HHsearch alignment for GI: 254780829 and conserved domain: pfam06068
>pfam06068 TIP49 TIP49 C-terminus. This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear
Probab=99.01 E-value=1.1e-09 Score=82.22 Aligned_cols=72 Identities=21% Similarity=0.407 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH--CCCEE
Q ss_conf 7688899999862030486899999999998778864086444466566866996798886899999999970--78779
Q gi|254780829|r 5 FNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA--GAPFI 82 (437)
Q Consensus 5 ~~ltP~~i~~~Ld~~VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l--~VPF~ 82 (437)
T Consensus 15 ~~~~~~~~~----~GlVGQ~~AReAagiiv~----mIk~~-----K~aGraiLlaGppGTGKTAlA~aiakeLG~~vPF~ 81 (395)
T pfam06068 15 EDGEARYVS----EGLVGQEKAREAAGVIVE----MIKEG-----KIAGRAVLIAGPPGTGKTALAIAISKELGEDTPFC 81 (395)
T ss_pred CCCCEEECC----CCCCCHHHHHHHHHHHHH----HHHHC-----CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 888883645----775454999999899999----99727-----75773899877999888999999999748799734
Q ss_pred EEECCCE
Q ss_conf 7143410
Q gi|254780829|r 83 KVEVTKF 89 (437)
Q Consensus 83 ~~daT~f 89 (437)
T Consensus 82 ~i~gSEv 88 (395)
T pfam06068 82 PISGSEV 88 (395)
T ss_pred EEEHHEE
T ss_conf 5001112