HHsearch alignment for GI: 254780829 and conserved domain: pfam00158

>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=98.18  E-value=2.5e-06  Score=60.40  Aligned_cols=61  Identities=26%  Similarity=0.483  Sum_probs=44.8

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf             0486899999999998778864086444466566866996798886899999999970---787797143410121
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI   92 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~   92 (437)
T Consensus         1 lIG~S~~m~~l~~~i----~~~a~--------~~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~   64 (168)
T pfam00158         1 LIGESPAMQEVLELA----KRVAP--------TDATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEE   64 (168)
T ss_pred             CEECCHHHHHHHHHH----HHHHC--------CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf             973899999999999----99958--------89988998999888899999999852435688312567899877