HHsearch alignment for GI: 254780829 and conserved domain: pfam00158
>pfam00158 Sigma54_activat Sigma-54 interaction domain.
Probab=98.18 E-value=2.5e-06 Score=60.40 Aligned_cols=61 Identities=26% Similarity=0.483 Sum_probs=44.8
Q ss_pred EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH---CCCEEEEECCCEEEC
Q ss_conf 0486899999999998778864086444466566866996798886899999999970---787797143410121
Q gi|254780829|r 20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA---GAPFIKVEVTKFTEI 92 (437)
Q Consensus 20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l---~VPF~~~daT~ftE~ 92 (437)
T Consensus 1 lIG~S~~m~~l~~~i----~~~a~--------~~~pVLI~GE~GtGK~~lAr~IH~~S~r~~~pfi~vnc~~~~~~ 64 (168)
T pfam00158 1 LIGESPAMQEVLELA----KRVAP--------TDATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAAIPEE 64 (168)
T ss_pred CEECCHHHHHHHHHH----HHHHC--------CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf 973899999999999----99958--------89988998999888899999999852435688312567899877