HHsearch alignment for GI: 254780829 and conserved domain: pfam08298

>pfam08298 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.62  E-value=0.032  Score=33.80  Aligned_cols=64  Identities=23%  Similarity=0.368  Sum_probs=40.7

Q ss_pred             EECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH-CCCEEEEECCCEEE
Q ss_conf             0486899999999998778864086444466566866996798886899999999970-78779714341012
Q gi|254780829|r   20 IIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKTAISRRLARLA-GAPFIKVEVTKFTE   91 (437)
Q Consensus        20 VvGQ~~AKk~lavav~nhy~R~~~~~~~~~e~~psNiLLiGPtGtGKTlLAktLA~~l-~VPF~~~daT~ftE   91 (437)
T Consensus        60 ffGme~~i~~iV~~~----ks----AA~g~e~~kqIllL~GPVGsGKSsl~e~LK~glE~y~~Y~i~gsPm~e  124 (358)
T pfam08298        60 FFGMEETIERIVNYF----RH----AAQGLEERKQILYLLGPVGGGKSSLAERLKKLLELVPIYALKGSPVFE  124 (358)
T ss_pred             CCCHHHHHHHHHHHH----HH----HHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             001599999999999----99----972367210589997789877589999999872058648844897778