HHsearch alignment for GI: 254780829 and conserved domain: pfam10431
>pfam10431 ClpB_D2-small C-terminal, D2-small domain, of ClpB protein. This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA, pfam00004) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilize the functional assembly. The domain is associated with two Clp_N, pfam02861, at the N-terminus as well as AAA, pfam00004 and AAA_2, pfam07724.
Probab=98.15 E-value=1.5e-05 Score=55.35 Aligned_cols=79 Identities=27% Similarity=0.369 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCC---
Q ss_conf 42467888764346889999999987519689984249999999999840400123724679999998677621275---
Q gi|254780829|r 329 LNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSAS--- 405 (437)
Q Consensus 329 L~~~~l~~IL~epk~~l~~q~~~lf~~~~v~L~ft~~Al~~IA~~A~~~~t~~~~~GAR~LrtI~E~~l~d~~fe~p--- 405 (437)
T Consensus 1 L~~~~l~~Iv~~----~l~~l~~rl~~~~i~l~~~~~~~~~i~~~~~~~~-----~GAR~l~r~I~~~i~~~la~~il~~ 71 (89)
T pfam10431 1 LSKEELRQIVDL----QLKRLQKRLAERGITLELTDAAKDWLAEKGYDPE-----YGARPLRRAIQREIEDPLAEEILSG 71 (89)
T ss_pred CCHHHHHHHHHH----HHHHHHHHHHHCCEEEEECHHHHHHHHHHCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988999999999----9999999999789079986899999998356756-----7947899999999999999999849
Q ss_pred -CCCCCEEEECH
Q ss_conf -68776899859
Q gi|254780829|r 406 -DLQEKTVVIDA 416 (437)
Q Consensus 406 -~~~~~~v~Id~ 416 (437)
T Consensus 72 ~~~~~~~i~i~~ 83 (89)
T pfam10431 72 ELKEGDTVRVDV 83 (89)
T ss_pred CCCCCCEEEEEE
T ss_conf 899979999971