either belong to or show significant homology to the non-peptidase homologs of the MEROPS peptidase family S16 (lon protease family, clan SF), IPR001984 from INTERPRO. .
Probab=99.24 E-value=3.8e-12 Score=98.19 Aligned_cols=44 Identities=48% Similarity=0.721 Sum_probs=39.8
Q ss_pred HCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 18 RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 18 ~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
+-|+||++|||+|-+|+ ++ --|+||+||||||||+||+++-+.|
T Consensus 194 ~dv~GQ~~akRAleIAa----------AG------GHNlll~GPPGsGKTmla~r~~giL 237 (505)
T TIGR00368 194 KDVKGQQHAKRALEIAA----------AG------GHNLLLLGPPGSGKTMLASRLQGIL 237 (505)
T ss_pred CCCCCHHHCCHHHHHHH----------HC------CCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 22545101102677753----------13------5643767824962689998751057
No 60
>KOG0739 consensus
Probab=99.22 E-value=7.1e-12 Score=96.38 Aligned_cols=149 Identities=17% Similarity=0.206 Sum_probs=89.9
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970787797143410121223431
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN 98 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~D 98 (437)
-|-|-|-||.+|--||---.|=-++-.+.| ..=++|||.|||||||.+|||++|-++|--||+++.|.++-- +.|+.
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR--~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK-WmGES 210 (439)
T KOG0739 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKR--KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WMGES 210 (439)
T ss_pred HHCCCHHHHHHHHHHEEECCCCHHHHCCCC--CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHH-HHCCH
T ss_conf 301405689998754350002535415887--754257886799975779999987414770687301788998-73217
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CCHHHHHHHHHHHHCCC-CCCEEEEEECCCCCC
Q ss_conf 013467888765212789985654988886888755553114321--10046689889861688-885499875355455
Q gi|254780829|r 99 VEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTA--TSNTREVFRKKLRDGEI-SDKEIDIEVADTSSD 175 (437)
Q Consensus 99 Ves~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~-~~~~i~i~~~~~~~~ 175 (437)
|-. +.+.|..+.+.++.+||+++++.....| .++.+ ...-...++.++..-.- ++...+...++.+..
T Consensus 211 -EkL---VknLFemARe~kPSIIFiDEiDslcg~r-----~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~ 281 (439)
T KOG0739 211 -EKL---VKNLFEMARENKPSIIFIDEIDSLCGSR-----SENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWV 281 (439)
T ss_pred -HHH---HHHHHHHHHHCCCCEEEEEHHHHHCCCC-----CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH
T ss_conf -999---9999999873499479863444432688-----7771177777777888764066658886489723788436
Q ss_pred CCCC
Q ss_conf 4433
Q gi|254780829|r 176 ISNF 179 (437)
Q Consensus 176 ~~~~ 179 (437)
++..
T Consensus 282 LDsA 285 (439)
T KOG0739 282 LDSA 285 (439)
T ss_pred HHHH
T ss_conf 7799
No 61
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.21 E-value=4e-11 Score=91.55 Aligned_cols=62 Identities=40% Similarity=0.612 Sum_probs=51.5
Q ss_pred ECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEECCCCC
Q ss_conf 486899999999998778864086444466566866996798886899999999970---7877971434101212234
Q gi|254780829|r 21 IGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEIGYVG 96 (437)
Q Consensus 21 vGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~gyvG 96 (437)
.||+..++.+..+++.. .++|+||.||||||||.||+++|+++ +.||+.++++++.+..+..
T Consensus 1 ~~~~~~~~~l~~~~~~~--------------~~~~ill~GppGtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (151)
T cd00009 1 VGQEEAIEALREALELP--------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVA 65 (151)
T ss_pred CCCHHHHHHHHHHHHCC--------------CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEHHHCCHHHHHH
T ss_conf 98579999999998187--------------998089989999886599999999712137982785477704677775
No 62
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.17 E-value=2.6e-10 Score=86.25 Aligned_cols=77 Identities=26% Similarity=0.497 Sum_probs=60.2
Q ss_pred CCCCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 76768889999986203048689999999999877886408644446656686699679888689999999997078779
Q gi|254780829|r 3 LTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82 (437)
Q Consensus 3 ~~~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~ 82 (437)
...++-|+ +|++| |||++.|+.+.|.+.---+|.. ..-.+||.||||.|||-||.-+|.+++|.+-
T Consensus 16 ~e~~lRP~----~l~ef-iGQ~~vk~~L~ifI~AAk~r~e---------~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 16 IERSLRPK----TLDEF-IGQEKVKEQLQIFIKAAKKRGE---------ALDHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred HHHCCCCC----CHHHH-CCHHHHHHHHHHHHHHHHHCCC---------CCCEEEEECCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 43035865----48885-1839999999999999984498---------7674786479987688899999998567737
Q ss_pred EEECCCEEECC
Q ss_conf 71434101212
Q gi|254780829|r 83 KVEVTKFTEIG 93 (437)
Q Consensus 83 ~~daT~ftE~g 93 (437)
+.+|.-+--.|
T Consensus 82 ~tsGp~leK~g 92 (332)
T COG2255 82 ITSGPALEKPG 92 (332)
T ss_pred ECCCCCCCCHH
T ss_conf 63662015726
No 63
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.11 E-value=4.1e-09 Score=78.53 Aligned_cols=43 Identities=35% Similarity=0.578 Sum_probs=38.9
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 30486899999999998778864086444466566--866996798886899999999970
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP--KNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~p--sNiLLiGPtGtGKTlLAktLA~~l 77 (437)
-||||++||++|-++.- .| .|+||.||+|||||.|||+|+..|
T Consensus 9 ~IvGQe~~K~AL~laav----------------~p~~ggvLi~G~~GtgKStlaR~l~~iL 53 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAI----------------DPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHCCCHHHHHHHHHHHC----------------CCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 76493999999999772----------------7898608997899865999999999728
No 64
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.08 E-value=2.1e-09 Score=80.43 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=74.0
Q ss_pred CCCCCHHHHHHHHHHCEECHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 676888999998620304868999---99999998778864086444466566866996798886899999999970787
Q gi|254780829|r 4 TFNFSPREIVSELDRYIIGQQDAK---RAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 4 ~~~ltP~~i~~~Ld~~VvGQ~~AK---k~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
+.-|.|+.+ |+| |||++-- +.+-.+|- . . ...+.+|.||||||||-||+.||+..+.+
T Consensus 15 A~rmRP~~l----de~-vGQ~HLlg~~~~lrr~v~-------~-~------~l~SmIl~GPPG~GKTTlA~liA~~~~~~ 75 (436)
T COG2256 15 AERLRPKSL----DEV-VGQEHLLGEGKPLRRAVE-------A-G------HLHSMILWGPPGTGKTTLARLIAGTTNAA 75 (436)
T ss_pred HHHHCCCCH----HHH-CCHHHHHCCCCHHHHHHH-------C-C------CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 777097778----785-571866189943899996-------4-9------98605777899988889999998761776
Q ss_pred EEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 79714341012122343101346788876521278998----56549888868887555531143211004668988986
Q gi|254780829|r 81 FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESR----RDEVREQASINAEERILDALVGKTATSNTREVFRKKLR 156 (437)
Q Consensus 81 F~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (437)
|...+|++. .+.++......+.+... ...|.++ .-..+..+|...
T Consensus 76 f~~~sAv~~------------gvkdlr~i~e~a~~~~~~gr~tiLflDE-------------------IHRfnK~QQD~l 124 (436)
T COG2256 76 FEALSAVTS------------GVKDLREIIEEARKNRLLGRRTILFLDE-------------------IHRFNKAQQDAL 124 (436)
T ss_pred EEEECCCCC------------CHHHHHHHHHHHHHHHHCCCCEEEEEEH-------------------HHHCCHHHHHHH
T ss_conf 699515234------------6799999999999987258834998722-------------------533374456551
Q ss_pred HCCCCCCEEEEEECCC
Q ss_conf 1688885499875355
Q gi|254780829|r 157 DGEISDKEIDIEVADT 172 (437)
Q Consensus 157 ~~~~~~~~i~i~~~~~ 172 (437)
++..++..|....+.+
T Consensus 125 Lp~vE~G~iilIGATT 140 (436)
T COG2256 125 LPHVENGTIILIGATT 140 (436)
T ss_pred HHHHCCCEEEEEECCC
T ss_conf 0332488689996267
No 65
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.04 E-value=7.3e-10 Score=83.35 Aligned_cols=70 Identities=34% Similarity=0.544 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 88999998620304868999999999987788640864444665668669967988868999999999707877971434
Q gi|254780829|r 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87 (437)
Q Consensus 8 tP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT 87 (437)
....+...+.++++|+++++..+-.|+. ...++||.||||||||+|||++|+.++.||+.+.||
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~----------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t 77 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALL----------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCT 77 (329)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHH----------------CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 6666665225655266999999999998----------------599778779898777999999999838981899568
Q ss_pred CEEECC
Q ss_conf 101212
Q gi|254780829|r 88 KFTEIG 93 (437)
Q Consensus 88 ~ftE~g 93 (437)
..+...
T Consensus 78 ~~l~p~ 83 (329)
T COG0714 78 PDLLPS 83 (329)
T ss_pred CCCCHH
T ss_conf 998888
No 66
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.04 E-value=5.3e-10 Score=84.26 Aligned_cols=72 Identities=28% Similarity=0.479 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCCEEE
Q ss_conf 688899999862030486899999999998778864086444466566866996798886899999999970--787797
Q gi|254780829|r 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA--GAPFIK 83 (437)
Q Consensus 6 ~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l--~VPF~~ 83 (437)
|+.|+.+- .=.|||.+|.++..|.| +=++... .--++||+.||||||||-||=.+|++| +|||+.
T Consensus 31 ng~~k~~~----dG~VGQ~~AReAaGvIv----~mik~gk-----~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~ 97 (450)
T COG1224 31 NGKAKFIG----DGLVGQEEAREAAGVIV----KMIKQGK-----MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVA 97 (450)
T ss_pred CCCEEECC----CCCCCHHHHHHHHHHHH----HHHHHCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 89874768----86112498887625999----9997176-----66617999789997688999999998589998215
Q ss_pred EECCCEE
Q ss_conf 1434101
Q gi|254780829|r 84 VEVTKFT 90 (437)
Q Consensus 84 ~daT~ft 90 (437)
.+||++-
T Consensus 98 isgsEiY 104 (450)
T COG1224 98 ISGSEIY 104 (450)
T ss_pred ECCCEEE
T ss_conf 0133223
No 67
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=99.01 E-value=1.1e-09 Score=82.22 Aligned_cols=72 Identities=21% Similarity=0.407 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCCEE
Q ss_conf 7688899999862030486899999999998778864086444466566866996798886899999999970--78779
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA--GAPFI 82 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l--~VPF~ 82 (437)
.+++|+.+- +=.|||.+|+++..+.|- =++.. .+--+.+||.||||||||-||-++|++| ++||.
T Consensus 15 ~~~~~~~~~----~GlVGQ~~AReAagiiv~----mIk~~-----K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~ 81 (395)
T pfam06068 15 EDGEARYVS----EGLVGQEKAREAAGVIVE----MIKEG-----KIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFC 81 (395)
T ss_pred CCCCEEECC----CCCCCHHHHHHHHHHHHH----HHHHC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 888883645----775454999999899999----99727-----75773899877999888999999999748799734
Q ss_pred EEECCCE
Q ss_conf 7143410
Q gi|254780829|r 83 KVEVTKF 89 (437)
Q Consensus 83 ~~daT~f 89 (437)
...||+.
T Consensus 82 ~i~gSEv 88 (395)
T pfam06068 82 PISGSEV 88 (395)
T ss_pred EEEHHEE
T ss_conf 5001112
No 68
>KOG2028 consensus
Probab=99.00 E-value=8.6e-09 Score=76.42 Aligned_cols=70 Identities=29% Similarity=0.506 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC---E
Q ss_conf 7688899999862030486899999999998778864086444466566866996798886899999999970787---7
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP---F 81 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP---F 81 (437)
.-|.|+ .||.| |||+++.-. .--+++-. . ..-+|| ++|-||||||||-|||-||.-..-| |
T Consensus 130 ermRPk----tL~dy-vGQ~hlv~q-~gllrs~i------e---q~~ipS-mIlWGppG~GKTtlArlia~tsk~~Syrf 193 (554)
T KOG2028 130 ERMRPK----TLDDY-VGQSHLVGQ-DGLLRSLI------E---QNRIPS-MILWGPPGTGKTTLARLIASTSKKHSYRF 193 (554)
T ss_pred HHCCCC----HHHHH-CCHHHHCCC-CHHHHHHH------H---CCCCCC-EEEECCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 541843----68775-053441483-26899998------7---088870-58866998765889999986057774279
Q ss_pred EEEECCCEE
Q ss_conf 971434101
Q gi|254780829|r 82 IKVEVTKFT 90 (437)
Q Consensus 82 ~~~daT~ft 90 (437)
+..+||+-+
T Consensus 194 velSAt~a~ 202 (554)
T KOG2028 194 VELSATNAK 202 (554)
T ss_pred EEEECCCCC
T ss_conf 997414566
No 69
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.96 E-value=1e-08 Score=75.87 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=40.2
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||++.+++|.-|+-+ - .+|.-.|+.||.|||||-.||.+|+.++-
T Consensus 17 dvvgQ~~v~~~L~n~i~~----~---------~i~hayLf~GprG~GKTs~Ari~akalnc 64 (541)
T PRK05563 17 DVVGQEHITTTLKNQIIN----N---------RIAHAYLFCGTRGTGKTSTAKIFAKAVNC 64 (541)
T ss_pred HHCCCHHHHHHHHHHHHC----C---------CCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 624849999999999984----9---------93204530387995899999999999579
No 70
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.93 E-value=2.4e-08 Score=73.47 Aligned_cols=49 Identities=29% Similarity=0.377 Sum_probs=41.8
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
-||||+..+++|.-|+- ..-++...|+.||.|||||-+||.+|+.++-+
T Consensus 18 dvVGQ~~vv~~L~nai~-------------~~ri~HAyLF~GprGtGKTT~ArilAkaLnC~ 66 (462)
T PRK06305 18 EILGQDAVVTVLKNALR-------------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (462)
T ss_pred HHCCCHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 60490999999999998-------------49976234303899859999999999996799
No 71
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.1e-09 Score=82.14 Aligned_cols=44 Identities=48% Similarity=0.700 Sum_probs=39.6
Q ss_pred HCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 18 RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 18 ~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
+-|+||++|||++-+|.- --.|+||+||||||||+||+++.+.|
T Consensus 179 ~DV~GQ~~AKrAleiAAA----------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 179 KDVKGQEQAKRALEIAAA----------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred HHHCCCHHHHHHHHHHHH----------------CCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 664384999999999984----------------38867875699886567642310259
No 72
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.91 E-value=1.1e-08 Score=75.65 Aligned_cols=48 Identities=25% Similarity=0.448 Sum_probs=39.9
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||+.++++|.-|+.+ -+ .+.-.|+.||.|||||-+|+.+|+.++-
T Consensus 17 dvvGQe~vv~~L~nai~~----~r---------l~HAyLFsGprG~GKTt~ArilAk~LnC 64 (560)
T PRK06647 17 SLEGQDFVVETLKHSIEK----NK---------IANAYIFSGPRGVGKTSSARAFARCLNC 64 (560)
T ss_pred HHCCCHHHHHHHHHHHHC----CC---------CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 403949999999999974----99---------7743663289987899999999999659
No 73
>KOG0732 consensus
Probab=98.90 E-value=2e-09 Score=80.57 Aligned_cols=206 Identities=14% Similarity=0.025 Sum_probs=126.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970-----7877971434101212234310134678887652127899856549888
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA-----GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQA 126 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l-----~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~ 126 (437)
.|.++|+-||||||||++|++||..+ .+-|+.-++..--- .|||+. =+.|...+.-+.+..+.+|+.++|
T Consensus 298 pPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ls-kwvgEa----ERqlrllFeeA~k~qPSIIffdeI 372 (1080)
T KOG0732 298 PPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLS-KWVGEA----ERQLRLLFEEAQKTQPSIIFFDEI 372 (1080)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHC-CCCCCH----HHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 986323028998725688886665405411020244314844332-544757----788998898874448517730555
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 86888755553114321100466898898616888854998753554554433466766632100011010013543221
Q gi|254780829|r 127 SINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFDIPGGASVGILNLSELFSKVMGSGRKK 206 (437)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (437)
+...-.+....- --.......++.+|.+......++.+..++++...+++.. +++.+++-.....+....+....
T Consensus 373 dGlapvrSskqE---qih~SIvSTLLaLmdGldsRgqVvvigATnRpda~dpaLR--RPgrfdref~f~lp~~~ar~~Il 447 (1080)
T KOG0732 373 DGLAPVRSSKQE---QIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAIDPALR--RPGRFDREFYFPLPDVDARAKIL 447 (1080)
T ss_pred CCCCCCCCCHHH---HHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHC--CCCCCCEEEEEECCCHHHHHHHH
T ss_conf 664656536677---7445677778876047777786589715678332465442--88666525750378667888999
Q ss_pred EE-EEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCC
Q ss_conf 00-00010235533278886303101112367888753222100222100135766565433
Q gi|254780829|r 207 KI-RMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGIGVS 267 (437)
Q Consensus 207 ~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~~~~ 267 (437)
.+ ...-......-.....++.+.+..+++....+.+++.+++......+.........+..
T Consensus 448 ~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~ 509 (1080)
T KOG0732 448 DIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYSSSDKLLIDVA 509 (1080)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCH
T ss_conf 87515777887778999998862340057899888887554304565814222432134501
No 74
>pfam01078 Mg_chelatase Magnesium chelatase, subunit ChlI. Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Probab=98.89 E-value=1.5e-09 Score=81.42 Aligned_cols=43 Identities=42% Similarity=0.689 Sum_probs=38.6
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 30486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
-|+||+.|||++-+|+- -.-|+||+||||||||+|||+++..+
T Consensus 4 di~GQ~~akrAl~iAaa----------------G~H~lLl~GpPG~GKTmlA~rl~~iL 46 (207)
T pfam01078 4 DVKGQEQAKRALEIAAA----------------GGHNLLMIGPPGSGKTMLAKRLPGIL 46 (207)
T ss_pred HHCCCHHHHHHHHHHHC----------------CCCCEEEECCCCCCHHHHHHHHHCCC
T ss_conf 86385999999999854----------------78758978899802999997630148
No 75
>TIGR02881 spore_V_K stage V sporulation protein K; InterPro: IPR014232 Proteins in this entry include the stage V sporulation protein K (SpoVK), a close homologue of the Rubisco expression protein CbbX (IPR000470 from INTERPRO), and are members of an ATPase family associated with various cellular activities. These proteins are strictly limited to bacterial endospore-forming species, but are not found universally among members of this group; they are missing from the Clostridium species..
Probab=98.84 E-value=1.8e-07 Score=67.85 Aligned_cols=73 Identities=16% Similarity=0.385 Sum_probs=51.7
Q ss_pred CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHC-CCCCCC-HHHH
Q ss_conf 25543345126886155424678887643468899999999875196899842499999999998404-001237-2467
Q gi|254780829|r 312 LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNS-TVGDIG-ARRL 389 (437)
Q Consensus 312 lipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t-~~~~~G-AR~L 389 (437)
+=|++.-|||+...|..-+.++|..|... ++++-.. .||.+|...+-+.=..... ...+.| ||--
T Consensus 161 ~NPGL~SRFPi~i~FPdY~~eeL~~Ia~~----m~~~ReY---------~Lt~~A~~~lr~~l~~~~~~~~~~~sNaR~v 227 (261)
T TIGR02881 161 LNPGLRSRFPISIDFPDYTVEELMEIAER----MVKEREY---------KLTEEAKWKLREHLAKVDQLSSREFSNARYV 227 (261)
T ss_pred CCCCCCCCCCCEEECCCCCHHHHHHHHHH----HHHHHHH---------CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 07797776650541889988899999999----9864642---------2578899999999741244421005762012
Q ss_pred HHHHHHHH
Q ss_conf 99999986
Q gi|254780829|r 390 QTVMERVL 397 (437)
Q Consensus 390 rtI~E~~l 397 (437)
|.|+|+..
T Consensus 228 RN~iE~AI 235 (261)
T TIGR02881 228 RNIIEKAI 235 (261)
T ss_pred HHHHHHHH
T ss_conf 42889999
No 76
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=2.3e-08 Score=73.65 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=40.4
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||+.+++.|.-|+- + .-.|.-.|+.||.|||||-+|+.+|+.++-
T Consensus 15 evIGQe~iv~~L~nAi~----~---------~Rl~HAYLFsGPrGvGKTt~ArifAkaLnC 62 (523)
T PRK08451 15 ELIGQESVSKTLSLALD----N---------NRLAHAYLFSGLRGSGKTSSARIFSRALVC 62 (523)
T ss_pred HCCCCHHHHHHHHHHHH----C---------CCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 40494999999999998----5---------996715875789986889999999999759
No 77
>PRK07270 DNA polymerase III subunits gamma and tau; Validated
Probab=98.82 E-value=3.4e-08 Score=72.55 Aligned_cols=49 Identities=24% Similarity=0.486 Sum_probs=40.5
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
-||||+++++.|.-|+- +-+ +|.-.|+.||.|||||.+|+.+|+.++-|
T Consensus 16 dvvGQe~i~~~L~nal~----~~r---------i~HAyLF~GP~GtGKts~ArifAkaLnC~ 64 (557)
T PRK07270 16 EMVGQEVVATTLKQAVE----SGK---------ISHAYLFSGPRGTGKTSAAKIFAKAMNCP 64 (557)
T ss_pred HHCCHHHHHHHHHHHHH----CCC---------CCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 71481999999999998----599---------54044210899868999999999995799
No 78
>PRK06674 DNA polymerase III subunits gamma and tau; Validated
Probab=98.81 E-value=4.1e-08 Score=72.00 Aligned_cols=49 Identities=27% Similarity=0.498 Sum_probs=41.2
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
-||||+..++.|.-|+.+. -++.-.|+.||.|||||.+||.+|+.++-.
T Consensus 17 dvvGQ~~v~~~L~nai~~~-------------ri~HAyLF~GprGtGKts~Ari~AkaLnC~ 65 (563)
T PRK06674 17 DVVGQEHVTKTLQNALLQE-------------KVSHAYLFSGPRGTGKTSIAKVFAKAVNCE 65 (563)
T ss_pred HHCCHHHHHHHHHHHHHCC-------------CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 5248099999999999849-------------965034312899868999999999985799
No 79
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.79 E-value=2.8e-07 Score=66.65 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=41.0
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||+.++++|.-|+. +-+ .+.-.|+.||.|||||-+||.+|+.++-
T Consensus 19 EVIGQe~Vv~tL~nAI~----~gR---------IaHAYLF~GPRGvGKTT~ARIfAKaLNC 66 (718)
T PRK07133 19 EIKGQDHIIETLKNIIK----SGK---------ISHAYLFSGPHGTGKTSVAKIFANALNC 66 (718)
T ss_pred HHCCCHHHHHHHHHHHH----CCC---------CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 42285999999999997----499---------7505862389986889999999999679
No 80
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.79 E-value=6.2e-09 Score=77.34 Aligned_cols=43 Identities=37% Similarity=0.676 Sum_probs=38.4
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 30486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
-|.||+.||+++-+|.- ---|+||+||||||||+||+++...+
T Consensus 192 dv~Gq~~akraleIAAA----------------GgHnlLl~GpPG~GKTMlA~rlp~IL 234 (506)
T PRK09862 192 DVVGQEQGKRGLEITAA----------------GGHNLLLIGPPGTGKTMLASRINGLL 234 (506)
T ss_pred HHCCCHHHHHHHHHHHC----------------CCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf 53697999999999744----------------68865987699945989997751238
No 81
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=1.3e-07 Score=68.68 Aligned_cols=48 Identities=29% Similarity=0.535 Sum_probs=40.6
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||+.+++.|.-|+- +-+ .|...|+.||.|||||-+|+.+|+.++-
T Consensus 17 eIIGQe~iv~~L~nAI~----~~R---------iaHAYLFsGPrGvGKTTlArifAkaLnC 64 (613)
T PRK05896 17 QIIGQELIKKILVNAIL----NNK---------LTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (613)
T ss_pred HHCCCHHHHHHHHHHHH----CCC---------CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 52382999999999998----499---------7622775589984889999999999669
No 82
>PRK04195 replication factor C large subunit; Provisional
Probab=98.75 E-value=2.6e-08 Score=73.25 Aligned_cols=62 Identities=29% Similarity=0.528 Sum_probs=49.4
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEE
Q ss_conf 04868999999999987788640864444665668669967988868999999999707877971434101
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ft 90 (437)
||||+.+++.|.--+.+ |. +....++.+||.||||||||-+|++||+++|...+-..||...
T Consensus 16 ivg~~~~v~~l~~Wl~~-w~--------~g~~~~k~lLL~GPpGvGKTT~a~~lAk~~g~~viElNASD~R 77 (403)
T PRK04195 16 VVGNEKAKKQLREWIES-WL--------KGKPPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR 77 (403)
T ss_pred HHCCHHHHHHHHHHHHH-HH--------CCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 85889999999999999-87--------3996574699889399879999999999849985997710114
No 83
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.75 E-value=4.5e-06 Score=58.75 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=50.8
Q ss_pred HHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECCCEEE
Q ss_conf 2030486899999999998778864086444466566866996798886899999999970-----78779714341012
Q gi|254780829|r 17 DRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA-----GAPFIKVEVTKFTE 91 (437)
Q Consensus 17 d~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l-----~VPF~~~daT~ftE 91 (437)
=..++|-|+-.+.++-++....+ .-.|+|+++.||||||||..+|.+.+.+ ++-|+.++|..+.-
T Consensus 29 P~~l~~Re~Ei~~l~~~l~~~l~----------g~~~~n~~I~G~pGTGKT~~vk~v~~~l~~~~~~~~~vyINc~~~~t 98 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALR----------GSRPSNVLILGPPGTGKTTTVKKVFEELEEAALKVVYVYINCQIDRT 98 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHC----------CCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 99898859999999999999975----------99998479988999989999999999999746896599996966898
Q ss_pred C
Q ss_conf 1
Q gi|254780829|r 92 I 92 (437)
Q Consensus 92 ~ 92 (437)
.
T Consensus 99 ~ 99 (394)
T PRK00411 99 R 99 (394)
T ss_pred H
T ss_conf 9
No 84
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.75 E-value=1.6e-08 Score=74.60 Aligned_cols=48 Identities=31% Similarity=0.609 Sum_probs=42.6
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCEEEECCCCCCHHHHHHHHHHHH-------CCCEE
Q ss_conf 30486899999999998778864086444466566--866996798886899999999970-------78779
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP--KNILLVGPTGVGKTAISRRLARLA-------GAPFI 82 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~p--sNiLLiGPtGtGKTlLAktLA~~l-------~VPF~ 82 (437)
.||||+++|++|-.+. +.| .|+|+.||+|||||.++|+||..+ +-||-
T Consensus 13 aIvGQe~~k~aLll~a----------------v~p~iGgVLi~G~~GtgKStlvRala~lLP~i~~v~~~~f~ 69 (347)
T CHL00081 13 AIVGQEEMKLALLLNV----------------IDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKNDPFN 69 (347)
T ss_pred HHCCHHHHHHHHHHHH----------------CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 6538499999999982----------------57887869987899874999999999857874220688767
No 85
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=98.74 E-value=1.6e-07 Score=68.10 Aligned_cols=48 Identities=29% Similarity=0.562 Sum_probs=41.5
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 0486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
|||||.-.++|+-|+- .-+ +.--.||.||=|||||=+||=+|+.+|=+
T Consensus 16 ~~GQ~~iv~tL~NAi~----~~r---------i~HAYLF~GpRGtGKTS~ARIfAKaLNC~ 63 (363)
T TIGR02397 16 VIGQEHIVKTLKNAIK----NGR---------IAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (363)
T ss_pred CCCCHHHHHHHHHHHH----HCC---------CCCEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf 2351799999999997----189---------66234502859976355899999986588
No 86
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.69 E-value=8e-07 Score=63.65 Aligned_cols=48 Identities=31% Similarity=0.504 Sum_probs=41.0
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||+..++.|.-|+.+. .++.-.||.||-|||||-+||.||+.||-
T Consensus 16 eviGQe~v~~~L~~Ai~~g-------------ri~HAYLFsGprG~GKTt~ARilAkaLNC 63 (775)
T PRK07764 16 EVVGQEHVTEPLSTALDSG-------------RINHAYLFSGPRGCGKTSSARILARSLNC 63 (775)
T ss_pred HHCCCHHHHHHHHHHHHCC-------------CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 6228599999999999819-------------97633762378887888999999999668
No 87
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.68 E-value=4.4e-08 Score=71.84 Aligned_cols=47 Identities=32% Similarity=0.497 Sum_probs=38.0
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 0486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
||||+++++.|.-++-+ .-.| ++||.||||||||-+|+++|+++.-+
T Consensus 17 vvGq~~i~~~L~~~~~~-------------~~~p-hlLf~GPpG~GKTt~A~~lA~~l~~~ 63 (337)
T PRK12402 17 ILGQESVVDHLSALAAS-------------GNLP-HLVVYGPSGSGKTAAVRALARELYGD 63 (337)
T ss_pred HCCCHHHHHHHHHHHHC-------------CCCC-EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 03979999999999977-------------9987-69888929848999999999996799
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=2.1e-07 Score=67.38 Aligned_cols=48 Identities=35% Similarity=0.533 Sum_probs=40.3
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||+..+++|.-|+- .-+ +..-.||.||-|||||-+||-+|+.+|-
T Consensus 17 e~vGQ~~v~~~L~nal~----~~r---------l~haylf~G~rGvGKTt~Ari~Ak~lNC 64 (704)
T PRK08691 17 DLVGQEHVVKALQNALD----EGR---------LHHAYLLTGTRGVGKTTIARILAKSLNC 64 (704)
T ss_pred HHCCCHHHHHHHHHHHH----HCC---------CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 64186999999999998----199---------7523750278987888999999999679
No 89
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.65 E-value=1.8e-07 Score=67.91 Aligned_cols=49 Identities=33% Similarity=0.526 Sum_probs=41.0
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
-||||+.-.++|.-|+-+ .+ +..-.||.||-|||||-+||-+||.+|-.
T Consensus 17 e~vGQ~~v~~~l~nal~~----~r---------l~haylf~G~rGvGKTt~aRi~Ak~lnC~ 65 (816)
T PRK07003 17 SLVGQEHVVRALTHALDG----GR---------LHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (816)
T ss_pred HHCCCHHHHHHHHHHHHC----CC---------CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 623849999999999970----98---------63147511789888889999999986789
No 90
>KOG2004 consensus
Probab=98.61 E-value=1.1e-06 Score=62.67 Aligned_cols=53 Identities=34% Similarity=0.646 Sum_probs=39.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC--------CCCCCCHHHHHHHHHHHH
Q ss_conf 866996798886899999999970787797143410121--------223431013467888765
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI--------GYVGRNVEQIIRDLVDVA 110 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~--------gyvG~DVes~i~~l~~~a 110 (437)
+=+-|+||||+|||=+||.+|+-+|=-||..+---.|.+ -||| +|..|+.++-
T Consensus 439 kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVG----AMPGkiIq~L 499 (906)
T KOG2004 439 KILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVG----AMPGKIIQCL 499 (906)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHCCCCEEEEC----CCCHHHHHHH
T ss_conf 379986899877321899999984874699853663427764254211001----4884899999
No 91
>KOG0742 consensus
Probab=98.60 E-value=3.3e-07 Score=66.11 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=69.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 866996798886899999999970787797143410121223431013467888765212789-9856549888868887
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRE-SRRDEVREQASINAEE 132 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~-a~~~i~~~~~~~~~~~ 132 (437)
.||||.||||||||+.||-||+..+.-+...-+-..-.+| .+.-+-|++|. +|..+. ..-..|+++++...-+
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG---~qaVTkiH~lF---DWakkS~rGLllFIDEADAFLce 458 (630)
T KOG0742 385 RNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG---AQAVTKIHKLF---DWAKKSRRGLLLFIDEADAFLCE 458 (630)
T ss_pred HHEEEECCCCCCHHHHHHHHHHHCCCCEEHHCCCCCCCCH---HHHHHHHHHHH---HHHHHCCCCEEEEEHHHHHHHHH
T ss_conf 4003247999860499999988528741001378755521---78899999987---88751566449986116789987
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEE-EEECCCCC
Q ss_conf 5555311432110046689889861688885499-87535545
Q gi|254780829|r 133 RILDALVGKTATSNTREVFRKKLRDGEISDKEID-IEVADTSS 174 (437)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~-i~~~~~~~ 174 (437)
|-. ...++.....+...|-...-..+.+. +..++.+.
T Consensus 459 Rnk-----tymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742 459 RNK-----TYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred HCC-----CCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
T ss_conf 520-----10258899999889876256554268996058832
No 92
>pfam07726 AAA_3 ATPase family associated with various cellular activities (AAA). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.59 E-value=5e-08 Score=71.44 Aligned_cols=37 Identities=35% Similarity=0.497 Sum_probs=34.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf 6699679888689999999997078779714341012
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE 91 (437)
||||.||||||||.||+++|+.++.||+.+.+|+-++
T Consensus 1 hVLL~GppG~GKT~l~~~lA~~~~~~~~~i~~~~~~~ 37 (131)
T pfam07726 1 HVLLEGVPGLAKTLLARTLARSLGLDFRRIQFTPDLL 37 (131)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9878989987699999999999599816888337767
No 93
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=8.1e-07 Score=63.62 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=72.4
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC------------------
Q ss_conf 30486899999999998778864086444466566866996798886899999999970787------------------
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP------------------ 80 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP------------------ 80 (437)
-+|||+...++|.-|+- ..-++...||.||.|||||-.||-+|+.++-.
T Consensus 22 ~liGQ~~~~~~l~n~i~-------------~~~~~~aylf~G~rG~GKTt~Ari~ak~lnc~~~~~~~~~~~~c~~c~~c 88 (507)
T PRK06645 22 ELQGQEVLVKVLSYTIL-------------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEKCTNC 88 (507)
T ss_pred HHCCCHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
T ss_conf 62393999999999997-------------39966347745879978899999999996799988889988888887678
Q ss_pred ----------EEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf ----------7971434101212234310134678887652127899856549888868887555531143211004668
Q gi|254780829|r 81 ----------FIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREV 150 (437)
Q Consensus 81 ----------F~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (437)
.+-.||.+-| | |+.+. .+.+.+.+.+-.+...+++ ++.+ |.-..+..+.
T Consensus 89 ~~i~~~~~~dv~EiDaas~~--g-----v~~ir-~l~~~~~~~p~~~~~kv~i---idE~----------hmls~~a~na 147 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAASKT--S-----VDDIR-RIIESAEYKPLQGKHKIFI---IDEV----------HMLSKGAFNA 147 (507)
T ss_pred HHHHCCCCCCEEEEECCCCC--C-----HHHHH-HHHHHCCCCCCCCCEEEEE---ECCH----------HHCCHHHHHH
T ss_conf 99865899985996378888--8-----89999-9986355178767435899---5214----------2248999999
Q ss_pred HHHHHHHCCCCCCEEEEEECCCCCCCCCC
Q ss_conf 98898616888854998753554554433
Q gi|254780829|r 151 FRKKLRDGEISDKEIDIEVADTSSDISNF 179 (437)
Q Consensus 151 ~~~~l~~~~~~~~~i~i~~~~~~~~~~~~ 179 (437)
++..|..+...... +..+......+..
T Consensus 148 llktlEepp~~~~F--i~atte~~kip~t 174 (507)
T PRK06645 148 LLKTLEEPPPHIIF--IFATTEVQKIPAT 174 (507)
T ss_pred HHHHHHCCCCCEEE--EEECCCHHHCCHH
T ss_conf 99974278644389--9974853648378
No 94
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=3.5e-07 Score=65.95 Aligned_cols=48 Identities=35% Similarity=0.548 Sum_probs=40.6
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||+...++|+-|+.+ ..+..-.||.||-|||||-+||-+|+.+|-
T Consensus 17 ~~vGQ~~v~~~l~na~~~-------------~r~~haylf~G~rGvGKTt~ari~Ak~lnc 64 (721)
T PRK12323 17 TLVGQEHVVRALTHALEQ-------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (721)
T ss_pred HHCCCHHHHHHHHHHHHC-------------CCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 532859999999999971-------------997544750279988898999999999768
No 95
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=3.4e-06 Score=59.60 Aligned_cols=49 Identities=33% Similarity=0.399 Sum_probs=40.8
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
-||||+...++|.-|+.+ . .+..-.||.||-|||||-+||-+|+.+|-.
T Consensus 17 ~~vGQ~~v~~~l~na~~~----------~---r~~haylf~G~rG~GKtt~ari~ak~lnc~ 65 (643)
T PRK07994 17 DVVGQEHVLTALANGLSL----------G---RIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (643)
T ss_pred HHCCCHHHHHHHHHHHHH----------C---CCCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 653879999999999982----------9---866348745899888889999999996799
No 96
>PRK08853 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=7.2e-07 Score=63.96 Aligned_cols=48 Identities=31% Similarity=0.435 Sum_probs=40.3
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||+...++|.-|+- .- .+..-.||.||-|||||-+||-+|+.+|-
T Consensus 17 e~vGQ~~v~~~L~nal~----~~---------rl~haylf~G~rGvGKTt~ARi~Ak~lNC 64 (717)
T PRK08853 17 EVVGQSHVLTALENALA----HN---------RLHHAYLFSGTRGVGKTTIGRLFAKGLNC 64 (717)
T ss_pred HHCCCHHHHHHHHHHHH----CC---------CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 51385999999999997----09---------97405761088988898999999998678
No 97
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.00011 Score=49.70 Aligned_cols=74 Identities=19% Similarity=0.291 Sum_probs=54.3
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC-----EEEEECCCEEECCC
Q ss_conf 0486899999999998778864086444466566866996798886899999999970787-----79714341012122
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP-----FIKVEVTKFTEIGY 94 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP-----F~~~daT~ftE~gy 94 (437)
+.+-|+=...++..+..-+ ..-.|.|++++||||||||..+|-+++++.-+ ++++.|..+....
T Consensus 19 l~~Re~ei~~l~~~l~~~~----------~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~- 87 (366)
T COG1474 19 LPHREEEINQLASFLAPAL----------RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY- 87 (366)
T ss_pred CCCHHHHHHHHHHHHHHHH----------CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHH-
T ss_conf 1034889999999999985----------58998607998899987328999999999733156757999513078787-
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 3431013467888765
Q gi|254780829|r 95 VGRNVEQIIRDLVDVA 110 (437)
Q Consensus 95 vG~DVes~i~~l~~~a 110 (437)
.+..+++...
T Consensus 88 ------~i~~~i~~~~ 97 (366)
T COG1474 88 ------QVLSKILNKL 97 (366)
T ss_pred ------HHHHHHHHHH
T ss_conf ------9999999982
No 98
>pfam07728 AAA_5 AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Probab=98.45 E-value=1.3e-07 Score=68.79 Aligned_cols=38 Identities=39% Similarity=0.642 Sum_probs=33.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCEEEC
Q ss_conf 66996798886899999999970-787797143410121
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLA-GAPFIKVEVTKFTEI 92 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l-~VPF~~~daT~ftE~ 92 (437)
||||+||||||||.||+.+|+.+ +.|++.+.++..+..
T Consensus 1 ~vll~Gp~G~GKT~la~~la~~l~~~~~~~i~~~~~~~~ 39 (139)
T pfam07728 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTE 39 (139)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCH
T ss_conf 989998997569999999999807983111214655652
No 99
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.43 E-value=5.2e-07 Score=64.85 Aligned_cols=49 Identities=33% Similarity=0.555 Sum_probs=37.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHH
Q ss_conf 6686699679888689999999997078779714341012122343101346
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQII 103 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i 103 (437)
.++||.|+|++|||||-++|.||+.++.||+-.| .+.|. ..|..+..+.
T Consensus 3 ~kknI~LiG~mGsGKstvgk~LA~~l~~~fiD~D--~~Ie~-~~g~si~~If 51 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD--QEIEK-RTGADIGWVF 51 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECH--HHHHH-HHCCCHHHHH
T ss_conf 8882898899999889999999999699968780--99999-9798999999
No 100
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.39 E-value=9.6e-07 Score=63.13 Aligned_cols=49 Identities=31% Similarity=0.515 Sum_probs=38.6
Q ss_pred HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 8620304868999999999987788640864444665668669967988868999999999707
Q gi|254780829|r 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 15 ~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
.||+ |+||++++..|.-.+-+ .-. .|+|+.||||||||-+|+++|+++.
T Consensus 14 ~l~d-i~g~~~~~~~L~~~i~~-------------~~~-phlLf~GppG~GKTt~a~~la~~l~ 62 (318)
T PRK00440 14 SLDE-VVGQEEIVERLKSFVKE-------------KNM-PHLLFAGPPGTGKTTAALALARELY 62 (318)
T ss_pred CHHH-HCCCHHHHHHHHHHHHC-------------CCC-CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8999-41969999999999987-------------998-6698889599889999999999976
No 101
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=98.38 E-value=6e-08 Score=70.95 Aligned_cols=82 Identities=34% Similarity=0.555 Sum_probs=63.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCC--CCCCCCHHHHHHHCCCCCCCCC-----------
Q ss_conf 278886303101112367888753222100222100135766565--4332101223432046652211-----------
Q gi|254780829|r 220 MRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGNGI--GVSREGVQRDLLPLVEGSSVST----------- 286 (437)
Q Consensus 220 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~~~--~~~~~g~~~~~~~~~e~~~v~~----------- 286 (437)
..+.+.|++....+ ..-...-||+||||+|||+.++.+.++ |+|+||+|+.++.++||+..++
T Consensus 198 VENIL~~Llq~ad~----DV~kA~kGIiYIDEIDKIaRkSEN~SITRDVSGEGVQQALLKi~EGTvA~vPPqGGRKHP~~ 273 (452)
T TIGR00382 198 VENILLKLLQAADY----DVEKAQKGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPQQ 273 (452)
T ss_pred HHHHHHHHHHHCCC----CHHHHCCCEEEEECCCCHHHHCCCCEEEEEECCCHHHHHHHHHHHCCEEEECCCCCCCCCCC
T ss_conf 88999999874145----52452785089842231012157780112217554999999876032343175448868865
Q ss_pred CCCCCCCCHHHHHHCCCCC
Q ss_conf 2466642024664016754
Q gi|254780829|r 287 KYGSINTDHILFIASGAFH 305 (437)
Q Consensus 287 ~~~~~~~~~~~~i~~~~~~ 305 (437)
...++.|..|+|||.|||.
T Consensus 274 ~~iqiDTs~ILFICGGAF~ 292 (452)
T TIGR00382 274 EFIQIDTSNILFICGGAFV 292 (452)
T ss_pred CEEEECCCCEEEEECCHHH
T ss_conf 7688647640011054344
No 102
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.36 E-value=1.4e-05 Score=55.60 Aligned_cols=90 Identities=21% Similarity=0.285 Sum_probs=56.4
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCC-HHHHHH
Q ss_conf 5543345126886155424678887643468899999999875196899842499999999998404001237-246799
Q gi|254780829|r 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIG-ARRLQT 391 (437)
Q Consensus 313 ipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~G-AR~Lrt 391 (437)
.+.+--|+...+.|.||+.++...=+. -+.+. +..+-...||++|++.|.+.+- | .|....
T Consensus 176 ~~~l~qRI~~~~~L~pl~~eet~~YI~-------~RL~~--AG~~~~~~Ft~~A~~~I~~~S~---------G~PR~IN~ 237 (269)
T TIGR03015 176 LQQLRQRIIASCHLGPLDREETREYIE-------HRLER--AGNRDAPVFSEGAFDAIHRFSR---------GIPRLINI 237 (269)
T ss_pred HHHHHHCEEEEEEECCCCHHHHHHHHH-------HHHHH--CCCCCCCCCCHHHHHHHHHHCC---------CCHHHHHH
T ss_conf 254555076799847999899999999-------99986--6999999859999999999869---------90089999
Q ss_pred HHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHH
Q ss_conf 99998677621275687768998599999899999
Q gi|254780829|r 392 VMERVLEDISFSASDLQEKTVVIDAEYVRLHIGDF 426 (437)
Q Consensus 392 I~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~l 426 (437)
+..+.|... -..+- -.||++.|++.+..+
T Consensus 238 Lc~~aLl~a----~~~~~--~~I~~~~v~~~~~el 266 (269)
T TIGR03015 238 LCDRLLLSA----FLEEK--REIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHHHH----HHHCC--CCCCHHHHHHHHHHH
T ss_conf 999999999----99488--867999999999976
No 103
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.34 E-value=7.2e-07 Score=63.95 Aligned_cols=36 Identities=42% Similarity=0.630 Sum_probs=32.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 566866996798886899999999970787797143
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
+.++||.|+|++|||||-++|.||+.++.||+-.|.
T Consensus 2 ~~~~nI~liG~~GsGKTtvgk~LA~~L~~~fiD~D~ 37 (175)
T PRK00131 2 LKGPNIVLIGMMGAGKSTIGRLLAKRLGYEFIDTDH 37 (175)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCH
T ss_conf 999808988899999899999999995969023988
No 104
>PRK08770 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=1.9e-05 Score=54.75 Aligned_cols=48 Identities=33% Similarity=0.502 Sum_probs=40.7
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||+...++|+-|+- .. .+..-.||.|+-|||||-+||-+||.||-
T Consensus 17 ~~~gq~~~~~~l~~~~~----~~---------~~~~a~lf~g~rg~gkt~~ar~~a~~lnc 64 (663)
T PRK08770 17 ELVGQEHVVRALSNALD----SG---------RVHHAFLFTGTRGVGKTTIARIFAKSLNC 64 (663)
T ss_pred HHCCCHHHHHHHHHHHH----CC---------CCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 52285999999999997----09---------97404762279988888999999998678
No 105
>PRK05648 DNA polymerase III subunits gamma and tau; Reviewed
Probab=98.34 E-value=6.8e-06 Score=57.61 Aligned_cols=48 Identities=35% Similarity=0.544 Sum_probs=40.3
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||+...++|+-|+-+ -+ +..-.||.||-|||||-+||-+||.+|-
T Consensus 17 ~~~gq~~~~~~l~~~~~~----~~---------~~~a~l~~g~rg~gkt~~ar~~ak~lnc 64 (705)
T PRK05648 17 EMVGQTHVLKALINALDN----QR---------LHHAYLFTGTRGVGKTTIARIIAKCLNC 64 (705)
T ss_pred HHCCHHHHHHHHHHHHHC----CC---------CCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 632819999999999970----98---------6304650078988898999999998677
No 106
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=98.33 E-value=2.4e-06 Score=60.57 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 68889999986203048689999999999877886408644446656686699679888689999999997078779714
Q gi|254780829|r 6 NFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85 (437)
Q Consensus 6 ~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~d 85 (437)
......+..-|++.+.||.-|++++--||..|+.- +... -|-=+-|-|||||||+++++-||+-+ |-.-.
T Consensus 13 ~~~~~~Le~~L~~~lfGQhla~~~v~~al~~~l~~---~~p~----KpLVlSfHG~tGtGKn~vs~liA~~L---y~~G~ 82 (127)
T pfam06309 13 SFNYHGLERDLARRLFGQHLVKQLVVRSVKGHWEN---PKPR----KPLVLSFHGWTGTGKNFVAEIIADNL---YRDGL 82 (127)
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC---CCCC----CCEEEEECCCCCCCHHHHHHHHHHHH---HHCCC
T ss_conf 88779999999875347798999999999999748---9999----97488701899987989999999998---75434
Q ss_pred CCCEEEC
Q ss_conf 3410121
Q gi|254780829|r 86 VTKFTEI 92 (437)
Q Consensus 86 aT~ftE~ 92 (437)
-|+|.-.
T Consensus 83 ~S~~Vh~ 89 (127)
T pfam06309 83 RSPYVHH 89 (127)
T ss_pred CCCCEEE
T ss_conf 7875688
No 107
>pfam00308 Bac_DnaA Bacterial dnaA protein.
Probab=98.33 E-value=2.7e-05 Score=53.69 Aligned_cols=66 Identities=17% Similarity=0.302 Sum_probs=46.1
Q ss_pred CCCCCCCCC--EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 255433451--268861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r 312 LLPEIQGRF--PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 (437)
Q Consensus 312 lipE~~GR~--p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L 389 (437)
+.|.+..|+ -..+.+++++.+++..||.. .+...|+. .++++++.|++.--. -.|.|
T Consensus 147 ~~~dL~SRL~~g~~~~i~~pdd~~~~~iL~~-----------~a~~r~l~--l~~~v~~yl~~r~~R--------~~r~L 205 (219)
T pfam00308 147 FEDRLRSRFEWGLIIAIEPPDLETRLAILRK-----------KAEEENIN--IPNEVLNFIAQRITD--------NVREL 205 (219)
T ss_pred CCHHHHHHHHCCEEEECCCCCHHHHHHHHHH-----------HHHHCCCC--CCHHHHHHHHHHCCC--------CHHHH
T ss_conf 3277999986875661169999999999999-----------99984999--999999999984279--------89999
Q ss_pred HHHHHHHHH
Q ss_conf 999999867
Q gi|254780829|r 390 QTVMERVLE 398 (437)
Q Consensus 390 rtI~E~~l~ 398 (437)
-++++++-.
T Consensus 206 ~~~L~~L~~ 214 (219)
T pfam00308 206 EGALNRLLA 214 (219)
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 108
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.28 E-value=1.4e-06 Score=62.03 Aligned_cols=58 Identities=29% Similarity=0.555 Sum_probs=40.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6699679888689999999997078779714341012122343101346788876521278
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVR 115 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~ 115 (437)
||.|+|++|||||-++|.||+.++.||+-.| .+.|. +.|..+..+....-..+-.+.|
T Consensus 1 nI~LiG~~G~GKstigk~la~~l~~~fiD~D--~~Ie~-~~g~si~eif~~~Ge~~FR~~E 58 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQ-RAGMSIPEIFAEEGEEGFRELE 58 (154)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECC--HHHHH-HHCCCHHHHHHHCCHHHHHHHH
T ss_conf 9899889999889999999999798979685--99999-9499999999874938789999
No 109
>TIGR02902 spore_lonB ATP-dependent protease LonB; InterPro: IPR014251 This entry represents LonB, a paralog of the ATP-dependent protease La (LonA, IPR004815 from INTERPRO). LonB proteins are unassigned peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SJ) and are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore during sporulation, under control of sigmaF . The lonB gene, despite being located immediately upstream of lonA, was shown to be monocistronic. LonB appears to be involved in the post-translation control of sigmaH, but lonB mutation did not produce an obvious sporulation defect under the conditions tested . Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and these are excluded from this entry. .
Probab=98.28 E-value=1.8e-06 Score=61.29 Aligned_cols=203 Identities=25% Similarity=0.360 Sum_probs=119.8
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH----------CCCEEEEECCC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970----------78779714341
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA----------GAPFIKVEVTK 88 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l----------~VPF~~~daT~ 88 (437)
=|||||+--|+|-=|+| .++ |-.|+++||||+|||==||-+=+++ ++-|+=+||||
T Consensus 66 EIiGQe~GI~ALKAALC---------GPN-----PQHVIiYGPPGVGKTAAARLVLeeAKk~~~SPFke~A~FVEiDATT 131 (532)
T TIGR02902 66 EIIGQEEGIKALKAALC---------GPN-----PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEEAAFVEIDATT 131 (532)
T ss_pred CCCCCHHHHHHHHHHCC---------CCC-----CCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCC
T ss_conf 25673556899998606---------868-----9638987886961789999999986508753789886689850510
Q ss_pred EE--ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 01--2122343101346788876521278998565498888688875555311432110046689889861688885499
Q gi|254780829|r 89 FT--EIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEID 166 (437)
Q Consensus 89 ft--E~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 166 (437)
.. |=| | +
T Consensus 132 ~RFDERG---------------------------I-------------A------------------------------- 140 (532)
T TIGR02902 132 ARFDERG---------------------------I-------------A------------------------------- 140 (532)
T ss_pred CCCCCCC---------------------------C-------------C-------------------------------
T ss_conf 3602146---------------------------6-------------6-------------------------------
Q ss_pred EEECCCCCCCCCCCCCC-CCCCCCCCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 87535545544334667-66632100011010013543221000001023553327888630310111236788875322
Q gi|254780829|r 167 IEVADTSSDISNFDIPG-GASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYG 245 (437)
Q Consensus 167 i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 245 (437)
+++.+..+.+ --+.|..++...+.+..|-. .-.|-|
T Consensus 141 -------DPLIGSVHDPIYQGAGplG~AGIPQPK~GAV------------------------------------T~AHGG 177 (532)
T TIGR02902 141 -------DPLIGSVHDPIYQGAGPLGVAGIPQPKPGAV------------------------------------TKAHGG 177 (532)
T ss_pred -------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------------------------CCCCCC
T ss_conf -------6567761585333765457885575877763------------------------------------202586
Q ss_pred HHHCCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCC---CCCCCCCCHHHHH----HCCCCCCCCCCC-------
Q ss_conf 21002221001357665654332101223432046652211---2466642024664----016754221121-------
Q gi|254780829|r 246 IVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVST---KYGSINTDHILFI----ASGAFHVSRPAD------- 311 (437)
Q Consensus 246 ~~f~~~~~ki~~~~~~~~~~~~~~g~~~~~~~~~e~~~v~~---~~~~~~~~~~~~i----~~~~~~~~k~~g------- 311 (437)
+.|+||+-....-.+ .+++...|.-+|.. +|-+..+..-.+| ..|-+.|..--|
T Consensus 178 vLFIDEIGELHP~~M------------NKLLKVLEDRKVFLdSAYY~s~~pniP~hI~dIFqnGlPADFRLiGATTR~Pe 245 (532)
T TIGR02902 178 VLFIDEIGELHPVQM------------NKLLKVLEDRKVFLDSAYYSSEDPNIPSHIRDIFQNGLPADFRLIGATTRNPE 245 (532)
T ss_pred EEEECCCCCCCHHHH------------HHHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCC
T ss_conf 551212466582435------------31411330222000012358777865427899720678734012133369877
Q ss_pred -CCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHH
Q ss_conf -2554334512688615542467888764346889999999987519689984249999999999
Q gi|254780829|r 312 -LLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAV 375 (437)
Q Consensus 312 -lipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~ 375 (437)
++|=+=-|= +=+=|.+|..|++.+|-.. +.+.|.+....+|++-|++.|.
T Consensus 246 EIpPAlRSRC-~EIFFR~L~~EEi~~iAk~-------------AaeKIg~~l~~~Al~~I~~Ya~ 296 (532)
T TIGR02902 246 EIPPALRSRC-VEIFFRPLLKEEIKEIAKN-------------AAEKIGLNLEKEALDLIAKYAS 296 (532)
T ss_pred CCCHHHHCCC-EEEEECCCCHHHHHHHHHH-------------HHHHCCCCCCHHHHHHHHHHHC
T ss_conf 6783465052-2677168887899999876-------------5653046547547999998740
No 110
>PRK13946 shikimate kinase; Provisional
Probab=98.27 E-value=1e-06 Score=62.95 Aligned_cols=40 Identities=38% Similarity=0.764 Sum_probs=35.4
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 4466566866996798886899999999970787797143
Q gi|254780829|r 47 LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 47 ~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
....+-++||.|+|++|||||-+.|.||+.++.||+-.|.
T Consensus 14 ~~~~l~kknIvLIG~mGsGKStvGk~LA~~L~~~fiD~D~ 53 (195)
T PRK13946 14 IRAALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 53 (195)
T ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 9998589958998999998899999999997979898859
No 111
>KOG0735 consensus
Probab=98.26 E-value=3.3e-06 Score=59.65 Aligned_cols=76 Identities=25% Similarity=0.203 Sum_probs=60.4
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHH----CCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6566866996798886899999999970----787797143410121223431013467888765212789985654988
Q gi|254780829|r 50 ELMPKNILLVGPTGVGKTAISRRLARLA----GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQ 125 (437)
Q Consensus 50 e~~psNiLLiGPtGtGKTlLAktLA~~l----~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~ 125 (437)
-+.+-||||-||+|||||-|+|++++++ ...|.++||+++-..- ++.+-..+...+.....-+|..|+-++
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~-----~e~iQk~l~~vfse~~~~~PSiIvLDd 502 (952)
T KOG0735 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS-----LEKIQKFLNNVFSEALWYAPSIIVLDD 502 (952)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECHHCCCHH-----HHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 334661898679987776999999987515650699997522104204-----899999999999998863780899705
Q ss_pred HHHHH
Q ss_conf 88688
Q gi|254780829|r 126 ASINA 130 (437)
Q Consensus 126 ~~~~~ 130 (437)
.+..+
T Consensus 503 ld~l~ 507 (952)
T KOG0735 503 LDCLA 507 (952)
T ss_pred HHHHH
T ss_conf 03540
No 112
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.26 E-value=1.8e-07 Score=67.82 Aligned_cols=66 Identities=41% Similarity=0.657 Sum_probs=56.1
Q ss_pred HHHHHHHCCCCCHHCCCCCCC--CCCCCCCCHHHHHHHCCCCCCCCC-----------CCCCCCCCHHHHHHCCCCCCC
Q ss_conf 532221002221001357665--654332101223432046652211-----------246664202466401675422
Q gi|254780829|r 242 ENYGIVFLDEFDKIVARDSGN--GIGVSREGVQRDLLPLVEGSSVST-----------KYGSINTDHILFIASGAFHVS 307 (437)
Q Consensus 242 ~~~~~~f~~~~~ki~~~~~~~--~~~~~~~g~~~~~~~~~e~~~v~~-----------~~~~~~~~~~~~i~~~~~~~~ 307 (437)
...|++|+||+|||+.++.+. ..|+|.+|+|+.++.++|++.+.+ .|..+.|.+++||+.|||.-+
T Consensus 173 Ae~GIV~IDEIDKIarks~~~s~trDVSgEGVQqaLLkiiEGt~v~vp~~ggrkhp~~~~~~idT~nILFI~gGAF~GL 251 (411)
T PRK05342 173 AQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGL 251 (411)
T ss_pred HHCCEEEEEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCH
T ss_conf 8368288850234542478888877765124899999987587141188877778776516761471799911553358
No 113
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=2.2e-06 Score=60.83 Aligned_cols=46 Identities=24% Similarity=0.476 Sum_probs=39.0
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 30486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
-||||+++++.|.-|+- ..-.|.-.|+.||.|+|||.+|+.+|+.+
T Consensus 5 ~iiGq~~i~~~L~~~i~-------------~~rl~HAyLF~Gp~G~GK~~~A~~~A~~l 50 (313)
T PRK05564 5 TIIGHENIKNRIDNSII-------------KGKFSHASLIVGEDGIGKSILAKEIANKI 50 (313)
T ss_pred HCCCHHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 32682999999999998-------------79987504327999850999999999998
No 114
>PRK08116 hypothetical protein; Validated
Probab=98.25 E-value=2.3e-06 Score=60.72 Aligned_cols=73 Identities=23% Similarity=0.412 Sum_probs=44.5
Q ss_pred CCCHHH-HHHHHHHCEE--CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CC
Q ss_conf 688899-9998620304--86899999999998778864086444466566866996798886899999999970---78
Q gi|254780829|r 6 NFSPRE-IVSELDRYII--GQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GA 79 (437)
Q Consensus 6 ~ltP~~-i~~~Ld~~Vv--GQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~V 79 (437)
++.|+. ...-.+.|++ ||..|++ +|....++|....- ...|+||.||||||||+||-++|..+ +.
T Consensus 67 s~i~~~f~~~tFeN~~~~~~~~~a~~-~a~~Y~~~f~~~~~--------~~~GLll~G~~GtGKThLa~aIa~~l~~~g~ 137 (262)
T PRK08116 67 SLLDEKFRNSTFENWLFRKGSEKAYK-VAVKYVKKFEEMKK--------ESVGLLLWGSPGNGKTYLAAAIANELIEKGV 137 (262)
T ss_pred CCCCHHHHHCCCCCCCCCCCHHHHHH-HHHHHHHHHHHHCC--------CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 59998898192225568952599999-99999998987364--------6861899898999899999999999998799
Q ss_pred CEEEEECC
Q ss_conf 77971434
Q gi|254780829|r 80 PFIKVEVT 87 (437)
Q Consensus 80 PF~~~daT 87 (437)
|-..+..+
T Consensus 138 ~V~~~~~~ 145 (262)
T PRK08116 138 PVVFVNVP 145 (262)
T ss_pred EEEEEEHH
T ss_conf 39998899
No 115
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=2.7e-06 Score=60.26 Aligned_cols=47 Identities=30% Similarity=0.509 Sum_probs=40.8
Q ss_pred HCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 18 RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 18 ~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
..||||+++++.+.-|+. ..-.|...|+.||.|+|||.+|.++|+.+
T Consensus 17 ~~liGqe~~~~~L~~a~~-------------~grl~HA~Lf~Gp~GiGK~tlA~~~A~~l 63 (363)
T PRK07471 17 TALFGHAAAEAALLDAYR-------------SGRLHHAWLIGGPQGIGKATLAYRMARFL 63 (363)
T ss_pred CCCCCHHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 731681999999999998-------------59976458767999818899999999998
No 116
>KOG1942 consensus
Probab=98.22 E-value=1.7e-06 Score=61.55 Aligned_cols=64 Identities=25% Similarity=0.434 Sum_probs=48.2
Q ss_pred HHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCCEEEEECCCE
Q ss_conf 2030486899999999998778864086444466566866996798886899999999970--787797143410
Q gi|254780829|r 17 DRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA--GAPFIKVEVTKF 89 (437)
Q Consensus 17 d~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l--~VPF~~~daT~f 89 (437)
-.-+|||+.|..+-.+-|- - ++.+. .--+.+|+-||||||||-||=++|++| +|||....+|+.
T Consensus 37 ~~g~vGQ~~AReAagiivd-l---ik~Kk-----maGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEv 102 (456)
T KOG1942 37 AAGFVGQENAREAAGIIVD-L---IKSKK-----MAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEV 102 (456)
T ss_pred CCCCCCCHHHHHHHHHHHH-H---HHHHH-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 4451152666655108999-9---98663-----26727997369987656899999997479998566641055
No 117
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.21 E-value=1.9e-06 Score=61.25 Aligned_cols=35 Identities=37% Similarity=0.724 Sum_probs=32.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 66866996798886899999999970787797143
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
+++||.|+|++|||||-++|.||+.++.||+-.|.
T Consensus 1 M~~~I~LiG~mGsGKstiGk~LA~~L~~~fiD~D~ 35 (172)
T PRK03731 1 MTQPLFLVGPRGCGKTTVGMALAQALGYRFVDTDL 35 (172)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
T ss_conf 99988998899998899999999985999797869
No 118
>PRK13947 shikimate kinase; Provisional
Probab=98.21 E-value=1.6e-06 Score=61.61 Aligned_cols=33 Identities=36% Similarity=0.617 Sum_probs=31.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 866996798886899999999970787797143
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
+||.|+|++|||||-+.|.||+.++.||+-.|.
T Consensus 2 knI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~ 34 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKKVATTLSFGFIDTDK 34 (171)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 858997999998899999999997969898749
No 119
>PRK08181 transposase; Validated
Probab=98.18 E-value=1.5e-06 Score=61.92 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=29.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf 66866996798886899999999970---787797143410121
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI 92 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~ 92 (437)
.+.|++|+||||||||.||.+|+..+ |-.-....++.+.+.
T Consensus 105 ~~~Nvil~Gp~GtGKThLA~Alg~~A~~~G~~V~f~~~~~L~~~ 148 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHH
T ss_conf 48708998999987889999999999987993999789999999
No 120
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=98.18 E-value=2.5e-06 Score=60.40 Aligned_cols=61 Identities=26% Similarity=0.483 Sum_probs=44.8
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf 0486899999999998778864086444466566866996798886899999999970---787797143410121
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI 92 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~ 92 (437)
+||+..+-+.+---+ +|... .+.+||+.|++||||+++||++-... +-||+.++|+.+.+.
T Consensus 1 lIG~S~~m~~l~~~i----~~~a~--------~~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~ 64 (168)
T pfam00158 1 LIGESPAMQEVLELA----KRVAP--------TDATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEE 64 (168)
T ss_pred CEECCHHHHHHHHHH----HHHHC--------CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf 973899999999999----99958--------89988998999888899999999852435688312567899877
No 121
>PRK13948 shikimate kinase; Provisional
Probab=98.16 E-value=3e-06 Score=59.94 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=33.2
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 6566866996798886899999999970787797143
Q gi|254780829|r 50 ELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 50 e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
+-.++||.|+|++|||||-+.|.||+.++.||+-.|.
T Consensus 7 p~~~~~IvLIG~mGsGKStiGk~LA~~l~~~fiD~D~ 43 (182)
T PRK13948 7 PRPATFVALAGFMGTGKSRIGWELSRALALHFVDTDK 43 (182)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 9999818988999998899999999996959888849
No 122
>PRK06526 transposase; Provisional
Probab=98.15 E-value=1.9e-06 Score=61.16 Aligned_cols=40 Identities=25% Similarity=0.460 Sum_probs=29.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEE
Q ss_conf 66866996798886899999999970---78779714341012
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE 91 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE 91 (437)
.+.||+++||||||||.||.+|+..+ |-+-....++++.+
T Consensus 97 ~~~Nvil~G~~GtGKThLA~Alg~~A~~~G~~v~f~~~~~L~~ 139 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA 139 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
T ss_conf 5887899899998689999999999998699679987799999
No 123
>pfam10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein. This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.
Probab=98.15 E-value=1.5e-05 Score=55.35 Aligned_cols=79 Identities=27% Similarity=0.369 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC---
Q ss_conf 42467888764346889999999987519689984249999999999840400123724679999998677621275---
Q gi|254780829|r 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS--- 405 (437)
Q Consensus 329 L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe~p--- 405 (437)
|+++++.+|... .+.+..+.++..+++|.|++++++.|++.++..+ +|||+|+.++++.++++..+..
T Consensus 1 L~~~~l~~Iv~~----~l~~l~~rl~~~~i~l~~~~~~~~~i~~~~~~~~-----~GAR~l~r~I~~~i~~~la~~il~~ 71 (89)
T pfam10431 1 LSKEELRQIVDL----QLKRLQKRLAERGITLELTDAAKDWLAEKGYDPE-----YGARPLRRAIQREIEDPLAEEILSG 71 (89)
T ss_pred CCHHHHHHHHHH----HHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988999999999----9999999999789079986899999998356756-----7947899999999999999999849
Q ss_pred -CCCCCEEEECH
Q ss_conf -68776899859
Q gi|254780829|r 406 -DLQEKTVVIDA 416 (437)
Q Consensus 406 -~~~~~~v~Id~ 416 (437)
-..+..+.|+-
T Consensus 72 ~~~~~~~i~i~~ 83 (89)
T pfam10431 72 ELKEGDTVRVDV 83 (89)
T ss_pred CCCCCCEEEEEE
T ss_conf 899979999971
No 124
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=3.5e-06 Score=59.51 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=40.7
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 304868999999999987788640864-4446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||+++++.|--|+.+ .|.-... ..-..-...-.|+.||.|||||.+|+++|+.++-
T Consensus 6 ~ivGQe~v~~~L~~A~~~--~R~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~C 65 (395)
T PRK07940 6 RLVGQDAVVAELRAAARA--ARADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQC 65 (395)
T ss_pred HHCCCHHHHHHHHHHHHH--CCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 315929999999999983--634344333346876603763689987889999999999669
No 125
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=4.8e-06 Score=58.62 Aligned_cols=47 Identities=28% Similarity=0.531 Sum_probs=40.4
Q ss_pred HCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 18 RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 18 ~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
..+|||+++++.+.-|+. ..-.|...|+.||.|+|||.+|.++|+.+
T Consensus 23 ~~liGq~~~~~~L~~a~~-------------~gRl~HA~Lf~GP~GiGKaTlA~~~A~~L 69 (352)
T PRK09112 23 NRLFGHEEARAFLAQAYR-------------EGRLHHALLFEGPEGIGKATLAFHLANHI 69 (352)
T ss_pred HHHCCHHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 462786999999999998-------------49965246535899808999999999998
No 126
>PRK13949 shikimate kinase; Provisional
Probab=98.14 E-value=3e-06 Score=59.96 Aligned_cols=33 Identities=42% Similarity=0.708 Sum_probs=31.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 866996798886899999999970787797143
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
+||.|+|++|||||-+.|.||+.++.||+-.|.
T Consensus 2 k~I~LiG~mGsGKstiGk~La~~l~~~fiD~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEECCH
T ss_conf 838997999998899999999995999797849
No 127
>PRK09183 transposase/IS protein; Provisional
Probab=98.13 E-value=1.9e-06 Score=61.19 Aligned_cols=26 Identities=46% Similarity=0.698 Sum_probs=24.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
.+.||+|+||||||||.||-+|+..+
T Consensus 100 ~~~Nvil~G~~GtGKThLA~Alg~~A 125 (258)
T PRK09183 100 RNENIVLLGPSGVGKTHLAIALGYEA 125 (258)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 58867998999986899999999999
No 128
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=98.12 E-value=4e-06 Score=59.11 Aligned_cols=75 Identities=23% Similarity=0.369 Sum_probs=50.9
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCEEEECCCCCCHHHHHHHHHHHH-------CCC-E--EEEECC
Q ss_conf 3048689999999999877886408644446-6566866996798886899999999970-------787-7--971434
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGKTAISRRLARLA-------GAP-F--IKVEVT 87 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~-e~~psNiLLiGPtGtGKTlLAktLA~~l-------~VP-F--~~~daT 87 (437)
.++|=|+=-+.++-++. - .-. .-.|+||++.||||||||+.+|.+.+.| |++ | +.+.|.
T Consensus 18 ~i~hRdeqI~~l~~~L~-----~-----~l~PG~~P~Ni~iYGkTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~ 87 (383)
T TIGR02928 18 RIVHRDEQIEELAKALR-----P-----ILRPGSRPSNIFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQ 87 (383)
T ss_pred CCCCCHHHHHHHHHHHH-----H-----HHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 46686789999999988-----7-----5067489872588788898788999999999999862269971589997785
Q ss_pred CEEECCCCCCCHHHHHHHHHHHH
Q ss_conf 10121223431013467888765
Q gi|254780829|r 88 KFTEIGYVGRNVEQIIRDLVDVA 110 (437)
Q Consensus 88 ~ftE~gyvG~DVes~i~~l~~~a 110 (437)
.+.=- -+++.+|+...
T Consensus 88 ~~~T~-------y~~~~~L~~~l 103 (383)
T TIGR02928 88 ILDTS-------YQVLVELANQL 103 (383)
T ss_pred CCCCH-------HHHHHHHHHHH
T ss_conf 46846-------99999999985
No 129
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.11 E-value=2.6e-06 Score=60.38 Aligned_cols=27 Identities=59% Similarity=0.891 Sum_probs=25.2
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 566866996798886899999999970
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
..|+||+|.||||||||.|||.+|..+
T Consensus 192 ktKknvIL~G~pGtGKT~lAk~lA~~l 218 (459)
T PRK11331 192 TIKKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 458827965899988789999999997
No 130
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.08 E-value=0.00019 Score=48.29 Aligned_cols=98 Identities=20% Similarity=0.323 Sum_probs=55.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCC-------EEEEECCCEE-ECCCCCCCHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 66866996798886899999999970---787-------7971434101-212234310134678887652127899-85
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAP-------FIKVEVTKFT-EIGYVGRNVEQIIRDLVDVAINIVRES-RR 119 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VP-------F~~~daT~ft-E~gyvG~DVes~i~~l~~~a~~~~~~a-~~ 119 (437)
.|+|.+|+|+||||||-|+..||... +|| .+..|-+.+. -+.|-|+=-+. +..+++... +.. ..
T Consensus 198 ~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~I~~LDlg~L~AGakyRGeFEeR-Lk~il~ev~---~~~~~i 273 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEER-LKGVLNDLA---KQEGNV 273 (857)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHHHHHH-HHHHHHHHH---HCCCCE
T ss_conf 7899758789998899999999999983899978816902473388786147652117999-999999998---478986
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 6549888868887555531143211004668988986168
Q gi|254780829|r 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE 159 (437)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (437)
+.|++++-.. .+++.+ .+..+..+.+-..|..++
T Consensus 274 ILFIDEiHtl-----vGaG~~-~G~~DaaNlLKPaLaRGe 307 (857)
T PRK10865 274 ILFIDELHTM-----VGAGKA-DGAMDAGNMLKPALARGE 307 (857)
T ss_pred EEEECCHHHH-----CCCCCC-CCCCCHHHHHHHHHHCCC
T ss_conf 9997343543-----368877-775347888678873798
No 131
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.06 E-value=1.2e-05 Score=56.12 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 7688899999862030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
..+.|+=...-.|.|.+--+..+++++.|.+ |.--. .. -.+|.|+.||||||||.||-++|.+|
T Consensus 57 SgI~~~~~~~~Feny~~~~~~q~~al~~a~~--y~enf-~~------~~~gLlF~G~~GTGKThLA~aIan~L 120 (242)
T PRK07952 57 SGIRPLHQNCSFENYRVECEGQMNALSKARQ--YVEEF-DG------NIASFIFSGKPGTGKNHLAAAICNEL 120 (242)
T ss_pred CCCCHHHHCCEEECEECCCHHHHHHHHHHHH--HHHHH-CC------CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5998577288421201587778999999999--99865-43------88717997899997899999999999
No 132
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=0.00012 Score=49.46 Aligned_cols=71 Identities=20% Similarity=0.310 Sum_probs=42.3
Q ss_pred HHHHCEECHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCE
Q ss_conf 86203048689999-999999877886408644446656686-6996798886899999999970787---797143410
Q gi|254780829|r 15 ELDRYIIGQQDAKR-AVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLAGAP---FIKVEVTKF 89 (437)
Q Consensus 15 ~Ld~~VvGQ~~AKk-~lavav~nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l~VP---F~~~daT~f 89 (437)
-.|.||||-...-- +.|-+|- ..+... .-.+=| ..+.|++|.|||.|.+|++.++.-| .+++.+..|
T Consensus 109 tFd~FVvG~~N~lA~~aa~~va------~~~~~~--~g~~yNPLfIyG~~GlGKTHLL~AIgn~i~~~~~kV~Yvtae~F 180 (455)
T PRK12422 109 TFANFLVTPENDLPFRILQEFA------KVSEQG--KGFPFNPIYLFGPEGSGKTHLMQAAVSALRESGGKILYVSSELF 180 (455)
T ss_pred CCCCEEECCCCHHHHHHHHHHH------HCCCCC--CCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHH
T ss_conf 3558331586099999999998------375535--88767875887899997899999999985379986999749999
Q ss_pred EECC
Q ss_conf 1212
Q gi|254780829|r 90 TEIG 93 (437)
Q Consensus 90 tE~g 93 (437)
+.-+
T Consensus 181 ~~~~ 184 (455)
T PRK12422 181 TEHL 184 (455)
T ss_pred HHHH
T ss_conf 9999
No 133
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.04 E-value=0.00028 Score=47.18 Aligned_cols=98 Identities=22% Similarity=0.385 Sum_probs=53.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCC-------EEEEECCCEE-ECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970---787-------7971434101-212234310134678887652127899856
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAP-------FIKVEVTKFT-EIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VP-------F~~~daT~ft-E~gyvG~DVes~i~~l~~~a~~~~~~a~~~ 120 (437)
.|+|.+|+|.||||||-|+.-||... +|| ++..|...+. -+.|-|+ -|.-+..+++.... ....+
T Consensus 199 ~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~sLDl~~L~AGtkyRGe-FEeRlk~il~ei~~---~~~iI 274 (823)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIANRDVPDILEDKLVLTLDIGLLLAGTKYRGE-FEERIKKIMDEIKK---ANNII 274 (823)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEHHHHHHCCCCCHH-HHHHHHHHHHHHHH---CCCEE
T ss_conf 248850237999879999999999760889986875993688428877533422267-99999999999985---79869
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 549888868887555531143211004668988986168
Q gi|254780829|r 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE 159 (437)
Q Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (437)
.|++++-. +.+++.+ .+..+..+.+-..|-.++
T Consensus 275 LFIDEiHt-----lvGaG~~-~g~~DaaNlLKPaLarGe 307 (823)
T CHL00095 275 LVIDEIHT-----LIGAGAA-EGAIDAANILKPALARGK 307 (823)
T ss_pred EEECCHHH-----HCCCCCC-CCCHHHHHHHHHHHHCCC
T ss_conf 99735165-----3288976-664317887657864898
No 134
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.03 E-value=7.8e-06 Score=57.24 Aligned_cols=62 Identities=26% Similarity=0.465 Sum_probs=48.5
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970---787797143410121
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI 92 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~ 92 (437)
-+||+..|-+.+---+ +|... ...+||+.|.+||||+++||++-... +-||+.+||+.+.+.
T Consensus 7 ~liG~S~~m~~v~~~~----~~~A~--------~~~pVLI~GE~GtGK~~~Ar~IH~~S~r~~~pfi~v~C~~l~~~ 71 (325)
T PRK11608 7 NLLGEANSFLEVLEQV----SHLAP--------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (325)
T ss_pred CCEECCHHHHHHHHHH----HHHHC--------CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
T ss_conf 9858999999999999----99968--------89998988989837999999999658867999778877989977
No 135
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=98.02 E-value=1.5e-05 Score=55.48 Aligned_cols=79 Identities=29% Similarity=0.414 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC-CEEECCCCCCCHHH
Q ss_conf 68999999999987788640864444665668669967988868999999999707877971434-10121223431013
Q gi|254780829|r 23 QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVT-KFTEIGYVGRNVEQ 101 (437)
Q Consensus 23 Q~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT-~ftE~gyvG~DVes 101 (437)
-|+-+++.+-|.+ +++.+.. |=|.||+|||||-||.+||+.++=|-+.+.|- +|+-.=-||+--|-
T Consensus 4 t~~v~~v~~R~l~------yL~~G~P-------vHl~GPaG~GKT~LA~hvA~~r~RPV~l~~Gd~eL~~~DLvG~~~g~ 70 (265)
T TIGR02640 4 TDAVKRVTSRALR------YLKSGYP-------VHLRGPAGTGKTTLAMHVARKRDRPVVLINGDAELTTSDLVGSYAGY 70 (265)
T ss_pred CHHHHHHHHHHHH------HHCCCCC-------EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC
T ss_conf 7237999998766------3227886-------67447888556899999997368968998658232654423154675
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 4678887652127
Q gi|254780829|r 102 IIRDLVDVAINIV 114 (437)
Q Consensus 102 ~i~~l~~~a~~~~ 114 (437)
--.++.+.+..++
T Consensus 71 ~~~kv~DqfihnV 83 (265)
T TIGR02640 71 TRKKVVDQFIHNV 83 (265)
T ss_pred EEEEEEECCEEEE
T ss_conf 2222320121113
No 136
>KOG0989 consensus
Probab=98.02 E-value=1.2e-05 Score=55.95 Aligned_cols=58 Identities=29% Similarity=0.391 Sum_probs=44.7
Q ss_pred CHHHHHH--HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 8899999--862030486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r 8 SPREIVS--ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 8 tP~~i~~--~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
++-+-|+ .+|+. +||+..+.+|.-|+ .| + .-.|.|+.||||||||=-|++.|+.++-|
T Consensus 25 swteKYrPkt~de~-~gQe~vV~~L~~a~----~~-~---------~lp~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989 25 SWTEKYRPKTFDEL-AGQEHVVQVLKNAL----LR-R---------ILPHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred CHHHHHCCCCHHHH-CCHHHHHHHHHHHH----HH-C---------CCCEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 53787478737765-01599999999998----60-6---------88607866899986768999999985574
No 137
>PRK04132 replication factor C small subunit; Provisional
Probab=98.00 E-value=1.5e-05 Score=55.37 Aligned_cols=48 Identities=38% Similarity=0.655 Sum_probs=36.8
Q ss_pred HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 862030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 15 ~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
.||+ |||||+-.|.|- ||-... . +| +.|+-||||||||.=|.+||+.|
T Consensus 23 ~Ldd-IVgQehIVkRLK-----~YVk~~----s----mP-HLLFaGPPGvGKt~~al~lar~l 70 (863)
T PRK04132 23 RLDE-IVGQDHIVKRLK-----HYVKTG----S----MP-HLLFAGPPGVGKTTAALALAREL 70 (863)
T ss_pred CHHH-HCCHHHHHHHHH-----HHHCCC----C----CC-CEEECCCCCCCCHHHHHHHHHHH
T ss_conf 1655-227499999999-----886238----8----85-44304899877144788888876
No 138
>PRK00625 shikimate kinase; Provisional
Probab=98.00 E-value=6.2e-06 Score=57.85 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=30.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 866996798886899999999970787797143
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
-||.|+|++|||||-+.|.||+.++.||+-.|-
T Consensus 1 MnI~LIG~mGsGKStiGk~LA~~l~~~FvD~D~ 33 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 929998999998899999999993999577499
No 139
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=98.00 E-value=6.4e-06 Score=57.77 Aligned_cols=38 Identities=34% Similarity=0.589 Sum_probs=28.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCE
Q ss_conf 66866996798886899999999970---787797143410
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKF 89 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~f 89 (437)
...|++|.||||||||.||-+++..+ +-+...+.+++|
T Consensus 46 ~~~Nlll~G~~GtGKThLA~Ai~~~~~~~g~~v~f~~~~~L 86 (178)
T pfam01695 46 QAENLLLLGPPGVGKTHLACALGHQACRAGYSVLFTRTPDL 86 (178)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECHHH
T ss_conf 58768998999987899999999999986985999961679
No 140
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.99 E-value=1.3e-05 Score=55.87 Aligned_cols=34 Identities=41% Similarity=0.685 Sum_probs=31.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 6866996798886899999999970787797143
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
+.||.|+|+.|+|||-+.|.||+.|+.||+-.|.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCHH
T ss_conf 9618997179997768999999981998022469
No 141
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=97.98 E-value=1.3e-05 Score=55.76 Aligned_cols=62 Identities=26% Similarity=0.409 Sum_probs=46.5
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCEEEC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997---0787797143410121
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL---AGAPFIKVEVTKFTEI 92 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~---l~VPF~~~daT~ftE~ 92 (437)
-+|||..|-+.|---+ .++- ..+.+||+.|.|||||.++||+|=.. .+-||+.++|..+.|.
T Consensus 187 elIG~S~~m~~l~~~i----~~vA--------~sd~pVLI~GEtGTGKelvAr~IH~~S~R~~~Pfv~vNCaalpe~ 251 (510)
T PRK05022 187 EMIGQSPAMQQLKKEI----EVVA--------ASDLNVLITGETGVGKELVARAIHQASPRAVKPLVYLNCAALPES 251 (510)
T ss_pred CEEECCHHHHHHHHHH----HHHH--------CCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
T ss_conf 7520899999999999----9996--------899988988989813999999999668878998578889999856
No 142
>KOG0743 consensus
Probab=97.98 E-value=1.3e-05 Score=55.76 Aligned_cols=50 Identities=26% Similarity=0.457 Sum_probs=35.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHH
Q ss_conf 6686699679888689999999997078779714341012122343101346788876
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDV 109 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~ 109 (437)
=|.|.||.|||||||+=+.-|+|.+|+--..-.+- |++ +.|-+ +.+|+-.
T Consensus 234 wKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeL---t~v---~~n~d--Lr~LL~~ 283 (457)
T KOG0743 234 WKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLEL---TEV---KLDSD--LRHLLLA 283 (457)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHCCCCEEEEEE---CCC---CCCHH--HHHHHHH
T ss_conf 00041204799998889999997205873677440---023---68389--9999972
No 143
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.96 E-value=6.9e-06 Score=57.57 Aligned_cols=63 Identities=30% Similarity=0.412 Sum_probs=42.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6996798886899999999970787797143410121223431013467888765212789985654988886888755
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERI 134 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~ 134 (437)
|..-||||||||-+||.||+.|+.|++++ | -++.|.+.-+.++.+...-.-.-+++..++.+.
T Consensus 3 I~ISGpPGSGktTvA~~lA~~Lsl~~iSa--------G--------~iRelA~~~Gldl~E~~~aee~~eIDk~iD~~~ 65 (173)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA--------G--------DIRELAEKMGLDLAESKYAEENPEIDKKIDRRI 65 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEECC--------C--------HHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHH
T ss_conf 88735896864789999998639831202--------0--------078898642988777344305863116753788
No 144
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.96 E-value=6.8e-06 Score=57.62 Aligned_cols=40 Identities=43% Similarity=0.663 Sum_probs=34.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCCEEEC
Q ss_conf 6866996798886899999999970787---797143410121
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLAGAP---FIKVEVTKFTEI 92 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l~VP---F~~~daT~ftE~ 92 (437)
+.+++++||||||||.+++.+|..+.-+ ++.++++...+.
T Consensus 2 ~~~ill~G~~GsGKTtl~~~la~~~~~~~~~v~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHH
T ss_conf 9789999999702999999999872668996899875998988
No 145
>KOG0744 consensus
Probab=97.95 E-value=1.3e-05 Score=55.81 Aligned_cols=44 Identities=34% Similarity=0.484 Sum_probs=31.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHH
Q ss_conf 6996798886899999999970787797143410121223431013467888
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLV 107 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~ 107 (437)
|||-||||||||-|+|+||+.+.+-. .-..|.|.-+|---+.|.
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~--------~~~y~~~~liEinshsLF 223 (423)
T KOG0744 180 ILLHGPPGTGKTSLCKALAQKLSIRT--------NDRYYKGQLIEINSHSLF 223 (423)
T ss_pred EEEECCCCCCHHHHHHHHHHHHEEEE--------CCCCCCCEEEEEEHHHHH
T ss_conf 99857999882279999987514652--------376444069997046788
No 146
>PRK07261 topology modulation protein; Provisional
Probab=97.94 E-value=2.5e-05 Score=53.90 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=35.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHH
Q ss_conf 699679888689999999997078779714341012122343101
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVe 100 (437)
|+.+|+||+|||-|||.||..++.|++..|.= |=..|.+..+-+
T Consensus 3 I~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l-~w~p~w~~~~~~ 46 (171)
T PRK07261 3 IAIIGYSGSGKSTLARFLGQHYNCPVLHLDQL-HFSSNWQERDDD 46 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECCE-EECCCCEECCHH
T ss_conf 99988999868999999999879797970227-888999888899
No 147
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.93 E-value=2.2e-05 Score=54.27 Aligned_cols=41 Identities=34% Similarity=0.561 Sum_probs=35.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCEEEC
Q ss_conf 6686699679888689999999997---0787797143410121
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARL---AGAPFIKVEVTKFTEI 92 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~---l~VPF~~~daT~ftE~ 92 (437)
.+.+||+.|+|||||.++||++-.. .+-||+.++|+.+.+.
T Consensus 165 s~~~VLI~GEsGTGKe~~Ar~IH~~S~r~~~pFv~vnc~ai~~~ 208 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES 208 (457)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHH
T ss_conf 89958998899857899999999837988998387647879857
No 148
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.93 E-value=2.2e-05 Score=54.34 Aligned_cols=76 Identities=25% Similarity=0.325 Sum_probs=45.7
Q ss_pred CHHHHHH-HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEE
Q ss_conf 8899999-862030486899999999998778864086444466566866996798886899999999970---787797
Q gi|254780829|r 8 SPREIVS-ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIK 83 (437)
Q Consensus 8 tP~~i~~-~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~ 83 (437)
-|++|.+ -|+.+.+-......++.-|. .+-....+ ..-.+|+.|.||.|||||+||-++|.++ +.|.+.
T Consensus 118 mpk~i~~as~~d~~~~d~~R~~a~~~a~--~F~~~y~~-----~~~~kGlyl~G~~G~GKTyL~~aian~La~~g~~v~~ 190 (306)
T PRK08939 118 MPKDLLQATLADIDLDDLDRLDALMAAL--DFLEAYKP-----GEKVKGLYLYGDFGVGKTYLLAAIANELAKKGVSSTL 190 (306)
T ss_pred CCHHHHCCCHHHCCCCCHHHHHHHHHHH--HHHHHHCC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 7799980989864889778999999999--99997376-----9888778898999998999999999999986992999
Q ss_pred EECCCEE
Q ss_conf 1434101
Q gi|254780829|r 84 VEVTKFT 90 (437)
Q Consensus 84 ~daT~ft 90 (437)
+...+|.
T Consensus 191 v~~p~~~ 197 (306)
T PRK08939 191 VHFPEFI 197 (306)
T ss_pred EEHHHHH
T ss_conf 8759999
No 149
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.93 E-value=8e-06 Score=57.15 Aligned_cols=38 Identities=32% Similarity=0.452 Sum_probs=29.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEE
Q ss_conf 6866996798886899999999970---7877971434101
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFT 90 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ft 90 (437)
..|+||.||||+|||.||-++|+++ +.+-+...++.|.
T Consensus 183 ~~nLlf~G~~G~GKTfLa~~IA~ell~~g~sViy~ta~~L~ 223 (330)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKTVIYRTSDELI 223 (330)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHH
T ss_conf 88669889999988999999999999879949996299999
No 150
>pfam01434 Peptidase_M41 Peptidase family M41.
Probab=97.91 E-value=2.1e-05 Score=54.41 Aligned_cols=101 Identities=10% Similarity=0.029 Sum_probs=73.3
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 204665221124666420246640167542211212554334512688615542467888764346889999999987--
Q gi|254780829|r 277 PLVEGSSVSTKYGSINTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMK-- 354 (437)
Q Consensus 277 ~~~e~~~v~~~~~~~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~-- 354 (437)
.+.+.++..++||+++|+.+.|++.+.++..|.+++|+...+++....|-+......-..++.+..-+|.++..+.+-
T Consensus 2 ~ls~~ek~~vA~HEaGHAlva~~l~~~~~v~kvtI~prg~alG~t~~~p~ed~~~~tk~~l~~~I~v~LgGraAEei~fG 81 (192)
T pfam01434 2 VISEEEKRLVAYHEAGHALVGLLLPGADPVHKVTIIPRGQALGYTQFLPEEDKLLYTKSQLLARIDVALGGRAAEELIFG 81 (192)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99989999999999999999998469998217998627887635786573011215899999999998638999999818
Q ss_pred HCCCEEEECHHHHHHHHHHHHHHH
Q ss_conf 519689984249999999999840
Q gi|254780829|r 355 TEGIILDFTEDSIDALADVAVNLN 378 (437)
Q Consensus 355 ~~~v~L~ft~~Al~~IA~~A~~~~ 378 (437)
.++|.-.-++| +....+.|.+|-
T Consensus 82 ~~~vttGa~~D-L~~At~lA~~mV 104 (192)
T pfam01434 82 DDEVTTGASND-LEQATKIARQMV 104 (192)
T ss_pred CCCCCCCCHHH-HHHHHHHHHHHH
T ss_conf 99877671522-999999999999
No 151
>PRK08118 topology modulation protein; Reviewed
Probab=97.91 E-value=3.1e-05 Score=53.34 Aligned_cols=40 Identities=28% Similarity=0.572 Sum_probs=34.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCC
Q ss_conf 69967988868999999999707877971434101212234
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG 96 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG 96 (437)
|+.+|+||+|||-||+.||..+|.|.+..|. =|=+.|.+.
T Consensus 4 I~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~-l~w~~~w~~ 43 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPVHHLDA-LFWKPNWEG 43 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEECCC-EEECCCCCC
T ss_conf 9998899987999999999988969796443-476689946
No 152
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.91 E-value=2.1e-05 Score=54.48 Aligned_cols=41 Identities=20% Similarity=0.456 Sum_probs=35.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH---HHCCCEEEEECCCEEEC
Q ss_conf 668669967988868999999999---70787797143410121
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLAR---LAGAPFIKVEVTKFTEI 92 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~---~l~VPF~~~daT~ftE~ 92 (437)
..++||+.|+|||||.++||++-. -.+-||+.++|+.+.+.
T Consensus 161 s~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfv~vnC~~l~~~ 204 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES 204 (441)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
T ss_conf 89948998999810999999999657877898079878989845
No 153
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.89 E-value=1.4e-05 Score=55.53 Aligned_cols=66 Identities=26% Similarity=0.384 Sum_probs=55.0
Q ss_pred HHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCE
Q ss_conf 9999862030486899999999998778864086444466566866996798886899999999970-787797143410
Q gi|254780829|r 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA-GAPFIKVEVTKF 89 (437)
Q Consensus 11 ~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l-~VPF~~~daT~f 89 (437)
.+-.+|++.++.-+++.+.+-.|+- .-.+++|+|||||+|.+|||+++... +..||--=.|.|
T Consensus 13 ~l~~~L~~gl~ERe~~i~l~lLaal----------------agehvlllGPPGtAKS~larrl~~~~~~a~~FeyLltRF 76 (498)
T PRK13531 13 RLSSALEKGLYERSHAIRLCLLAAL----------------SGESVFLLGPPGIAKSLIARRLKFAFQHARAFEYLMTRF 76 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------CCCCEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9999997011446999999999997----------------289469888995138899999999855740899998746
Q ss_pred EEC
Q ss_conf 121
Q gi|254780829|r 90 TEI 92 (437)
Q Consensus 90 tE~ 92 (437)
|+-
T Consensus 77 stP 79 (498)
T PRK13531 77 STP 79 (498)
T ss_pred CCH
T ss_conf 988
No 154
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.89 E-value=0.00067 Score=44.69 Aligned_cols=67 Identities=22% Similarity=0.387 Sum_probs=41.4
Q ss_pred HHHHCEECHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHH--CC---CEEEEECC
Q ss_conf 8620304868999-9999999877886408644446656686-6996798886899999999970--78---77971434
Q gi|254780829|r 15 ELDRYIIGQQDAK-RAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLA--GA---PFIKVEVT 87 (437)
Q Consensus 15 ~Ld~~VvGQ~~AK-k~lavav~nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l--~V---PF~~~daT 87 (437)
..|.||+|-.... .+++.++- ..++. +.| +++.||+|+|||.|++++...+ .- -++.+++.
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va------~~~g~------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVA------ENPGG------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CHHHEEECCCHHHHHHHHHHHH------HCCCC------CCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHH
T ss_conf 5542204774499999999987------56688------68957998799997899999999999862998648850489
Q ss_pred CEEECC
Q ss_conf 101212
Q gi|254780829|r 88 KFTEIG 93 (437)
Q Consensus 88 ~ftE~g 93 (437)
.|+..+
T Consensus 153 ~f~~~~ 158 (408)
T COG0593 153 DFTNDF 158 (408)
T ss_pred HHHHHH
T ss_conf 989999
No 155
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=3e-05 Score=53.41 Aligned_cols=47 Identities=26% Similarity=0.388 Sum_probs=40.4
Q ss_pred HCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 18 RYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 18 ~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
+-||||+.+++.|.-++. ....|...|+.||.|+||+.+|+..|+.+
T Consensus 4 ~~iiGq~~~~~~L~~ai~-------------~~rl~hAyLF~Gp~G~GK~~~A~~fa~~L 50 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIE-------------QNRIAPAYLFAGPEGVGRKLAALRFIEGL 50 (314)
T ss_pred CCCCCCHHHHHHHHHHHH-------------CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 312594999999999998-------------59967448778999832999999999998
No 156
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=2.6e-05 Score=53.83 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=38.3
Q ss_pred EEC-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 048-689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 20 IIG-QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 20 VvG-Q~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
++| |+.+++.|.-++. + .-.|--.|+.||.|+||+.+|+++|+.+.-
T Consensus 7 ~~~~Q~~i~~~L~~~i~----~---------~rl~HA~Lf~Gp~G~GK~~~A~~~A~~LlC 54 (329)
T PRK08058 7 LTALQPIVVKMLQNSIA----K---------NRLAHAYLFEGAKGTGKKATALWLAKSLFC 54 (329)
T ss_pred HHHHHHHHHHHHHHHHH----C---------CCCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 88318999999999998----5---------996615655789998899999999999739
No 157
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=3e-05 Score=53.48 Aligned_cols=48 Identities=29% Similarity=0.441 Sum_probs=40.3
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997078
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-||||+...++|+-|+-+ . .+..-.||.||-|||||-+||-+|+.||-
T Consensus 17 ~~vgq~~v~~~l~~a~~~----------~---r~~haylf~g~rg~gktt~ari~ak~lnc 64 (696)
T PRK06872 17 EVVGQEHILTALSNGLKE----------N---RLHHAYLFSGTRGVGKTSIARLFAKGLNC 64 (696)
T ss_pred HHCCCHHHHHHHHHHHHC----------C---CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 523859999999999971----------9---86304751178988888999999998678
No 158
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.84 E-value=3e-05 Score=53.40 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=35.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCEEEC
Q ss_conf 6686699679888689999999997---0787797143410121
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARL---AGAPFIKVEVTKFTEI 92 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~---l~VPF~~~daT~ftE~ 92 (437)
.+.+||+.|++||||+++||+|=.. .+-||+.++|+.+.+-
T Consensus 160 ~~~pVLI~GE~GTGK~~~Ar~IH~~S~r~~~pfi~vnC~~~~~~ 203 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD 203 (469)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
T ss_conf 89978998989826999999999748877999578767889977
No 159
>PRK12377 putative replication protein; Provisional
Probab=97.83 E-value=1.5e-05 Score=55.35 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
...|++|+||||||||.||-+|+.++
T Consensus 100 ~~~NlIf~G~pGtGKTHLA~AIg~~a 125 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88608998999987889999999999
No 160
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.81 E-value=2.2e-05 Score=54.35 Aligned_cols=31 Identities=39% Similarity=0.716 Sum_probs=28.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 6996798886899999999970787797143
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
|++.|++|||||-+|++||+.++.||+-.|-
T Consensus 2 iiv~GvsGsGKSTia~~La~~lg~~~i~~D~ 32 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDD 32 (150)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECCCC
T ss_conf 8999189999999999999971995641543
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.80 E-value=5.3e-05 Score=51.85 Aligned_cols=97 Identities=22% Similarity=0.348 Sum_probs=52.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCC-------EEEEECCCEE-ECCCCCCCHHHHHHHHHHHHHHHHHHH--H
Q ss_conf 66866996798886899999999970---787-------7971434101-212234310134678887652127899--8
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAP-------FIKVEVTKFT-EIGYVGRNVEQIIRDLVDVAINIVRES--R 118 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VP-------F~~~daT~ft-E~gyvG~DVes~i~~l~~~a~~~~~~a--~ 118 (437)
.|+|.+|+|.||||||-|+.-||... +|| .+..|.+.+. -+.|-|+ -|.=+..+.+.. +++ .
T Consensus 193 ~KNNpiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~LDlg~LvAGtkyRGe-FEeRlk~ii~ev----~~~~~~ 267 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGE-FEERLKAVLNEV----TKSEGQ 267 (852)
T ss_pred CCCCCCEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCCEEEEHHHHHCCCCCCHH-HHHHHHHHHHHH----HHCCCC
T ss_conf 248972127999879999999999986699997885185127528877521530078-999999999999----858998
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 56549888868887555531143211004668988986168
Q gi|254780829|r 119 RDEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE 159 (437)
Q Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (437)
.+.|++++-.. .+++.+ .+..+..+.+-..|-.++
T Consensus 268 iILFIDEiHtl-----iGaG~~-~G~~DAaNlLKPaLarGe 302 (852)
T TIGR03346 268 IILFIDELHTL-----VGAGKA-EGAMDAGNMLKPALARGE 302 (852)
T ss_pred EEEEEHHHHHH-----CCCCCC-CCCCCHHHHHHHHHHCCC
T ss_conf 79996125553-----268876-664106777437874798
No 162
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.78 E-value=2.8e-05 Score=53.58 Aligned_cols=37 Identities=27% Similarity=0.522 Sum_probs=28.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCC
Q ss_conf 66866996798886899999999970---78779714341
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTK 88 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ 88 (437)
.+.|++|+||||||||.||-++|..+ +++...+..++
T Consensus 104 ~~~nl~l~G~~G~GKthLa~Ai~~~l~~~g~sv~f~~~~e 143 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPD 143 (254)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHH
T ss_conf 5882899899998799999999999998398499988599
No 163
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.77 E-value=2.8e-05 Score=53.67 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=29.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 686699679888689999999997078779714
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~d 85 (437)
++-|++.|++|||||-++++||+.++.||+-.|
T Consensus 3 ~~a~VVmGVsGsGKSTvg~~LA~~L~~~fiegD 35 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGD 35 (176)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf 857999828989989999999999598776234
No 164
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.74 E-value=6.6e-05 Score=51.22 Aligned_cols=118 Identities=20% Similarity=0.189 Sum_probs=69.1
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC------------EEEE-E
Q ss_conf 30486899999999998778864086444466566866996798886899999999970787------------7971-4
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP------------FIKV-E 85 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP------------F~~~-d 85 (437)
-||||+.-.++|.-|+- .- -++.-.||.||-|||||-+||-||+.+|-- --.| .
T Consensus 24 ~~~gq~~~~~~l~~~~~----~~---------~~~~a~l~~g~rg~gktt~ari~a~~lnc~~~~~~~~~~~~~c~~c~~ 90 (600)
T PRK09111 24 DLIGQEAMVRTLRNAFE----TG---------RIAQAFMLTGVRGVGKTTTARILARALNYKGPDGVGGPTIDPCGVGEH 90 (600)
T ss_pred HHCCCHHHHHHHHHHHH----CC---------CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHH
T ss_conf 63385999999999997----29---------842047645789878999999999996698876668998898998865
Q ss_pred CCC--------EEE---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 341--------012---122343101346788876521278998565498888688875555311432110046689889
Q gi|254780829|r 86 VTK--------FTE---IGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKTATSNTREVFRKK 154 (437)
Q Consensus 86 aT~--------ftE---~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (437)
|.+ ..| +-.- .|+.+. .|++...|..-.+...+++++ . -|.-.....+.++..
T Consensus 91 c~~i~~~~~~d~~e~daas~~--~v~~~r-~~~~~~~~~p~~~~~kv~iid---e----------vhmls~~afnallkt 154 (600)
T PRK09111 91 CQAIMEGRHVDVIEMDAASHT--GVDDIR-EIIESVRYRPVSARYKVYIID---E----------VHMLSTAAFNALLKT 154 (600)
T ss_pred HHHHHCCCCCCEEEEECCCCC--CHHHHH-HHHHHHCCCCCCCCEEEEEEE---C----------CCCCCHHHHHHHHHH
T ss_conf 898866899875885155457--888999-999860538877754699960---0----------110579999999987
Q ss_pred HHHCCCCCCEE
Q ss_conf 86168888549
Q gi|254780829|r 155 LRDGEISDKEI 165 (437)
Q Consensus 155 l~~~~~~~~~i 165 (437)
|..+......|
T Consensus 155 leepp~~~~fi 165 (600)
T PRK09111 155 LEEPPPHVKFI 165 (600)
T ss_pred HHCCCCCEEEE
T ss_conf 62598654999
No 165
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.73 E-value=3.5e-05 Score=53.03 Aligned_cols=40 Identities=35% Similarity=0.585 Sum_probs=35.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH----HCCCEEEEECCCEEECC
Q ss_conf 86699679888689999999997----07877971434101212
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARL----AGAPFIKVEVTKFTEIG 93 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~----l~VPF~~~daT~ftE~g 93 (437)
.+||++|+|||||+++|+.+... .+.||+++.|..|+|-.
T Consensus 102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL 145 (403)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEEEHHHHCCCH
T ss_conf 84798668875388999999986121358987997777737677
No 166
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.73 E-value=3.7e-05 Score=52.86 Aligned_cols=46 Identities=39% Similarity=0.620 Sum_probs=37.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHH
Q ss_conf 68669967988868999999999707877971434101212234310134
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~ 102 (437)
|+=|+++||||||||-||=.||+.++...+.+|.-.+ |-|-|+++.
T Consensus 4 ~~ii~i~GpTasGKs~la~~la~~~~~eIIsaDS~Qv----Yk~l~IgTa 49 (304)
T PRK00091 4 PKLIVLVGPTASGKTALAIELAKRLNGEIISVDSMQV----YRGMDIGTA 49 (304)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHH----HCCCCEEEC
T ss_conf 9779998988658999999999987998994126887----499986889
No 167
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.71 E-value=3.7e-05 Score=52.81 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=28.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 686699679888689999999997078779714
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVE 85 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~d 85 (437)
+.=|++.|++|||||.+++.||+.++.||+-.|
T Consensus 8 ~~iiVVMGVsGsGKSTig~~LA~~l~~~fiegD 40 (177)
T PRK11545 8 HHIYVLMGVSGSGKSAVASAVAHQLHAAFLDGD 40 (177)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCCEECCC
T ss_conf 759999847989999999999998199855365
No 168
>KOG0736 consensus
Probab=97.71 E-value=2.9e-05 Score=53.54 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=35.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf 6699679888689999999997078779714341012
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE 91 (437)
-+||-||||||||.+.++.|++++.+|+.+||.+|+-
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~ 469 (953)
T KOG0736 433 SVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVA 469 (953)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHHHHH
T ss_conf 7998679998757999999998387257013898864
No 169
>TIGR01187 potA polyamine ABC transporter, ATP-binding protein; InterPro: IPR005893 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family comprises the spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belongs to the larger ATP-Binding Cassette (ABC) transporter superfamily. Polyamines like spermidine and putrescine play a vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).; GO: 0015417 polyamine-transporting ATPase activity, 0015846 polyamine transport, 0016020 membrane.
Probab=97.70 E-value=1.9e-05 Score=54.68 Aligned_cols=45 Identities=31% Similarity=0.457 Sum_probs=35.2
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCE--EEEECCCEEECCCCCCCHHHH
Q ss_conf 967988868999999999707877--971434101212234310134
Q gi|254780829|r 58 LVGPTGVGKTAISRRLARLAGAPF--IKVEVTKFTEIGYVGRNVEQI 102 (437)
Q Consensus 58 LiGPtGtGKTlLAktLA~~l~VPF--~~~daT~ftE~gyvG~DVes~ 102 (437)
|+||||||||-|-+.|||+-..-+ +..|+++.|++--.-+.|+.+
T Consensus 1 LLGpSGcGKTTlLrlLAGf~~pd~G~i~ldg~d~~~vPp~~R~in~v 47 (331)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTEVPPHLRSINMV 47 (331)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCE
T ss_conf 97888874799999983458777550775671012157220614605
No 170
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=5.4e-05 Score=51.79 Aligned_cols=77 Identities=29% Similarity=0.390 Sum_probs=51.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56686699679888689999999997078779714341012122343101346788876521278998565498888688
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~ 130 (437)
..|+++++.||+|||||++++.+|.+ +.+|...++.... ..|+|... .+++..+......++..++.++++...
T Consensus 16 ~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~a~~~~~~ii~~d~~~~~~ 89 (494)
T COG0464 16 EPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEIL-SKYVGESE----LRLRELFEEAEKLAPSIIFIDEIDALA 89 (494)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHC-CCCCCCCCCCHHH-HHHCCHHH----HHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 76421000368876503665676512-5410135652243-22205108----999999899986397636404433212
Q ss_pred HHH
Q ss_conf 875
Q gi|254780829|r 131 EER 133 (437)
Q Consensus 131 ~~~ 133 (437)
.++
T Consensus 90 ~~~ 92 (494)
T COG0464 90 PKR 92 (494)
T ss_pred CCC
T ss_conf 344
No 171
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.67 E-value=6.9e-05 Score=51.11 Aligned_cols=99 Identities=23% Similarity=0.354 Sum_probs=54.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEE-------EEECCCEE-ECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970---78779-------71434101-212234310134678887652127899856
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFI-------KVEVTKFT-EIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~-------~~daT~ft-E~gyvG~DVes~i~~l~~~a~~~~~~a~~~ 120 (437)
.|+|.+|+|.||||||-|+.-||... +||-. ..|.+.+. -+.|-| +-|.-+..+++.... ....+
T Consensus 206 ~KNNpiLvGepGVGKTAIvEGLA~rI~~g~VP~~L~~~~i~~Ldl~~LiAGtkyRG-efEeRlk~vi~e~~~---~~~~I 281 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG-DFEKRFKALLKQLEQ---DTNSI 281 (758)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCH-HHHHHHHHHHHHHHH---CCCEE
T ss_conf 25896021699986999999999999738997655898899845877861686415-499999999999985---79859
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 549888868887555531143211004668988986168
Q gi|254780829|r 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGE 159 (437)
Q Consensus 121 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (437)
.|++++- .+.+++.+..+..+..+.+-..|..++
T Consensus 282 LFIDEiH-----~ivGaG~~~gg~~DaaNlLKP~LarG~ 315 (758)
T PRK11034 282 LFIDEIH-----TIIGAGAASGGQVDAANLIKPLLSSGK 315 (758)
T ss_pred EEEECHH-----HHCCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 9980434-----422688767776467887457874697
No 172
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=97.66 E-value=0.00013 Score=49.22 Aligned_cols=62 Identities=19% Similarity=0.330 Sum_probs=44.9
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCEEEC
Q ss_conf 3048689999999999877886408644446656686699679888689999999997---0787797143410121
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARL---AGAPFIKVEVTKFTEI 92 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~---l~VPF~~~daT~ftE~ 92 (437)
.+||+..+-+.+---+ +|... ..+.||+.|.|||||.++||++=.. .+-||+.++|..+.+.
T Consensus 205 ~iig~S~~m~~v~~~a----~r~A~--------~d~pVLI~GEsGTGKellAraIH~~S~R~~~pFv~vnC~alp~~ 269 (513)
T PRK10820 205 QIVAVSPKMKHVVEQA----RKLAM--------LSAPLLITGDTGTGKDLFAYACHLASPRAKKPYLALNCASIPED 269 (513)
T ss_pred HHEECCHHHHHHHHHH----HHHHC--------CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCHH
T ss_conf 7510899999999999----99859--------89988998989824999999999668878998268889989967
No 173
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.66 E-value=0.0001 Score=49.99 Aligned_cols=84 Identities=14% Similarity=0.231 Sum_probs=54.5
Q ss_pred CCCCCCCCC--EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 255433451--268861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r 312 LLPEIQGRF--PVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 (437)
Q Consensus 312 lipE~~GR~--p~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L 389 (437)
..|.+.-|+ -..+.+++++.+.+..||.. .++..++ .++++.++.|++.-- + -.|.|
T Consensus 140 ~l~dL~SRl~~~~~~~I~~pdd~~~~~iL~k-----------~~~~r~i--~i~~~vi~yl~~r~~-R-------~~~~l 198 (226)
T TIGR03420 140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQS-----------RAARRGL--QLPDEVADYLLRHGS-R-------DMGSL 198 (226)
T ss_pred CHHHHHHHHHCCCEEECCCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCC-C-------CHHHH
T ss_conf 0177999996885685279999999999999-----------9998599--889999999998637-9-------89999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHH
Q ss_conf 9999998677621275687768998599999899
Q gi|254780829|r 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 (437)
Q Consensus 390 rtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l 423 (437)
..+++++-...+- ..+ .||-..|++-|
T Consensus 199 ~~~l~~Ld~~sl~-----~kr--~ITi~l~kevL 225 (226)
T TIGR03420 199 MALLDALDRASLA-----AKR--KITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHHH-----HCC--CCCHHHHHHHH
T ss_conf 9999999999998-----089--99999999984
No 174
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.64 E-value=5.5e-05 Score=51.71 Aligned_cols=32 Identities=34% Similarity=0.668 Sum_probs=30.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 66996798886899999999970787797143
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
||.|+||+|||||-+.|.||+.++.||+-.|.
T Consensus 2 ~I~LiG~mGaGKTtvGr~LA~~L~~~FvD~D~ 33 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRISEVLDLQFIDMDE 33 (488)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 49998999998779999999983979564779
No 175
>CHL00026 ycf2 Ycf2
Probab=97.63 E-value=7.6e-05 Score=50.83 Aligned_cols=40 Identities=33% Similarity=0.590 Sum_probs=36.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf 6686699679888689999999997078779714341012
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE 91 (437)
.++|||+|||.|||.-+|+|.||.-.=|||+.+.-.+|-.
T Consensus 1629 pSkGILlIGsieTGRSYLVK~LAanSYvPlI~I~lnklL~ 1668 (2286)
T CHL00026 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECHHHHHC
T ss_conf 7675279788766668999987742637408963899841
No 176
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=97.63 E-value=0.00011 Score=49.87 Aligned_cols=40 Identities=30% Similarity=0.515 Sum_probs=34.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH---HCCCEEEEECCCEEEC
Q ss_conf 686699679888689999999997---0787797143410121
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARL---AGAPFIKVEVTKFTEI 92 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~---l~VPF~~~daT~ftE~ 92 (437)
..+||+.|.|||||+++|+++-.. .+-||+.++|..+.+.
T Consensus 348 ~~pVLI~GE~GtGKe~lAraIH~~S~r~~~pfv~vnC~ai~~~ 390 (639)
T PRK11388 348 SFPILLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLLPDE 390 (639)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHH
T ss_conf 9968988989810999999999557778998189878989846
No 177
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.63 E-value=0.001 Score=43.57 Aligned_cols=66 Identities=24% Similarity=0.410 Sum_probs=43.2
Q ss_pred HHHCEECHHHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHH-----CCCEEEEECCC
Q ss_conf 620304868999-9999999877886408644446656686-6996798886899999999970-----78779714341
Q gi|254780829|r 16 LDRYIIGQQDAK-RAVAIALRNRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLA-----GAPFIKVEVTK 88 (437)
Q Consensus 16 Ld~~VvGQ~~AK-k~lavav~nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l-----~VPF~~~daT~ 88 (437)
.|.||||....- -+.|.+| .-..+ .+-| +.+.||+|.|||.|.+|+|.++ +.-.+++.+-.
T Consensus 118 FdnFVvG~sN~lA~aAA~~V-------a~~pg-----~~yNPLfIyG~~GlGKTHLl~AIgn~~~~~~p~~~v~Y~tae~ 185 (447)
T PRK00149 118 FDNFVVGKSNRLAHAAALAV-------AENPG-----KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVSSEK 185 (447)
T ss_pred CCCCEECCCCHHHHHHHHHH-------HHCCC-----CCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHH
T ss_conf 32622269859999999999-------83767-----6778558977998878899999999999858997289954999
Q ss_pred EEECC
Q ss_conf 01212
Q gi|254780829|r 89 FTEIG 93 (437)
Q Consensus 89 ftE~g 93 (437)
|+.-+
T Consensus 186 F~~~~ 190 (447)
T PRK00149 186 FTNDF 190 (447)
T ss_pred HHHHH
T ss_conf 99999
No 178
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.62 E-value=0.00037 Score=46.36 Aligned_cols=12 Identities=92% Similarity=1.365 Sum_probs=5.6
Q ss_pred EEEECCCCCCHH
Q ss_conf 699679888689
Q gi|254780829|r 56 ILLVGPTGVGKT 67 (437)
Q Consensus 56 iLLiGPtGtGKT 67 (437)
+.|+||||+|||
T Consensus 197 i~lvGPTGVGKT 208 (282)
T TIGR03499 197 IALVGPTGVGKT 208 (282)
T ss_pred EEEECCCCCCHH
T ss_conf 999778887578
No 179
>PRK08903 hypothetical protein; Validated
Probab=97.62 E-value=0.00015 Score=48.88 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=53.6
Q ss_pred CCCCCCCCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 2554334512--68861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r 312 LLPEIQGRFP--VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 (437)
Q Consensus 312 lipE~~GR~p--~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L 389 (437)
+.|.+.-|+- ..+.+++++.+.+..||. ..+...|+ ..+++.++.|++.--. -.|.|
T Consensus 138 ~~~DL~SRl~~gl~~~i~~pdde~~~~iL~-----------~~a~~rgl--~l~~~v~~yl~~r~~R--------~~~~L 196 (227)
T PRK08903 138 VREDLRTRLGWGLVYEVKPLSDEDKIAALK-----------AAAAERGL--QLADEVPDYLLTHFRR--------DMPSL 196 (227)
T ss_pred CCHHHHHHHHCCCEEEEECCCHHHHHHHHH-----------HHHHHCCC--CCCHHHHHHHHHHHCC--------CHHHH
T ss_conf 008999999389738997979999999999-----------99996299--9988999999998347--------89999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHH
Q ss_conf 99999986776212756877689985999998999
Q gi|254780829|r 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 (437)
Q Consensus 390 rtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~ 424 (437)
..+++++-..... .. -.||-..|++.|+
T Consensus 197 ~~~l~~Ld~~sl~-----~k--r~iTi~lvkevLa 224 (227)
T PRK08903 197 MALLDALDRYSLE-----QK--RAVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHHH-----CC--CCCCHHHHHHHHC
T ss_conf 9999999999998-----29--9999999999855
No 180
>PRK09087 hypothetical protein; Validated
Probab=97.60 E-value=0.00013 Score=49.25 Aligned_cols=55 Identities=29% Similarity=0.582 Sum_probs=39.2
Q ss_pred HHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 98620304868999999999987788640864444665668-6699679888689999999997078779
Q gi|254780829|r 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK-NILLVGPTGVGKTAISRRLARLAGAPFI 82 (437)
Q Consensus 14 ~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~ 82 (437)
.-+|.|+||.... .|+++-..| +. -|+ .+.|.||+|||||.|++..++..+..++
T Consensus 18 ~~~dnF~vs~~N~---~a~~~l~~~-----~~------w~~~~~~L~Gp~gsGKTHL~~~~~~~~~a~~~ 73 (226)
T PRK09087 18 YGRDDLVVTESNR---AAVSLVDRW-----PN------WPSPVVVLAGPVGSGKTHLASIWREKADALLV 73 (226)
T ss_pred CCCCCEEECCCHH---HHHHHHHHC-----CC------CCCCEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 8733647757699---999999847-----26------77775899899999886999999998099683
No 181
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=7.9e-05 Score=50.71 Aligned_cols=46 Identities=35% Similarity=0.633 Sum_probs=38.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHH
Q ss_conf 68669967988868999999999707877971434101212234310134
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~ 102 (437)
|+=++++|||+||||-||=.||+.+|.+.+++|.- |+ |-|=|+++.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm---Qv-Yr~mdIGTA 48 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM---QV-YRGLDIGTA 48 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHH---HH-CCCCCCCCC
T ss_conf 63799989887577899999999829928930235---53-188863079
No 182
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.58 E-value=6.7e-05 Score=51.18 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=27.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 669967988868999999999707877971
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
||+|+||||+||+-.|+.||+..++|.++.
T Consensus 2 ~iillGpPGsGKgT~a~~l~~~~~~~hiSt 31 (225)
T PTZ00088 2 KIVLFGAPGVGKGTFAEILSKKEKLKHINM 31 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEECH
T ss_conf 799989999987999999999879906878
No 183
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.57 E-value=7e-05 Score=51.05 Aligned_cols=29 Identities=34% Similarity=0.683 Sum_probs=26.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 66996798886899999999970787797
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPFIK 83 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~ 83 (437)
+|+|+||||+||+..|+.||+..+.+.++
T Consensus 2 ~iillG~PGsGKgTqa~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 79998999998799999999986991786
No 184
>KOG2680 consensus
Probab=97.54 E-value=7e-05 Score=51.06 Aligned_cols=67 Identities=24% Similarity=0.432 Sum_probs=53.1
Q ss_pred HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCCEEEEECCCEE
Q ss_conf 862030486899999999998778864086444466566866996798886899999999970--7877971434101
Q gi|254780829|r 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA--GAPFIKVEVTKFT 90 (437)
Q Consensus 15 ~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l--~VPF~~~daT~ft 90 (437)
|-.+-.|||-.|.|+..|-+ +=++-.. |--.-+|+-||||+|||-||=.+|+.+ ++||..+.||+.-
T Consensus 37 ~~s~GmVGQ~~AR~Aagvi~----kmi~egk-----iaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~ 105 (454)
T KOG2680 37 YVSEGMVGQVKARKAAGVIL----KMIREGK-----IAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIY 105 (454)
T ss_pred CCCCCCHHHHHHHHHHHHHH----HHHHCCC-----CCCEEEEEECCCCCCCEEEEEEHHHHHCCCCCEEEEECCEEE
T ss_conf 32666311588888767999----9987286-----321389972489888441000024540788750365022222
No 185
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.52 E-value=0.00017 Score=48.48 Aligned_cols=62 Identities=27% Similarity=0.471 Sum_probs=48.3
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf 30486899999999998778864086444466566866996798886899999999970---787797143410121
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI 92 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~ 92 (437)
-+|||..|-+.+--.|- .+. --.++||+.|-|||||-+.||++-+.. +-||+++.|..+-|.
T Consensus 224 ~iIG~S~am~~ll~~i~----~VA--------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 224 GIIGRSPAMRQLLKEIE----VVA--------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred CCCCCCHHHHHHHHHHH----HHH--------CCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHH
T ss_conf 62306999999999999----872--------689807984588853899999998737555798666312225378
No 186
>PRK05642 DNA replication initiation factor; Validated
Probab=97.52 E-value=0.00018 Score=48.37 Aligned_cols=85 Identities=15% Similarity=0.282 Sum_probs=50.8
Q ss_pred CCCCCCCCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 2554334512--68861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r 312 LLPEIQGRFP--VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 (437)
Q Consensus 312 lipE~~GR~p--~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L 389 (437)
..|.+.-|+- ..+.+++++.+++.++|.. .....|+ ..+++.++.|++.--. --|.|
T Consensus 147 ~l~DL~SRl~~~~~~~i~~l~d~~~~~iL~~-----------~a~~rgi--~l~~~v~~yl~~r~~R--------~~~~L 205 (234)
T PRK05642 147 KLPDLKSRLTLALVFQMRGLSDEDKLRALQL-----------RASRRGL--HLTDEVGHFILTRGTR--------SMSAL 205 (234)
T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCCC--------CHHHH
T ss_conf 0167999995781275148998999999999-----------9775468--9998999999997358--------89999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHH
Q ss_conf 99999986776212756877689985999998999
Q gi|254780829|r 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 (437)
Q Consensus 390 rtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~ 424 (437)
..+++++- ..+.. .+-.||-..|++.++
T Consensus 206 ~~~l~~Ld-~~sl~------~kr~iTiplvk~vLg 233 (234)
T PRK05642 206 FDLLERLD-QASLQ------AQRKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHH-HHHHH------HCCCCCHHHHHHHHC
T ss_conf 99999999-99998------389999999999838
No 187
>KOG0741 consensus
Probab=97.52 E-value=0.00037 Score=46.35 Aligned_cols=31 Identities=42% Similarity=0.783 Sum_probs=29.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 8669967988868999999999707877971
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
..+||-||||+|||-||-++|...+-||+++
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKi 569 (744)
T KOG0741 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKI 569 (744)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 5899866998876889999975279984797
No 188
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.51 E-value=9.5e-05 Score=50.19 Aligned_cols=28 Identities=50% Similarity=0.822 Sum_probs=24.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 6996798886899999999970787797
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIK 83 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~ 83 (437)
|+|+||||||||..|+.||+..+++.++
T Consensus 2 i~l~G~PGsGKgTqa~~La~~~~~~~is 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 8998999998799999999997984676
No 189
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.51 E-value=0.00012 Score=49.61 Aligned_cols=30 Identities=37% Similarity=0.841 Sum_probs=25.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 866996798886899999999970787797
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPFIK 83 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~ 83 (437)
.+|+++||||+|||-+|+.||+.++.|=+.
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hls 30 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLD 30 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEC
T ss_conf 979998999998899999999976997855
No 190
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.49 E-value=9.8e-05 Score=50.09 Aligned_cols=33 Identities=36% Similarity=0.406 Sum_probs=27.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEE
Q ss_conf 66866996798886899999999970---7877971
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKV 84 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~ 84 (437)
.|+|.+|+|.||||||-|+.-||... +||-.-.
T Consensus 207 ~KNNPiLVGepGVGKTAIvEGLA~rI~~g~VP~~L~ 242 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR 242 (852)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 479974657999879999999999997699986774
No 191
>PRK06921 hypothetical protein; Provisional
Probab=97.46 E-value=0.00011 Score=49.69 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
...|++|+|+||+|||.||-++|+++
T Consensus 115 ~~~~l~f~G~~G~GKThLa~aIa~~L 140 (265)
T PRK06921 115 RKNSIALLGQPGSGKTHLLTAAANEL 140 (265)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 76627997289898899999999999
No 192
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.0015 Score=42.48 Aligned_cols=33 Identities=45% Similarity=0.691 Sum_probs=19.8
Q ss_pred CCEEEECCCCCCHHHHHHHHH-HHH------CCCEEEEEC
Q ss_conf 866996798886899999999-970------787797143
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLA-RLA------GAPFIKVEV 86 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA-~~l------~VPF~~~da 86 (437)
+-|.|+||||||||-..=-|| ++. .|-++.+|.
T Consensus 211 ~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~Dt 250 (412)
T PRK05703 211 GVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLDT 250 (412)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 3699988888756769999999999972998179998376
No 193
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family; InterPro: IPR014324 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding subunit DevA, found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The ABC transporter encoded by the devBCA operon is induced by nitrogen deficiency and is necessary for the formation of the laminated layer which envelops heterocysts , . It is thought to be involved in the export of either the heterocyst-specific glycolipids found in the laminated layer, or an enzyme essential for their formation..
Probab=97.43 E-value=5.8e-05 Score=51.60 Aligned_cols=46 Identities=30% Similarity=0.543 Sum_probs=27.6
Q ss_pred HHHHHHHHH-----HHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHH
Q ss_conf 999998778-----86408644446656686-69967988868999999999
Q gi|254780829|r 30 VAIALRNRW-----RRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLAR 75 (437)
Q Consensus 30 lavav~nhy-----~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~ 75 (437)
++|.=-||| .|.|+=-+..-+|.|-= |||.||||||||-|--=+.+
T Consensus 2 i~i~~LnHyyG~G~~rkQvL~di~L~i~~GEiViltGPSGSGKTTLLtLiG~ 53 (220)
T TIGR02982 2 ISIRNLNHYYGEGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGG 53 (220)
T ss_pred EEECCCCCEECCCCCCCEEECCCCEEECCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 5623344111468742100127631771764798437889846889998876
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=3.1e-05 Score=53.38 Aligned_cols=69 Identities=38% Similarity=0.612 Sum_probs=57.6
Q ss_pred HHHHHHHHHCCCCCHHCCCCCCCC--CCCCCCCHHHHHHHCCCCCCCCCC-----------CCCCCCCHHHHHHCCCCCC
Q ss_conf 875322210022210013576656--543321012234320466522112-----------4666420246640167542
Q gi|254780829|r 240 MVENYGIVFLDEFDKIVARDSGNG--IGVSREGVQRDLLPLVEGSSVSTK-----------YGSINTDHILFIASGAFHV 306 (437)
Q Consensus 240 ~~~~~~~~f~~~~~ki~~~~~~~~--~~~~~~g~~~~~~~~~e~~~v~~~-----------~~~~~~~~~~~i~~~~~~~ 306 (437)
.....|+.++|++|||+.++...+ .|+|.+|+|+.++.++|++..++- +..+.|.+++|||.|||.-
T Consensus 159 ~rAerGIIyIDEIDKIarkSen~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~G 238 (408)
T COG1219 159 ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAG 238 (408)
T ss_pred HHHHCCEEEEECHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEECCCCEEEEECCCCCC
T ss_conf 88828859985102542057898723436735899999999707510239998887984204887376346782440103
Q ss_pred CC
Q ss_conf 21
Q gi|254780829|r 307 SR 308 (437)
Q Consensus 307 ~k 308 (437)
+-
T Consensus 239 le 240 (408)
T COG1219 239 LE 240 (408)
T ss_pred HH
T ss_conf 99
No 195
>CHL00178 consensus
Probab=97.42 E-value=0.0003 Score=46.96 Aligned_cols=40 Identities=33% Similarity=0.590 Sum_probs=36.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf 6686699679888689999999997078779714341012
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE 91 (437)
..+|||+|||.|||.-+|+|.||.-.=|||+.+.-.+|-.
T Consensus 1457 pSkGILlIGsigTGRSYLVKsLAanSYvPlI~I~lnK~L~ 1496 (2133)
T CHL00178 1457 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1496 (2133)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEECHHHHHC
T ss_conf 6676379787766668999887642537518950788734
No 196
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.41 E-value=0.00011 Score=49.68 Aligned_cols=48 Identities=35% Similarity=0.595 Sum_probs=40.0
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 0486899999999998778864086444466566866996798886899999999970787
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
||||+.-.++|+-|+-+. .+....||.||=|||||-+||.+|+-++-.
T Consensus 18 vvGQe~v~~~L~nal~~~-------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~ 65 (515)
T COG2812 18 VVGQEHVVKTLSNALENG-------------RIAHAYLFSGPRGVGKTTIARILAKALNCE 65 (515)
T ss_pred HCCCHHHHHHHHHHHHHC-------------CCHHHHHHCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 636489999999999808-------------423336513777767104999999995688
No 197
>PRK02496 adk adenylate kinase; Provisional
Probab=97.41 E-value=0.00014 Score=49.09 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=24.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 86699679888689999999997078779
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPFI 82 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~ 82 (437)
+.|+|+|||||||+..|+.||+..+.+-+
T Consensus 2 ~riillG~PGSGKgTqa~~L~~~~~~~hi 30 (185)
T PRK02496 2 ARLIFLGPPGAGKGTQAVVLAEHLQIPHI 30 (185)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 18999799999989999999999699778
No 198
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.39 E-value=0.00033 Score=46.64 Aligned_cols=41 Identities=27% Similarity=0.543 Sum_probs=35.8
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf 66866996798886899999999970---787797143410121
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI 92 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~ 92 (437)
...+||..|.|||||.++||+|-+.. +-||+.+.|..++|-
T Consensus 163 s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 163 SDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHH
T ss_conf 79978997789875899999998607445899256334648988
No 199
>KOG0745 consensus
Probab=97.39 E-value=3.5e-05 Score=53.00 Aligned_cols=71 Identities=48% Similarity=0.597 Sum_probs=57.8
Q ss_pred HHHHHHHHCCCCCHHCCCCC--CCCCCCCCCCHHHHHHHCCCCCCCCC--C---------CCCCCCCHHHHHHCCCCCCC
Q ss_conf 75322210022210013576--65654332101223432046652211--2---------46664202466401675422
Q gi|254780829|r 241 VENYGIVFLDEFDKIVARDS--GNGIGVSREGVQRDLLPLVEGSSVST--K---------YGSINTDHILFIASGAFHVS 307 (437)
Q Consensus 241 ~~~~~~~f~~~~~ki~~~~~--~~~~~~~~~g~~~~~~~~~e~~~v~~--~---------~~~~~~~~~~~i~~~~~~~~ 307 (437)
-.+.||+|+|++|||+.... ..+.|++.+|+|+.++.++|++.|.+ + ...+.|..|+||+.|||..+
T Consensus 289 kAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~L 368 (564)
T KOG0745 289 KAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGL 368 (564)
T ss_pred HHHCCEEEEEHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCH
T ss_conf 88267388760124413676545444566266999999985262770267787778999858971366688803432356
Q ss_pred CCCC
Q ss_conf 1121
Q gi|254780829|r 308 RPAD 311 (437)
Q Consensus 308 k~~g 311 (437)
-..+
T Consensus 369 dk~I 372 (564)
T KOG0745 369 DKII 372 (564)
T ss_pred HHHH
T ss_conf 9898
No 200
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.37 E-value=0.002 Score=41.66 Aligned_cols=58 Identities=22% Similarity=0.457 Sum_probs=36.4
Q ss_pred CCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE---EECHHHHHHHHHHHH
Q ss_conf 25543345126-88615542467888764346889999999987---519689---984249999999999
Q gi|254780829|r 312 LLPEIQGRFPV-RVHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL---DFTEDSIDALADVAV 375 (437)
Q Consensus 312 lipE~~GR~p~-~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L---~ft~~Al~~IA~~A~ 375 (437)
+.|. .|++-+ -..+..++.+++++-. +++.|-..+|. .||+.+ .+|++.+.+.++.|-
T Consensus 399 ~~p~-~G~I~i~g~di~~i~~~~lr~~i-----~~V~Q~~~LF~~TI~eNI~~g~~~atdeei~~A~~~a~ 463 (588)
T PRK11174 399 FLPY-QGSLKINGIELRELDPESWRKHL-----SWVGQNPQLFHGTLRDNVLLANPDASDEQLQQALENAW 463 (588)
T ss_pred HCCC-CCEEEECCEECCCCCHHHHHHHE-----EEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 2898-83899999860308999999660-----35166677776629986533585433457999999862
No 201
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.37 E-value=5.5e-05 Score=51.72 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=27.3
Q ss_pred CCCCCCE-EEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE
Q ss_conf 6566866-996798886899999999970787--79714341012
Q gi|254780829|r 50 ELMPKNI-LLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE 91 (437)
Q Consensus 50 e~~psNi-LLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE 91 (437)
.+.|.-+ -|+||||||||-|-|.||++-..- -+..++...+-
T Consensus 27 ~i~~Gef~tlLGPSGcGKTTlLR~IAGfe~p~~G~I~l~g~~i~~ 71 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD 71 (352)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf 544886899989988888999999967778888659999999888
No 202
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.37 E-value=0.0004 Score=46.14 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
.++|||..|+||+|||-|+++|+.+.
T Consensus 159 ~r~NilI~G~TgSGKTTll~aL~~~i 184 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf 48719998888988999999998358
No 203
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.36 E-value=0.00059 Score=45.04 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=36.7
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 304868999999999987788640864444665668669967988868999999999707
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
.++|++++.+.+-..++.+= -.|.-+|+.||+|+|||-+|.++|+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~------------~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG------------RLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCCCCHHHHHHHHHHHHHCC------------CCCCCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 64332358999999998658------------8876100379999978999999999965
No 204
>PRK06217 hypothetical protein; Validated
Probab=97.35 E-value=0.00025 Score=47.44 Aligned_cols=33 Identities=24% Similarity=0.440 Sum_probs=30.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 866996798886899999999970787797143
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
+-|+.+|.+|+|||-||++||..+++|++..|.
T Consensus 2 ~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~ 34 (185)
T PRK06217 2 MRIHITGASGSGTTTLGAALAEALDLPHLDTDD 34 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEECCC
T ss_conf 679997899887899999999975989686455
No 205
>CHL00179 consensus
Probab=97.35 E-value=0.0002 Score=48.03 Aligned_cols=46 Identities=28% Similarity=0.437 Sum_probs=38.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEE--ECCCCCC
Q ss_conf 668669967988868999999999707877971434101--2122343
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT--EIGYVGR 97 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ft--E~gyvG~ 97 (437)
..+|||+|||.|||.-+|+|.||.-.=|||+.+.-.+|- ..||+.+
T Consensus 1599 pSkGILvIGsigTGRSYLVK~LAanSYvPlI~I~lnK~L~~~~~~~~~ 1646 (2262)
T CHL00179 1599 PSRGILVIGFIGTGRSYFVKYRVTNSYVPFITVFPNKFLDDNKGYLID 1646 (2262)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHCCCCCCCCC
T ss_conf 767627978776666899988764253751895177763358654456
No 206
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family; InterPro: IPR006001 This family of proteins includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases (IPR000577 from INTERPRO).; GO: 0016301 kinase activity, 0005975 carbohydrate metabolic process.
Probab=97.33 E-value=0.00014 Score=49.17 Aligned_cols=27 Identities=41% Similarity=0.700 Sum_probs=23.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC-----CCEE
Q ss_conf 69967988868999999999707-----8779
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG-----APFI 82 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~-----VPF~ 82 (437)
+.|+|+.|||||.+|++||..++ ++|+
T Consensus 1 ~VlmGvaG~GKs~~a~~l~~~lg~iyPd~~yi 32 (175)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGDIYPDAKYI 32 (175)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 96760278628899999999854315788756
No 207
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.32 E-value=0.0012 Score=43.16 Aligned_cols=19 Identities=53% Similarity=0.833 Sum_probs=13.8
Q ss_pred CCCCCE-EEECCCCCCHHHH
Q ss_conf 566866-9967988868999
Q gi|254780829|r 51 LMPKNI-LLVGPTGVGKTAI 69 (437)
Q Consensus 51 ~~psNi-LLiGPtGtGKTlL 69 (437)
+...+| .|+||||||||--
T Consensus 173 ~~~ggV~alVGPTGVGKTTT 192 (404)
T PRK06995 173 MERGGVFALVGPTGVGKTTT 192 (404)
T ss_pred HCCCCEEEEECCCCCCHHHH
T ss_conf 11475589866888763758
No 208
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.00096 Score=43.66 Aligned_cols=61 Identities=34% Similarity=0.407 Sum_probs=43.7
Q ss_pred HHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 99998620304868999999999987788640864444665668669967988868999999999707877971
Q gi|254780829|r 11 EIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 11 ~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
+++++|=+- ++-+.||| |--|||++-.. .|.=||+=|+||+|||.+|--||..||.+-++.
T Consensus 60 ~~~~~l~~k-~~~e~a~r------Y~lwR~ir~~~------~p~IILIGGasGVGkStIA~ElA~rLgI~~vis 120 (299)
T COG2074 60 EVYQKLLEK-GDPEVAKR------YLLWRRIRKMK------RPLIILIGGASGVGKSTIAGELARRLGIRSVIS 120 (299)
T ss_pred HHHHHHHHH-CCHHHHHH------HHHHHHHHCCC------CCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEC
T ss_conf 999999873-28799999------99999986157------875999617887772579999999729861004
No 209
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.31 E-value=0.00034 Score=46.56 Aligned_cols=35 Identities=26% Similarity=0.436 Sum_probs=27.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEE
Q ss_conf 69967988868999999999707877971434101
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT 90 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ft 90 (437)
|+++||||+|||.|++.|.+...-.+++++.|+=.
T Consensus 4 ivl~GpsG~GK~tl~~~l~~~~~~~~~~vs~TTR~ 38 (180)
T TIGR03263 4 IVISGPSGVGKSTLVKALLEEDPNLKFSISATTRK 38 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99989998899999999997689944887044689
No 210
>pfam01745 IPT Isopentenyl transferase. Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid.
Probab=97.31 E-value=0.0003 Score=46.96 Aligned_cols=32 Identities=38% Similarity=0.453 Sum_probs=29.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 69967988868999999999707877971434
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT 87 (437)
.|.+||||+|||-+|=.||+..+.|.+++|.-
T Consensus 4 ~~I~GpT~~GKT~~ai~lA~~~g~~iis~D~~ 35 (232)
T pfam01745 4 YLIWGATCTGKTAEAIALAKETGWPVIVLDRV 35 (232)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEECHH
T ss_conf 89978877771699999999959977962034
No 211
>pfam00493 MCM MCM2/3/5 family.
Probab=97.30 E-value=0.00047 Score=45.69 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=51.0
Q ss_pred HHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf 998620304868999999999987788640864-4446656686699679888689999999997078779714341012
Q gi|254780829|r 13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91 (437)
Q Consensus 13 ~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE 91 (437)
.+.+--.|-|.+..|+++..++.....+..-.. ..|.+ .||||+|-||||||-|.|.+++.+.- =+.+++..-|.
T Consensus 19 ~~siaP~i~G~~~vK~ai~l~l~gg~~~~~~~~~~~Rg~---ihiLLvGdPG~gKSqlLk~~~~~~pr-~~~tsg~~ss~ 94 (327)
T pfam00493 19 ARSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRLRGD---INVLLVGDPGTAKSQLLKYVAKLAPR-AVYTSGKGSSA 94 (327)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CEEEEECCCCCCHHHHHHHHHHHCCC-CEEECCCCCCC
T ss_conf 998597124987999999999808987658888620365---11898469981560999999986887-08831776656
Q ss_pred CC
Q ss_conf 12
Q gi|254780829|r 92 IG 93 (437)
Q Consensus 92 ~g 93 (437)
+|
T Consensus 95 ~G 96 (327)
T pfam00493 95 AG 96 (327)
T ss_pred CC
T ss_conf 77
No 212
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.001 Score=43.55 Aligned_cols=21 Identities=57% Similarity=0.964 Sum_probs=15.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 866996798886899999999970
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l 77 (437)
+-|.|+||||+|||- |+||.+
T Consensus 224 kvi~lVGPTGVGKTT---TiAKLA 244 (432)
T PRK12724 224 KVVFFVGPTGSGKTT---SIAKLA 244 (432)
T ss_pred EEEEEECCCCCCHHH---HHHHHH
T ss_conf 299998999988899---999999
No 213
>KOG3347 consensus
Probab=97.26 E-value=0.00032 Score=46.77 Aligned_cols=34 Identities=35% Similarity=0.645 Sum_probs=29.9
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 5668669967988868999999999707877971
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
-...|||+.|-||||||.+|.+||...+.|++-+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred HCCCCEEEECCCCCCCHHHHHHHHHHHCCCEEEH
T ss_conf 1378879867999880259999999739856745
No 214
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.26 E-value=0.00028 Score=47.15 Aligned_cols=36 Identities=36% Similarity=0.561 Sum_probs=30.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf 6996798886899999999970787797143410121
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~ 92 (437)
|-.-||||||||-+|+.||+.++.||+++ |+.|-|+
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsa-G~iFR~~ 38 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSA-GTIFREM 38 (179)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCEEEC-CHHHHHH
T ss_conf 99617999970279999999829715621-2799999
No 215
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.24 E-value=0.00085 Score=44.02 Aligned_cols=35 Identities=34% Similarity=0.616 Sum_probs=31.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 66866996798886899999999970787797143
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
.+.-|=|||..|+|||-+-|.||+.++.||+-.|.
T Consensus 132 ~~~rIaLIGlmGaGKSTvGr~LA~~Lg~pFvDlD~ 166 (304)
T PRK08154 132 RRPRIALIGLRGAGKSTLGRMLAARLGVPFVELNR 166 (304)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 77847988999998889999999995989778779
No 216
>PRK08727 hypothetical protein; Validated
Probab=97.24 E-value=0.00059 Score=45.04 Aligned_cols=85 Identities=21% Similarity=0.384 Sum_probs=46.9
Q ss_pred CCCCCCCCEE--EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 5543345126--88615542467888764346889999999987519689984249999999999840400123724679
Q gi|254780829|r 313 LPEIQGRFPV--RVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 (437)
Q Consensus 313 ipE~~GR~p~--~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~Lr 390 (437)
.|.+.-|+-. .+.+++++.+.+..+|.. .+...|+ ..+++.++.|.+.-- + --+.|.
T Consensus 144 l~DL~SRL~~~~~~~l~~~dD~~~~~iL~~-----------~a~~rgl--~l~~~V~~Yll~r~~-R-------~~~~l~ 202 (233)
T PRK08727 144 LPDLRSRLSQCIRIGLPVLDDVARAAVLRD-----------RAQRRGL--ALDEAAIDWLLTHGE-R-------ELAGLV 202 (233)
T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCC-C-------CHHHHH
T ss_conf 021999996692288578897999999999-----------9998699--999899999998568-8-------999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHH
Q ss_conf 99999867762127568776899859999989999
Q gi|254780829|r 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIGD 425 (437)
Q Consensus 391 tI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~~ 425 (437)
.+++++ ...+.. ..+ .||-..|++-+.+
T Consensus 203 ~~l~~L-D~~SL~----~kr--~iTip~vk~vL~e 230 (233)
T PRK08727 203 ALLDRL-DRESLA----AKR--RITVPFLRRVLEE 230 (233)
T ss_pred HHHHHH-HHHHHH----CCC--CCCHHHHHHHHHH
T ss_conf 999999-999998----089--8889999999972
No 217
>TIGR00602 rad24 checkpoint protein rad24; InterPro: IPR004582 To be effective as a mechanism that preserves genomic integrity, the DNA damage checkpoint must be extremely sensitive in its ability to detect DNA damage. In Saccharomyces cerevisiae the Ddc1/Rad17/Mec3 complex and Rad24 are DNA damage checkpoint components which may promote checkpoint activation by "sensing" DNA damage directly . Rad24 shares sequence homology with RF-c, a protein that recognises DNA template/RNA primer hybrids during DNA replication. The Ddc1 complex has structural homology to proliferating-cell nuclear antigen (PCNA), which clamps onto DNA and confers processivity to DNA polymerases delta and epsilon. Rad24 is postulated to recognise DNA lesions and then recruit the Ddc1 complex to generate checkpoint signals. ; GO: 0006281 DNA repair, 0007049 cell cycle, 0005634 nucleus.
Probab=97.22 E-value=0.00024 Score=47.62 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 6996798886899999999970787
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
.|+.||||||||-..|-|||+++.-
T Consensus 121 LLi~GPsGCgKsT~~k~LsKelg~~ 145 (670)
T TIGR00602 121 LLITGPSGCGKSTTIKILSKELGIK 145 (670)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 8841755884478999998886445
No 218
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.21 E-value=0.0032 Score=40.25 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=21.6
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE----EECHHHHHHHHHHHH
Q ss_conf 8615542467888764346889999999987---519689----984249999999999
Q gi|254780829|r 324 VHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL----DFTEDSIDALADVAV 375 (437)
Q Consensus 324 v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L----~ft~~Al~~IA~~A~ 375 (437)
+.++.++.+++.+.. +.+.|-..+|. -+|+.+ .+|++-+.+.++.|.
T Consensus 404 ~di~~~~~~~lr~~i-----~~V~Q~~~lF~~TI~eNi~~~~~~~~~~~~i~~a~~~a~ 457 (581)
T PRK11176 404 HDLRDYTLASLRNQV-----ALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAY 457 (581)
T ss_pred EEHHHCCHHHHHCCC-----CCCCCCCEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 851214766650345-----560777611077299997226743245689999999877
No 219
>KOG2170 consensus
Probab=97.18 E-value=0.00082 Score=44.12 Aligned_cols=61 Identities=28% Similarity=0.403 Sum_probs=48.0
Q ss_pred HHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 99999862030486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 10 REIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 10 ~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
..+..-|++.+.||.-||..+--|+..||.--+-.+ |==.=|=|+|||||-+.++-||+-+
T Consensus 74 ~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~p~K-------PLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170 74 DGLEKDLARALFGQHLAKQLVVNALKSHWANPNPRK-------PLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCC-------CEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 678999999863208799999999999862899998-------7589830899875648999999998
No 220
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.16 E-value=0.00074 Score=44.41 Aligned_cols=63 Identities=22% Similarity=0.184 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 76888999998620304868999999999987788640864444665668669967988868999999999707877
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPF 81 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF 81 (437)
+.|++.-...|+=.-|||||.-|++|--.. .+. .=.|+|+-|+-|+|||-++|+||..|..=-
T Consensus 4 ~~~~~~~r~~~pf~aivGqd~lk~aL~l~a--------v~P------~iggvLI~G~kGtaKSt~~Rala~LLp~~~ 66 (423)
T COG1239 4 RTVSEEIRENLPFTAIVGQDPLKLALGLNA--------VDP------QIGGALIAGEKGTAKSTLARALADLLPEIE 66 (423)
T ss_pred CCHHHHHHHCCCHHHHCCCHHHHHHHHHHH--------CCC------CCCEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 215577775166565437537778876530--------263------104268766887527799999998679633
No 221
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.16 E-value=0.0004 Score=46.11 Aligned_cols=27 Identities=41% Similarity=0.537 Sum_probs=24.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 668669967988868999999999707
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
..+|||..||||+|||-+.++|+.+..
T Consensus 24 ~~~nIlIsG~tGSGKTTll~al~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 599899989999989999999996133
No 222
>PRK06893 DNA replication initiation factor; Validated
Probab=97.16 E-value=0.0013 Score=42.91 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=50.6
Q ss_pred CCCCCCCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 554334512--688615542467888764346889999999987519689984249999999999840400123724679
Q gi|254780829|r 313 LPEIQGRFP--VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQ 390 (437)
Q Consensus 313 ipE~~GR~p--~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~Lr 390 (437)
.|.+.-|+- ..+.+++++.+.+..||.. .++..|+ .++++.++.|++.--. -.|.|-
T Consensus 143 l~DL~SRl~~~~~~~i~~~dd~~~~~iL~~-----------~a~~rgl--~l~~~v~~yl~~r~~R--------~~~~l~ 201 (229)
T PRK06893 143 LPDLASRLTWGEIYQLNDLTDEQKIEVLQR-----------NAYQRGI--ELSDETANFLLKRLDR--------DMHTLF 201 (229)
T ss_pred HHHHHHHHHCCEEEEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHHCC--------CHHHHH
T ss_conf 267999996883699667775799999999-----------9996499--9998999999998347--------899999
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHH
Q ss_conf 9999986776212756877689985999998999
Q gi|254780829|r 391 TVMERVLEDISFSASDLQEKTVVIDAEYVRLHIG 424 (437)
Q Consensus 391 tI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l~ 424 (437)
.+++++-.. +.. ..+ .||-..|++-++
T Consensus 202 ~~l~~Ld~~-sl~----~kr--~iTiplvkevL~ 228 (229)
T PRK06893 202 DALDLLDKA-SLQ----AQR--KLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHH-HHH----HCC--CCCHHHHHHHHC
T ss_conf 999999999-998----089--999999999868
No 223
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=97.16 E-value=0.00037 Score=46.34 Aligned_cols=26 Identities=54% Similarity=0.772 Sum_probs=23.4
Q ss_pred CCCCEEEECCCCCCHHHHHHHH-HHHH
Q ss_conf 6686699679888689999999-9970
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRL-ARLA 77 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktL-A~~l 77 (437)
-++|||.+|=||||||-||.|| |+.+
T Consensus 138 ar~NIlv~GGTGSGKTTLaNAlla~I~ 164 (315)
T TIGR02782 138 ARKNILVVGGTGSGKTTLANALLAEIA 164 (315)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 129889981458857999999999885
No 224
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=97.15 E-value=0.00034 Score=46.62 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=25.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC--CCEEEEEC
Q ss_conf 669967988868999999999707--87797143
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG--APFIKVEV 86 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~--VPF~~~da 86 (437)
-|-.+||||||||-|+++|+|+++ -+=+..|+
T Consensus 389 r~Ai~G~SG~GKsTLL~~L~G~l~P~~G~vtl~G 422 (566)
T TIGR02868 389 RVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDG 422 (566)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECC
T ss_conf 0898668876578999999840289999178777
No 225
>pfam06414 Zeta_toxin Zeta toxin. This family consists of several bacterial zeta toxin proteins. Zeta toxin is thought to be part of a postregulational killing system in bacteria. It relies on antitoxin/toxin systems that secure stable inheritance of low and medium copy number plasmids during cell division and kill cells that have lost the plasmid.
Probab=97.14 E-value=0.0033 Score=40.23 Aligned_cols=43 Identities=26% Similarity=0.478 Sum_probs=35.0
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCEEEC
Q ss_conf 6566866996798886899999999970-787797143410121
Q gi|254780829|r 50 ELMPKNILLVGPTGVGKTAISRRLARLA-GAPFIKVEVTKFTEI 92 (437)
Q Consensus 50 e~~psNiLLiGPtGtGKTlLAktLA~~l-~VPF~~~daT~ftE~ 92 (437)
+-.|+=|+|-|+||+|||.+++.+...+ +-.++.+|+-+|-+.
T Consensus 9 ~~~Pkai~laG~pGAGKS~~~~~~~~~~~~~~~v~In~D~~r~~ 52 (191)
T pfam06414 9 QERPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDELRTY 52 (191)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEECCHHHHHH
T ss_conf 76987999957998888999999987537899389713587887
No 226
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.00089 Score=43.88 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=29.7
Q ss_pred CCCC--EEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCEEE
Q ss_conf 6686--69967988868999999999707877-9714341012
Q gi|254780829|r 52 MPKN--ILLVGPTGVGKTAISRRLARLAGAPF-IKVEVTKFTE 91 (437)
Q Consensus 52 ~psN--iLLiGPtGtGKTlLAktLA~~l~VPF-~~~daT~ftE 91 (437)
.++| |+++||||+|||-|++.|.+...-.| +.+++|+=..
T Consensus 4 ~~~g~livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~p 46 (208)
T PRK00300 4 MRRGLLIVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRAP 46 (208)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC
T ss_conf 4188389999999889999999999729986899897468898
No 227
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=97.12 E-value=0.0005 Score=45.52 Aligned_cols=28 Identities=36% Similarity=0.414 Sum_probs=23.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6686699679888689999999997078
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
..+|||..||||||||-+.+++..++.-
T Consensus 138 ~~~~ilIsG~TGSGKTT~l~all~~i~~ 165 (283)
T pfam00437 138 ARGNILVSGGTGSGKTTLLYALLNEINT 165 (283)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 1975999889999889999999984087
No 228
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.11 E-value=0.0011 Score=43.32 Aligned_cols=84 Identities=17% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCCCCCCCE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 2554334512--68861554246788876434688999999998751968998424999999999984040012372467
Q gi|254780829|r 312 LLPEIQGRFP--VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRL 389 (437)
Q Consensus 312 lipE~~GR~p--~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~L 389 (437)
+.|.+.-|+- .++.+++++.++...||.. .....|+ .++++.++.|++..-. --|.|
T Consensus 148 ~l~DL~SRl~~g~~~~i~~~dde~~~~iL~~-----------~a~~rgl--~l~~~V~~yl~~~~~R--------~~~~L 206 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQL-----------RARLRGF--ELPEDVGRFLLKRLDR--------EMRTL 206 (235)
T ss_pred CCHHHHHHHHCCCEEEECCCCHHHHHHHHHH-----------HHHHCCC--CCCHHHHHHHHHHCCC--------CHHHH
T ss_conf 1288999995697278559998999999999-----------9997399--9998999999986158--------89999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHH
Q ss_conf 9999998677621275687768998599999899
Q gi|254780829|r 390 QTVMERVLEDISFSASDLQEKTVVIDAEYVRLHI 423 (437)
Q Consensus 390 rtI~E~~l~d~~fe~p~~~~~~v~Id~~~V~~~l 423 (437)
..+++++-. .+. ...-.||-..|++.+
T Consensus 207 ~~~l~~Ld~-~Sl------~~kr~iTip~vkevL 233 (235)
T PRK08084 207 FMTLDQLDK-ASI------TAQRKLTIPFVKEIL 233 (235)
T ss_pred HHHHHHHHH-HHH------HCCCCCCHHHHHHHH
T ss_conf 999999999-999------819999999999996
No 229
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=97.10 E-value=0.00055 Score=45.27 Aligned_cols=49 Identities=29% Similarity=0.563 Sum_probs=36.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCEEECCCCCCCHHHHHHHHHH
Q ss_conf 6996798886899999999970-7877971434101212234310134678887
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA-GAPFIKVEVTKFTEIGYVGRNVEQIIRDLVD 108 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l-~VPF~~~daT~ftE~gyvG~DVes~i~~l~~ 108 (437)
-=|||||||||+-+-|+|=++- -||=++++| ++-|-|+|+-+---++++
T Consensus 30 TAlIGPSGCGKSTlLR~lNRMnDl~~~~r~~G----~v~f~G~dIy~~~~D~~~ 79 (248)
T TIGR00972 30 TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG----KVLFDGQDIYDKKIDVVE 79 (248)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEE----EEEECCCCCCCCCCCHHH
T ss_conf 89877889867899999887764078816888----898645114565668788
No 230
>PRK13808 adenylate kinase; Provisional
Probab=97.10 E-value=0.0015 Score=42.46 Aligned_cols=30 Identities=30% Similarity=0.595 Sum_probs=27.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 669967988868999999999707877971
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
||+|+||||+||.-.|+.|++..+.|-++.
T Consensus 2 rIIlLGPPGsGKGTQA~~L~~~~gi~hIST 31 (297)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (297)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCEECH
T ss_conf 599978999985899999999869886758
No 231
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.09 E-value=0.00046 Score=45.77 Aligned_cols=26 Identities=42% Similarity=0.615 Sum_probs=23.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
.++|||..|+||||||-++++|..+.
T Consensus 161 ~r~NIlIsGgTGSGKTTllnALl~~I 186 (343)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAI 186 (343)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCC
T ss_conf 69889998889861999999999628
No 232
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.09 E-value=0.0029 Score=40.55 Aligned_cols=27 Identities=44% Similarity=0.589 Sum_probs=19.7
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 665668669967988868999999999
Q gi|254780829|r 49 DELMPKNILLVGPTGVGKTAISRRLAR 75 (437)
Q Consensus 49 ~e~~psNiLLiGPtGtGKTlLAktLA~ 75 (437)
.+..|+-|+|+||+|+|||--+=-||.
T Consensus 71 ~~~~~~vI~lvG~~G~GKTTT~AKLA~ 97 (270)
T PRK06731 71 FEKEVQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 679981899988898988999999999
No 233
>PRK03839 putative kinase; Provisional
Probab=97.07 E-value=0.00063 Score=44.87 Aligned_cols=30 Identities=40% Similarity=0.638 Sum_probs=25.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 669967988868999999999707877971
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
.|++.|.||||||-+|+.||..++..++.+
T Consensus 2 ~I~ITGTPGtGKTTva~~La~~lg~~~i~v 31 (180)
T PRK03839 2 IIAITGTPGVGKTTISKLLAEKLGYEYVNL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEEEEH
T ss_conf 899978999998999999999769879879
No 234
>TIGR00764 lon_rel ATP-dependent protease, putative; InterPro: IPR004663 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the archaeal lon protease homologs, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein conserved region.; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0030163 protein catabolic process.
Probab=97.06 E-value=0.00092 Score=43.80 Aligned_cols=84 Identities=18% Similarity=0.244 Sum_probs=54.8
Q ss_pred CCCHHHHHHCCCCCCCCCCCCCCCCCCCCE---EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHH
Q ss_conf 420246640167542211212554334512---68861554246788876434688999999998751968998424999
Q gi|254780829|r 292 NTDHILFIASGAFHVSRPADLLPEIQGRFP---VRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSID 368 (437)
Q Consensus 292 ~~~~~~~i~~~~~~~~k~~glipE~~GR~p---~~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~ 368 (437)
..--+.|+.-.+-..-..+++-|-+..|+. .-+.+...-.+. .+-+..++.-..+....+|---.|+.+++.
T Consensus 281 ~p~pcdf~l~~~g~~~~~~~~~~~l~~~~~g~gy~~~~~~~~~~~-----~~~~~~l~~f~~~~~~~~g~~~~~~~~~~~ 355 (662)
T TIGR00764 281 EPVPCDFILVASGNLDDLEGLHPALRSRIRGYGYEVYLKDTMPDT-----PENRDKLVQFVAQEVKKDGRLPHFTRDAVE 355 (662)
T ss_pred CCCCCCEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEECCCCCCC-----HHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 566621445514654565410045665430144168872667775-----024789999999987624788864267899
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999984040
Q gi|254780829|r 369 ALADVAVNLNST 380 (437)
Q Consensus 369 ~IA~~A~~~~t~ 380 (437)
++.+.|..+...
T Consensus 356 ~~~~~~~~~~g~ 367 (662)
T TIGR00764 356 EIVREAQRRAGR 367 (662)
T ss_pred HHHHHHHHHCCC
T ss_conf 999998862276
No 235
>PRK06620 hypothetical protein; Validated
Probab=97.06 E-value=0.00067 Score=44.69 Aligned_cols=60 Identities=22% Similarity=0.396 Sum_probs=36.4
Q ss_pred HHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf 86203048689999999999877886408644446656686699679888689999999997078779
Q gi|254780829|r 15 ELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFI 82 (437)
Q Consensus 15 ~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~ 82 (437)
..|.|+||-... .|++.-..| +..-......+.+++.||+|||||.|++..++..++-+.
T Consensus 14 ~~~dF~vs~~N~---~A~~~i~~w-----p~~~~~~~~~~~l~I~Gp~gSGKTHL~~i~~~~~~a~~~ 73 (214)
T PRK06620 14 HPDEFIVSSSND---QAYNIIKNW-----QCMFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII 73 (214)
T ss_pred CCCCEEECCCHH---HHHHHHHHC-----HHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCEEE
T ss_conf 865868768699---999999836-----302566865555999879999889999999998285881
No 236
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0012 Score=42.98 Aligned_cols=99 Identities=24% Similarity=0.322 Sum_probs=54.1
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEE--------CCCCCCCHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 66866996798886899999999970---78779714341012--------12234310134678887652127899-85
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE--------IGYVGRNVEQIIRDLVDVAINIVRES-RR 119 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE--------~gyvG~DVes~i~~l~~~a~~~~~~a-~~ 119 (437)
.|+|-+|+|+||+|||-++.-||.-. +||=.-.+.+-|+= +.|-|+=-+.+ ..+++. ++++ ..
T Consensus 190 ~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRl-k~vl~e----v~~~~~v 264 (786)
T COG0542 190 TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERL-KAVLKE----VEKSKNV 264 (786)
T ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEECHHHHHCCCCCCCCHHHHH-HHHHHH----HHCCCCE
T ss_conf 88998476689888999998999997469999787588799714876746465357389999-999999----8517984
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 65498888688875555311432110046689889861688
Q gi|254780829|r 120 DEVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEI 160 (437)
Q Consensus 120 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (437)
+.|++++ ..+.+++...++..+..+.+-..|-.+++
T Consensus 265 ILFIDEi-----HtiVGAG~~~g~a~DAaNiLKPaLARGeL 300 (786)
T COG0542 265 ILFIDEI-----HTIVGAGATEGGAMDAANLLKPALARGEL 300 (786)
T ss_pred EEEEECH-----HHHCCCCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf 9998235-----54057776666651256646778745873
No 237
>PHA02244 ATPase-like protein
Probab=97.05 E-value=0.00076 Score=44.33 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=39.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE--ECCCEEECCCCCCCHHHHHHHHH
Q ss_conf 69967988868999999999707877971--43410121223431013467888
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKV--EVTKFTEIGYVGRNVEQIIRDLV 107 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~--daT~ftE~gyvG~DVes~i~~l~ 107 (437)
|-|.||-|||||.+|+.+|+.|+.||... =+++|--.||+-..-.-.-..++
T Consensus 122 V~L~G~AGsGKt~~A~qIA~aLdl~FYf~gAI~~ef~L~Gf~DAnG~yh~T~f~ 175 (383)
T PHA02244 122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFY 175 (383)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCEECCCCCEECCHHH
T ss_conf 699758888634899999998588824413230134301256489967263899
No 238
>TIGR01351 adk adenylate kinases; InterPro: IPR006259 Most members of this family are known or believed to be adenylate kinase. Adenylate kinase (ADK) 2.7.4.3 from EC converts ATP + AMP to ADP + ADP, that is, it uses ATP as a phosphate donor for AMP. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). However, some members accept other nucleotide triphosphates as donors, and may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (2.7.4.10 from EC) is Q9UIJ7 from SWISSPROT, a GTP:AMP phosphotransferase that has been identified in bovine heart and human cells and derived from mitrochondrail GTP AMP that is specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate .This family is designated subfamily rather than equivalog for this reason. ADK has also been identified in different bacterial species and in yeast . Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge. ; GO: 0005524 ATP binding, 0016776 phosphotransferase activity phosphate group as acceptor, 0019201 nucleotide kinase activity, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=97.03 E-value=0.0006 Score=45.00 Aligned_cols=30 Identities=37% Similarity=0.742 Sum_probs=27.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 669967988868999999999707877971
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
+++|+||||+||=-.|+.||+..+.|-++.
T Consensus 1 ~~~~lGpPGsGKGTQa~~i~~~~gl~HIST 30 (232)
T TIGR01351 1 RLILLGPPGSGKGTQAKRIAEKLGLPHIST 30 (232)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 946755989876679999998608850202
No 239
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.03 E-value=0.00076 Score=44.34 Aligned_cols=34 Identities=41% Similarity=0.659 Sum_probs=21.8
Q ss_pred CCCEEEECCCCCCHHH-HHHHHHHHH------CCCEEEEEC
Q ss_conf 6866996798886899-999999970------787797143
Q gi|254780829|r 53 PKNILLVGPTGVGKTA-ISRRLARLA------GAPFIKVEV 86 (437)
Q Consensus 53 psNiLLiGPtGtGKTl-LAktLA~~l------~VPF~~~da 86 (437)
++.|.|+||||+|||- |||-=|++. .|-|++.|.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 85799989988758879999999997532576068997144
No 240
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.00051 Score=45.48 Aligned_cols=27 Identities=44% Similarity=0.621 Sum_probs=24.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 668669967988868999999999707
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
-.+|.|++||||||||-|.|-+|+.+.
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 722469965998870779999999863
No 241
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.02 E-value=0.0017 Score=41.99 Aligned_cols=22 Identities=55% Similarity=0.730 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
|+|+||||+|||--.=-||..+
T Consensus 3 i~lvGptGvGKTTTiaKLA~~~ 24 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999999
No 242
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.01 E-value=0.0017 Score=42.14 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=23.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
.++|||..|+||+|||-++++|..++
T Consensus 148 ~r~nilI~G~TgsGKTTll~all~~i 173 (320)
T PRK13894 148 AHRNILVIGGTGSGKTTLVNAIINEM 173 (320)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 28758998588865689999998632
No 243
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.01 E-value=0.0079 Score=37.73 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=25.0
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE--EECHHHHHHHHHHHH
Q ss_conf 8615542467888764346889999999987---519689--984249999999999
Q gi|254780829|r 324 VHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL--DFTEDSIDALADVAV 375 (437)
Q Consensus 324 v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L--~ft~~Al~~IA~~A~ 375 (437)
+.++.++.+++.+.. +.+.|-..+|. .+|+.+ .+|++.+.+.++.|-
T Consensus 403 ~di~~i~~~~lR~~i-----~~V~Q~~~LF~gTI~eNi~~g~~~~~~~i~~a~~~a~ 454 (593)
T PRK10790 403 RPLSSLSHSVLRQGV-----AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQ 454 (593)
T ss_pred EECCCCCHHHHHHCC-----CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 324424688886315-----7516665145652999977600236799999999977
No 244
>KOG0991 consensus
Probab=97.00 E-value=0.0013 Score=42.75 Aligned_cols=45 Identities=31% Similarity=0.507 Sum_probs=37.4
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 30486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
-|||-++....|+|-... .-. .|+++.||||||||--+..||++|
T Consensus 28 dIVGNe~tv~rl~via~~-------------gnm-P~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991 28 DIVGNEDTVERLSVIAKE-------------GNM-PNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred HHHCCHHHHHHHHHHHHC-------------CCC-CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 821779899999999972-------------899-866752799986164899999998
No 245
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.00049 Score=45.55 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=26.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCCEEE
Q ss_conf 699679888689999999997078--779714341012
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGA--PFIKVEVTKFTE 91 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~V--PF~~~daT~ftE 91 (437)
+-|+||||||||-+-|.+|+.... =-+..++..-|.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~p~~G~I~i~g~~vt~ 69 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD 69 (338)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf 99989998888999999968877887159999999998
No 246
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.96 E-value=0.0019 Score=41.76 Aligned_cols=23 Identities=52% Similarity=0.723 Sum_probs=16.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 68669967988868999999999
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLAR 75 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~ 75 (437)
|.=|+|+||||+|||--+=-||.
T Consensus 1 P~vi~lvGptGvGKTTTiaKLAa 23 (196)
T pfam00448 1 PNVILLVGLQGSGKTTTIAKLAA 23 (196)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 96999989999988999999999
No 247
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.93 E-value=0.0012 Score=43.01 Aligned_cols=34 Identities=38% Similarity=0.600 Sum_probs=25.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCE
Q ss_conf 69967988868999999999707877-97143410
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPF-IKVEVTKF 89 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF-~~~daT~f 89 (437)
|+++||||+|||-|++.|.+...-.| +.+..|+=
T Consensus 2 ivi~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR 36 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTR 36 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 99999998899999999985198776875660378
No 248
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=96.88 E-value=0.0015 Score=42.46 Aligned_cols=35 Identities=37% Similarity=0.479 Sum_probs=25.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEE-EEECCCEE
Q ss_conf 699679888689999999997078779-71434101
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFI-KVEVTKFT 90 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~-~~daT~ft 90 (437)
|+|+||+|+|||.|++.|.+...--|. .++.|+=.
T Consensus 4 ivl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~ 39 (182)
T pfam00625 4 IVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRP 39 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 999898999999999999984866734457655479
No 249
>KOG2543 consensus
Probab=96.87 E-value=0.0014 Score=42.64 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=38.3
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCC-EE
Q ss_conf 446656686699679888689999999997078779714341-01
Q gi|254780829|r 47 LRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTK-FT 90 (437)
Q Consensus 47 ~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~-ft 90 (437)
.++...||++.+.|-+|||||++.|++=+.+++|++.+.|-+ ||
T Consensus 24 ~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft 68 (438)
T KOG2543 24 NNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFT 68 (438)
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEHHHHCC
T ss_conf 898666515799614787455999999860378630541577516
No 250
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.86 E-value=0.00088 Score=43.93 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
+|+.||+|||||.|-|+||+.=
T Consensus 422 llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 422 LLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9987899987889999996458
No 251
>pfam03215 Rad17 Rad17 cell cycle checkpoint protein.
Probab=96.86 E-value=0.0011 Score=43.39 Aligned_cols=27 Identities=33% Similarity=0.635 Sum_probs=23.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 669967988868999999999707877
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPF 81 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF 81 (437)
=.||.||+|||||-..+.||++++.-.
T Consensus 47 iLlLtGPaG~GKTTTI~lLAkeLG~ei 73 (490)
T pfam03215 47 ILLLTGPSGCGKSTTVKVLSKELGIEI 73 (490)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCEE
T ss_conf 899879899889999999999759689
No 252
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.85 E-value=0.001 Score=43.46 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=23.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
..+|||..|+||+|||-|+++|..+.
T Consensus 143 ~r~nilVsGgTGSGKTTllnaL~~~i 168 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 18968999177775689999999864
No 253
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB; InterPro: IPR013374 This model describes a protein involved in type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly, and is closely related to GspE (IPR013369 from INTERPRO) of type II secretion systems (also referred to as the main terminal branch of the general secretion pathway). Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0009297 pilus biogenesis.
Probab=96.82 E-value=0.00048 Score=45.64 Aligned_cols=50 Identities=8% Similarity=-0.066 Sum_probs=25.1
Q ss_pred EEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCC
Q ss_conf 0000010235533278886303101112367888753222100222100135
Q gi|254780829|r 207 KIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVAR 258 (437)
Q Consensus 207 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~ 258 (437)
..|+....-+++...+-+.||.+. |..-=+.+--.+.+.......+.|+.
T Consensus 419 TGHLVlSTLHTNdAp~Tl~RL~NM--GiapFNIASSV~LI~AQRLARRLCs~ 468 (577)
T TIGR02538 419 TGHLVLSTLHTNDAPETLARLVNM--GIAPFNIASSVNLIMAQRLARRLCSH 468 (577)
T ss_pred CCCCEECCCCCCCHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 487210100016858999999753--84137999999999999755240313
No 254
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=96.81 E-value=0.0012 Score=43.12 Aligned_cols=55 Identities=31% Similarity=0.522 Sum_probs=40.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCC----------CCHHHHHHHHHHHHHHHH
Q ss_conf 69967988868999999999707877971434101212234----------310134678887652127
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVG----------RNVEQIIRDLVDVAINIV 114 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG----------~DVes~i~~l~~~a~~~~ 114 (437)
|.++|||+||||-||=-||+.++|=.+.+|--.- |-| .+-+.+.++|++-.+...
T Consensus 2 i~i~GpTAvGKs~L~i~La~~lnaEiI~~DS~qi----YK~~dIgtaKp~~~e~~~ipH~l~Dildp~e 66 (307)
T TIGR00174 2 IVIMGPTAVGKSNLAIQLAKKLNAEIISVDSMQI----YKGMDIGTAKPSLQERKGIPHHLIDILDPSE 66 (307)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCEEEEECCCHHH----HCCCCCCCCCCCHHHHCCCCCEEEECCCCCC
T ss_conf 6774088554778999988768957874350232----2378753578896875349815851347120
No 255
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.80 E-value=0.011 Score=36.78 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=23.4
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE---EECHHHHHHHHHHH
Q ss_conf 8615542467888764346889999999987---519689---98424999999999
Q gi|254780829|r 324 VHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL---DFTEDSIDALADVA 374 (437)
Q Consensus 324 v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L---~ft~~Al~~IA~~A 374 (437)
.++..++.+++++-. +.+.|-..+|. .||+.+ .+|++-+.+.++.|
T Consensus 377 ~di~~i~~~~lR~~I-----~~V~Q~~~LF~~TI~eNI~lg~~~~~~eei~~a~~~a 428 (569)
T PRK10789 377 IPLTKLQLDSWRSRL-----AVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLA 428 (569)
T ss_pred EECCCCCHHHHHHCC-----CCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 013425768886314-----7658875025662999986579776545899999985
No 256
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=96.80 E-value=0.0011 Score=43.28 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=44.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 866996798886899999999970787797143410121223431013467888765212
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINI 113 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~i~~l~~~a~~~ 113 (437)
+.|+++||--||||-|++.||+..+.||+-==|=+|.|--+.|.+..--..++...|.+.
T Consensus 232 KkVvIlG~ESTGKTTL~~~LA~~ynT~~v~EYgReY~~ek~~~~e~~l~~~D~~~IA~gQ 291 (411)
T PRK08099 232 RTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEIALQYSDYDKIALGH 291 (411)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 689998999888899999999997899518989999999718974568888999999999
No 257
>pfam00406 ADK Adenylate kinase.
Probab=96.79 E-value=0.00081 Score=44.14 Aligned_cols=26 Identities=31% Similarity=0.607 Sum_probs=23.4
Q ss_pred EECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 96798886899999999970787797
Q gi|254780829|r 58 LVGPTGVGKTAISRRLARLAGAPFIK 83 (437)
Q Consensus 58 LiGPtGtGKTlLAktLA~~l~VPF~~ 83 (437)
++|||||||+-.|+.||+..+++.++
T Consensus 1 i~G~PGsGKgTqa~~La~~~~~~~is 26 (186)
T pfam00406 1 LLGPPGAGKGTQAERIVQKYGIVHLS 26 (186)
T ss_pred CCCCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 91889898599999999985990676
No 258
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.79 E-value=0.0027 Score=40.79 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=30.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEE
Q ss_conf 6996798886899999999970---78779714341012
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE 91 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE 91 (437)
|-|+|.||+|||.||+.|.+.+ +.|.+..||-.+..
T Consensus 7 iWltGlsgSGKTTia~~l~~~L~~~~~~~~~LDGD~lR~ 45 (175)
T PRK00889 7 VWFTGLSGAGKTTISHALAEKLRARGYPVEVLDGDIVRT 45 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 998898999999999999999998699679977688887
No 259
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.79 E-value=0.0015 Score=42.40 Aligned_cols=25 Identities=40% Similarity=0.682 Sum_probs=22.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 6996798886899999999970787
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
+-++||+|||||-|.|.+++....+
T Consensus 29 ~~iiG~SGsGKSTll~~i~gL~~~~ 53 (227)
T cd03260 29 TALIGPSGCGKSTLLRLLNRLNDLI 53 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 9999999981999999997445026
No 260
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=96.77 E-value=0.001 Score=43.47 Aligned_cols=23 Identities=48% Similarity=0.884 Sum_probs=19.0
Q ss_pred CCCC-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6686-6996798886899999999970
Q gi|254780829|r 52 MPKN-ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psN-iLLiGPtGtGKTlLAktLA~~l 77 (437)
.|.| ||..||||||||- |||-+.
T Consensus 125 ~~~GLiLVTGPTGSGKST---TlAsmI 148 (350)
T TIGR01420 125 RPRGLILVTGPTGSGKST---TLASMI 148 (350)
T ss_pred CCCCCEEEECCCCCCHHH---HHHHHH
T ss_conf 669938987688986789---999999
No 261
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.76 E-value=0.0011 Score=43.39 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
|+|.||||+|||-.||-||++|.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99826999880178999999999
No 262
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0092 Score=37.30 Aligned_cols=23 Identities=52% Similarity=0.794 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 66866996798886899999999
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLA 74 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA 74 (437)
.|+=+.|+||||+|||--.=-||
T Consensus 173 k~~vi~lVGPTGvGKTTTiAKLA 195 (388)
T PRK12723 173 KKRIFILVGPTGVGKTTTIAKLA 195 (388)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 76289998998875787999999
No 263
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=96.76 E-value=0.0061 Score=38.45 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=25.3
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCE
Q ss_conf 656686-69967988868999999999707877
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAGAPF 81 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF 81 (437)
++.+.- +=++||+|||||.|++++.+.+.-|-
T Consensus 29 ~i~~GEilgivGeSGsGKSTl~~~ilgll~~~~ 61 (327)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPG 61 (327)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCC
T ss_conf 988999999999998789999999974889899
No 264
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=96.73 E-value=0.00093 Score=43.75 Aligned_cols=41 Identities=29% Similarity=0.474 Sum_probs=27.6
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE
Q ss_conf 56686-6996798886899999999970787--79714341012
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE 91 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE 91 (437)
+.+.- +-|+||+|||||-|.|.+|++...- =+..++...+.
T Consensus 29 i~~Ge~~~llGpSG~GKTTlLr~iaGl~~p~~G~I~~~g~~v~~ 72 (351)
T PRK11432 29 IKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTSGQIFIDGEDVTK 72 (351)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCC
T ss_conf 88998999999996499999999976999883699999999999
No 265
>PRK10536 hypothetical protein; Provisional
Probab=96.73 E-value=0.0047 Score=39.21 Aligned_cols=24 Identities=42% Similarity=0.412 Sum_probs=19.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 866996798886899999999970
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l 77 (437)
.-+..+||.|||||+||=+.|-.+
T Consensus 75 ~ivf~~GpAGTGKT~lA~a~Al~~ 98 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 839998999875899999999999
No 266
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.73 E-value=0.0033 Score=40.17 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=31.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf 6996798886899999999970---787797143410121
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI 92 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~ 92 (437)
|-|.|.||+|||-||+.|.+.+ +.|.+..|+-.+-+.
T Consensus 5 iW~TGLsGsGKTTlA~~l~~~L~~~~~~~~~LDGD~~R~~ 44 (157)
T pfam01583 5 VWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNVRHG 44 (157)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHCC
T ss_conf 9988989999999999999999975997799768877501
No 267
>smart00350 MCM minichromosome maintenance proteins.
Probab=96.72 E-value=0.00065 Score=44.76 Aligned_cols=112 Identities=17% Similarity=0.227 Sum_probs=64.1
Q ss_pred HHHHHCEECHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf 98620304868999999999987788640864-44466566866996798886899999999970787797143410121
Q gi|254780829|r 14 SELDRYIIGQQDAKRAVAIALRNRWRRQQLPA-DLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92 (437)
Q Consensus 14 ~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~ 92 (437)
+-+.--|-|.+..|+++..++..-..+..-+. ..|.+ .||||+|-|||||+-|.|.+++.+--.. .++|..=|.+
T Consensus 199 ~SiaP~I~G~~~vK~allL~L~GG~~~~~~~g~~~Rg~---ihiLLvGDPGtgKSqlLk~~~~iaprsv-ytsG~gsS~a 274 (509)
T smart00350 199 RSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGD---INILLLGDPGTAKSQLLKYVEKTAPRAV-YTTGKGSSAV 274 (509)
T ss_pred HHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCC---EEEEEECCCCCCHHHHHHHHHHHCCCEE-EEECCCCCCC
T ss_conf 85497323878899999999708876648988504154---1499846998236299999998588606-8734445557
Q ss_pred CCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2234---310134678887652127899856549888868887
Q gi|254780829|r 93 GYVG---RNVEQIIRDLVDVAINIVRESRRDEVREQASINAEE 132 (437)
Q Consensus 93 gyvG---~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~~~ 132 (437)
|--. .|-++. + +-.-.++.=.|-.|+.+++.++...+
T Consensus 275 GLTaav~rd~~~g--e-~~leaGALVlAD~GiccIDEfdKm~~ 314 (509)
T smart00350 275 GLTAAVTRDPETR--E-FTLEGGALVLADNGVCCIDEFDKMDD 314 (509)
T ss_pred CCEEEEEECCCCC--C-EEECCCCEECCCCCEEEEEEHHHCCH
T ss_conf 7068999817888--3-78725641205675478521320787
No 268
>pfam00910 RNA_helicase RNA helicase. This family includes RNA helicases thought to be involved in duplex unwinding during viral RNA replication. Members of this family are found in a variety of single stranded RNA viruses.
Probab=96.72 E-value=0.0013 Score=42.87 Aligned_cols=43 Identities=37% Similarity=0.571 Sum_probs=27.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC----CC----EEE-EECCCEEECCCCCCCH
Q ss_conf 69967988868999999999707----87----797-1434101212234310
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG----AP----FIK-VEVTKFTEIGYVGRNV 99 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~----VP----F~~-~daT~ftE~gyvG~DV 99 (437)
|.+.||||+|||.+|+.||+.+. .| |.. -...+|- -||.|..|
T Consensus 1 i~l~G~~G~GKS~~a~~la~~~~~~~~~~~~~~~Y~~~~~~~~w-dgY~gq~v 52 (105)
T pfam00910 1 IWLYGPPGCGKSTLAKYLARALLDHLGLPKKDSVYSRNPDDDFW-DGYTGQPV 52 (105)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCC-CCCCCCEE
T ss_conf 98979998988999999999999983778789779678877656-78899857
No 269
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.71 E-value=0.0014 Score=42.71 Aligned_cols=29 Identities=34% Similarity=0.769 Sum_probs=25.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 69967988868999999999707877971
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
|-.=||+|||||-+||.||+.++.+|+..
T Consensus 2 IaIdGpagsGKsT~ak~lA~~l~~~~ldt 30 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDT 30 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEECC
T ss_conf 88868997898999999999909907766
No 270
>PRK04182 cytidylate kinase; Provisional
Probab=96.71 E-value=0.002 Score=41.67 Aligned_cols=28 Identities=39% Similarity=0.685 Sum_probs=26.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEE
Q ss_conf 6996798886899999999970787797
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIK 83 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~ 83 (437)
|-+-||+|||||.+|+.||+.++.||+.
T Consensus 3 ItI~g~~GSGk~tIak~LA~~lg~~~~d 30 (178)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKLVS 30 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCEEEC
T ss_conf 9995899888799999999995993872
No 271
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.69 E-value=0.0021 Score=41.43 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=30.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEE
Q ss_conf 6996798886899999999970---78779714341012
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE 91 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE 91 (437)
|.|+|.||+|||-||+.|...| +.|.+..|+-++.+
T Consensus 10 iW~TGLsGSGKTTiA~~l~~~L~~~g~~~~~LDGD~lR~ 48 (176)
T PRK05541 10 IWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 997899999899999999999997599779988689998
No 272
>TIGR02533 type_II_gspE general secretory pathway protein E; InterPro: IPR013369 GspE, the E protein of the type II secretion system, is also referred to as the main terminal branch of the general secretion pathway. ; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=96.66 E-value=0.00084 Score=44.05 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCC--C--CCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 355332788863031011123678887532221002221001357665--6--543321012234320466522112466
Q gi|254780829|r 215 CYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKIVARDSGN--G--IGVSREGVQRDLLPLVEGSSVSTKYGS 290 (437)
Q Consensus 215 a~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~f~~~~~ki~~~~~~~--~--~~~~~~g~~~~~~~~~e~~~v~~~~~~ 290 (437)
-++|.-.....|+.+ .|...=..+---.|.........+|..-... . ......|..+.... ..--+..-|+.
T Consensus 346 LHTNDAAgAvtRL~D--MGvEPFL~aSsl~GVLAQRLVRrlCp~Cke~y~a~~~~~~~~G~~~~~~~--~~nGv~~lyr~ 421 (495)
T TIGR02533 346 LHTNDAAGAVTRLID--MGVEPFLLASSLLGVLAQRLVRRLCPHCKEPYEATDEELALLGISKKEPK--KDNGVIILYRP 421 (495)
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCCCHHHHC--CCCCEEEEECC
T ss_conf 554015446655532--58640489999999998633433151468889989799985488402103--57764899778
Q ss_pred CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEC
Q ss_conf 642024664016754221121255433451268861
Q gi|254780829|r 291 INTDHILFIASGAFHVSRPADLLPEIQGRFPVRVHL 326 (437)
Q Consensus 291 ~~~~~~~~i~~~~~~~~k~~glipE~~GR~p~~v~l 326 (437)
.|-++| .--++.||..+.=-|
T Consensus 422 ~GC~~C---------------~~~GY~GRtGIyElL 442 (495)
T TIGR02533 422 VGCPAC---------------NHTGYRGRTGIYELL 442 (495)
T ss_pred CCCHHH---------------CCCCCCCCEEEEEEE
T ss_conf 764212---------------788883550368867
No 273
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=96.65 E-value=0.0012 Score=43.10 Aligned_cols=48 Identities=25% Similarity=0.420 Sum_probs=31.5
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHHCCC----EEEEECCCEEE-------CCCCCCC
Q ss_conf 56686-6996798886899999999970787----79714341012-------1223431
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTAISRRLARLAGAP----FIKVEVTKFTE-------IGYVGRN 98 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~VP----F~~~daT~ftE-------~gyvG~D 98 (437)
+.+.- +-++||||||||-|.|.+|++.... =+..++...+. +|||-.|
T Consensus 28 i~~GE~~~llGpSG~GKTTlLr~iaGL~~p~~~~G~I~~~g~~v~~~~~~~R~ig~VFQ~ 87 (362)
T TIGR03258 28 IEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQN 87 (362)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCEECCCCCHHHCCEEEECCC
T ss_conf 999989999999974599999999777677788179999999999899888994897179
No 274
>KOG3354 consensus
Probab=96.64 E-value=0.0016 Score=42.17 Aligned_cols=32 Identities=31% Similarity=0.512 Sum_probs=27.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 68669967988868999999999707877971
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
|--|++.|++||||+-++++|+.+++-+|.-.
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dg 43 (191)
T KOG3354 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDG 43 (191)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 60599983588774459999999858862455
No 275
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=96.62 E-value=0.00069 Score=44.59 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 66996798886899999999970
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l 77 (437)
-|+++||+|||||-|.++|-++.
T Consensus 2 r~~f~G~~gCGKTTL~q~L~g~~ 24 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (144)
T ss_pred EEEEEECCCCCHHHHHHHCCCCC
T ss_conf 17887158887443543116873
No 276
>PRK10418 nikD nickel transporter ATP-binding protein; Provisional
Probab=96.61 E-value=0.0013 Score=42.86 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=25.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 669967988868999999999707877971434
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVT 87 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT 87 (437)
-+-++||+|||||.++|++.+.+.......+++
T Consensus 31 ~~aiiG~SGsGKStl~k~llgll~~~~~~~~G~ 63 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGILPAGVRQTAGR 63 (254)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEECCE
T ss_conf 999999998789999999957998898415789
No 277
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=96.60 E-value=0.015 Score=35.87 Aligned_cols=59 Identities=17% Similarity=0.388 Sum_probs=32.4
Q ss_pred CCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE---EECHHHHHHHHHHHH
Q ss_conf 25543345126-88615542467888764346889999999987---519689---984249999999999
Q gi|254780829|r 312 LLPEIQGRFPV-RVHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL---DFTEDSIDALADVAV 375 (437)
Q Consensus 312 lipE~~GR~p~-~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L---~ft~~Al~~IA~~A~ 375 (437)
+.+--.|++-+ -+.++.++.+++.+-. +++.|-..+|. .+|+.+ ..|++-+.+.++.|-
T Consensus 384 ly~p~~G~I~idg~di~~i~~~~lR~~i-----~~V~Q~~~LF~gTI~eNI~~g~~~~sd~ei~~a~~~a~ 449 (585)
T PRK13657 384 VFDPQSGRIRIDGTDIRTVTRASLRRNI-----GVVFQEAGLFNRSIEDNLRVGRPDATDEEMRAAAERAQ 449 (585)
T ss_pred HCCCCCCCEEECCEECHHCCHHHHHHHC-----CEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC
T ss_conf 1578879675898961016899998525-----22166763547659988752799998688999999843
No 278
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.59 E-value=0.002 Score=41.66 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=20.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 86699679888689999999997
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARL 76 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~ 76 (437)
+=++|-|+||||||.|-+.|+..
T Consensus 128 ~~~vl~G~TG~GKT~iL~~L~~~ 150 (311)
T TIGR03167 128 PLIVLGGMTGSGKTELLHALANA 150 (311)
T ss_pred CEEEEECCCCCCHHHHHHHHHHC
T ss_conf 76998788887789999999976
No 279
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transport system, ATP-binding protein component. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=96.59 E-value=0.0013 Score=42.78 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=26.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE
Q ss_conf 6996798886899999999970787--79714341012
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE 91 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE 91 (437)
+-++||||||||-|.|.+|+..... -+..++...+.
T Consensus 33 ~~llGpSG~GKtTlLr~iaGl~~p~~G~I~~~g~~v~~ 70 (353)
T TIGR03265 33 VCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITR 70 (353)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCC
T ss_conf 99999995359999999976999987399999999999
No 280
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.58 E-value=0.0032 Score=40.32 Aligned_cols=37 Identities=32% Similarity=0.448 Sum_probs=28.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCE-EEEECCCEE
Q ss_conf 8669967988868999999999707877-971434101
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPF-IKVEVTKFT 90 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF-~~~daT~ft 90 (437)
+=++++||||+||+-|.+.|.+...-+| +.+..|+=.
T Consensus 3 r~iil~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~TTR~ 40 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRP 40 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf 77999999999999999999863964505778767279
No 281
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.56 E-value=0.0061 Score=38.45 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
+.++||+|||||-|++.+++.+
T Consensus 36 ~aiiG~nGsGKSTLl~~l~Gl~ 57 (280)
T PRK13649 36 TAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999599986999999996699
No 282
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein; InterPro: IPR005666 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). These proteins are involved in the transmembrane transport of sulphate and thiosulphate.; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane.
Probab=96.54 E-value=0.0012 Score=43.04 Aligned_cols=26 Identities=38% Similarity=0.797 Sum_probs=21.9
Q ss_pred CCCC--EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6686--6996798886899999999970
Q gi|254780829|r 52 MPKN--ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psN--iLLiGPtGtGKTlLAktLA~~l 77 (437)
+|+| +=|+||||||||-|-|.+|+.=
T Consensus 23 v~~G~lvaLLGPSGSGKsTLLR~iAGLe 50 (241)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRVIAGLE 50 (241)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 4385279854689873789999983579
No 283
>PRK07667 uridine kinase; Provisional
Probab=96.53 E-value=0.0029 Score=40.54 Aligned_cols=38 Identities=24% Similarity=0.388 Sum_probs=30.1
Q ss_pred CCCCEEEE---CCCCCCHHHHHHHHHHHH---CCCEEEEECCCE
Q ss_conf 66866996---798886899999999970---787797143410
Q gi|254780829|r 52 MPKNILLV---GPTGVGKTAISRRLARLA---GAPFIKVEVTKF 89 (437)
Q Consensus 52 ~psNiLLi---GPtGtGKTlLAktLA~~l---~VPF~~~daT~f 89 (437)
-|.|.++| |+||+|||.+|+.|++.+ ++|+.....-.|
T Consensus 10 ~~~~r~iIgIaG~sgSGKTTla~~L~~~l~~~~~~v~v~~~Dd~ 53 (190)
T PRK07667 10 HKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDH 53 (190)
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 75986999977989788999999999998665983799966624
No 284
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.52 E-value=0.0066 Score=38.26 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=32.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf 6866996798886899999999970---787797143410121
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI 92 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~ 92 (437)
+.=|-|+|.||+|||-||+.|...+ +.|.+..||-.+-+.
T Consensus 24 g~viWlTGLSGSGKTTlA~~L~~~L~~~~~~~~~LDGD~lR~~ 66 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEALHELGVHTYLLDGDNVRHG 66 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHH
T ss_conf 8699987999998899999999999975997599777999874
No 285
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.52 E-value=0.0062 Score=38.42 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=42.1
Q ss_pred HHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCC-------CEEEEE
Q ss_conf 9986203048689999999999877886408644446656686699679888689999999997078-------779714
Q gi|254780829|r 13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGA-------PFIKVE 85 (437)
Q Consensus 13 ~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~V-------PF~~~d 85 (437)
+.+-+..+.|++++-..+--.+ |.-. .+.+..+.=+||.||+|+||+.|++.|-+-+.. |+....
T Consensus 46 y~~F~d~~fG~e~~i~~~V~~~----k~AA----~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ys~t~eG~~Y~~~ 117 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVNYF----KSAA----QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFK 117 (361)
T ss_pred CCCHHHHHCCCHHHHHHHHHHH----HHHH----HCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 5011013116489999999999----9998----4467125699998899887799999999999986267768559998
Q ss_pred C
Q ss_conf 3
Q gi|254780829|r 86 V 86 (437)
Q Consensus 86 a 86 (437)
+
T Consensus 118 w 118 (361)
T smart00763 118 W 118 (361)
T ss_pred E
T ss_conf 3
No 286
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.0025 Score=40.93 Aligned_cols=41 Identities=27% Similarity=0.438 Sum_probs=28.7
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEE
Q ss_conf 65668-66996798886899999999970787--7971434101
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFT 90 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ft 90 (437)
++.|. -++++||+|||||-|++.+++.+--. .+.+++..++
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~ 69 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS 69 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCC
T ss_conf 98789899998899988999999953767688984887781331
No 287
>KOG1969 consensus
Probab=96.50 E-value=0.0035 Score=40.05 Aligned_cols=41 Identities=29% Similarity=0.532 Sum_probs=33.6
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf 66866996798886899999999970787797143410121
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~ 92 (437)
.+|=.||.||||-|||-||.-+|+-+|---+-+.||.=.-+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~ 365 (877)
T KOG1969 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA 365 (877)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 40068753688787247999999862854887325554347
No 288
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.50 E-value=0.0017 Score=42.11 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.+. -+-++||||||||-|.|.+|+...
T Consensus 47 i~~GE~~~ivG~SGsGKSTLLr~i~GL~~ 75 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 88999999998998489999999975999
No 289
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=96.50 E-value=0.0035 Score=40.01 Aligned_cols=90 Identities=22% Similarity=0.325 Sum_probs=62.9
Q ss_pred HHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEE
Q ss_conf 899999862030486899999999998778864086444466566866996798886899999999970---78779714
Q gi|254780829|r 9 PREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVE 85 (437)
Q Consensus 9 P~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~d 85 (437)
+.+=..+...-|||...|-|.|=-.|. +....+ |=|||.|=|||||=++|||+=..+ +-||+++.
T Consensus 203 ~~~~~~~~~~~i~G~Spam~~v~~~~~------~vA~~n------STVLlRGESGTGKEl~A~AIH~~SpR~~~PFVK~N 270 (574)
T TIGR01817 203 AARRRSGKEDGIVGKSPAMRQVVDQIK------VVARSN------STVLLRGESGTGKELIAKAIHELSPRAKRPFVKLN 270 (574)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHH------HHCCCC------CEEEEECCCCCCHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 123312344740124789999998865------201317------66785056574433444234046645578854500
Q ss_pred CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3410121223431013467888765212789985654
Q gi|254780829|r 86 VTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEV 122 (437)
Q Consensus 86 aT~ftE~gyvG~DVes~i~~l~~~a~~~~~~a~~~i~ 122 (437)
|-.+.|.= |-..=-+..|-|..|-+
T Consensus 271 CAALse~l------------LESELFGHEKGAFTGA~ 295 (574)
T TIGR01817 271 CAALSETL------------LESELFGHEKGAFTGAV 295 (574)
T ss_pred CCCCCCCH------------HHHHHHCCCCHHHHHHH
T ss_conf 64477611------------24545134301468887
No 290
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.48 E-value=0.02 Score=35.11 Aligned_cols=41 Identities=24% Similarity=0.356 Sum_probs=27.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHH
Q ss_conf 6996798886899999999970787797143410121223431013
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQ 101 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes 101 (437)
+=++|++|||||.|+++|.+.+.-+- .++| +..|-|.|+-.
T Consensus 45 lgivGeSGsGKSTl~~~i~gll~~~~-~~sG----~I~~~G~~i~~ 85 (330)
T PRK09473 45 LGIVGESGSGKSQTAFALMGLLAANG-RIGG----SATFNGREILN 85 (330)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCC-CEEE----EEEECCEECCC
T ss_conf 99986898779999999976888888-3358----99999998665
No 291
>PRK00023 cmk cytidylate kinase; Provisional
Probab=96.47 E-value=0.0024 Score=41.05 Aligned_cols=29 Identities=31% Similarity=0.625 Sum_probs=25.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 69967988868999999999707877971
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
|-.=||+||||+-+||.||+.+|.+|+..
T Consensus 7 IaIDGpagSGKST~ak~lA~~L~~~yldT 35 (225)
T PRK00023 7 IAIDGPAGSGKGTVAKILAKKLGFHYLDT 35 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECH
T ss_conf 99658986787899999999939887641
No 292
>PRK13764 ATPase; Provisional
Probab=96.47 E-value=0.0024 Score=41.07 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=23.7
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
...|||..||||+|||-+|++||.++
T Consensus 258 ~a~GilIaG~PGaGKsTfaqalA~~~ 283 (605)
T PRK13764 258 RAEGILIAGAPGAGKSTFAQALAEFY 283 (605)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 36649997799997789999999999
No 293
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter; InterPro: IPR005897 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains ABC-type bacteriocin transporter. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Peptide bacteriocins are exported across the cytoplasmic membrane by a dedicated ATP-binding cassette (ABC) transporter. These ABC-transporters have an N-terminal peptidase domain that belong to MEROPS peptidase family C39 (clan CA); a central multi-pass transmembrane region and a C-terminal ABC transporter domain. These transporters have dual function: (i) they remove the N-terminal leader peptide from its bacteriocin precursor by cleavage at a Gly-Gly bond and (ii) transport the mature bacteriocin across the cytoplasmic membrane. This represents a novel strategy for secretion of bacterial proteins . Many bacteria are known to regulate diverse physiological processes through this system, such as bioluminescence, regulation of sporulation, virulence factor expression, antibiotics production, competence for genetic transformation, and activation of biofilm formation .; GO: 0008234 cysteine-type peptidase activity, 0019534 toxin transporter activity, 0006810 transport, 0016020 membrane.
Probab=96.46 E-value=0.01 Score=36.99 Aligned_cols=109 Identities=20% Similarity=0.258 Sum_probs=61.7
Q ss_pred CCCC--EEEECCCCCCHHHHHHHHHHHH--CC----------CEEEEECCCEEE----------CCCCCCCHHHHHHHHH
Q ss_conf 6686--6996798886899999999970--78----------779714341012----------1223431013467888
Q gi|254780829|r 52 MPKN--ILLVGPTGVGKTAISRRLARLA--GA----------PFIKVEVTKFTE----------IGYVGRNVEQIIRDLV 107 (437)
Q Consensus 52 ~psN--iLLiGPtGtGKTlLAktLA~~l--~V----------PF~~~daT~ftE----------~gyvG~DVes~i~~l~ 107 (437)
+|.| +-++||||||||-|||=|=++- +. +.--.|=+++.+ +| -||+..-|+
T Consensus 497 I~~n~k~tiVGmSGSGKsTLaKLLV~FfePQ~~sG~I~Lng~~l~~iD~h~LRq~INYlPQeP~IF-----~GsILeNLL 571 (710)
T TIGR01193 497 IKKNEKITIVGMSGSGKSTLAKLLVGFFEPQAESGEILLNGISLKDIDRHELRQFINYLPQEPYIF-----SGSILENLL 571 (710)
T ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCHHHCCHHHHCCCCCCCCCCCEEE-----CCCHHHHHH
T ss_conf 507854899736797489999875203589988773652782445337344412335568878451-----231788765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 76521278998565498888688875555311432-------1100466898898616888854998
Q gi|254780829|r 108 DVAINIVRESRRDEVREQASINAEERILDALVGKT-------ATSNTREVFRKKLRDGEISDKEIDI 167 (437)
Q Consensus 108 ~~a~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~i~i 167 (437)
--|...+........++ ++++++.+.....|.+ ..-.+++.|+-.+-.-.+++-+|-+
T Consensus 572 lGak~~~~~~~i~~A~~--iAEIk~DIe~mp~Gy~T~LS~~~~~iSGGQKQRialARaLL~~s~vLi 636 (710)
T TIGR01193 572 LGAKENVSQDEILKAVE--IAEIKDDIEKMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLI 636 (710)
T ss_pred HCCCCCCCHHHHHHHHH--HCCCHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 03789989899998840--201124583188876600010374115158999999998618886788
No 294
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.43 E-value=0.0036 Score=39.96 Aligned_cols=28 Identities=29% Similarity=0.687 Sum_probs=23.3
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.|. -+-++||+|||||-|+|.|+++..
T Consensus 25 i~~G~~vaIvG~sGsGKSTLl~ll~gl~~ 53 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 85999999999999809999999966666
No 295
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.42 E-value=0.0026 Score=40.89 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=29.3
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCE--EEEECCCEEEC
Q ss_conf 656686-69967988868999999999707877--97143410121
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAGAPF--IKVEVTKFTEI 92 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF--~~~daT~ftE~ 92 (437)
++.+.- +=++||+|||||-|+|+||+...--+ +..++..++..
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~ 74 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPK 74 (252)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCC
T ss_conf 9648978999848989888999999565678886289888405766
No 296
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit; InterPro: IPR012804 Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in Salmonella typhimurium) , . The corresponding cobalt chelatases are not homologous. Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (IPR010388 from INTERPRO). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis, (IPR011953 from INTERPRO, IPR006537 from INTERPRO, IPR006538 from INTERPRO) . The two pathways differ in the point of cobalt insertion during corrin ring formation . There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction . Cobaltochelatase shows similarities with magnesium chelatase, which is also a complex ATP-dependent enzyme made up of two separable components. However, unlike the situation in cobaltochelatase, one of these two components is membrane bound in magnesium chelatase . .
Probab=96.42 E-value=0.0033 Score=40.17 Aligned_cols=44 Identities=32% Similarity=0.524 Sum_probs=37.9
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 0486899999999998778864086444466566866996798886899999999970
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
|||||+.|++|=.++ ++... .|||.-|.=||||+-.||.|+-.|
T Consensus 6 iVGQe~LK~ALLL~A--------v~P~i------GGVLirG~KGTAKSTaaR~L~~LL 49 (688)
T TIGR02442 6 IVGQEDLKLALLLNA--------VNPRI------GGVLIRGEKGTAKSTAARGLAALL 49 (688)
T ss_pred CCCHHHHHHHHHHEE--------ECCCC------CEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 214279865321002--------52663------707887788862789888487616
No 297
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.42 E-value=0.0023 Score=41.15 Aligned_cols=29 Identities=41% Similarity=0.740 Sum_probs=23.4
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 65668-669967988868999999999707
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.|. -+.++||+|||||-|.|.+++...
T Consensus 23 ~i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~~ 52 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 988999999995899988999999869876
No 298
>PRK06696 uridine kinase; Validated
Probab=96.42 E-value=0.014 Score=36.18 Aligned_cols=34 Identities=32% Similarity=0.569 Sum_probs=27.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCE
Q ss_conf 6996798886899999999970---787797143410
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKF 89 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~f 89 (437)
|=.-||||+|||.||+.||..+ +.|++.+..-.|
T Consensus 29 VgIdG~~gSGKTTlA~~La~~L~~~G~~V~~v~~Ddf 65 (227)
T PRK06696 29 VAIDGITASGKTTFANELAEEIKKRGRPVIRASIDDF 65 (227)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9977899878799999999999746994899715443
No 299
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=96.41 E-value=0.0046 Score=39.28 Aligned_cols=69 Identities=23% Similarity=0.527 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHH--------------------------HHCCCCC-----CC----------------CCCCCC
Q ss_conf 868999999999987788--------------------------6408644-----44----------------665668
Q gi|254780829|r 22 GQQDAKRAVAIALRNRWR--------------------------RQQLPAD-----LR----------------DELMPK 54 (437)
Q Consensus 22 GQ~~AKk~lavav~nhy~--------------------------R~~~~~~-----~~----------------~e~~ps 54 (437)
+|+.|-|++.--.|.=|. |.+.... .+ ..+-||
T Consensus 85 ~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~L~~Le~ENRrL~~~~~~Gst~~~Gli~~~~~m~kic~tIekvA~s 164 (451)
T TIGR02915 85 DRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFRLYTLETENRRLQSALGGGSTALEGLITSSPGMQKICRTIEKVAPS 164 (451)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCC
T ss_conf 83889999643751013578757899999999888888888769987406887410365220685067898886521200
Q ss_pred C--EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEE
Q ss_conf 6--6996798886899999999970---7877971434101
Q gi|254780829|r 55 N--ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFT 90 (437)
Q Consensus 55 N--iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ft 90 (437)
| +||+|=|||||=.+||+|=+.+ +-||+-+.|-..=
T Consensus 165 d~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIP 205 (451)
T TIGR02915 165 DITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIP 205 (451)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCC
T ss_conf 00130104667117899989842057897773444167457
No 300
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=96.40 E-value=0.0074 Score=37.92 Aligned_cols=22 Identities=41% Similarity=0.640 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
+-++||+|||||-|+|.+++.+
T Consensus 36 v~IiG~nGsGKSTL~k~l~Gll 57 (304)
T PRK13651 36 IAIIGQTGSGKTTFIEHLNALL 57 (304)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998799985999999996699
No 301
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.40 E-value=0.0066 Score=38.24 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=30.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEE
Q ss_conf 6996798886899999999970---78779714341012
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTE 91 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE 91 (437)
|-+.|.||+|||.||+.|.+.+ +.|.+..||-.+-+
T Consensus 2 iW~tGLsgsGKTTlA~~l~~~L~~~~~~~~~lDGD~iR~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf 898799999999999999999998699759977488997
No 302
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.0083 Score=37.59 Aligned_cols=27 Identities=33% Similarity=0.624 Sum_probs=24.4
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 566866996798886899999999970
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
-.|...|+.||.|+||+.+|+++|+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~~A~~~A~~l 50 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 942068758999878999999999998
No 303
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.39 E-value=0.0022 Score=41.32 Aligned_cols=23 Identities=43% Similarity=0.758 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||+|||||-|.|.+|+...
T Consensus 31 ~~iiGpSGsGKSTll~~i~Gl~~ 53 (239)
T cd03296 31 VALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999779999999976999
No 304
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.014 Score=36.17 Aligned_cols=18 Identities=61% Similarity=0.868 Sum_probs=9.9
Q ss_pred CCCCC-EEEECCCCCCHHH
Q ss_conf 56686-6996798886899
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTA 68 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTl 68 (437)
+...| +-|+||||+|||-
T Consensus 345 ~~~gGv~AlvGpTGvGKTT 363 (557)
T PRK12727 345 LERGGVIALVGPTGAGKTT 363 (557)
T ss_pred HHCCCEEEEECCCCCCCHH
T ss_conf 5407647874377767311
No 305
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.37 E-value=0.0023 Score=41.22 Aligned_cols=30 Identities=33% Similarity=0.643 Sum_probs=23.5
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 656686-699679888689999999997078
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~V 79 (437)
++.+.- +-++||+|||||-|.|.+|+....
T Consensus 22 ~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~p 52 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEP 52 (213)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9869989999999988099999999769999
No 306
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.37 E-value=0.0023 Score=41.17 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||||||||-|.|.+|+...
T Consensus 53 ~~lvGpSGsGKSTLLr~i~GL~~ 75 (382)
T TIGR03415 53 CVLMGLSGSGKSSLLRAVNGLNP 75 (382)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999997349999999975999
No 307
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=96.36 E-value=0.0047 Score=39.21 Aligned_cols=41 Identities=27% Similarity=0.608 Sum_probs=35.9
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf 66866996798886899999999970---787797143410121
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI 92 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~ 92 (437)
.+++||+.|-|||||-++|+++-..+ +=||+.+.|--+-|.
T Consensus 267 tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 267 TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCHH
T ss_conf 99828995378866899999987448434798078764338888
No 308
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0041 Score=39.61 Aligned_cols=30 Identities=33% Similarity=0.500 Sum_probs=25.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 8669967988868999999999707877971
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
.+|+..|+||||||-+++.|+ +++-+-+..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l 30 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIEL 30 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH-HHCCCEEEH
T ss_conf 937993799986687999999-829846619
No 309
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.34 E-value=0.0025 Score=41.01 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=23.7
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 65668-669967988868999999999707
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.|. -+-++||+|||||.|+|.+++...
T Consensus 27 ~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~ 56 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 986998999999999869999999972898
No 310
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; InterPro: IPR012699 Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds , including phosphites as well as phosphonates. PhnN in Escherichia coli shows considerable homology to guanylate kinases (2.7.4.8 from EC), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP..
Probab=96.34 E-value=0.0035 Score=40.01 Aligned_cols=25 Identities=56% Similarity=0.917 Sum_probs=22.2
Q ss_pred EEEECCCCCCH-HHHHHHHHHHHCCC
Q ss_conf 69967988868-99999999970787
Q gi|254780829|r 56 ILLVGPTGVGK-TAISRRLARLAGAP 80 (437)
Q Consensus 56 iLLiGPtGtGK-TlLAktLA~~l~VP 80 (437)
|+++||||+|| |||+-+=+++.+.|
T Consensus 4 i~vvGPSGaGKDtLl~~AR~~l~~~~ 29 (183)
T TIGR02322 4 IYVVGPSGAGKDTLLDYARARLAGDP 29 (183)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 89970778867789999999704899
No 311
>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=96.33 E-value=0.03 Score=33.98 Aligned_cols=71 Identities=23% Similarity=0.199 Sum_probs=41.3
Q ss_pred CHHHHHHH-HHHCEECHHHHHHHHHHHHHHHHHHHCCCCC-------------CCCCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 88999998-6203048689999999999877886408644-------------446656686699679888689999999
Q gi|254780829|r 8 SPREIVSE-LDRYIIGQQDAKRAVAIALRNRWRRQQLPAD-------------LRDELMPKNILLVGPTGVGKTAISRRL 73 (437)
Q Consensus 8 tP~~i~~~-Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~-------------~~~e~~psNiLLiGPtGtGKTlLAktL 73 (437)
||-+-|+. +..=.+-.|.|-..+.-+.=.=|.++..... .+....|+|+-|.|+.|+|||+|....
T Consensus 2 tP~~~Y~~~v~~g~l~~D~~Q~~a~~~L~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~kGlYl~G~VGrGKTmLMDlF 81 (361)
T pfam03969 2 TPPQRYTAQLQRGAIFPDVAQANAVPALDRLYQRLQAADFVRQSGAGGKLWGRKRSHQPVRGLYLWGGVGRGKTHLMDSF 81 (361)
T ss_pred CHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 87999999986799999989999999999999999715565555234443157887999986898899888699999999
Q ss_pred HHHHC
Q ss_conf 99707
Q gi|254780829|r 74 ARLAG 78 (437)
Q Consensus 74 A~~l~ 78 (437)
-..+.
T Consensus 82 y~~lp 86 (361)
T pfam03969 82 FESLP 86 (361)
T ss_pred HHHCC
T ss_conf 98677
No 312
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.32 E-value=0.004 Score=39.65 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.++||+|+|||-|.|.|++.+.
T Consensus 38 ~~ilGpnGaGKSTLl~~l~Gl~~ 60 (194)
T cd03213 38 TAIMGPSGAGKSTLLNALAGRRT 60 (194)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99998999519999999857777
No 313
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=96.32 E-value=0.0039 Score=39.70 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
|=|.||||+|||-||.||.+.|
T Consensus 22 lWlTGLSGsGKsTiA~Al~~~L 43 (187)
T TIGR00455 22 LWLTGLSGSGKSTIANALEKKL 43 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHHH
T ss_conf 8511688563579999999999
No 314
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.017 Score=35.57 Aligned_cols=13 Identities=77% Similarity=1.265 Sum_probs=6.4
Q ss_pred CEEEECCCCCCHH
Q ss_conf 6699679888689
Q gi|254780829|r 55 NILLVGPTGVGKT 67 (437)
Q Consensus 55 NiLLiGPtGtGKT 67 (437)
-|=|+||||+|||
T Consensus 243 ~IALVGPTGVGKT 255 (436)
T PRK11889 243 TIALIGPTGVGKT 255 (436)
T ss_pred EEEEECCCCCCHH
T ss_conf 7999899998889
No 315
>KOG0060 consensus
Probab=96.31 E-value=0.003 Score=40.42 Aligned_cols=24 Identities=46% Similarity=0.832 Sum_probs=14.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Q ss_conf 686699679888689999999997
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARL 76 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~ 76 (437)
.+|+|..||+|||||=|-|.+|+.
T Consensus 461 g~~LLItG~sG~GKtSLlRvlggL 484 (659)
T KOG0060 461 GQNLLITGPSGCGKTSLLRVLGGL 484 (659)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 975999789987636899998532
No 316
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.31 E-value=0.0025 Score=40.99 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=23.1
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 65668-669967988868999999999707
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.|. =+-++||+|||||-|.|.+|+...
T Consensus 23 ~i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~ 52 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 986998999999998469999999975998
No 317
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0027 Score=40.79 Aligned_cols=29 Identities=28% Similarity=0.574 Sum_probs=23.1
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 656686-69967988868999999999707
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.+.- +-++||+|||||-|.|.+|+...
T Consensus 21 ~v~~Ge~~~iiGpSGsGKSTLlr~i~Gl~~ 50 (235)
T cd03299 21 EVERGDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 988998999999996359999999974999
No 318
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.30 E-value=0.0027 Score=40.75 Aligned_cols=29 Identities=38% Similarity=0.692 Sum_probs=23.0
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 656686-69967988868999999999707
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.+.- +-++||+|||||-|.|.+|+...
T Consensus 26 ~i~~Ge~~~llGpsG~GKTTllr~iaGl~~ 55 (358)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (358)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 988998999999986369999999976999
No 319
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=96.30 E-value=0.0027 Score=40.80 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=22.6
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 56686-69967988868999999999707
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.+.- +-|+||+|||||-|.|.+|++..
T Consensus 40 I~~GE~~~llGpSGsGKSTLlr~iaGl~~ 68 (378)
T PRK09452 40 INNGEFLTLLGPSGCGKTTVLRLIAGFET 68 (378)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99998999998999769999999976999
No 320
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.30 E-value=0.022 Score=34.81 Aligned_cols=69 Identities=32% Similarity=0.405 Sum_probs=45.8
Q ss_pred HHHHHHHHH---CEECHHHHHHHHHHHH-----------HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 999998620---3048689999999999-----------87788640864444665668669967988868999999999
Q gi|254780829|r 10 REIVSELDR---YIIGQQDAKRAVAIAL-----------RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLAR 75 (437)
Q Consensus 10 ~~i~~~Ld~---~VvGQ~~AKk~lavav-----------~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~ 75 (437)
++|.+.|-+ ..|.|++--+.+.-.+ |.-|+|++. ...|==||+-|.|||||.-||--||.
T Consensus 41 ~ei~~~L~~~~~~~i~~~el~~~v~~~l~~~~~~~~a~rY~~~r~~r~------~~~pliILigGtsGvGKSTlA~~LA~ 114 (306)
T PRK04220 41 SEIEEELKKEGITKITKEELRRRVYYKLIEKDYEEIAEKYLLWRRIRK------SKEPIIILIGGASGVGTSTIAFELAS 114 (306)
T ss_pred HHHHHHHHHCCCEEECHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC------CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999986577163599999999999998440999999999999853------69987999858998878999999999
Q ss_pred HHCCCEEEE
Q ss_conf 707877971
Q gi|254780829|r 76 LAGAPFIKV 84 (437)
Q Consensus 76 ~l~VPF~~~ 84 (437)
.||.|=+..
T Consensus 115 rLgI~~vis 123 (306)
T PRK04220 115 RLGIRSVIG 123 (306)
T ss_pred HHCCCEEEC
T ss_conf 709883422
No 321
>pfam01057 Parvo_NS1 Parvovirus non-structural protein NS1. This family also contains the NS2 protein. Parvoviruses encode two non-structural proteins, NS1 and NS2. The mRNA for NS2 contains the coding sequence for the first 87 amino acids of NS1, then by an alternative splicing mechanism mRNA from a different reading frame, encoding the last 78 amino acids, makes up the full length of the NS2 mRNA. NS1, is the major non-structural protein. It is essential for DNA replication. It is an 83-kDa nuclear phosphoprotein. It has DNA helicase and ATPase activity.
Probab=96.30 E-value=0.0041 Score=39.58 Aligned_cols=70 Identities=21% Similarity=0.352 Sum_probs=43.8
Q ss_pred HHHHHHCEECHHHHHHHHHHHHHHHHHHHC------CCC--------------------------------CCCCCCCCC
Q ss_conf 998620304868999999999987788640------864--------------------------------444665668
Q gi|254780829|r 13 VSELDRYIIGQQDAKRAVAIALRNRWRRQQ------LPA--------------------------------DLRDELMPK 54 (437)
Q Consensus 13 ~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~------~~~--------------------------------~~~~e~~ps 54 (437)
|.++..--.|--+++++|..|.+.=..... ... ......-|+
T Consensus 34 y~~~~~~~~g~~~i~~aL~~a~~~~~~~~~~~~~l~~~~~~~~~~i~~N~~~~l~~~~gy~P~~~g~~l~~w~~k~~~kr 113 (271)
T pfam01057 34 YLRLSASPAGRRQIKNALQMAIIRMFSTKTALDYLAKPEVTANFDIEENRIYQLLSLNGYNPAEVGQVLLAWLSKQGGKR 113 (271)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99885265448999999999999986257599985067888656644178999999849998999999999984478887
Q ss_pred C-EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 6-69967988868999999999707877971
Q gi|254780829|r 55 N-ILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 55 N-iLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
| |.+.||+.||||+||.+||..+ |.+.+
T Consensus 114 N~i~~~Gp~~TGks~la~ai~~~~--~~~g~ 142 (271)
T pfam01057 114 NTVWFYGPASTGKTNLAQAIAHAV--PLYGC 142 (271)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHC--CCEEE
T ss_conf 569998898767899999999868--95278
No 322
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0027 Score=40.76 Aligned_cols=49 Identities=22% Similarity=0.505 Sum_probs=30.7
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCE--EEEECCCEEE-------CCCCCCC
Q ss_conf 656686-69967988868999999999707877--9714341012-------1223431
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAGAPF--IKVEVTKFTE-------IGYVGRN 98 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF--~~~daT~ftE-------~gyvG~D 98 (437)
++.+.- +-|+||+|||||-|.|.||+....-- +..++...+. .|||-.+
T Consensus 25 ~i~~Ge~~~llGpsG~GKSTllr~i~Gl~~p~~G~I~i~g~~v~~~~~~~r~ig~vfQ~ 83 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQS 83 (369)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECC
T ss_conf 98799899999999736999999997799999549999999998799778786999407
No 323
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=96.29 E-value=0.0043 Score=39.43 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=31.6
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHH
Q ss_conf 5668-6699679888689999999997078779714341012122343101
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVe 100 (437)
+.|. -+-|+||.|||||-|.|.||+.+..---.+....=...+|+..+..
T Consensus 24 I~~Ge~vgLVG~NGsGKSTLlklL~G~~~~d~G~i~~~~~~~i~~l~qe~~ 74 (638)
T PRK10636 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGSWQLAWVNQETP 74 (638)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCC
T ss_conf 989989999889998899999998089988850899889837997446554
No 324
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.0028 Score=40.66 Aligned_cols=23 Identities=39% Similarity=0.790 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||+|||||-|.|.+|+...
T Consensus 30 ~~ilGpSG~GKSTllr~i~gl~~ 52 (242)
T cd03295 30 LVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999569999999975999
No 325
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.28 E-value=0.0029 Score=40.59 Aligned_cols=23 Identities=35% Similarity=0.739 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++|||||||+-|-|.+|+...
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989997889999999968787
No 326
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0028 Score=40.61 Aligned_cols=23 Identities=39% Similarity=0.746 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||+|||||-|.|.+|+...
T Consensus 29 ~~ivGpSG~GKSTllr~i~Gl~~ 51 (178)
T cd03229 29 VALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999839999999985999
No 327
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.27 E-value=0.005 Score=39.05 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
|++.||||+|||-|.++|-...
T Consensus 5 ivvsgPSGaGK~Tli~~l~~~~ 26 (184)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQRE 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9998998699999999998448
No 328
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=96.27 E-value=0.0023 Score=41.18 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=32.3
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHC--CCEEEEECCCE-------------EECCCCCCCHH
Q ss_conf 656686-69967988868999999999707--87797143410-------------12122343101
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG--APFIKVEVTKF-------------TEIGYVGRNVE 100 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~--VPF~~~daT~f-------------tE~gyvG~DVe 100 (437)
++.+.. +-++||+|||||.|.+.+|+... -=.+..++..+ ...|||-.|-.
T Consensus 20 ~i~~g~i~~l~GpsGaGKTTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~l~~~~r~ig~vfQ~~~ 86 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSLINLISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR 86 (352)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCCCCCCCHHHCCEEEEECCCC
T ss_conf 9889989999999996299999999768999965999999998555410137676688689935763
No 329
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=96.26 E-value=0.0028 Score=40.63 Aligned_cols=29 Identities=34% Similarity=0.564 Sum_probs=23.3
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 5668-6699679888689999999997078
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
+.+. -+-++||+|||||-|.|.+|+....
T Consensus 25 i~~GE~~~llGpSGsGKSTLlr~iaGL~~p 54 (352)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQ 54 (352)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 999989999999984699999999769999
No 330
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.26 E-value=0.0044 Score=39.37 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=21.8
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 5668669967988868999999999
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLAR 75 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~ 75 (437)
++.+=++|-|+||||||.|-+.|+.
T Consensus 135 l~~~~~vl~G~TG~GKT~lL~~L~~ 159 (333)
T PRK11784 135 LEEPLVVLGGMTGSGKTRLLQALAN 159 (333)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf 5468599867888778999999997
No 331
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.24 E-value=0.003 Score=40.45 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||||||||-|.|.+++...
T Consensus 57 ~~ivG~SGsGKSTLlr~i~gL~~ 79 (400)
T PRK10070 57 FVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999998469999999975999
No 332
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=96.24 E-value=0.0044 Score=39.39 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 6996798886899999999970787
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
|...||||||||.+|+.|+..++..
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~~~ 26 (196)
T pfam00485 2 IGVAGSSGAGKTTVARTFVSIFGRE 26 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 8998998571999999999996605
No 333
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.23 E-value=0.0063 Score=38.36 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
-+-++||+|||||-|+|.+++.+.
T Consensus 30 ~vaiiG~nGsGKSTL~~~l~Gll~ 53 (274)
T PRK13644 30 YIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999809999999970685
No 334
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.21 E-value=0.003 Score=40.45 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6699679888689999999997078
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-+-++||+|||||-|.+.+|+.+..
T Consensus 32 ~~~iiG~sGsGKTTll~~i~Gl~~p 56 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999998699999999669999
No 335
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.21 E-value=0.0036 Score=39.92 Aligned_cols=28 Identities=32% Similarity=0.595 Sum_probs=22.7
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 56686-69967988868999999999707
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.|.- +-++||+|||||-|.|.+++.+.
T Consensus 30 i~~Ge~~~i~G~sGsGKSTLlk~i~gl~~ 58 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 85996999999999999999999964668
No 336
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.21 E-value=0.0018 Score=41.97 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=27.6
Q ss_pred HHHHHHCCCCCCCCCCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 77886408644446656686-69967988868999999999707
Q gi|254780829|r 36 NRWRRQQLPADLRDELMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 36 nhy~R~~~~~~~~~e~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++|+-.+.=....-++.|.- +-++||+|||||-|.+.|++.+.
T Consensus 15 ~~~~~~~vL~~vs~~i~~Ge~~~ilGpnGsGKSTLl~~i~G~~~ 58 (226)
T cd03234 15 NWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCCCCEEEEECCEEEEECCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 07998899889778991880999998999609999999967897
No 337
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0034 Score=40.11 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=23.1
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 656686-699679888689999999997078
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~V 79 (437)
++.+.. +-++||+|||||-|.|.+|+....
T Consensus 22 ~v~~Ge~~~iiGpSGsGKSTllr~i~Gl~~p 52 (232)
T cd03300 22 DIKEGEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 8879989999999998399999999779999
No 338
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0036 Score=39.94 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6699679888689999999997078
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
=+-++||+|||||-|.+.+|+....
T Consensus 25 ~~~iiGpSGsGKSTll~~i~GL~~p 49 (214)
T cd03297 25 VTGIFGASGAGKSTLLRCIAGLEKP 49 (214)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999973599999999849999
No 339
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.20 E-value=0.0084 Score=37.57 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=24.3
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 566866996798886899999999970
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
-.|.-+|+.||.|+||+.+|+.+|+.+
T Consensus 21 r~~HA~L~~G~~G~Gk~~la~~~a~~l 47 (324)
T PRK06871 21 RGHHALLFKADSGLGTEQLIRALAQWL 47 (324)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 954378768999978999999999998
No 340
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.17 E-value=0.0036 Score=39.94 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||.|||||-|.|+|++.+.
T Consensus 29 ~~l~G~NGsGKSTLlk~i~Gl~~ 51 (201)
T cd03231 29 LQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999999999999966778
No 341
>PRK10744 phosphate transporter subunit; Provisional
Probab=96.16 E-value=0.0053 Score=38.88 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 699679888689999999997078
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~V 79 (437)
+-++||+|||||-|+|.++++.+.
T Consensus 39 ~~liG~nGaGKSTLlk~i~gl~~l 62 (257)
T PRK10744 39 TAFIGPSGCGKSTLLRTFNKMYEL 62 (257)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999999998199999999876512
No 342
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.14 E-value=0.0054 Score=38.81 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=22.3
Q ss_pred CCCCCCCCCEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEE---EECHHHHHHHHHHH
Q ss_conf 25543345126-88615542467888764346889999999987---519689---98424999999999
Q gi|254780829|r 312 LLPEIQGRFPV-RVHLKSLNKSDFRLILTDTESNLILQYKELMK---TEGIIL---DFTEDSIDALADVA 374 (437)
Q Consensus 312 lipE~~GR~p~-~v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~---~~~v~L---~ft~~Al~~IA~~A 374 (437)
+.+--.|.+-+ -..+..++.+++.+.. ..+.|...+|. .||+.+ ..+++.+.+.++.|
T Consensus 514 l~~p~~G~i~idg~~~~~~~~~~~r~~i-----~~v~Q~~~lf~gTi~eNi~~~~~~~~~~~i~~a~~~a 578 (694)
T TIGR03375 514 LYQPTEGSVLLDGVDIRQIDPADLRRNI-----GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELA 578 (694)
T ss_pred CCCCCCCEEEECCEECCCCCHHHHHHHC-----EEECCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 7589988799898542549999997302-----1357677110746999984169999999999999981
No 343
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=96.14 E-value=0.0044 Score=39.38 Aligned_cols=54 Identities=15% Similarity=0.305 Sum_probs=33.4
Q ss_pred CCCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCEE---EECHHHHHHHHHHH
Q ss_conf 33451268-86155424678887643468899999999875---19689---98424999999999
Q gi|254780829|r 316 IQGRFPVR-VHLKSLNKSDFRLILTDTESNLILQYKELMKT---EGIIL---DFTEDSIDALADVA 374 (437)
Q Consensus 316 ~~GR~p~~-v~l~~L~~~~l~~IL~epk~~l~~q~~~lf~~---~~v~L---~ft~~Al~~IA~~A 374 (437)
-.|++-+= +.+..++.+++.+.. +.+.|-..+|.. ||+.+ ..|++.+.+.++.|
T Consensus 394 ~~G~I~idG~di~~~~~~~lr~~i-----~~V~Q~~~LF~~TI~eNi~~g~~~atdee~~~al~~a 454 (575)
T PRK11160 394 QQGEILLNGQPIASYSEAALRQAI-----SVVSQRVHLFSGTLRDNLLLAAPNATDEALIEVLQQV 454 (575)
T ss_pred CCCEEEECCEECCCCCHHHHHHHH-----CCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 998899998975638889998761-----3567776025886789987258987899999999753
No 344
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.13 E-value=0.0067 Score=38.20 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 699679888689999999997078
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~V 79 (437)
|-..||||+|||.+|+.|+..++-
T Consensus 2 IgI~G~sgsGKTT~a~~L~~~l~~ 25 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGN 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 898899988599999999998099
No 345
>pfam07931 CPT Chloramphenicol phosphotransferase-like protein. The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite.
Probab=96.13 E-value=0.014 Score=36.04 Aligned_cols=37 Identities=35% Similarity=0.628 Sum_probs=34.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf 6996798886899999999970787797143410121
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~ 92 (437)
|+|=|||=+|||-|||+|-..+.-||+...--.|.++
T Consensus 4 I~LNG~SSsGKSsiAraLQ~~l~~p~~h~~vD~f~~~ 40 (174)
T pfam07931 4 ILLNGGSSSGKSSIARALQDILDGPWLHFGVDAFVEA 40 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHH
T ss_conf 9974899888799999999847474676428588876
No 346
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0036 Score=39.97 Aligned_cols=24 Identities=42% Similarity=0.703 Sum_probs=21.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
-+-++||+|||||-|.+.+++...
T Consensus 32 ~~~iiGpsGsGKSTLl~~i~Gl~~ 55 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999579999999975999
No 347
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.10 E-value=0.007 Score=38.08 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
|-..||||+|||.+|+.|+..+.
T Consensus 2 IgIaG~SgSGKTT~a~~L~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 89989897789999999999984
No 348
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.004 Score=39.65 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.+. -+-++||+|||||-|+|.+++.+.
T Consensus 30 i~~GE~vaivG~nGsGKSTL~k~l~Gl~~ 58 (279)
T PRK13635 30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 87998999999999659999999972888
No 349
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.003 Score=40.43 Aligned_cols=28 Identities=32% Similarity=0.586 Sum_probs=22.5
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 65668-66996798886899999999970
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l 77 (437)
++.+. -+-++||||||||-|+|.|++..
T Consensus 34 ~i~~GE~l~ivGeSGsGKSTL~r~i~gl~ 62 (266)
T PRK10419 34 TLKSGETVALLGRSGCGKSTLARLLVGLE 62 (266)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 88899899999999977999999996699
No 350
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.09 E-value=0.023 Score=34.73 Aligned_cols=39 Identities=33% Similarity=0.570 Sum_probs=26.6
Q ss_pred HHHCCCCCCC--CCCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8640864444--66566866996798886899999999970
Q gi|254780829|r 39 RRQQLPADLR--DELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 39 ~R~~~~~~~~--~e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
||...+.-.| .|..|-=|-.+||||||||.|.|.|-+..
T Consensus 23 kk~hvp~vdr~~~epPP~vVavvGPpgvGKtTLiksLvk~y 63 (225)
T cd01882 23 KKLHVPVVDRTPEEPPPLVVAVVGPPGVGKTTLIKSLVKNY 63 (225)
T ss_pred HHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 87626641358789999699998989977889999999998
No 351
>pfam10412 TrwB_AAD_bind Type IV secretion-system coupling protein DNA-binding domain. The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Probab=96.09 E-value=0.013 Score=36.32 Aligned_cols=47 Identities=36% Similarity=0.482 Sum_probs=30.4
Q ss_pred CCCCCCCCEEEECCCCCCHHHHHHH-HHHHH--CCCEEEEECC-CEEECCC
Q ss_conf 4665668669967988868999999-99970--7877971434-1012122
Q gi|254780829|r 48 RDELMPKNILLVGPTGVGKTAISRR-LARLA--GAPFIKVEVT-KFTEIGY 94 (437)
Q Consensus 48 ~~e~~psNiLLiGPtGtGKTlLAkt-LA~~l--~VPF~~~daT-~ftE~gy 94 (437)
....++.|+|++||||+|||-.... +...+ +-+++..|.. +|++.+|
T Consensus 10 p~~~~~~H~lviG~tGsGKT~~i~~~i~~~~~~~~s~iv~DpKGe~~~~~~ 60 (386)
T pfam10412 10 PRRSETQHILIVGTTGTGKTQALRELLDQIRARGDRAIIYDPTGTFVERFY 60 (386)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
T ss_conf 788776758998899998887999999999977991999958736889875
No 352
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.08 E-value=0.0091 Score=37.36 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=27.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEE
Q ss_conf 699679888689999999997078779714341012
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTE 91 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE 91 (437)
+.+.||+|+||+-|.|.|=..- -=.+++++|+=..
T Consensus 7 ~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~p 41 (191)
T COG0194 7 IVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKP 41 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHC-CEEEEEEECCCCC
T ss_conf 9998998888899999998634-9379998526799
No 353
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.07 E-value=0.0042 Score=39.52 Aligned_cols=23 Identities=30% Similarity=0.715 Sum_probs=20.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 66996798886899999999970
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l 77 (437)
=+-++||||||||-|.|.+++..
T Consensus 28 ~~~ivGpSGsGKSTLL~~i~gL~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99999999844999999998199
No 354
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.0041 Score=39.57 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=29.1
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCH
Q ss_conf 65668-669967988868999999999707877971434101212234310
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DV 99 (437)
.+.|. =+.++||+|+|||-|.|.||+.+. |....+++ ..|-|.++
T Consensus 29 ~i~~Gei~~llG~nGsGKSTLl~~l~G~~~-~~~~~~G~----i~~~g~~~ 74 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTE-GNVSVEGD----IHYNGIPY 74 (202)
T ss_pred EECCCEEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEE----EEECCEEC
T ss_conf 980984999998999988999999837878-98751379----99999994
No 355
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.0042 Score=39.55 Aligned_cols=23 Identities=30% Similarity=0.690 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||+|||||-|+|.+++...
T Consensus 29 ~~iiG~SGsGKSTll~~i~gL~~ 51 (235)
T cd03261 29 LAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999729999999975999
No 356
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.0066 Score=38.27 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=25.0
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6566866996798886899999999970
Q gi|254780829|r 50 ELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 50 e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
...|.-+|+.||.|+||+.+|+.+|+.+
T Consensus 16 ~Rl~HAyLf~Gp~G~GK~~~A~~~A~~L 43 (290)
T PRK05917 16 QKVPSAILLHGQDLSNLSQYAYELASLI 43 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9966068768999865999999999998
No 357
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.04 E-value=0.0045 Score=39.34 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||+|||||-|+|.+++.+.
T Consensus 33 vaivG~nGsGKSTL~~~l~Gll~ 55 (276)
T PRK13650 33 LSIIGHNGSGKSTTVRLIDGLLE 55 (276)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999879999999973889
No 358
>PRK13768 GTPase; Provisional
Probab=96.04 E-value=0.0065 Score=38.28 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6866996798886899999999970
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
+..++.+||+|||||-+++++...+
T Consensus 2 ~~~~~ViGpaGSGKsT~~~~l~~~l 26 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLVGALSDWL 26 (253)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7189998999998899999999999
No 359
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.04 E-value=0.0045 Score=39.35 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
+-++||+|||||-|+|.+++.+
T Consensus 37 vaiiG~nGsGKSTL~~~l~Gll 58 (283)
T PRK13640 37 TALIGHNGSGKSTISKLINGLL 58 (283)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999987999999996403
No 360
>pfam00519 PPV_E1_C Papillomavirus helicase. This protein is a DNA helicase that is required for initiation of viral DNA replication. This protein forms a complex with the E2 protein pfam00508.
Probab=96.01 E-value=0.013 Score=36.30 Aligned_cols=30 Identities=27% Similarity=0.562 Sum_probs=25.7
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 56686-6996798886899999999970787
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
+.|+| ++++|||-|||.+.+-.|=++++=-
T Consensus 259 ~PKknCivi~GPPnTGKS~F~mSLi~fL~G~ 289 (432)
T pfam00519 259 IPKKNCLVIYGPPDTGKSMFCMSLIKFLGGK 289 (432)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf 9852469998999966768999999984986
No 361
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=96.01 E-value=0.025 Score=34.52 Aligned_cols=50 Identities=36% Similarity=0.410 Sum_probs=37.5
Q ss_pred CEECHHHHHHHHHH--HHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 30486899999999--9987788640864444665668669967988868999999999707
Q gi|254780829|r 19 YIIGQQDAKRAVAI--ALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 19 ~VvGQ~~AKk~lav--av~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+=||=..|+.+|.- .+++|=+|.+ .-|.|++||||.|||.|++.-++.-.
T Consensus 35 rWIgY~~A~~~L~~Le~Ll~~P~~~R----------mp~lLlvGdsnnGKT~Iv~rF~~~hp 86 (302)
T pfam05621 35 RWIGYPRAVEALNRLEALYAWPNKQR----------MPNLLLVGPTNNGKSMIVEKFRRAHP 86 (302)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCC----------CCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 53277899999999999984686468----------87558870798878999999999679
No 362
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.00 E-value=0.0051 Score=38.98 Aligned_cols=30 Identities=33% Similarity=0.474 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHHH---HCCCEEEEE
Q ss_conf 699679888689999999997---078779714
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARL---AGAPFIKVE 85 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~---l~VPF~~~d 85 (437)
.|+.||||||||.+|-..+-. -+-|=+.+.
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 158768999999999999999987699789999
No 363
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.98 E-value=0.0054 Score=38.83 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=26.4
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCCE
Q ss_conf 5668-6699679888689999999997078--7797143410
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAGA--PFIKVEVTKF 89 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~V--PF~~~daT~f 89 (437)
+.+. -+.++||+|||||-|+|.+++.... --+..++...
T Consensus 32 i~~Ge~vaiiG~sGsGKSTLl~ll~Gl~~p~~G~I~~~g~~i 73 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI 73 (269)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCEEC
T ss_conf 859989999999999799999999649799850999999999
No 364
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.98 E-value=0.0056 Score=38.72 Aligned_cols=29 Identities=24% Similarity=0.607 Sum_probs=23.4
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 65668-669967988868999999999707
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.+. -+-++||+|||||.|.|.+++...
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTll~~i~Gl~~ 52 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 987998999999999809999999963899
No 365
>TIGR02142 modC_ABC molybdate ABC transporter, ATP-binding protein; InterPro: IPR011868 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulphate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulphate transporter rather than by a specific molybdate transporter.; GO: 0005524 ATP binding, 0015098 molybdate ion transmembrane transporter activity, 0015689 molybdate ion transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=95.97 E-value=0.0075 Score=37.87 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=29.7
Q ss_pred CCE-EEECCCCCCHHHHHHHHHHHH--CCCEEEEECCCEEE
Q ss_conf 866-996798886899999999970--78779714341012
Q gi|254780829|r 54 KNI-LLVGPTGVGKTAISRRLARLA--GAPFIKVEVTKFTE 91 (437)
Q Consensus 54 sNi-LLiGPtGtGKTlLAktLA~~l--~VPF~~~daT~ftE 91 (437)
.+| =+-|+||||||-|-+.+||.. +.==+..|++.+-+
T Consensus 23 ~GvtAlFG~SGsGKTtli~~iaGL~rp~~G~i~l~G~~L~d 63 (361)
T TIGR02142 23 QGVTALFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGEVLFD 63 (361)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCEEEEC
T ss_conf 40687125899707899999873167566879988746205
No 366
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.0084 Score=37.55 Aligned_cols=28 Identities=43% Similarity=0.571 Sum_probs=25.4
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6566866996798886899999999970
Q gi|254780829|r 50 ELMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 50 e~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
+-.|.-.|+.||.|+||+.+|+.+|+.+
T Consensus 18 ~rl~HA~L~~Gp~G~Gk~~~A~~~A~~l 45 (325)
T PRK08699 18 ERRPNAWLFVGKKGTGKTAFARFAAKAL 45 (325)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4501179757999978999999999998
No 367
>KOG1970 consensus
Probab=95.95 E-value=0.006 Score=38.50 Aligned_cols=48 Identities=25% Similarity=0.427 Sum_probs=33.3
Q ss_pred CCCCE-EEECCCCCCHHHHHHHHHHHHCCCEEEE-ECCCEEECCCCCCCH
Q ss_conf 66866-9967988868999999999707877971-434101212234310
Q gi|254780829|r 52 MPKNI-LLVGPTGVGKTAISRRLARLAGAPFIKV-EVTKFTEIGYVGRNV 99 (437)
Q Consensus 52 ~psNi-LLiGPtGtGKTlLAktLA~~l~VPF~~~-daT~ftE~gyvG~DV 99 (437)
.+++| ||.||+|||||--.|-||++++.-..-= ..+.|-+..+++.+-
T Consensus 108 l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t 157 (634)
T KOG1970 108 LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNET 157 (634)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 67607998579888713199999986480212304776656655545544
No 368
>pfam03266 DUF265 Protein of unknown function, DUF265.
Probab=95.94 E-value=0.0072 Score=37.99 Aligned_cols=25 Identities=36% Similarity=0.769 Sum_probs=22.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6699679888689999999997078
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
.|++.||||+|||-|.+.++..+.-
T Consensus 1 ki~ITG~pGvGKTTli~kv~~~l~~ 25 (168)
T pfam03266 1 RIFITGPPGVGKTTLVKKVIELLKS 25 (168)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9899789998899999999999986
No 369
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.94 E-value=0.012 Score=36.45 Aligned_cols=39 Identities=33% Similarity=0.589 Sum_probs=33.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHH------HHCCCEEEEECCCEEE
Q ss_conf 68669967988868999999999------7078779714341012
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLAR------LAGAPFIKVEVTKFTE 91 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~------~l~VPF~~~daT~ftE 91 (437)
.+-+||.||||.||.+||+++-. -++-||+-+.|.++.-
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrg 252 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRG 252 (531)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC
T ss_conf 697686468874366899999999988875378627886300047
No 370
>PRK11701 phnK phosphonates transport ATP-binding protein; Provisional
Probab=95.94 E-value=0.0043 Score=39.44 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=23.4
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 656686-69967988868999999999707
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.|.- +-++||+|+|||.|+|.+++.+.
T Consensus 28 ~v~~GEi~~iiG~nGaGKSTLl~~i~G~~~ 57 (258)
T PRK11701 28 DLYPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 887997999988899889999999856788
No 371
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.93 E-value=0.0055 Score=38.76 Aligned_cols=22 Identities=32% Similarity=0.739 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
+.++||||||||-|-+-+|++.
T Consensus 34 vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 34 VVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9997688865788999986275
No 372
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.92 E-value=0.0055 Score=38.76 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||.|||||-|.|.|++.+.
T Consensus 28 v~liGpNGaGKSTLlk~l~Gll~ 50 (246)
T cd03237 28 IGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99997999769999999977878
No 373
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=95.91 E-value=0.0059 Score=38.54 Aligned_cols=75 Identities=21% Similarity=0.333 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHC--CCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC---CCCCCCCCEEEEC-
Q ss_conf 688999999998751--9689984249999999999840400123724679999998677621---2756877689985-
Q gi|254780829|r 342 ESNLILQYKELMKTE--GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF---SASDLQEKTVVID- 415 (437)
Q Consensus 342 k~~l~~q~~~lf~~~--~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~f---e~p~~~~~~v~Id- 415 (437)
+.+|-++|+.++... ++.+.|-++-.+.|.++-..++ | ..|-.-|++..| |.|..+...+.||
T Consensus 74 CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~------g-----HFM~~~ll~SQfa~LE~P~~de~vi~idi 142 (161)
T COG3265 74 CSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARK------G-----HFMPASLLDSQFATLEEPGADEDVLTIDI 142 (161)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCC------C-----CCCCHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 278878899998545997389996388999999987605------6-----77888999989998358999988798648
Q ss_pred ----HHHHHHHHHHHH
Q ss_conf ----999998999998
Q gi|254780829|r 416 ----AEYVRLHIGDFP 427 (437)
Q Consensus 416 ----~~~V~~~l~~l~ 427 (437)
+++|++-+.-+.
T Consensus 143 ~~~~e~vv~~~~~~l~ 158 (161)
T COG3265 143 DQPPEEVVAQALAWLK 158 (161)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9998999999999986
No 374
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.91 E-value=0.0078 Score=37.76 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=23.8
Q ss_pred CCEEEECCCCCCHHHHHHHHH----HHHCCCEEEEE
Q ss_conf 866996798886899999999----97078779714
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLA----RLAGAPFIKVE 85 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA----~~l~VPF~~~d 85 (437)
+.+|+.|+||||||.+|-... +..+-|=+.+.
T Consensus 25 ~~~LV~G~pGsGKTtla~QfL~~Ga~~~GE~~lyit 60 (501)
T PRK09302 25 RPTLVSGTAGTGKTLFALQFLHNGIKSFGEPGVFVT 60 (501)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 779998389999999999999999885599789998
No 375
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.89 E-value=0.0092 Score=37.31 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=28.4
Q ss_pred CCCC-EEEECCCCCCHHHHHHHHHHHHCCCEE-EEEC
Q ss_conf 6686-699679888689999999997078779-7143
Q gi|254780829|r 52 MPKN-ILLVGPTGVGKTAISRRLARLAGAPFI-KVEV 86 (437)
Q Consensus 52 ~psN-iLLiGPtGtGKTlLAktLA~~l~VPF~-~~da 86 (437)
.|-| +|+.||||||||-..-+.-..++-|.. ++..
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~Ti 292 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITI 292 (500)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8970899968999988999999999862788508984
No 376
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=95.88 E-value=0.0068 Score=38.15 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=25.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHH-------CCCE-EEEECCCEEEC
Q ss_conf 6996798886899999999970-------7877-97143410121
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA-------GAPF-IKVEVTKFTEI 92 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l-------~VPF-~~~daT~ftE~ 92 (437)
|++.|++|+|||.|+|.+|-.. +.+| +...+.++.+.
T Consensus 3 i~i~G~aG~GKTtll~kl~~~wa~g~~~~~~~~vf~~~~r~~~~~ 47 (165)
T pfam05729 3 VILQGEAGSGKTTLLQKLALLWAQGKLPQDFDFVFFLPCRELSRS 47 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCC
T ss_conf 999827989899999999999986984369728999995670777
No 377
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.88 E-value=0.0058 Score=38.61 Aligned_cols=29 Identities=38% Similarity=0.589 Sum_probs=23.3
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 656686-69967988868999999999707
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.+.- +-++||+|+|||-|.|.+++.+.
T Consensus 22 ~i~~Gei~~iiG~nGaGKSTLl~~i~Gl~~ 51 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 886998999988999989999999956857
No 378
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.88 E-value=0.0058 Score=38.59 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=22.9
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 65668-66996798886899999999970
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l 77 (437)
++.|. -+.++||.|+|||-|.|.|++.+
T Consensus 33 ~v~~Ge~~~l~GpNGaGKTTLlr~l~Gl~ 61 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 98189899999999987999999997697
No 379
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.88 E-value=0.0052 Score=38.93 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||+|||||-|+|.+++.+.
T Consensus 36 v~iiG~nGsGKSTLl~~l~GLl~ 58 (287)
T PRK13637 36 VALIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999399999999973998
No 380
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.87 E-value=0.0057 Score=38.65 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.++||+|||||-|+|.|++.+.
T Consensus 39 vaivG~nGsGKSTLlk~l~Gll~ 61 (273)
T PRK13632 39 VAILGHNGSGKSTISKILTGLLK 61 (273)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999869999999973877
No 381
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.0045 Score=39.31 Aligned_cols=27 Identities=33% Similarity=0.673 Sum_probs=22.7
Q ss_pred CCCC--EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 6686--69967988868999999999707
Q gi|254780829|r 52 MPKN--ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 52 ~psN--iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++++ +=|+||+|+|||.|-|.+|+...
T Consensus 25 i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~ 53 (345)
T COG1118 25 IKSGELVALLGPSGAGKSTLLRIIAGLET 53 (345)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 06886899977898767889999857577
No 382
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.87 E-value=0.0086 Score=37.50 Aligned_cols=38 Identities=32% Similarity=0.563 Sum_probs=35.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECC
Q ss_conf 69967988868999999999707877971434101212
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~g 93 (437)
|+|=|+|=+|||-|||+|-..+.-||+....-.|.+|-
T Consensus 5 I~LNG~SSSGKSsiAraLQ~~l~~p~~h~~vD~f~~~~ 42 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEAL 42 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHC
T ss_conf 99868998988999999998476756884185898867
No 383
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.86 E-value=0.011 Score=36.70 Aligned_cols=38 Identities=32% Similarity=0.516 Sum_probs=28.8
Q ss_pred HHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 7788640864444665668669967988868999999999707
Q gi|254780829|r 36 NRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 36 nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.|+++.. ..-.|.-.|+.||.|+||+.+|+.+|+.+.
T Consensus 10 ~~w~~l~~-----~~rl~HA~Lf~G~~G~GK~~lA~~~A~~Ll 47 (328)
T PRK05707 10 SLWQQLAG-----RGRHAHAYLLHGPAGIGKRALAERLAAFLL 47 (328)
T ss_pred HHHHHHHH-----CCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999997-----798220464479998679999999999984
No 384
>PRK06547 hypothetical protein; Provisional
Probab=95.86 E-value=0.012 Score=36.52 Aligned_cols=31 Identities=29% Similarity=0.593 Sum_probs=24.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH-HCCCEEEEEC
Q ss_conf 699679888689999999997-0787797143
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARL-AGAPFIKVEV 86 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~-l~VPF~~~da 86 (437)
|+.=||+|+|||-||..||.. .+++-+..|-
T Consensus 18 VaIDG~sGaGKTTLA~~La~~~~~~~vvHmDD 49 (184)
T PRK06547 18 VLIDGRSGSGKTTLAGELAACWEGSQLVHLDD 49 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99868998888999999997457982897057
No 385
>pfam01202 SKI Shikimate kinase.
Probab=95.85 E-value=0.0072 Score=38.00 Aligned_cols=25 Identities=48% Similarity=0.777 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 8886899999999970787797143
Q gi|254780829|r 62 TGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 62 tGtGKTlLAktLA~~l~VPF~~~da 86 (437)
.|||||-++|.||+.++.||+-.|.
T Consensus 1 mGsGKstigk~LA~~L~~~fiD~D~ 25 (158)
T pfam01202 1 MGAGKTTIGRLLAKALGLPFIDTDQ 25 (158)
T ss_pred CCCCHHHHHHHHHHHHCCCEEECHH
T ss_conf 9897799999999996999788729
No 386
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=95.85 E-value=0.019 Score=35.33 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCCCHHHHH
Q ss_conf 6686699679888689999
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAIS 70 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLA 70 (437)
.-+|+|++-|||+||||=|
T Consensus 36 ~G~nvLiiAPTGsGKTeAA 54 (814)
T COG1201 36 SGENVLIIAPTGSGKTEAA 54 (814)
T ss_pred CCCCEEEECCCCCCHHHHH
T ss_conf 8984699868999737999
No 387
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=95.85 E-value=0.0063 Score=38.38 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=22.1
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 56686-6996798886899999999970
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTlLAktLA~~l 77 (437)
+.|.- +.|+||+|||||.|+|.|++..
T Consensus 23 i~~Gei~~LvG~sGsGKSTL~~~l~Gl~ 50 (520)
T TIGR03269 23 IEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999899999999969999999996514
No 388
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.85 E-value=0.0067 Score=38.20 Aligned_cols=29 Identities=38% Similarity=0.705 Sum_probs=23.3
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 656686-69967988868999999999707
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.+.. +-++||+|||||-|.|.+++.+.
T Consensus 23 ~i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~ 52 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 884997999988999989999999964677
No 389
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=95.85 E-value=0.0072 Score=38.00 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 6996798886899999999970787
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
|=+-||||||||.||++|+..++--
T Consensus 37 IgIaG~pGSGKSTlA~~l~~~L~~~ 61 (230)
T PRK09270 37 VGIAGPPGAGKSTLAETLWEALSQQ 61 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9998999889999999999998623
No 390
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.0044 Score=39.37 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=24.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCE
Q ss_conf 6996798886899999999970787--797143410
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKF 89 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~f 89 (437)
+-|+||+|||||-|.|.|+++...- =+..++...
T Consensus 48 ~~llGpsGsGKSTllr~i~Gl~~p~~G~I~i~G~di 83 (377)
T PRK11607 48 FALLGASGCGKSTLLRMLAGFEQPSAGQIMLDGVDL 83 (377)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEEC
T ss_conf 999999984899999999769999865999999998
No 391
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.84 E-value=0.0057 Score=38.65 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||+|||||-|+|.+++.+.
T Consensus 36 ~aiiG~sGsGKSTL~~~l~Gl~~ 58 (277)
T PRK13642 36 VSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999689999999963899
No 392
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.84 E-value=0.0061 Score=38.48 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
+.++||.|+|||-|.|.+++.+
T Consensus 30 ~~l~G~NGaGKSTLlkli~Gl~ 51 (200)
T PRK13540 30 LHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998899987999999997785
No 393
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.83 E-value=0.0097 Score=37.16 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=22.9
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.+. -+.|+||.|||||-|+|.|++...
T Consensus 26 I~~Ge~vgLVG~NGsGKSTLl~iL~G~~~ 54 (632)
T PRK11147 26 IEDNERVCLVGRNGAGKSTLMKILSGEVL 54 (632)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98998999999999879999999838998
No 394
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.83 E-value=0.0057 Score=38.67 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=22.2
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 5668-66996798886899999999970
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l 77 (437)
+.+. -+-++||+|||||-|.|.+++..
T Consensus 35 I~~GEiv~LiG~nGaGKSTLlr~i~Gl~ 62 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8799899999899888999999996589
No 395
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.83 E-value=0.0063 Score=38.38 Aligned_cols=28 Identities=36% Similarity=0.688 Sum_probs=22.6
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 65668-66996798886899999999970
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l 77 (437)
++.|. -+-++||+|||||-|+|.|++..
T Consensus 23 ~i~~Ge~~aliG~sGsGKSTLl~~l~gl~ 51 (248)
T PRK11264 23 EVKPGEVVAIIGPSGSGKTTLLRCINLLE 51 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 98799899999999980999999997589
No 396
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.82 E-value=0.006 Score=38.51 Aligned_cols=29 Identities=41% Similarity=0.631 Sum_probs=23.9
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 656686-69967988868999999999707
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
.+.|.. +.++||.|||||-|.|.+++.+.
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTLlk~i~Gl~~ 53 (206)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLLAGLLP 53 (206)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 986994999989999989999999958878
No 397
>pfam04851 ResIII Type III restriction enzyme, res subunit.
Probab=95.82 E-value=0.017 Score=35.60 Aligned_cols=24 Identities=38% Similarity=0.376 Sum_probs=20.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 866996798886899999999970
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l 77 (437)
++.++.-|||+|||.++=.++..+
T Consensus 19 ~~~~i~~pTGsGKT~~~~~~i~~~ 42 (103)
T pfam04851 19 KRGLIVMATGSGKTLTAAKLIARL 42 (103)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 986999589998799999999999
No 398
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.82 E-value=0.0062 Score=38.42 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=22.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6699679888689999999997078
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-+-++||+|||||-|.|.+++.+..
T Consensus 27 ~v~iiG~nGaGKSTLl~~i~Gll~p 51 (233)
T PRK10771 27 QVAILGPSGAGKSTLLNLIAGFLTP 51 (233)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 9999999998199999999659999
No 399
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.82 E-value=0.0062 Score=38.43 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=22.9
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 65668-66996798886899999999970
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l 77 (437)
++.+. =+-++||+|||||-|+|.+++.+
T Consensus 33 ~i~~GE~v~iiG~nGsGKSTL~r~l~gl~ 61 (281)
T PRK13633 33 EVKKGEFLVILGHNGSGKSTIAKHMNALL 61 (281)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 88799899999999984999999997588
No 400
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=95.82 E-value=0.014 Score=36.16 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=36.1
Q ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHH---HHCCCEEEEECC-CEEECCCC-CCCH
Q ss_conf 665668669967988868999999999---707877971434-10121223-4310
Q gi|254780829|r 49 DELMPKNILLVGPTGVGKTAISRRLAR---LAGAPFIKVEVT-KFTEIGYV-GRNV 99 (437)
Q Consensus 49 ~e~~psNiLLiGPtGtGKTlLAktLA~---~l~VPF~~~daT-~ftE~gyv-G~DV 99 (437)
...+-.|+|++|+||+|||-....+-. .-+-+.++.|.. +|++.+|- +.|+
T Consensus 38 ~~~e~~H~lv~G~tGsGKT~~i~~li~~~~~rg~~~II~DpkGe~~~~fy~~~~d~ 93 (410)
T cd01127 38 KDAEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSKFYRPATDI 93 (410)
T ss_pred CCHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCE
T ss_conf 65202747998899998899999999999986990999958854999975447766
No 401
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.81 E-value=0.005 Score=39.03 Aligned_cols=39 Identities=23% Similarity=0.224 Sum_probs=28.9
Q ss_pred CCCCCCCC-EEEECCCCCCHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 46656686-6996798886899999999970787797143
Q gi|254780829|r 48 RDELMPKN-ILLVGPTGVGKTAISRRLARLAGAPFIKVEV 86 (437)
Q Consensus 48 ~~e~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF~~~da 86 (437)
.-++.|.- +=++|-|||||+.+|++|=+.+.-+..+++|
T Consensus 29 sf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G 68 (539)
T COG1123 29 SFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSG 68 (539)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCE
T ss_conf 4786489589998689888899999985548887864441
No 402
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.81 E-value=0.0063 Score=38.38 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 656686-69967988868999999999707
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.|.. +.++||+|||||-|.+.+++...
T Consensus 20 ~i~~Ge~~~i~GpSGsGKSTLL~~i~gl~~ 49 (206)
T TIGR03608 20 TIEKGKMVAIVGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 986998999987999709999999975999
No 403
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.81 E-value=0.0052 Score=38.94 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
-+-++||+|||||.|+|.+++...
T Consensus 33 i~~iiG~sGsGKSTLl~~i~gl~~ 56 (257)
T PRK10619 33 VISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999998999819999999965999
No 404
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.0062 Score=38.43 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 5668-66996798886899999999970
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l 77 (437)
+.+. -+-++||+|||||-|.|.+++..
T Consensus 32 i~~GE~v~iiG~sGsGKSTLl~~i~Gl~ 59 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 8899899999999940999999996699
No 405
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.81 E-value=0.0062 Score=38.41 Aligned_cols=29 Identities=34% Similarity=0.652 Sum_probs=23.3
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 65668-669967988868999999999707
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.+. -+-++||+|||||-|.|.+++...
T Consensus 23 ~i~~Ge~~~iiGpsGsGKSTLl~~i~gl~~ 52 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999998999999998339999999974999
No 406
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.80 E-value=0.0058 Score=38.59 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=22.7
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.+. -+-++||+|||||-|+|.+++.+.
T Consensus 31 i~~Gei~~iiGpnGsGKSTLlk~i~Gl~~ 59 (269)
T PRK11831 31 VPRGKITAIMGPSGIGKTTLLRLIGGQIA 59 (269)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 87998999993999759999999967988
No 407
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.79 E-value=0.017 Score=35.63 Aligned_cols=32 Identities=41% Similarity=0.651 Sum_probs=23.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHH---CCCEEEEEC
Q ss_conf 66996798886899999999970---787797143
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLA---GAPFIKVEV 86 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l---~VPF~~~da 86 (437)
.+|+.||||+|||-|+.-+|..+ +..-+++++
T Consensus 1 ~~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDI 35 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 98999899998999999999998763997999986
No 408
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=95.79 E-value=0.0073 Score=37.96 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=23.0
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 66866996798886899999999970
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
.+|||++.|-||||||-+.|+|=++.
T Consensus 157 ~~knIii~GGTgSGKTTf~kal~~~I 182 (328)
T TIGR02788 157 SRKNIIISGGTGSGKTTFLKALVKEI 182 (328)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCC
T ss_conf 38919999068971899999997327
No 409
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.011 Score=36.70 Aligned_cols=38 Identities=34% Similarity=0.522 Sum_probs=29.7
Q ss_pred HHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 788640864444665668669967988868999999999707
Q gi|254780829|r 37 RWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 37 hy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+|.|.+.. .+-.|.-.|+.||.|+||..+|+++|+.+-
T Consensus 9 ~w~~l~~~----~~rl~HA~Lf~Gp~G~Gk~~lA~~~A~~ll 46 (342)
T PRK06964 9 DWNRLQAL----RARWPHALLLHGQAGIGKLAFAQHLAQGLL 46 (342)
T ss_pred HHHHHHHC----CCCHHEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99999980----687130576579998679999999999983
No 410
>PRK05480 uridine kinase; Provisional
Probab=95.77 E-value=0.0099 Score=37.10 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 699679888689999999997078
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~V 79 (437)
|...||||+|||.+|+.|+..++-
T Consensus 9 IgIaG~SgSGKTT~a~~L~~~l~~ 32 (209)
T PRK05480 9 IGIAGGSGSGKTTVASTIYEELGD 32 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999899977899999999998086
No 411
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.77 E-value=0.0063 Score=38.36 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||+|||||-|.|.+|+...
T Consensus 27 ~~ilGpSGsGKSTLl~li~Gl~~ 49 (211)
T cd03298 27 TAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999559999999976999
No 412
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.77 E-value=0.0073 Score=37.95 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
-+-++||+|||||-|+|.+++.+.
T Consensus 35 ~~aiiG~nGsGKSTLl~~l~GLl~ 58 (286)
T PRK13646 35 YYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999819999999970788
No 413
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.76 E-value=0.0054 Score=38.83 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=22.6
Q ss_pred CCCCC--EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 56686--69967988868999999999707
Q gi|254780829|r 51 LMPKN--ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~psN--iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.++| +=++||.|||||-|.|.|++.+.
T Consensus 22 ipk~GEi~gLiGpNGaGKSTLlk~i~Gll~ 51 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 898980999989999709999999967986
No 414
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.75 E-value=0.0092 Score=37.30 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=23.3
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.|. -+-++||+|||||-|++.|.+++.
T Consensus 27 I~~Ge~vaIvG~sGsGKSTLl~lL~gl~~ 55 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 87999999999999979999999960357
No 415
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=95.75 E-value=0.0068 Score=38.17 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=22.6
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 5668-66996798886899999999970
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l 77 (437)
+.+. -+.++||+|||||-|+|.|++.+
T Consensus 28 i~~Ge~~~lvG~nGsGKSTL~~~l~Gl~ 55 (513)
T PRK13549 28 VRAGEIVSLCGENGAGKSTLMKVLSGVY 55 (513)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 8899799998999972999999995678
No 416
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.74 E-value=0.01 Score=36.97 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=24.0
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 5668-6699679888689999999997078
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
+.|. -+-++||+|||||-|+|.|+++...
T Consensus 31 i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p 60 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFLEA 60 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 869999999999998799999999987288
No 417
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.74 E-value=0.0086 Score=37.49 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=20.8
Q ss_pred CCCC-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6686-6996798886899999999970
Q gi|254780829|r 52 MPKN-ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 52 ~psN-iLLiGPtGtGKTlLAktLA~~l 77 (437)
.|+| +=++||+|||||-|.+.++..+
T Consensus 20 ip~GitaIvGpsGsGKSTLl~~i~~~l 46 (197)
T cd03278 20 FPPGLTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 389828999999998899999999874
No 418
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.73 E-value=0.0084 Score=37.56 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=22.9
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.|. -+-++||+|||||-|.|.+++++.
T Consensus 25 i~~Ge~~aivG~sGsGKSTLl~~l~G~~~ 53 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHHCCC
T ss_conf 86999999999998759999999986176
No 419
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.0068 Score=38.14 Aligned_cols=45 Identities=33% Similarity=0.535 Sum_probs=31.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE---------CCCCCCCHH
Q ss_conf 6996798886899999999970787--79714341012---------122343101
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE---------IGYVGRNVE 100 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE---------~gyvG~DVe 100 (437)
+-++||+|||||-|+|.|.+++... -+.+|+....+ ++||..+..
T Consensus 30 v~ivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~di~~~~~~~~r~~i~~v~Q~~~ 85 (236)
T cd03253 30 VAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTV 85 (236)
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHCEEEEECCCE
T ss_conf 99999999989999999743854887489999999231899999723789950780
No 420
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.72 E-value=0.011 Score=36.73 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 6996798886899999999970787
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
||..||||+|||-...++..+.+-+
T Consensus 4 iLitG~TGSGKTTtl~all~~i~~~ 28 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 9998999997999999999853637
No 421
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.72 E-value=0.0048 Score=39.17 Aligned_cols=43 Identities=28% Similarity=0.536 Sum_probs=27.8
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHH
Q ss_conf 65668-6699679888689999999997078779714341012122343101
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVe 100 (437)
++.+. -+=++|+||||||.|+|+|++... | .+ =+..|-|.|+-
T Consensus 37 ~i~~GE~lgiVGeSGsGKSTL~~~l~gl~~-p---~~----G~I~~~G~dl~ 80 (327)
T PRK11308 37 NLERGKTLAVVGESGCGKSTLARLLTMIET-P---TG----GELYYQGQDLL 80 (327)
T ss_pred EECCCCEEEEECCCCHHHHHHHHHHHCCCC-C---CC----CEEEECCEECC
T ss_conf 988999999999983199999999956999-8---86----37998999557
No 422
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.72 E-value=0.0061 Score=38.45 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||+|||||-|++.+++++.
T Consensus 34 ~~IvG~sGsGKSTLl~~i~G~~~ 56 (204)
T cd03250 34 VAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred EEEECCCCCCHHHHHHHHCCCCC
T ss_conf 99999999858999999818952
No 423
>pfam02562 PhoH PhoH-like protein. PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Probab=95.72 E-value=0.0086 Score=37.51 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=19.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 866996798886899999999970
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l 77 (437)
.-+...||+|||||+||=+.|=.+
T Consensus 20 ~iv~~~GpAGtGKT~la~~~al~~ 43 (205)
T pfam02562 20 DIVFGIGPAGTGKTYLAVAAAVDA 43 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 807998999860999999999999
No 424
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=95.71 E-value=0.0094 Score=37.24 Aligned_cols=43 Identities=26% Similarity=0.424 Sum_probs=27.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCC
Q ss_conf 6699679888689999999997078779714341012122343
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGR 97 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~ 97 (437)
-|-++||.|||||-|+|.|++.+..--=.+....=...||+-.
T Consensus 347 ~ialvG~NGsGKSTLlk~l~G~l~p~~G~i~~g~~~~i~y~~Q 389 (632)
T PRK11147 347 KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQ 389 (632)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCEEEEEHH
T ss_conf 7999889884277999986066689987799899870775515
No 425
>PRK10908 cell division protein FtsE; Provisional
Probab=95.70 E-value=0.0067 Score=38.19 Aligned_cols=45 Identities=18% Similarity=0.471 Sum_probs=29.6
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHH
Q ss_conf 65668-669967988868999999999707877971434101212234310134
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~ 102 (437)
++.+. -+-++||+|||||-|.|.+++....- + =+..|-|.|+...
T Consensus 24 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~----~----G~i~~~g~~i~~~ 69 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPS----A----GKIWFSGHDITRL 69 (222)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCCC----C----EEEEECCEECCCC
T ss_conf 99699899999999807999999996599998----6----2999999998756
No 426
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.0067 Score=38.19 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=23.5
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.+. -+-++||+|||||-|+|.+++.+.
T Consensus 17 i~~Ge~vaiiG~sGsGKSTLl~~l~GLl~ 45 (276)
T PRK13634 17 IPSGSYVAIIGHTGSGKSTLLQHLNGLLK 45 (276)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 98998999999999699999999974999
No 427
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.011 Score=36.84 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=23.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 668669967988868999999999707
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
.+..|...||||+|||.+++.+|..|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 545999867998458999999999998
No 428
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.69 E-value=0.008 Score=37.70 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6699679888689999999997078
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-+-++||+|||||-|.++|++.+..
T Consensus 29 ~~~IvG~sGsGKSTLl~~l~g~~~~ 53 (218)
T cd03290 29 LTMIVGQVGCGKSSLLLAILGEMQT 53 (218)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999998099999998555656
No 429
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.68 E-value=0.02 Score=35.13 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=25.6
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 65668669967988868999999999707
Q gi|254780829|r 50 ELMPKNILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~psNiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
...|.-+|+.||.|+||+.+|+.+|+.+-
T Consensus 22 ~rl~HA~L~~g~~G~Gk~~la~~la~~Ll 50 (319)
T PRK06090 22 ERIPGALLLQSDEGLGVESLVELFSHALL 50 (319)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99630676679998579999999999980
No 430
>PRK04328 hypothetical protein; Provisional
Probab=95.67 E-value=0.0094 Score=37.25 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=22.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHH---CCCEEEE
Q ss_conf 866996798886899999999970---7877971
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLARLA---GAPFIKV 84 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~ 84 (437)
+-+|+.||||||||.||-..+-.- |-|=+++
T Consensus 25 s~~Lv~G~pGtGKT~la~qFl~~g~~~GE~~lyi 58 (250)
T PRK04328 25 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYV 58 (250)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 6999982899998999999999998769977999
No 431
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=95.66 E-value=0.0079 Score=37.75 Aligned_cols=25 Identities=12% Similarity=0.313 Sum_probs=13.4
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 615542467888764346889999999987
Q gi|254780829|r 325 HLKSLNKSDFRLILTDTESNLILQYKELMK 354 (437)
Q Consensus 325 ~l~~L~~~~l~~IL~epk~~l~~q~~~lf~ 354 (437)
.++.++.+++++-. +++.|-..||.
T Consensus 386 di~~~~~~~lR~~i-----~~V~Qd~~LF~ 410 (547)
T PRK10522 386 PVTAEQPEDYRKLF-----SAVFTDVHLFD 410 (547)
T ss_pred ECCCCCHHHHHHHC-----EEECCCCCHHH
T ss_conf 99968999998541-----69857740457
No 432
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.0081 Score=37.66 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=22.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
-+.++||+|||||-|++.+++++.
T Consensus 30 ~i~ivG~sGsGKSTLl~ll~gl~~ 53 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999839999999976775
No 433
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.62 E-value=0.0078 Score=37.77 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=23.3
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 65668-669967988868999999999707
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.|. -+-++||+|+|||-|.|++++.+.
T Consensus 23 ~i~~Ge~~aliG~nGaGKSTLl~~i~G~l~ 52 (273)
T PRK13547 23 RIEPGRVTALLGRNGAGKSTLLKVLAGELT 52 (273)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 998998999999999769999999956788
No 434
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.62 E-value=0.055 Score=32.27 Aligned_cols=44 Identities=27% Similarity=0.348 Sum_probs=32.7
Q ss_pred HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 87788640864444665668669967988868999999999707877971
Q gi|254780829|r 35 RNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 35 ~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
|--|||++.. ..|=-||+=|.|||||..||--||.-||.+=++.
T Consensus 250 Y~lwR~ir~~------~~PiiILIGGaSGvGKSTlAseLA~RLGI~~VIs 293 (492)
T PRK12337 250 YRLLRVLRKP------PRPLHVLLGGVSGTGKSVLAAELAYRLGITRVVP 293 (492)
T ss_pred HHHHHHHHCC------CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf 9999997356------8876999607888668889999999609881025
No 435
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.62 E-value=0.0079 Score=37.73 Aligned_cols=44 Identities=27% Similarity=0.500 Sum_probs=27.9
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHHCCCEEEE-ECCCEEECCCCCCCHHH
Q ss_conf 56686-69967988868999999999707877971-43410121223431013
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTAISRRLARLAGAPFIKV-EVTKFTEIGYVGRNVEQ 101 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF~~~-daT~ftE~gyvG~DVes 101 (437)
+.+.- +-++||+|+|||-|+|.|++. |.... +| +..|-|.|+..
T Consensus 29 i~~Gei~aiiG~nGsGKSTL~~~i~G~---~~~~~~~G----~I~~~G~~i~~ 74 (252)
T CHL00131 29 INAGEIHAIMGPNGSGKSTLSKVIAGH---PAYTVLEG----DILFKGESILE 74 (252)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCCC---CCCCCCCC----EEEECCEECCC
T ss_conf 879989999999999999999997278---76676642----59987727685
No 436
>KOG1051 consensus
Probab=95.62 E-value=0.019 Score=35.23 Aligned_cols=62 Identities=37% Similarity=0.565 Sum_probs=49.3
Q ss_pred CCCCCHHHHHHHHHHCEEC--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---C
Q ss_conf 6768889999986203048--6899999999998778864086444466566866996798886899999999970---7
Q gi|254780829|r 4 TFNFSPREIVSELDRYIIG--QQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---G 78 (437)
Q Consensus 4 ~~~ltP~~i~~~Ld~~VvG--Q~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~ 78 (437)
..+|+|+.-.-.||-+ +| +++.++++-|-.+ | .|+|-+|||.+|+|||-++.-+|+-. +
T Consensus 173 ~~dl~p~~~~gk~dPv-igr~deeirRvi~iL~R----r-----------~k~NPvLVG~~gvgktaiv~gla~ri~~G~ 236 (898)
T KOG1051 173 GTDLTPRARQGKLDPV-IGRHDEEIRRVIEILSR----K-----------TKNNPVLVGEPGVGKTAIVEGLAQRIATGD 236 (898)
T ss_pred CCCCCHHHHCCCCCCC-CCCCHHHHHHHHHHHHC----C-----------CCCCCEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 6456724433687886-58852889999999814----6-----------789966983687772168999998766178
Q ss_pred CCE
Q ss_conf 877
Q gi|254780829|r 79 APF 81 (437)
Q Consensus 79 VPF 81 (437)
||-
T Consensus 237 vp~ 239 (898)
T KOG1051 237 VPE 239 (898)
T ss_pred CCC
T ss_conf 885
No 437
>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.62 E-value=0.032 Score=33.80 Aligned_cols=64 Identities=23% Similarity=0.368 Sum_probs=40.7
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCEEE
Q ss_conf 0486899999999998778864086444466566866996798886899999999970-78779714341012
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA-GAPFIKVEVTKFTE 91 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l-~VPF~~~daT~ftE 91 (437)
+.|.+++...+--.+ |. +..+.+..+.=+||+||+|+||+-||+.|-+-+ ..|+...+++..-|
T Consensus 60 ffGme~~i~~iV~~~----ks----AA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~y~~Y~i~gsPm~e 124 (358)
T pfam08298 60 FFGMEETIERIVNYF----RH----AAQGLEERKQILYLLGPVGGGKSSLAERLKKLLELVPIYALKGSPVFE 124 (358)
T ss_pred CCCHHHHHHHHHHHH----HH----HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 001599999999999----99----972367210589997789877589999999872058648844897778
No 438
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.62 E-value=0.0079 Score=37.75 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=23.1
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 656686-69967988868999999999707
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
.+.|.- +-++||+|||||-|.|.+++...
T Consensus 32 ~i~~GE~v~ivG~sGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 32 VVKRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999998999999998589999999966999
No 439
>PRK13695 putative NTPase; Provisional
Probab=95.61 E-value=0.013 Score=36.33 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=23.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 686699679888689999999997078
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
+-.|++.||||+|||-|.+.+...+.-
T Consensus 3 ~~kI~iTG~PGvGKTTli~Kv~~~L~~ 29 (174)
T PRK13695 3 ALRIGITGMPGVGKTTLVLKIAELLAR 29 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 429998789998899999999999863
No 440
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.59 E-value=0.0093 Score=37.27 Aligned_cols=29 Identities=34% Similarity=0.532 Sum_probs=23.8
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 5668-6699679888689999999997078
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
+.|. -+-++||+|||||-|+|.|++....
T Consensus 27 i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~p 56 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLVEL 56 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 869989999999999899999999679718
No 441
>PTZ00301 uridine kinase; Provisional
Probab=95.57 E-value=0.01 Score=36.95 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
|-..||||||||.+|+.++.++.
T Consensus 6 IgIaGgSgSGKTT~a~~i~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99968876789999999999987
No 442
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.57 E-value=0.0092 Score=37.32 Aligned_cols=29 Identities=41% Similarity=0.563 Sum_probs=23.5
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 65668-669967988868999999999707
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.|. -+-++||.|+|||-|.|.+++.+.
T Consensus 23 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 52 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 987998999999999859999999976888
No 443
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.0098 Score=37.14 Aligned_cols=24 Identities=42% Similarity=0.686 Sum_probs=21.9
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
-+.++||+|+|||-|.|.+++...
T Consensus 27 ~~~i~G~nGaGKSTLl~~l~gl~~ 50 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999987889998999999958847
No 444
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.56 E-value=0.0092 Score=37.31 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 66996798886899999999970787
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
-+-++||||||||-|++.|++++...
T Consensus 65 ~vaIVG~sGSGKSTLl~lL~gl~~p~ 90 (282)
T cd03291 65 MLAITGSTGSGKTSLLMLILGELEPS 90 (282)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 99999999981999999995787278
No 445
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.55 E-value=0.0091 Score=37.34 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.|. -+-++||+|||||-|++.+.++..
T Consensus 27 i~~G~~v~ivG~sGsGKSTLl~ll~gl~~ 55 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 87999999999999859999999967254
No 446
>KOG0478 consensus
Probab=95.54 E-value=0.031 Score=33.85 Aligned_cols=98 Identities=21% Similarity=0.184 Sum_probs=52.0
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-------CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEC
Q ss_conf 0486899999999998778864086444466566-------866996798886899999999970787797143410121
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-------KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEI 92 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~p-------sNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~ 92 (437)
|-|-|+-||.+=-.+ -++.+.+..+ .||||+|-|||||+-|.+.+++.+-= =++.+|--=+++
T Consensus 431 Iye~edvKkglLLqL---------fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pR-g~yTSGkGsSav 500 (804)
T KOG0478 431 IYELEDVKKGLLLQL---------FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPR-GVYTSGKGSSAV 500 (804)
T ss_pred HHCCCCHHHHHHHHH---------HCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCC-CEEECCCCCCHH
T ss_conf 534422666677887---------5687632233444245522899469986789999999974775-404058763022
Q ss_pred ---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---22343101346788876521278998565498888688
Q gi|254780829|r 93 ---GYVGRNVEQIIRDLVDVAINIVRESRRDEVREQASINA 130 (437)
Q Consensus 93 ---gyvG~DVes~i~~l~~~a~~~~~~a~~~i~~~~~~~~~ 130 (437)
-||-.|.+.- .++..+ ++.--+--|+.|++.+++.
T Consensus 501 GLTayVtrd~dtk--qlVLes-GALVLSD~GiCCIDEFDKM 538 (804)
T KOG0478 501 GLTAYVTKDPDTR--QLVLES-GALVLSDNGICCIDEFDKM 538 (804)
T ss_pred CCEEEEEECCCCC--EEEEEC-CCEEECCCCEEECHHHHHH
T ss_conf 0035677657655--466504-8489728965771123333
No 447
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=95.54 E-value=0.0087 Score=37.46 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=22.9
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 65668-66996798886899999999970
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l 77 (437)
++.|. =+.++||+|+|||-|+|.|++.+
T Consensus 26 ~i~~Gei~~liG~nGaGKSTL~~~l~G~~ 54 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTLMKVLTGIY 54 (501)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 99899699998999982999999995799
No 448
>PRK13544 consensus
Probab=95.53 E-value=0.0091 Score=37.35 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=23.1
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 56686-69967988868999999999707
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.|.- +-|+||.|+|||-|.|.+|+...
T Consensus 24 i~~Gei~~l~G~NGsGKSTLl~~i~Gl~~ 52 (208)
T PRK13544 24 AKQNSLTLVIGNNGSGKTSLLRLLAGLIP 52 (208)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 82994999999999989999999958806
No 449
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.53 E-value=0.011 Score=36.74 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=25.7
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCC
Q ss_conf 6699679888689999999997078--779714341
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGA--PFIKVEVTK 88 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~V--PF~~~daT~ 88 (437)
-+-++||+|||||-|++.|.++... =-+.+|+..
T Consensus 49 ~vaIvG~sGsGKSTL~~ll~gl~~p~~G~I~idg~d 84 (257)
T cd03288 49 KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGID 84 (257)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEE
T ss_conf 999999999819999999960566788889999899
No 450
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.52 E-value=0.0087 Score=37.47 Aligned_cols=28 Identities=36% Similarity=0.616 Sum_probs=22.5
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 656686-6996798886899999999970
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l 77 (437)
++.|.. +-++||+|+|||-|+|++++.-
T Consensus 23 ~i~~Gei~~iiG~nGaGKSTLl~~i~G~~ 51 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 98499799999999999999999983775
No 451
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.52 E-value=0.0095 Score=37.21 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
=+-++||+|||||-|+|.+++.+.
T Consensus 30 ~vaiiG~nGsGKSTLl~~l~Gll~ 53 (275)
T PRK13639 30 MIAILGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999649999999973989
No 452
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=95.52 E-value=0.013 Score=36.35 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=22.4
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 5668-66996798886899999999970
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l 77 (437)
+.|. -+.|+||.|||||-|+|.||+..
T Consensus 30 i~~Ge~vgLvG~NGaGKSTLlriLaG~~ 57 (556)
T PRK11819 30 FFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 9689899999999971999999984799
No 453
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.51 E-value=0.0085 Score=37.53 Aligned_cols=19 Identities=42% Similarity=0.690 Sum_probs=16.0
Q ss_pred CCEEEECCCCCCHHHHHHH
Q ss_conf 8669967988868999999
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRR 72 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAkt 72 (437)
+|+|+.+|||+|||+.+=.
T Consensus 1 ~~~lv~~ptGsGKT~~~~~ 19 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALL 19 (144)
T ss_pred CCEEEECCCCCHHHHHHHH
T ss_conf 9999988997179999999
No 454
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.51 E-value=0.0091 Score=37.33 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.5
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
-+-++||+|||||-|+|.+++.+.
T Consensus 33 ~~aiiG~NGsGKSTLl~~l~Gl~~ 56 (273)
T PRK13647 33 KTAILGPNGAGKSTLLLHLNGIYT 56 (273)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999759999999966988
No 455
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.50 E-value=0.0089 Score=37.39 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||+|+|||-|+|.+++.+.
T Consensus 33 ~aliG~NGaGKSTLl~~i~Gll~ 55 (277)
T PRK13652 33 IAVIGPNGAGKSTLFKHFNGILK 55 (277)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999479999999966999
No 456
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.50 E-value=0.0098 Score=37.13 Aligned_cols=28 Identities=25% Similarity=0.598 Sum_probs=22.1
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 656686-6996798886899999999970
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l 77 (437)
++.+.. +-++||+|||||-|.+.+++..
T Consensus 23 ~i~~Ge~v~i~GpSGsGKSTLl~~i~gl~ 51 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 98599899999799953999999996298
No 457
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.014 Score=36.05 Aligned_cols=41 Identities=29% Similarity=0.530 Sum_probs=29.5
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE
Q ss_conf 5668-66996798886899999999970787--79714341012
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE 91 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE 91 (437)
+.|. -+-++||+|||||-|++.|++++... =+.+|+..+++
T Consensus 26 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~ 69 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRD 69 (229)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCC
T ss_conf 87999999999999809999999966866787389999999541
No 458
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.47 E-value=0.0094 Score=37.24 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
+-++||+|||||-|+|.+++.+
T Consensus 40 ~aIiG~nGsGKSTL~~~l~Gll 61 (289)
T PRK13645 40 TCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEECCCCCHHHHHHHHHHCCC
T ss_conf 9999999957999999996598
No 459
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=95.47 E-value=0.009 Score=37.37 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=22.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC
Q ss_conf 6996798886899999999970787
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAP 80 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VP 80 (437)
+.++||+|||||.++++|.+.+.-+
T Consensus 45 vaLvGeSGSGKSTl~~~l~gll~~~ 69 (623)
T PRK10261 45 LAIVGESGSGKSVTALALMRLLEQA 69 (623)
T ss_pred EEEECCCCCHHHHHHHHHHCCCCCC
T ss_conf 9999899978999999997798788
No 460
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.018 Score=35.41 Aligned_cols=29 Identities=31% Similarity=0.520 Sum_probs=24.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 69967988868999999999707877971
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
|..-|+||||||-+||.|+..++++++.+
T Consensus 11 IgIaG~SgSGKTTv~~~l~~~~~~~~~~~ 39 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGVEKVVV 39 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 99867987788999999999828675247
No 461
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.46 E-value=0.013 Score=36.43 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=31.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE---------CCCCCCCH
Q ss_conf 6996798886899999999970787--79714341012---------12234310
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE---------IGYVGRNV 99 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE---------~gyvG~DV 99 (437)
+-++||||||||-|++.|.++.... -+.+|+....+ ++||..+.
T Consensus 32 iaIvG~sGsGKSTLl~ll~gl~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~Q~~ 86 (238)
T cd03249 32 VALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEP 86 (238)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCC
T ss_conf 9999999998999999982386188518999999923189999974069991589
No 462
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=95.46 E-value=0.012 Score=36.50 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=22.8
Q ss_pred CCEEEECCCCCCHHHHHHHHH--HHH--CCCEEEEE
Q ss_conf 866996798886899999999--970--78779714
Q gi|254780829|r 54 KNILLVGPTGVGKTAISRRLA--RLA--GAPFIKVE 85 (437)
Q Consensus 54 sNiLLiGPtGtGKTlLAktLA--~~l--~VPF~~~d 85 (437)
+-+|+.||||||||.||-..+ +.+ +-|-++++
T Consensus 20 s~~LI~G~pGsGKT~la~qfl~~ga~~~ge~~lYis 55 (231)
T pfam06745 20 RVVLITGGPGTGKTIFGLQFLYNGALEYGEPGVYVT 55 (231)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 699998589725999999999999986589689998
No 463
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.45 E-value=0.011 Score=36.89 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.8
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
-+-++||.|+|||-|.|.+++.+.
T Consensus 27 ~~~liGpNGaGKSTllk~i~Gl~~ 50 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999869999999976878
No 464
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=95.45 E-value=0.01 Score=37.00 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=16.6
Q ss_pred CCCEEEECCCCCCHHHHHH
Q ss_conf 6866996798886899999
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISR 71 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAk 71 (437)
-+|+++.+|||+|||+.+-
T Consensus 14 g~~~iv~~pTGsGKT~~~~ 32 (167)
T pfam00270 14 GKDVLVQAPTGSGKTLAFL 32 (167)
T ss_pred CCCEEEECCCCCCHHHHHH
T ss_conf 9978998899975899999
No 465
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=95.44 E-value=0.0096 Score=37.20 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
-+.|+||+|||||-|+|.|++.+.
T Consensus 31 ~~~LvG~NGaGKSTL~k~l~G~l~ 54 (490)
T PRK10938 31 SWAFVGSNGSGKSALARALAGELP 54 (490)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999997999779999999956998
No 466
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.44 E-value=0.011 Score=36.87 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=22.0
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf 6699679888689999999997078
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~V 79 (437)
-+-++||+|||||-|++.|++.+.-
T Consensus 54 ~vaIIG~nGsGKSTL~~~l~Gll~p 78 (320)
T PRK13631 54 IYFIIGNSGSGKSTLVTHFNGLIKS 78 (320)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999949998499999999758889
No 467
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=95.43 E-value=0.0094 Score=37.25 Aligned_cols=29 Identities=34% Similarity=0.617 Sum_probs=23.6
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 65668-669967988868999999999707
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.+. -+-++||.|||||-|.|++++.+.
T Consensus 29 ~I~~Ge~~~iiGpNGaGKSTLlk~i~Gll~ 58 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 985997999999988399999999974988
No 468
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.41 E-value=0.019 Score=35.25 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
|=..|+||+|||.||+.|...+.
T Consensus 2 IgIaG~S~SGKTTla~~L~~~l~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 89968888759999999999879
No 469
>PRK08233 hypothetical protein; Provisional
Probab=95.38 E-value=0.016 Score=35.73 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 66996798886899999999970
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l 77 (437)
=|-.-|+||+|||.||++|+..+
T Consensus 5 IIgIaGgSgSGKTtla~~l~~~l 27 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99996888678999999999974
No 470
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.37 E-value=0.0095 Score=37.21 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=22.1
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.+. -+-++||||||||-|+|.+++...
T Consensus 28 i~~Ge~~~ivG~SGsGKSTllr~i~gL~~ 56 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999988980589999999967999
No 471
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.36 E-value=0.022 Score=34.89 Aligned_cols=25 Identities=32% Similarity=0.640 Sum_probs=23.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6866996798886899999999970
Q gi|254780829|r 53 PKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 53 psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
-.|||.-||||.|||--|++||.+.
T Consensus 263 aeGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 263 AEGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred HCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1646995699997468999999999
No 472
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.012 Score=36.64 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.6
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 669967988868999999999707
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
=+-++||+|+|||-|++.+++.+.
T Consensus 34 ~~aiiG~NGaGKSTLl~~i~Gll~ 57 (285)
T PRK13636 34 VTAILGGNGAGKSTLFQNLNGILK 57 (285)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 999999999809999999965988
No 473
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.35 E-value=0.013 Score=36.34 Aligned_cols=43 Identities=35% Similarity=0.560 Sum_probs=33.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC-CCEEEEECCCEEECCCCCCCHHHH
Q ss_conf 69967988868999999999707-877971434101212234310134
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG-APFIKVEVTKFTEIGYVGRNVEQI 102 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~-VPF~~~daT~ftE~gyvG~DVes~ 102 (437)
-=|+|||||||+-+-|++-++-+ +|=+.++| |+-|-|.|+-+.
T Consensus 36 TAlIGPSGcGKST~LR~lNRmndl~~~~r~~G----~v~~~g~ni~~~ 79 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNRMNDLIPGARVEG----EVLLDGKNIYDP 79 (253)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCCCCEEEE----EEEECCEECCCC
T ss_conf 99888988678889999875411566656878----998888243577
No 474
>pfam02367 UPF0079 Uncharacterized P-loop hydrolase UPF0079. This uncharacterized family contains a P-loop.
Probab=95.34 E-value=0.017 Score=35.55 Aligned_cols=37 Identities=38% Similarity=0.503 Sum_probs=29.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECC
Q ss_conf 69967988868999999999707877971434101212
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIG 93 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~g 93 (437)
|+|.|+=|+|||.++|.+++.++++= .+.-.+|+=+-
T Consensus 18 i~L~G~LGaGKTtfvr~i~~~lg~~~-~V~SPTF~lv~ 54 (123)
T pfam02367 18 VLLSGDLGAGKTTFVRGLAKGLGITG-NVTSPTFTLVN 54 (123)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC-CCCCCCEEEEE
T ss_conf 99988877889999999999859988-73799558899
No 475
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.34 E-value=0.012 Score=36.50 Aligned_cols=45 Identities=27% Similarity=0.480 Sum_probs=29.9
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHH
Q ss_conf 65668-669967988868999999999707877971434101212234310134
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~ 102 (437)
++.+. -+-++||+|||||-|.|.+++... | .=-+.-|-|.++...
T Consensus 21 ~i~~Ge~~~liG~nGsGKTTLl~~i~G~~~-~-------~~G~I~~~g~~i~~~ 66 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLK-P-------SSGEILLDGKDLASL 66 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC-C-------CCCEEEECCEECCCC
T ss_conf 886997999998999889999999957989-9-------872899999998969
No 476
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=95.34 E-value=0.021 Score=34.93 Aligned_cols=48 Identities=33% Similarity=0.411 Sum_probs=34.5
Q ss_pred CCC--EEEECCCCCCHHHHHHHHHHHHC--CCEEEEECCCEE--------ECCCCCCCHH
Q ss_conf 686--69967988868999999999707--877971434101--------2122343101
Q gi|254780829|r 53 PKN--ILLVGPTGVGKTAISRRLARLAG--APFIKVEVTKFT--------EIGYVGRNVE 100 (437)
Q Consensus 53 psN--iLLiGPtGtGKTlLAktLA~~l~--VPF~~~daT~ft--------E~gyvG~DVe 100 (437)
++| +.|+||.|+|||-|.|.|++... ---+.+++-.+. .+||+-++..
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~Gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~ 88 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPS 88 (293)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHCEEEEEECCCC
T ss_conf 289599998999998999999996797788649999586275126765052999947877
No 477
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.33 E-value=0.012 Score=36.60 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=22.9
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.|. -+-++||.|+|||-|.|.|++.+.
T Consensus 23 i~~ge~~~l~G~NGsGKTTl~~~l~G~~~ 51 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 87999999998999849999999848988
No 478
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.31 E-value=0.012 Score=36.64 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=23.1
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 56686-69967988868999999999707
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.+.- +-++||+|||||-|+|.+++.+.
T Consensus 29 I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~ 57 (288)
T PRK13643 29 VKKGSYTALIGHTGSGKSTLLQHLNGLLQ 57 (288)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 85998999999999479999999974888
No 479
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.31 E-value=0.012 Score=36.46 Aligned_cols=22 Identities=41% Similarity=0.819 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
+-++||+|||||-|.|.+++..
T Consensus 31 ~~iiG~nGaGKSTLl~~l~gl~ 52 (242)
T PRK11124 31 LVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999971999999996588
No 480
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.30 E-value=0.091 Score=30.87 Aligned_cols=54 Identities=24% Similarity=0.497 Sum_probs=35.8
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHH--CCCEEEEECCCEEE---------CCCCCCCHHHHHH
Q ss_conf 56686-6996798886899999999970--78779714341012---------1223431013467
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTAISRRLARLA--GAPFIKVEVTKFTE---------IGYVGRNVEQIIR 104 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTlLAktLA~~l--~VPF~~~daT~ftE---------~gyvG~DVes~i~ 104 (437)
+.|.. +=.+||||+||+-|||.|-+.. --=-+..|+-++-+ .||-=.|||--..
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G 424 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG 424 (580)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCHHHHCCCHHHHCCCCCCCCCCCEECCC
T ss_conf 658866788788876577899999811356787377562645127988851131727654300577
No 481
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.28 E-value=0.022 Score=34.88 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=19.4
Q ss_pred EECCCCCCHHHHHHHHHHHHCC
Q ss_conf 9679888689999999997078
Q gi|254780829|r 58 LVGPTGVGKTAISRRLARLAGA 79 (437)
Q Consensus 58 LiGPtGtGKTlLAktLA~~l~V 79 (437)
..|+||||||.+|+.|+..++-
T Consensus 4 IaG~sgSGKST~a~~l~~~l~~ 25 (220)
T cd02025 4 IAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
T ss_conf 7889987799999999998600
No 482
>TIGR02858 spore_III_AA stage III sporulation protein AA; InterPro: IPR014217 Proteins in this entry include the stage III sporulation protein AA that is encoded by one of several genes in the spoIIIA locus. This protein is only found in species that are capable of endospore formation..
Probab=95.27 E-value=0.011 Score=36.74 Aligned_cols=41 Identities=34% Similarity=0.568 Sum_probs=30.5
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHH
Q ss_conf 6686699679888689999999997078779714341012122343101
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVE 100 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVe 100 (437)
..-|-|++|||=||||-|-|=||+.+ +|=+.+.|.-|.-|+
T Consensus 122 ~~~NTLiIsPPq~GKTTlLRDlaR~~--------StG~~~~~~~g~KVg 162 (282)
T TIGR02858 122 RVLNTLIISPPQCGKTTLLRDLARIL--------STGISKLGLKGKKVG 162 (282)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHH--------HCCCCCCCCCCCCEE
T ss_conf 44678888688988510488898886--------078542468997469
No 483
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.27 E-value=0.013 Score=36.29 Aligned_cols=28 Identities=36% Similarity=0.662 Sum_probs=22.8
Q ss_pred CCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 5668-669967988868999999999707
Q gi|254780829|r 51 LMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 51 ~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+.+. -+-++||.|+|||-|.|.+++...
T Consensus 27 i~~Gei~~LiGpNGaGKSTLlk~I~Gl~~ 55 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 87997999998999889999999966888
No 484
>TIGR00678 holB DNA polymerase III, delta' subunit; InterPro: IPR004622 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multi-chain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerisation to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This domain is the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tightly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classified as delta'. The noise cut-off is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication.
Probab=95.26 E-value=0.028 Score=34.22 Aligned_cols=27 Identities=33% Similarity=0.580 Sum_probs=24.0
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 566866996798886899999999970
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
-.+.-.||.||.|+||..+|..+|+-+
T Consensus 12 r~~HA~LF~G~~G~Gk~~~A~~~A~~l 38 (216)
T TIGR00678 12 RLAHAYLFTGPEGVGKELLALALAKAL 38 (216)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 788612544488874899999999998
No 485
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.26 E-value=0.013 Score=36.33 Aligned_cols=23 Identities=39% Similarity=0.732 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||.|+|||-|.|++++.+.
T Consensus 31 ~~liGpNGaGKSTLlk~i~Gl~~ 53 (255)
T PRK11231 31 TALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999819999999975988
No 486
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.26 E-value=0.014 Score=36.22 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=21.6
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHH
Q ss_conf 65668-6699679888689999999997
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARL 76 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~ 76 (437)
++.|. -+.++||+|+|||-|.|.|++.
T Consensus 29 ~i~~Ge~~~llGpnGaGKSTLl~~l~g~ 56 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9928839999999999889999998379
No 487
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=95.26 E-value=0.017 Score=35.66 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 668669967988868999999999
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLAR 75 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~ 75 (437)
.|+..|.+|-+||.==+|.=.+|.
T Consensus 85 ~~~~~l~~GnSGTt~RlL~glla~ 108 (662)
T PRK11860 85 VKKADLFLGNAGTAMRPLTAALAL 108 (662)
T ss_pred CCCCEEECCCCHHHHHHHHHHHHC
T ss_conf 998657737847899999999985
No 488
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=95.25 E-value=0.017 Score=35.62 Aligned_cols=29 Identities=31% Similarity=0.689 Sum_probs=23.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf 69967988868999999999707877971
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAGAPFIKV 84 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~VPF~~~ 84 (437)
|=.=||.||||+-+||.||+.++.+|+..
T Consensus 287 IAIDGPAgSGKSTvAK~lA~~L~~~yLDT 315 (512)
T PRK13477 287 IAIDGPAGAGKSTVTRAVAKKLGLLYLDT 315 (512)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCEECC
T ss_conf 99867875787899999999819968624
No 489
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.23 E-value=0.014 Score=36.17 Aligned_cols=45 Identities=29% Similarity=0.560 Sum_probs=32.2
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC--EEEEECCCEEE---------CCCCCCCH
Q ss_conf 66996798886899999999970787--79714341012---------12234310
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLARLAGAP--FIKVEVTKFTE---------IGYVGRNV 99 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA~~l~VP--F~~~daT~ftE---------~gyvG~DV 99 (437)
-+-++||+|||||-|.|.|.+....- -+.+|++...+ .+||..+.
T Consensus 30 ~i~IvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 85 (234)
T cd03251 30 TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDV 85 (234)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEECCCC
T ss_conf 99999899982999999996676678868999999966089999973179993689
No 490
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.011 Score=36.78 Aligned_cols=44 Identities=39% Similarity=0.628 Sum_probs=29.0
Q ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCEEECCCCCCCHHHH
Q ss_conf 56686-69967988868999999999707877971434101212234310134
Q gi|254780829|r 51 LMPKN-ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQI 102 (437)
Q Consensus 51 ~~psN-iLLiGPtGtGKTlLAktLA~~l~VPF~~~daT~ftE~gyvG~DVes~ 102 (437)
+.+.- +=++||.|||||.|.+.+++... | +--+..|-|.|+...
T Consensus 23 i~~Gei~~iiGpnGaGKSTl~~~i~Gl~~-p-------~~G~I~~~g~~i~~~ 67 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLER-P-------DSGEILIDGRDVTGV 67 (213)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC-C-------CCEEEEECCEECCCC
T ss_conf 88998999999999739999999975999-8-------970899999998889
No 491
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=95.21 E-value=0.017 Score=35.64 Aligned_cols=20 Identities=50% Similarity=0.687 Sum_probs=18.7
Q ss_pred CEEEECCCCCCHHHHHHHHH
Q ss_conf 66996798886899999999
Q gi|254780829|r 55 NILLVGPTGVGKTAISRRLA 74 (437)
Q Consensus 55 NiLLiGPtGtGKTlLAktLA 74 (437)
||||+|++|+|||-|.+.+-
T Consensus 1 ~Il~lGl~~sGKTtil~~l~ 20 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLK 20 (162)
T ss_pred CEEEECCCCCCHHHHHHHHH
T ss_conf 99999999998899999997
No 492
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.20 E-value=0.079 Score=31.25 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=27.2
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHC--CCEEEEEC
Q ss_conf 668669967988868999999999707--87797143
Q gi|254780829|r 52 MPKNILLVGPTGVGKTAISRRLARLAG--APFIKVEV 86 (437)
Q Consensus 52 ~psNiLLiGPtGtGKTlLAktLA~~l~--VPF~~~da 86 (437)
.++||+.+||||+|||-+.+++..+.. ...++++-
T Consensus 142 ~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEd 178 (312)
T COG0630 142 ARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIED 178 (312)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCEEEECC
T ss_conf 6994999888888649599999863785221899525
No 493
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I; InterPro: IPR011775 This entry represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll . This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. It is also found in certain archaea not known to make chlorins.; GO: 0005524 ATP binding, 0016851 magnesium chelatase activity, 0006779 porphyrin biosynthetic process.
Probab=95.20 E-value=0.035 Score=33.57 Aligned_cols=43 Identities=35% Similarity=0.640 Sum_probs=38.7
Q ss_pred CEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--CEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 304868999999999987788640864444665668--66996798886899999999970
Q gi|254780829|r 19 YIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPK--NILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 19 ~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~ps--NiLLiGPtGtGKTlLAktLA~~l 77 (437)
-||||++=|-+|=-.| |.|+ |||..|-=||||--=.||||-+|
T Consensus 5 AIVGQ~emKlAllL~v----------------idP~IGGVmvmGdRGTgKSTavRALAalL 49 (340)
T TIGR02030 5 AIVGQEEMKLALLLTV----------------IDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (340)
T ss_pred EEECHHHHHHHHHHEE----------------ECCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 5641688877775200----------------06885628886778983568999999749
No 494
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=95.20 E-value=0.017 Score=35.51 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHH
Q ss_conf 6996798886899999999970
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l 77 (437)
+.++||+|+|||-|.+.+++.+
T Consensus 25 taivG~NGaGKSTLl~~i~~~l 46 (204)
T cd03240 25 TLIVGQNGAGKTTIIEALKYAL 46 (204)
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999899999999999986304
No 495
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.20 E-value=0.014 Score=36.18 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 69967988868999999999707
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
+-++||+|+|||-|.|.|++...
T Consensus 40 ~~liG~NGaGKSTLl~~l~gl~~ 62 (265)
T PRK10575 40 TGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred EEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99999999809999999956889
No 496
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.19 E-value=0.16 Score=29.32 Aligned_cols=74 Identities=26% Similarity=0.148 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHCEECH-HHHHHHHHHHHHHHHH-----HHCCC---C-CCCCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 688899999862030486-8999999999987788-----64086---4-444665668669967988868999999999
Q gi|254780829|r 6 NFSPREIVSELDRYIIGQ-QDAKRAVAIALRNRWR-----RQQLP---A-DLRDELMPKNILLVGPTGVGKTAISRRLAR 75 (437)
Q Consensus 6 ~ltP~~i~~~Ld~~VvGQ-~~AKk~lavav~nhy~-----R~~~~---~-~~~~e~~psNiLLiGPtGtGKTlLAktLA~ 75 (437)
.+||.+.++.+=.-=-.| |.|-...+-++=.=|. +...+ . -.|....|+|+-|-||-|+|||.|.-.-=.
T Consensus 8 ~~sp~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~ 87 (367)
T COG1485 8 TMSPVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFYE 87 (367)
T ss_pred CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 77989999975056778888678999999999999862644455521110036888883588889978649999999986
Q ss_pred HHCC
Q ss_conf 7078
Q gi|254780829|r 76 LAGA 79 (437)
Q Consensus 76 ~l~V 79 (437)
.+-+
T Consensus 88 ~lp~ 91 (367)
T COG1485 88 SLPG 91 (367)
T ss_pred HCCC
T ss_conf 5876
No 497
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.14 E-value=0.015 Score=35.90 Aligned_cols=29 Identities=31% Similarity=0.571 Sum_probs=23.1
Q ss_pred CCCCC-CEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 65668-669967988868999999999707
Q gi|254780829|r 50 ELMPK-NILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~ps-NiLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.+. -+-++||.|+|||-|.|.+++.+.
T Consensus 24 ~i~~Gei~~liGpNGaGKSTLlk~i~Gl~~ 53 (257)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELP 53 (257)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 986998999999999879999999856757
No 498
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.12 E-value=0.015 Score=35.88 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=23.6
Q ss_pred CCCCCC-EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 656686-69967988868999999999707
Q gi|254780829|r 50 ELMPKN-ILLVGPTGVGKTAISRRLARLAG 78 (437)
Q Consensus 50 e~~psN-iLLiGPtGtGKTlLAktLA~~l~ 78 (437)
++.+.- +-++||.|+|||-|.|.|++.+.
T Consensus 23 ~i~~Gei~~liGpNGaGKSTLlk~l~Gl~~ 52 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 983897999999999809999999966888
No 499
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.10 E-value=0.021 Score=34.99 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=24.8
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 566866996798886899999999970
Q gi|254780829|r 51 LMPKNILLVGPTGVGKTAISRRLARLA 77 (437)
Q Consensus 51 ~~psNiLLiGPtGtGKTlLAktLA~~l 77 (437)
..|..+|+.||.|+||..+|+++|+.+
T Consensus 22 rl~HA~L~~G~~G~Gk~~la~~~a~~l 48 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 810467547999988999999999998
No 500
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.09 E-value=0.016 Score=35.83 Aligned_cols=21 Identities=38% Similarity=0.855 Sum_probs=0.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q ss_conf 699679888689999999997
Q gi|254780829|r 56 ILLVGPTGVGKTAISRRLARL 76 (437)
Q Consensus 56 iLLiGPtGtGKTlLAktLA~~ 76 (437)
+.++||||||||-|-|.|.+.
T Consensus 31 v~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 31 VVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999888999999778
Done!