RPSBLAST alignment for GI: 254780829 and conserved domain: TIGR00390

>gnl|CDD|161852 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. Length = 441

 Score =  512 bits (1319), Expect = e-146
 Identities = 224/441 (50%), Positives = 318/441 (72%), Gaps = 12/441 (2%)

Query: 8   SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVGPTGVGKT 67
           +PREIV+ELD+YIIGQ +AK++VAIALRNR+RR QL  +L+DE+ PKNIL++GPTGVGKT
Sbjct: 2   TPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKT 61

Query: 68  AISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRDEVREQAS 127
            I+RRLA+LA APFIKVE TKFTE+GYVGR+VE ++RDL D A+ +V+E   ++VR++A 
Sbjct: 62  EIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAE 121

Query: 128 INAEERILDALV-----------GKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDI 176
             AEERI+D L+            +    + RE FRKKLR+GE+ DKEI+I+V+      
Sbjct: 122 ELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSG 181

Query: 177 SNFDIPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRD 236
                P G     + L  LF  + G  +KKK ++ ++     L+ +E+ +L+D + + ++
Sbjct: 182 IEIMAPPGMEEMTMQLQSLFQNLGGQ-KKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQE 240

Query: 237 SIQMVENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHI 296
           +I  VE  GI+F+DE DKI  +   +G  VSREGVQRDLLP+VEGS+V+TKYG + TDHI
Sbjct: 241 AIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHI 300

Query: 297 LFIASGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTE 356
           LFIA+GAF +++P+DL+PE+QGRFP+RV L++L   DF  ILT+ +++LI QYK LMKTE
Sbjct: 301 LFIAAGAFQLAKPSDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTE 360

Query: 357 GIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDA 416
           G+ ++F++++I  +A++A N+N    +IGARRL TV+ER+LEDISF A DL  + + IDA
Sbjct: 361 GVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPDLSGQNITIDA 420

Query: 417 EYVRLHIGDFPSETDMYHFIL 437
           +YV   +G   ++ D+  FIL
Sbjct: 421 DYVSKKLGALVADEDLSRFIL 441