Query gi|254780830|ref|YP_003065243.1| hypothetical protein CLIBASIA_03615 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 40 No_of_seqs 16 out of 18 Neff 1.7 Searched_HMMs 13730 Date Wed Jun 1 09:59:56 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780830.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2jdqd1 d.361.1.1 (D:688-756) 6.9 46 0.0033 14.9 -0.0 13 3-15 56-68 (69) 2 d2cupa3 g.39.1.3 (A:8-34) Four 6.5 70 0.0051 14.0 0.7 12 28-39 2-13 (27) 3 d1fida_ d.171.1.1 (A:) Fibrino 4.3 76 0.0055 13.9 -0.3 23 11-33 221-245 (259) 4 d1re3b1 d.171.1.1 (B:200-458) 3.4 1.1E+02 0.0081 13.1 -0.1 12 10-21 232-243 (259) 5 d1a5ta2 c.37.1.20 (A:1-207) de 3.4 1.4E+02 0.01 12.6 0.5 10 15-24 2-11 (207) 6 d2vgha_ g.25.1.1 (A:) Heparin- 2.7 1.6E+02 0.012 12.4 0.2 15 20-34 40-54 (55) 7 d2gtia2 d.294.1.2 (A:217-369) 2.4 1.7E+02 0.012 12.3 -0.0 11 11-21 136-146 (153) 8 d1lwub1 d.171.1.1 (B:219-477) 2.4 1.2E+02 0.0087 13.0 -0.8 23 12-34 235-259 (259) 9 d1lwuc1 d.171.1.1 (C:138-399) 2.3 1.8E+02 0.013 12.2 -0.1 24 12-35 226-251 (262) 10 d1js8a2 b.112.1.1 (A:2792-2892 2.1 2.3E+02 0.017 11.6 0.3 4 17-20 45-48 (101) No 1 >d2jdqd1 d.361.1.1 (D:688-756) Polymerase basic protein 2, BP2 {Influenza A virus [TaxId: 11320]} Probab=6.94 E-value=46 Score=14.87 Aligned_cols=13 Identities=38% Similarity=0.332 Sum_probs=8.7 Q ss_pred CCCCCHHHHCCCC Q ss_conf 3552112211311 Q gi|254780830|r 3 IDNESNQARKGIW 15 (40) Q Consensus 3 ~~~~~~Qa~Kg~w 15 (40) |-+.++|++|+++ T Consensus 56 i~td~~t~~kr~r 68 (69) T d2jdqd1 56 ILTDSQTATKRIR 68 (69) T ss_dssp -----CCCSCCCC T ss_pred HHHHHHHHHHHHC T ss_conf 4320577666403 No 2 >d2cupa3 g.39.1.3 (A:8-34) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=6.49 E-value=70 Score=14.04 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=9.1 Q ss_pred HHCCCCCCCCCC Q ss_conf 311333664347 Q gi|254780830|r 28 ICCDKLWGAANK 39 (40) Q Consensus 28 ~~CdK~rGa~n~ 39 (40) +-|.||-||+.+ T Consensus 2 ~ecrkpigad~k 13 (27) T d2cupa3 2 VECRKPIGADSK 13 (27) T ss_dssp SSSCCBCCSSSC T ss_pred CCCCCCCCCCHH T ss_conf 544477675637 No 3 >d1fida_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo sapiens), gamma [TaxId: 9606]} Probab=4.26 E-value=76 Score=13.88 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=14.1 Q ss_pred HCCCCCCCCC--CHHHHHHHHCCCC Q ss_conf 1131113420--0012222311333 Q gi|254780830|r 11 RKGIWWMPWH--AQAMKDVICCDKL 33 (40) Q Consensus 11 ~Kg~wWMPw~--~eaMKDV~~CdK~ 33 (40) .+||.|++|+ ...+|-|..--+| T Consensus 221 ~~GI~W~~w~g~~ysLK~~~MmIRP 245 (259) T d1fida_ 221 DNGIIWATWKTRWYSMKKTTMKIIP 245 (259) T ss_dssp CCBSEETTTSCTTBCCSEEEEEEEE T ss_pred CCEEEECCCCCCCCCEEEEEEEEEE T ss_conf 8804968778833220569999730 No 4 >d1re3b1 d.171.1.1 (B:200-458) Fibrinogen C-terminal domains {Human (Homo sapiens), beta [TaxId: 9606]} Probab=3.38 E-value=1.1e+02 Score=13.12 Aligned_cols=12 Identities=33% Similarity=1.132 Sum_probs=8.1 Q ss_pred HHCCCCCCCCCC Q ss_conf 211311134200 Q gi|254780830|r 10 ARKGIWWMPWHA 21 (40) Q Consensus 10 a~Kg~wWMPw~~ 21 (40) ...||+|.+|+- T Consensus 232 ~~~GI~W~~w~g 243 (259) T d1re3b1 232 TDDGVVWMNWKG 243 (259) T ss_dssp SCCBSEEHHHHB T ss_pred CCCCEEECCCCC T ss_conf 898049677899 No 5 >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Probab=3.36 E-value=1.4e+02 Score=12.65 Aligned_cols=10 Identities=30% Similarity=1.093 Sum_probs=5.9 Q ss_pred CCCCCCCHHH Q ss_conf 1134200012 Q gi|254780830|r 15 WWMPWHAQAM 24 (40) Q Consensus 15 wWMPw~~eaM 24 (40) .|-|||.++- T Consensus 2 ~~yPw~~~~~ 11 (207) T d1a5ta2 2 RWYPWLRPDF 11 (207) T ss_dssp CCCGGGHHHH T ss_pred CCCCCCHHHH T ss_conf 9871219999 No 6 >d2vgha_ g.25.1.1 (A:) Heparin-binding domain from vascular endothelial growth factor {Human (Homo sapiens) [TaxId: 9606]} Probab=2.73 E-value=1.6e+02 Score=12.35 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=8.4 Q ss_pred CCHHHHHHHHCCCCC Q ss_conf 000122223113336 Q gi|254780830|r 20 HAQAMKDVICCDKLW 34 (40) Q Consensus 20 ~~eaMKDV~~CdK~r 34 (40) ++|--.-.-.||||| T Consensus 40 QLELNERTCrcdkpr 54 (55) T d2vgha_ 40 QLELNERTCRCDKPR 54 (55) T ss_dssp TCEEETTTTEEECSC T ss_pred HHHHCCCEECCCCCC T ss_conf 633200102257889 No 7 >d2gtia2 d.294.1.2 (A:217-369) Nsp15, C-terminal domain {Murine hepatitis virus, MHV [TaxId: 11138]} Probab=2.44 E-value=1.7e+02 Score=12.29 Aligned_cols=11 Identities=27% Similarity=0.504 Sum_probs=8.2 Q ss_pred HCCCCCCCCCC Q ss_conf 11311134200 Q gi|254780830|r 11 RKGIWWMPWHA 21 (40) Q Consensus 11 ~Kg~wWMPw~~ 21 (40) -|-++||-|+- T Consensus 136 ~k~~rfMlWc~ 146 (153) T d2gtia2 136 FKDFQFMLWCN 146 (153) T ss_dssp TEEEEEEEETT T ss_pred CCEEEEEEEEC T ss_conf 60478999954 No 8 >d1lwub1 d.171.1.1 (B:219-477) Fibrinogen C-terminal domains {Sea lamprey (Petromyzon marinus), beta [TaxId: 7757]} Probab=2.41 E-value=1.2e+02 Score=12.98 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=0.0 Q ss_pred CCCCCCCC--CCHHHHHHHHCCCCC Q ss_conf 13111342--000122223113336 Q gi|254780830|r 12 KGIWWMPW--HAQAMKDVICCDKLW 34 (40) Q Consensus 12 Kg~wWMPw--~~eaMKDV~~CdK~r 34 (40) +||.|++| ....+|-|..--+|+ T Consensus 235 ~Gi~W~~w~g~~yslk~~~M~IRPk 259 (259) T d1lwub1 235 DGVVWMNWKGSWYSMRQMAMKLRPK 259 (259) T ss_dssp CSSEEHHHHCTTBCCSEEEEEEECC T ss_pred CCEEECCCCCCCCCEEEEEEEEEEC T ss_conf 9539636789642100589998019 No 9 >d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea lamprey (Petromyzon marinus), gamma [TaxId: 7757]} Probab=2.28 E-value=1.8e+02 Score=12.20 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=0.0 Q ss_pred CCCCCCCC--CCHHHHHHHHCCCCCC Q ss_conf 13111342--0001222231133366 Q gi|254780830|r 12 KGIWWMPW--HAQAMKDVICCDKLWG 35 (40) Q Consensus 12 Kg~wWMPw--~~eaMKDV~~CdK~rG 35 (40) .||.|.+| ....+|-|..--+|.+ T Consensus 226 ~Gi~W~~w~g~~ysLK~~~M~IRP~~ 251 (262) T d1lwuc1 226 DGIIWATWHDRWYSLKMTTMKLLPMG 251 (262) T ss_dssp CSSEEGGGSCTTCCCSEEEEEEEESS T ss_pred CCCEECCCCCCCCCCEEEEEEEEECC T ss_conf 93287877997435378999982588 No 10 >d1js8a2 b.112.1.1 (A:2792-2892) C-terminal domain of mollusc hemocyanin {Giant octopus (Octopus dofleini) [TaxId: 267067]} Probab=2.08 E-value=2.3e+02 Score=11.63 Aligned_cols=4 Identities=50% Similarity=1.157 Sum_probs=0.0 Q ss_pred CCCC Q ss_conf 3420 Q gi|254780830|r 17 MPWH 20 (40) Q Consensus 17 MPw~ 20 (40) |||+ T Consensus 45 MpW~ 48 (101) T d1js8a2 45 MFWA 48 (101) T ss_dssp CCCB T ss_pred CCCC T ss_conf 7511 Done!