HHsearch alignment for GI: 254780829 and conserved domain: pfam07724

>pfam07724 AAA_2 AAA domain (Cdc48 subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.

Probab=99.65  E-value=3.9e-17  Score=130.50  Aligned_cols=68  Identities=31%  Similarity=0.511  Sum_probs=49.2

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCC---CEEEEECCCEEEC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             86699679888689999999997078---7797143410121-----------223431013467888765212789985
Q gi|254780829|r   54 KNILLVGPTGVGKTAISRRLARLAGA---PFIKVEVTKFTEI-----------GYVGRNVEQIIRDLVDVAINIVRESRR  119 (437)
Q Consensus        54 sNiLLiGPtGtGKTlLAktLA~~l~V---PF~~~daT~ftE~-----------gyvG~DVes~i~~l~~~a~~~~~~a~~  119 (437)
T Consensus         4 ~~~l~~GPsGvGKT~lAk~la~~l~~~~~~~i~~dm~e~~~~~~v~~l~g~~~gyvg~~~~G~l~~-------~v~~~p~   76 (168)
T pfam07724         4 GSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGGQLTE-------AVRRKPY   76 (168)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHH-------HHHHCCC
T ss_conf             799988989989999999999996798534488557565425699987058998726242650789-------9983898


Q ss_pred             HHHHHHHHH
Q ss_conf             654988886
Q gi|254780829|r  120 DEVREQASI  128 (437)
Q Consensus       120 ~i~~~~~~~  128 (437)
T Consensus        77 ~VillDEIe   85 (168)
T pfam07724        77 SIVLIDEIE   85 (168)
T ss_pred             CEEEEHHHH
T ss_conf             489865776