BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] (437 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/437 (100%), Positives = 437/437 (100%) Query: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG Sbjct: 1 MKLTFNFSPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMPKNILLVG 60 Query: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD Sbjct: 61 PTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAINIVRESRRD 120 Query: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD Sbjct: 121 EVREQASINAEERILDALVGKTATSNTREVFRKKLRDGEISDKEIDIEVADTSSDISNFD 180 Query: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM Sbjct: 181 IPGGASVGILNLSELFSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQM 240 Query: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA Sbjct: 241 VENYGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVEGSSVSTKYGSINTDHILFIA 300 Query: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL Sbjct: 301 SGAFHVSRPADLLPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIIL 360 Query: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR Sbjct: 361 DFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVIDAEYVR 420 Query: 421 LHIGDFPSETDMYHFIL 437 LHIGDFPSETDMYHFIL Sbjct: 421 LHIGDFPSETDMYHFIL 437 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 2/113 (1%) Query: 8 SPREIVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRD-ELMPKNILLVGPTGVGK 66 +P+EI+ LD Y+IGQ AK+ +A+A+ N ++R + + EL NILLVGPTG GK Sbjct: 67 NPQEILRVLDEYVIGQGQAKKVLAVAVHNHYKRLAHSSKSSNVELAKSNILLVGPTGCGK 126 Query: 67 TAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVA-INIVRESR 118 T +++ LAR+ PF + T TE GYVG +VE II L+ A N+ R R Sbjct: 127 TYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYNVERAQR 179 Score = 72.8 bits (177), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 57/222 (25%) Query: 245 GIVFLDEFDKIVARDSGNGIG--VSREGVQRDLLPLVEGSSVST-----------KYGSI 291 GIV++DE DKI + I VS EGVQ+ LL ++EG+ S ++ + Sbjct: 180 GIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPQQEFLQV 239 Query: 292 NTDHILFIASGAFHV------------------------SRPAD---------------L 312 +T +ILFI GAF +RP L Sbjct: 240 DTTNILFICGGAFAGLDRIISARGEKASIGFSAVVKDSDNRPVGEVLRNLESEDLVKFGL 299 Query: 313 LPEIQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEGIILDFTEDSIDALAD 372 +PE GR PV L+ L+++ IL++ ++ LI QY+ L E + L F ED++ +A Sbjct: 300 IPEFIGRLPVLATLEDLDENSLIRILSEPKNALIKQYQCLFDMEDVELVFHEDALREIAR 359 Query: 373 VAVNLNSTVGDIGARRLQTVMERVLEDISFSASDLQEKTVVI 414 A+ + GAR L++++E++L D F L+ + VI Sbjct: 360 CAIAHKT-----GARGLRSILEKILLDTMFELPMLKGVSSVI 396 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 45.1 bits (105), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 2/61 (3%) Query: 52 MPKNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIRDLVDVAI 111 +P +LLVGP G GKT ++R +A A PF + + F E+ +VG + +RD+ + A Sbjct: 180 IPHGVLLVGPPGTGKTLLARAVAGEANVPFFTISGSDFVEL-FVGVGASR-VRDMFEQAK 237 Query: 112 N 112 N Sbjct: 238 N 238 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 10/90 (11%) Query: 12 IVSELDRYIIGQQDAKRAVAIALRNRWRRQQLPADLRDELMP-KNILLVGPTGVGKTAIS 70 I +E+ + +IGQ A +V+ ALR R+R A L+D P + + +GPTGVGKT + Sbjct: 562 IETEISKSVIGQSAAVESVSNALR-RFR-----AGLQDPQRPMGSFMFLGPTGVGKTELV 615 Query: 71 RRLARLA---GAPFIKVEVTKFTEIGYVGR 97 + LARL I+++++++ E V R Sbjct: 616 KSLARLLFDDENSMIRIDMSEYMEKHSVSR 645 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 12/20 (60%), Positives = 14/20 (70%) Query: 55 NILLVGPTGVGKTAISRRLA 74 N +L+G GVGKTAI LA Sbjct: 201 NPVLIGDPGVGKTAIIEGLA 220 >gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 798 Score = 38.1 bits (87), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 11/60 (18%) Query: 60 GPTGVGKTAISRRLARLAGAPFIKVEVTKFTE-----------IGYVGRNVEQIIRDLVD 108 GPTGVGKT IS++LA G ++ +++++ E GYVG I+ D VD Sbjct: 514 GPTGVGKTEISKQLAFALGVQLLRFDMSEYMERHAVSRLIGAPPGYVGFGQGGILADSVD 573 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 55 NILLVGPTGVGKTAISRRLAR 75 N L VG GVGKTAI+ A+ Sbjct: 227 NPLYVGDPGVGKTAIAEGFAK 247 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 31.2 bits (69), Expect = 0.038, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 21/29 (72%) Query: 56 ILLVGPTGVGKTAISRRLARLAGAPFIKV 84 + VGP GVGKT++++ +A+ G ++++ Sbjct: 369 LCFVGPPGVGKTSLAQSIAKATGRQYVRM 397 >gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter asiaticus str. psy62] Length = 334 Score = 29.3 bits (64), Expect = 0.12, Method: Compositional matrix adjust. Identities = 12/27 (44%), Positives = 19/27 (70%) Query: 55 NILLVGPTGVGKTAISRRLARLAGAPF 81 ++L VGP G+GKT +++ +AR G F Sbjct: 56 HVLFVGPPGLGKTTLAQVVARELGVNF 82 >gi|254780710|ref|YP_003065123.1| diaminopimelate epimerase [Candidatus Liberibacter asiaticus str. psy62] Length = 296 Score = 28.5 bits (62), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 7/75 (9%) Query: 196 FSKVMGSGRKKKIRMSVQKCYPELMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDKI 255 F+K+ G G K + + ++ C+ + D + L D H D I ++ ++ +D F +I Sbjct: 8 FAKMEGIGNKILV-IDMRGCHDNITSDAINALSTDDNTHFDQIMLIHDFQDASVDAFIRI 66 Query: 256 VARD------SGNGI 264 + D GNG+ Sbjct: 67 INCDGSEVQSCGNGM 81 >537021.9.peg.472_1 Length = 369 Score = 27.3 bits (59), Expect = 0.48, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 54 KNILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNVEQIIR-DLVDVA-I 111 ++ +L G G+GKT +R +AR ++V G+ G + + IIR + VDV + Sbjct: 22 QSYMLSGTRGIGKTTTARIIARSLNYKTAHIDVPTVEFEGF-GEHCQAIIRGNHVDVVEL 80 Query: 112 NIVRESRRDEVRE 124 + + D+VRE Sbjct: 81 DAASHTSIDDVRE 93 >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 26.9 bits (58), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 7/59 (11%) Query: 52 MPKNIL--LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFT-EIGYVGRNVEQIIRDLV 107 +P+N + L+GP+G GK+ R L R+ ++ FT EI G+N+ Q D+V Sbjct: 29 IPQNSVTALIGPSGCGKSTFLRCLNRMNET----IDNCVFTGEIILDGKNIYQSSVDVV 83 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 26.6 bits (57), Expect = 0.86, Method: Compositional matrix adjust. Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%) Query: 50 ELMP-KNILLVGPTGVGKTAISRRLARL 76 E+ P K L+G +GVGK+ +++ L RL Sbjct: 379 EIAPSKKTALIGESGVGKSTVAKLLYRL 406 >gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 25.8 bits (55), Expect = 1.4, Method: Compositional matrix adjust. Identities = 11/23 (47%), Positives = 16/23 (69%) Query: 53 PKNILLVGPTGVGKTAISRRLAR 75 P IL+VG GVGKT + +L++ Sbjct: 111 PHVILVVGVNGVGKTTVIGKLSK 133 >gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 222 Score = 25.8 bits (55), Expect = 1.5, Method: Compositional matrix adjust. Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 7/36 (19%) Query: 48 RDELMP-----KNILLV--GPTGVGKTAISRRLARL 76 RD L P + ++L+ P+GVGK+ I+R L + Sbjct: 3 RDRLFPLTVNHRGMMLIISSPSGVGKSTIARHLLKC 38 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 25.4 bits (54), Expect = 1.8, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 28/129 (21%) Query: 58 LVGPTGVGKTAISRRLARLAGAPFIKVEV-------TKFTE----IGYVGRNV---EQII 103 LVGP+G GK+ I L R+ +E+ F+ I YVG++V + Sbjct: 384 LVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTV 443 Query: 104 RDLVDVAINIVRESRRDEVREQASINAEERIL------DALVGKTATSNTR------EVF 151 R + + + E E+ + A NA + I+ D VG+ ++ + + Sbjct: 444 RYNILIGRPMATEEEMIEIAKSA--NAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIA 501 Query: 152 RKKLRDGEI 160 R LRDG I Sbjct: 502 RAMLRDGHI 510 >gi|254780316|ref|YP_003064729.1| phenylalanyl-tRNA synthetase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 805 Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust. Identities = 12/36 (33%), Positives = 19/36 (52%) Query: 219 LMRDESDRLIDMDTVHRDSIQMVENYGIVFLDEFDK 254 M E RL +D DS++++E G + E+DK Sbjct: 406 FMNSEVKRLSGIDVPIEDSLRILERLGFSVIGEYDK 441 >gi|254781011|ref|YP_003065424.1| orotate phosphoribosyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 228 Score = 24.6 bits (52), Expect = 3.4, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 16/116 (13%) Query: 181 IPGGASVGI---------LNLSELF--SKVMGSGRKKKIRMSVQKCYPELMRDE----SD 225 I GG + GI LNL ++ K G+K +I + K L+ ++ + Sbjct: 81 IAGGETAGIPFATLLAERLNLPMIYVRKKSKKHGQKSQIEGHLFKGARVLVIEDLVTLGN 140 Query: 226 RLIDMDTVHRDSIQMVEN-YGIVFLDEFDKIVARDSGNGIGVSREGVQRDLLPLVE 280 + + V RDS ++++ G+ F D F ++ AR N I + D+L + E Sbjct: 141 SMFEFVKVIRDSGGIIQDGIGLFFYDIFPEVPARFRENNIKLHYLATWNDILTIAE 196 >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 24.3 bits (51), Expect = 4.0, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Query: 46 DLRDELMPKNIL-LVGPTGVGKTAISRRL 73 +L +L P I+ ++GP G GKT + R L Sbjct: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRML 363 >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 24.3 bits (51), Expect = 4.8, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 46 DLRDELMPKNIL-LVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRNV 99 D+ + P I+ L+GP G GK+ I++ + + V+ +GYV + V Sbjct: 28 DINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKV 82 >gi|254780132|ref|YP_003064545.1| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 186 Score = 23.9 bits (50), Expect = 5.0, Method: Compositional matrix adjust. Identities = 9/22 (40%), Positives = 16/22 (72%) Query: 52 MPKNILLVGPTGVGKTAISRRL 73 M +L+G +GVGKT I++++ Sbjct: 1 MAHIFVLIGASGVGKTTIAKQV 22 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 19/103 (18%) Query: 53 PKN-ILLVGPTGVGKTAISRRLARLAGAPFIKVEVTKFTEIGYVGRN------------V 99 PK I LVG G GK+ + + A + V + + +GY+ +N + Sbjct: 30 PKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFLHSSSRLGYLEQNPDLSHFSTISQYI 89 Query: 100 EQIIRDLVDVAINIVRESRRDEVREQASINAEERILDALVGKT 142 + I+D ++ + ++ +REQ +RI + VG+T Sbjct: 90 DDTIKDTIEAPYSPYSLLKKFNLREQ------DRIENLSVGQT 126 >gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 744 Score = 23.5 bits (49), Expect = 8.0, Method: Compositional matrix adjust. Identities = 11/42 (26%), Positives = 22/42 (52%) Query: 316 IQGRFPVRVHLKSLNKSDFRLILTDTESNLILQYKELMKTEG 357 I+ FP+R+ + +K D R IL + + +L +++ G Sbjct: 583 IKANFPIRISFQVTSKIDSRTILGEHGAEQLLGRGDMLYMSG 624 >gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator complex subunit SufB [Candidatus Liberibacter asiaticus str. psy62] Length = 489 Score = 23.1 bits (48), Expect = 9.7, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 344 NLILQYKELMKTEGIILDFTEDSIDALADVAVNLNSTVGDIGARRLQTVMERVLEDISF 402 +++ +KE +K G+I ++I D+ STV +G + V D SF Sbjct: 143 SVVTTFKEELKKSGVIFMPISEAICEHPDLVKKYLSTVVPVGDNFYAALNSAVFTDGSF 201 >gi|254780724|ref|YP_003065137.1| component of type IV pilus [Candidatus Liberibacter asiaticus str. psy62] Length = 483 Score = 23.1 bits (48), Expect = 9.9, Method: Compositional matrix adjust. Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 55 NILLVGPTGVGKTAISRRLAR 75 N+L+ G TG GKT + L R Sbjct: 252 NVLISGGTGSGKTTLLNCLTR 272 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.137 0.376 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 263,581 Number of Sequences: 1233 Number of extensions: 11093 Number of successful extensions: 82 Number of sequences better than 100.0: 26 Number of HSP's better than 100.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 33 length of query: 437 length of database: 328,796 effective HSP length: 77 effective length of query: 360 effective length of database: 233,855 effective search space: 84187800 effective search space used: 84187800 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)