254780831
hypothetical protein CLIBASIA_03620
| GeneID in NCBI database: | 8209842 | Locus tag: | CLIBASIA_03620 |
| Protein GI in NCBI database: | 254780831 | Protein Accession: | YP_003065244.1 |
| Gene range: | +(791462, 792487) | Protein Length: | 341aa |
| Gene description: | hypothetical protein | ||
| COG prediction: | [D] ATPases involved in chromosome partitioning | ||
| KEGG prediction: | hypothetical protein; K03593 ATP-binding protein involved in chromosome partitioning | ||
| SEED prediction: | Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like | ||
| Pathway involved in KEGG: | not defined | ||
| Subsystem involved in SEED: | - none - | ||
| sequence | sequence profile | ||
Prediction of Local Sequence Properties
| Source | Summary | Result |
|---|
|
|
Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
| Identity | Alignment graph | Length | Definition | E-value | |
| Target | 341 | hypothetical protein CLIBASIA_03620 [Candidatus Liberib | |||
| 254780881 | 101 | Mrp protein [Candidatus Liberibacter asiaticus str | 2e-53 | ||
| 254780491 | 101 | Mrp protein [Candidatus Liberibacter asiaticus str | 2e-53 | ||
| 254780806 | 265 | chromosome partitioning protein A [Candidatus Libe | 2e-06 |
| >gi|254780881|ref|YP_003065294.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62] Length = 101 | Back alignment |
|---|
Score = 201 bits (510), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS
Sbjct: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
Query: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA
Sbjct: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
|
| >gi|254780491|ref|YP_003064904.1| Mrp protein [Candidatus Liberibacter asiaticus str. psy62] Length = 101 | Back alignment |
|---|
Score = 201 bits (510), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/101 (100%), Positives = 101/101 (100%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS
Sbjct: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
Query: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA
Sbjct: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVA 101
|
| >gi|254780806|ref|YP_003065219.1| chromosome partitioning protein A [Candidatus Liberibacter asiaticus str. psy62] Length = 265 | Back alignment |
|---|
Score = 44.7 bits (104), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 65/118 (55%), Gaps = 21/118 (17%)
Query: 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKK 155
+ + +A+ KGGVGK+TT +N++ AL G+NV ++D D G + L +E+ D+K
Sbjct: 7 RIITIANQKGGVGKTTTAINLSTALAAIGENVLLIDLDPQGNASTGL-----GIELYDRK 61
Query: 156 FLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPG 213
+ +Y + I ++N+ I ++Q+AI ++ +++ +D L I+M G
Sbjct: 62 Y----SSYDLLIE------EKNINQI----LIQTAIPNL--SIIPSTMDLLGIEMILG 103
|
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
| Identity | Alignment graph | Length | Definition | Round | E-value |
| Target | 341 | hypothetical protein CLIBASIA_03620 [Candidatus Liberib | |||
| 315122330 | 348 | hypothetical protein CKC_02910 [Candidatus Liberibacter | 1 | 1e-155 | |
| 150395667 | 384 | hypothetical protein Smed_0442 [Sinorhizobium medicae W | 1 | 1e-101 | |
| 15964583 | 384 | putative MRP protein homolog ATP-binding [Sinorhizobium | 1 | 1e-101 | |
| 227821020 | 383 | putative ATP-binding Mrp family protein [Sinorhizobium | 1 | 1e-101 | |
| 153007409 | 389 | hypothetical protein Oant_0064 [Ochrobactrum anthropi A | 1 | 1e-101 | |
| 23500972 | 387 | mrp-like protein [Brucella suis 1330] Length = 387 | 1 | 1e-100 | |
| 225626603 | 394 | protein of unknown function DUF59 [Brucella ceti str. C | 1 | 1e-100 | |
| 148560560 | 394 | mrp-like protein [Brucella ovis ATCC 25840] Length = 39 | 1 | 1e-100 | |
| 306846369 | 387 | mrp-related protein [Brucella sp. BO1] Length = 387 | 1 | 1e-100 | |
| 225851598 | 387 | hypothetical protein BMEA_A0058 [Brucella melitensis AT | 1 | 1e-99 |
| >gi|315122330|ref|YP_004062819.1| hypothetical protein CKC_02910 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 348 | Back alignment and organism information |
|---|
Score = 550 bits (1418), Expect = e-155, Method: Compositional matrix adjust.
Identities = 265/345 (76%), Positives = 301/345 (87%), Gaps = 4/345 (1%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
MNQ ++ QI+D+LK+L IPGE NIV+M+RLS I IV NT YLSITVPH +A QLQSLR
Sbjct: 1 MNQNIEQQILDALKILYIPGETINIVDMKRLSNICIVQNTAYLSITVPHNLAQQLQSLRL 60
Query: 61 NAQQIIQNIPTVKNAVVTLTENKNPPQQ----RNNLNVKKFVAVASGKGGVGKSTTVVNI 116
NAQQI+QNIP +KNAVVTLTENK+ P N L + +A+ASGKGGVGKSTT VN+
Sbjct: 61 NAQQIVQNIPQIKNAVVTLTENKSKPILDPIIENKLKINALIAIASGKGGVGKSTTAVNL 120
Query: 117 ACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176
ACALKNK KNVAILDAD+YGPSIPKLL++SGK EI +KK LKP ENYGIKIMSMASLVD+
Sbjct: 121 ACALKNKNKNVAILDADIYGPSIPKLLQLSGKAEILEKKILKPMENYGIKIMSMASLVDD 180
Query: 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTP 236
NVAMIWRGPMVQSAIMHM NV WGQLDFLLIDMPPGTGDAHLT+AQKIPLSGVVIVSTP
Sbjct: 181 NVAMIWRGPMVQSAIMHMFQNVSWGQLDFLLIDMPPGTGDAHLTVAQKIPLSGVVIVSTP 240
Query: 237 QDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPF 296
QDLALIDVKRAI+MYQKM +PIIG+IENMSYF+ SDTGK+YDLFGNGG R EAEK+GIPF
Sbjct: 241 QDLALIDVKRAINMYQKMKVPIIGIIENMSYFVTSDTGKRYDLFGNGGVRAEAEKMGIPF 300
Query: 297 LESVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQFFV 341
LES+PFDMDVR+LSDLGIPIV+ N NS S++YQ+ISDRIQ++ +
Sbjct: 301 LESIPFDMDVRILSDLGIPIVIDNPNSVVSKMYQKISDRIQEYLL 345
|
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|150395667|ref|YP_001326134.1| hypothetical protein Smed_0442 [Sinorhizobium medicae WSM419] Length = 384 | Back alignment and organism information |
|---|
Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/363 (47%), Positives = 249/363 (68%), Gaps = 27/363 (7%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
M + + +++ L+ + P + NIV++ +S++FI Y SITVP A +L+ +R+
Sbjct: 1 MPDVTREMVLNKLRNVRGPDMEGNIVDLGLVSDVFISDGKAYFSITVPAARAKELEPMRA 60
Query: 61 NAQQIIQNIPTVKNAVVTLTENK------------------NPPQQRNN---------LN 93
A+++++ IP VK A+V LT ++ + P QR
Sbjct: 61 AAERVVREIPGVKAAMVALTADRKAAPQKTPAERHPEAPTGHAPAQRAGGGAAPKADIPG 120
Query: 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD 153
V +AVASGKGGVGKSTT VN+A AL+ G V +LDAD+YGPS+P+LLKISG+ + +
Sbjct: 121 VGAIIAVASGKGGVGKSTTSVNLALALQANGLKVGLLDADIYGPSMPRLLKISGRPQQIE 180
Query: 154 KKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPG 213
+ ++P ENYG+K+MSM LVDE VAMIWRGPM+QSA++ ML V WG LD L++DMPPG
Sbjct: 181 GRLIRPMENYGLKVMSMGFLVDEEVAMIWRGPMIQSALLQMLREVAWGDLDVLVVDMPPG 240
Query: 214 TGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDT 273
TGDA LT+AQ++PL+G VIVSTPQDLAL+D ++ ++M++K+ +P++G++ENMSYF+A DT
Sbjct: 241 TGDAQLTMAQQVPLAGAVIVSTPQDLALVDARKGLAMFRKVEVPVLGIVENMSYFVAPDT 300
Query: 274 GKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEIS 333
G++YD+FG+GGAR EAE+IG+PFL VP M +R SD G P+V + + +Y+EI+
Sbjct: 301 GRRYDIFGHGGARKEAERIGVPFLGEVPLTMAIRETSDAGTPLVASEPDGEVARLYREIA 360
Query: 334 DRI 336
R+
Sbjct: 361 ARV 363
|
Species: Sinorhizobium medicae Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|15964583|ref|NP_384936.1| putative MRP protein homolog ATP-binding [Sinorhizobium meliloti 1021] Length = 384 | Back alignment and organism information |
|---|
Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust.
Identities = 169/363 (46%), Positives = 249/363 (68%), Gaps = 27/363 (7%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
M + + +++ L+ + P + NIV++ +S++FI Y SITVP A +L+ +R+
Sbjct: 1 MPDVTREMVLEKLRTVRGPDMEGNIVDLGLVSDVFISDGKAYFSITVPADRAKELEPMRA 60
Query: 61 NAQQIIQNIPTVKNAVVTLTENK------------------NPPQQRNNL---------N 93
A+++++ IP V A+V LT ++ + P QR
Sbjct: 61 AAERVVREIPGVNAAMVALTADRKAAPQKAPVERPRPAPTGHAPAQRAGGGGAPKAGIPG 120
Query: 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD 153
V +AVASGKGGVGKSTT VN+A AL+ G V +LDAD+YGPS+P+LLKISG+ + +
Sbjct: 121 VGAIIAVASGKGGVGKSTTSVNLALALQANGLKVGLLDADIYGPSMPRLLKISGRPQQIE 180
Query: 154 KKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPG 213
+ ++P ENYG+K+MSM LVDE VAMIWRGPM+QSA++ ML V WG+LD L++DMPPG
Sbjct: 181 GRLIRPMENYGLKVMSMGFLVDEEVAMIWRGPMIQSALLQMLREVAWGELDVLVVDMPPG 240
Query: 214 TGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDT 273
TGDA LT+AQ++PL+G VIVSTPQDLAL+D ++ ++M++K+ +P++G++ENMSYF+A DT
Sbjct: 241 TGDAQLTMAQQVPLAGAVIVSTPQDLALVDARKGLAMFRKVEVPVLGIVENMSYFVAPDT 300
Query: 274 GKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEIS 333
G++YD+FG+GGAR EAE+IG+PFL VP M +R SD G P+V + + +Y++I+
Sbjct: 301 GRRYDIFGHGGARKEAERIGVPFLGEVPLTMGIRETSDAGTPLVASEPDGEVARVYRDIA 360
Query: 334 DRI 336
R+
Sbjct: 361 ARV 363
|
Species: Sinorhizobium meliloti Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|227821020|ref|YP_002824990.1| putative ATP-binding Mrp family protein [Sinorhizobium fredii NGR234] Length = 383 | Back alignment and organism information |
|---|
Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/364 (46%), Positives = 250/364 (68%), Gaps = 26/364 (7%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
M + + +++ L+ + P + NIV++ +S++FI Y SITVP A +L+ +R+
Sbjct: 1 MPDVTREMVLEKLRGVRGPDMEGNIVDLGLVSDVFISDGKAYFSITVPADRAKELEPMRA 60
Query: 61 NAQQIIQNIPTVKNAVVTLTENKN------------PPQQRNNL--------------NV 94
A+++++ IP VK A+V LT ++ PP + V
Sbjct: 61 AAERVVREIPGVKAAMVALTADRKAAPQAAPVQRPAPPSGHAHAPRPAGGAPAKAGIPGV 120
Query: 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK 154
+AVASGKGGVGKSTT VN+A AL+ G V +LDAD+YGPS+P+LLKISG+ + +
Sbjct: 121 GAIIAVASGKGGVGKSTTSVNLALALQANGLKVGLLDADIYGPSMPRLLKISGRPQQIEG 180
Query: 155 KFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGT 214
+ ++P ENYG+++MSM LVDE VAMIWRGPM+QSA++ ML V WG+LD L++DMPPGT
Sbjct: 181 RLIRPMENYGLRVMSMGFLVDEEVAMIWRGPMIQSALLQMLREVAWGELDVLVVDMPPGT 240
Query: 215 GDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTG 274
GDA LT+AQ++PL+G VIVSTPQDLAL D ++ I+M++K+ +P++G++ENMSYF+A DTG
Sbjct: 241 GDAQLTMAQQVPLAGAVIVSTPQDLALADARKGITMFRKVEVPVLGIVENMSYFVAPDTG 300
Query: 275 KKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISD 334
+YD+FG+GGAR EAE+IG+PFL VP M +R SD G P+VV + + + IY+ I++
Sbjct: 301 NRYDIFGHGGARKEAERIGVPFLGEVPLTMGIRETSDAGTPLVVSDPDGEVARIYRGIAE 360
Query: 335 RIQQ 338
R+ +
Sbjct: 361 RVWE 364
|
Species: Sinorhizobium fredii Genus: Sinorhizobium Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|153007409|ref|YP_001368624.1| hypothetical protein Oant_0064 [Ochrobactrum anthropi ATCC 49188] Length = 389 | Back alignment and organism information |
|---|
Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/369 (47%), Positives = 248/369 (67%), Gaps = 33/369 (8%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
M + + Q+ + LK ++ P ++++V + +S+IFI V+ SITVP A L+ +R
Sbjct: 1 MTSVTREQVQERLKTVTGPDFESDVVSLGLVSDIFIADGKVFFSITVPAARADALEPMRL 60
Query: 61 NAQQIIQNIPTVKNAVVTLT---------------------------ENKNPPQ-QRNNL 92
A++ ++ IP V A+VTLT ++++PPQ QR
Sbjct: 61 AAEKAVKEIPGVTGALVTLTAEKKGGRTSDDAPPPPKPQARPAAAPVQHRHPPQPQRAAT 120
Query: 93 -----NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISG 147
V +AVASGKGGVGKSTT VN+A L G V ILDAD+YGPS+P+LL +SG
Sbjct: 121 KPGIPGVGAIIAVASGKGGVGKSTTAVNLALGLAANGLKVGILDADIYGPSMPRLLGLSG 180
Query: 148 KVEISDKKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLL 207
+ E + + LKP ENYGIK+MSM +VDE MIWRGPMV SA+ ML V WG+LD L+
Sbjct: 181 RPETVEGRILKPMENYGIKVMSMGFMVDEETPMIWRGPMVMSALTQMLREVAWGELDVLV 240
Query: 208 IDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSY 267
+DMPPGTGDA LT+AQ++PL+G V+VSTPQDLALID ++ ++M++K+++P++G++ENMSY
Sbjct: 241 VDMPPGTGDAQLTMAQQVPLAGAVVVSTPQDLALIDARKGLNMFRKVDVPLLGIVENMSY 300
Query: 268 FLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSE 327
F+A DTG +YD+FGNGGAR EAE++ +PFL VP MDVR SD G PI VH +S ++
Sbjct: 301 FIAPDTGARYDIFGNGGARREAERLEVPFLGEVPLHMDVRAYSDAGTPITVHEPDSEHAK 360
Query: 328 IYQEISDRI 336
IY+EI+ ++
Sbjct: 361 IYREIARKV 369
|
Species: Ochrobactrum anthropi Genus: Ochrobactrum Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|23500972|ref|NP_697099.1| mrp-like protein [Brucella suis 1330] Length = 387 | Back alignment and organism information |
|---|
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/369 (46%), Positives = 250/369 (67%), Gaps = 31/369 (8%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
M + + Q+++ LK ++ P K+++V + +S+IFI V+ SITVP A L+ +R
Sbjct: 1 MAGVTREQVLERLKTVTGPDFKSDVVSLGLVSDIFIADGKVFFSITVPAERAEALEPMRL 60
Query: 61 NAQQIIQNIPTVKNAVVTLT--------------------------ENKNPPQQRNNL-- 92
A++++++IP + A+VTLT ++++PPQ R
Sbjct: 61 AAEKVVKDIPGITGALVTLTAEKKGGRTSDDAPPPPRPQARPAAASQHRHPPQPRPAAKP 120
Query: 93 ---NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV 149
V +AVASGKGGVGKSTT VN+A L G V ILDAD+YGPS+P+LL +SG+
Sbjct: 121 GVPGVGAIIAVASGKGGVGKSTTAVNLALGLAANGLKVGILDADIYGPSMPRLLGLSGRP 180
Query: 150 EISDKKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID 209
E + + LKP ENYGIK+MSM +VDE MIWRGPMV SA+ ML V WG+LD L++D
Sbjct: 181 ETVEGRILKPMENYGIKVMSMGFMVDEETPMIWRGPMVMSALTQMLREVAWGELDVLVVD 240
Query: 210 MPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFL 269
MPPGTGDA LT+AQ++PL+G V+VSTPQDLALID ++ ++M++K+++P++G++ENMSYF+
Sbjct: 241 MPPGTGDAQLTMAQQVPLAGAVVVSTPQDLALIDARKGLNMFRKVDVPLLGIVENMSYFI 300
Query: 270 ASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIY 329
A DTG +YD+FG+GGAR EAE++ +PFL VP MDVR SD G PI V +S ++IY
Sbjct: 301 APDTGTRYDIFGHGGARREAERLNVPFLGEVPLHMDVRAYSDNGTPITVKEPDSEHAKIY 360
Query: 330 QEISDRIQQ 338
++I+ ++ +
Sbjct: 361 RDIARKVWE 369
|
Species: Brucella suis Genus: Brucella Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|225626603|ref|ZP_03784642.1| protein of unknown function DUF59 [Brucella ceti str. Cudo] Length = 394 | Back alignment and organism information |
|---|
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/369 (46%), Positives = 250/369 (67%), Gaps = 31/369 (8%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
M + + Q+++ LK ++ P K+++V + +S+IFI V+ SITVP A L+ +R
Sbjct: 8 MAGVTREQVLERLKTVTGPDFKSDVVSLGLVSDIFIADGKVFFSITVPAERAEALEPMRL 67
Query: 61 NAQQIIQNIPTVKNAVVTLT--------------------------ENKNPPQQRNNL-- 92
A++++++IP + A+VTLT ++++PPQ R
Sbjct: 68 AAEKVVKDIPGITGALVTLTAEKKGGRTSDDAPPPPRPQARPAAASQHRHPPQPRPAAKP 127
Query: 93 ---NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV 149
V +AVASGKGGVGKSTT VN+A L G V ILDAD+YGPS+P+LL +SG+
Sbjct: 128 GVPGVGAIIAVASGKGGVGKSTTAVNLALGLAANGLKVGILDADIYGPSMPRLLGLSGRP 187
Query: 150 EISDKKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID 209
E + + LKP ENYGIK+MSM +VDE MIWRGPMV SA+ ML V WG+LD L++D
Sbjct: 188 ETVEGRILKPMENYGIKVMSMGFMVDEETPMIWRGPMVMSALTQMLREVAWGELDVLVVD 247
Query: 210 MPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFL 269
MPPGTGDA LT+AQ++PL+G V+VSTPQDLALID ++ ++M++K+++P++G++ENMSYF+
Sbjct: 248 MPPGTGDAQLTMAQQVPLAGAVVVSTPQDLALIDARKGLNMFRKVDVPLLGIVENMSYFI 307
Query: 270 ASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIY 329
A DTG +YD+FG+GGAR EAE++ +PFL VP MDVR SD G PI V +S ++IY
Sbjct: 308 APDTGTRYDIFGHGGARREAERLNVPFLGEVPLHMDVRAYSDNGTPITVKEPDSEHAKIY 367
Query: 330 QEISDRIQQ 338
++I+ ++ +
Sbjct: 368 RDIARKVWE 376
|
Species: Brucella ceti Genus: Brucella Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|148560560|ref|YP_001258103.1| mrp-like protein [Brucella ovis ATCC 25840] Length = 394 | Back alignment and organism information |
|---|
Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/369 (46%), Positives = 250/369 (67%), Gaps = 31/369 (8%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
M + + Q+++ LK ++ P K+++V + +S+IFI V+ SITVP A L+ +R
Sbjct: 8 MAGVTREQVLERLKTVTGPDFKSDVVSLGLVSDIFIADGKVFFSITVPAERAEALEPMRL 67
Query: 61 NAQQIIQNIPTVKNAVVTLT--------------------------ENKNPPQQRNNL-- 92
A++++++IP + A+VTLT ++++PPQ R
Sbjct: 68 AAEKVVKDIPGITGALVTLTAEKKGGRTSDDAPPPPRPQARPAAASQHRHPPQPRPAAKP 127
Query: 93 ---NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV 149
V +AVASGKGGVGKSTT VN+A L G V ILDAD+YGPS+P+LL +SG+
Sbjct: 128 GVPGVGAIIAVASGKGGVGKSTTAVNLALGLAANGLKVGILDADIYGPSMPRLLGLSGRP 187
Query: 150 EISDKKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID 209
E + + LKP ENYGIK+MSM +VDE MIWRGPMV SA+ ML V WG+LD L++D
Sbjct: 188 ETVEGRILKPMENYGIKVMSMGFMVDEETPMIWRGPMVMSALTQMLREVAWGELDVLVVD 247
Query: 210 MPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFL 269
MPPGTGDA LT+AQ++PL+G V+VSTPQDLALID ++ ++M++K+++P++G++ENMSYF+
Sbjct: 248 MPPGTGDAQLTMAQQVPLAGAVVVSTPQDLALIDARKGLNMFRKVDVPLLGIVENMSYFI 307
Query: 270 ASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIY 329
A DTG +YD+FG+GGAR EAE++ +PFL VP MDVR SD G PI V +S ++IY
Sbjct: 308 APDTGTRYDIFGHGGARREAERLNVPFLGKVPLHMDVRAYSDNGTPITVKEPDSEHAKIY 367
Query: 330 QEISDRIQQ 338
++I+ ++ +
Sbjct: 368 RDIARKVWE 376
|
Species: Brucella ovis Genus: Brucella Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|306846369|ref|ZP_07478920.1| mrp-related protein [Brucella sp. BO1] Length = 387 | Back alignment and organism information |
|---|
Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/369 (46%), Positives = 249/369 (67%), Gaps = 31/369 (8%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
M + + Q+++ LK ++ P K+++V + +S+IFI V+ SITVP A L+ +R
Sbjct: 1 MAGVTREQVLERLKTVTGPDFKSDVVSLGLVSDIFIADGKVFFSITVPAERAEALEPMRL 60
Query: 61 NAQQIIQNIPTVKNAVVTLT--------------------------ENKNPPQQRNNL-- 92
A++++++IP + A+VTLT ++++PPQ R
Sbjct: 61 AAEKVVKDIPGITGALVTLTAEKKGGRTSDDAPPPPRPQARPAAASQHRHPPQPRPAAKP 120
Query: 93 ---NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV 149
V +AVASGKGGVGKSTT VN+A L G V ILDAD+YGPS+P+LL +SG+
Sbjct: 121 GVPGVGAIIAVASGKGGVGKSTTAVNLALGLAANGLKVGILDADIYGPSMPRLLGLSGRP 180
Query: 150 EISDKKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID 209
E + + LKP ENYGIK+MSM +VDE MIWRGPMV SA+ ML V WG+LD L++D
Sbjct: 181 ETVEGRILKPMENYGIKVMSMGFMVDEETPMIWRGPMVMSALTQMLREVAWGELDVLVVD 240
Query: 210 MPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFL 269
MPPGTGDA LT+AQ++PL+G V+VSTPQDLALID ++ ++M++K+++P++G++ENMSYF+
Sbjct: 241 MPPGTGDAQLTMAQQVPLAGAVVVSTPQDLALIDARKGLNMFRKVDVPLLGIVENMSYFI 300
Query: 270 ASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIY 329
A DTG +YD+FG+GGAR EAE++ +PFL VP MDVR SD G PI V S ++IY
Sbjct: 301 APDTGTRYDIFGHGGARREAERLNVPFLGEVPLHMDVRAYSDNGTPITVKEPGSEHAKIY 360
Query: 330 QEISDRIQQ 338
++I+ ++ +
Sbjct: 361 RDIARKVWE 369
|
Species: Brucella sp. BO1 Genus: Brucella Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|225851598|ref|YP_002731831.1| hypothetical protein BMEA_A0058 [Brucella melitensis ATCC 23457] Length = 387 | Back alignment and organism information |
|---|
Score = 367 bits (943), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 172/369 (46%), Positives = 249/369 (67%), Gaps = 31/369 (8%)
Query: 1 MNQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRS 60
M + + Q+++ LK ++ P K+++V + +S+IFI V+ SITVP A L+ +R
Sbjct: 1 MAGVTREQVLERLKTVTGPDFKSDVVSLGLVSDIFIADGKVFFSITVPAERAEALEPMRL 60
Query: 61 NAQQIIQNIPTVKNAVVTLT--------------------------ENKNPPQQRNNL-- 92
A++++++IP + A+VTLT ++++PPQ R
Sbjct: 61 AAEKVVKDIPGITGALVTLTAEKKGGRTSDDAPPPPRPQARPAAASQHRHPPQPRPAAKP 120
Query: 93 ---NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV 149
V +AVASGKGGVGKSTT VN+A L G ILDAD+YGPS+P+LL +SG+
Sbjct: 121 GVPGVGAIIAVASGKGGVGKSTTAVNLALGLAANGLKAGILDADIYGPSMPRLLGLSGRP 180
Query: 150 EISDKKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID 209
E + + LKP ENYGIK+MSM +VDE MIWRGPMV SA+ ML V WG+LD L++D
Sbjct: 181 ETVEGRILKPMENYGIKVMSMGFMVDEETPMIWRGPMVMSALTQMLREVAWGELDVLVVD 240
Query: 210 MPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFL 269
MPPGTGDA LT+AQ++PL+G V+VSTPQDLALID ++ ++M++K+++P++G++ENMSYF+
Sbjct: 241 MPPGTGDAQLTMAQQVPLAGAVVVSTPQDLALIDARKGLNMFRKVDVPLLGIVENMSYFI 300
Query: 270 ASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIY 329
A DTG +YD+FG+GGAR EAE++ +PFL VP MDVR SD G PI V +S ++IY
Sbjct: 301 APDTGTRYDIFGHGGARREAERLNVPFLGEVPLHMDVRAYSDNGTPITVKEPDSEHAKIY 360
Query: 330 QEISDRIQQ 338
++I+ ++ +
Sbjct: 361 RDIARKVWE 369
|
Species: Brucella melitensis Genus: Brucella Family: Brucellaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
| Identity | Alignment graph | Length | Definition | E-value |
| Target | 341 | hypothetical protein CLIBASIA_03620 [Candidatus Liberib | ||
| PRK11670 | 369 | PRK11670, PRK11670, antiporter inner membrane protein; | 3e-72 | |
| cd02037 | 169 | cd02037, MRP-like, MRP (Multiple Resistance and pH adap | 1e-63 | |
| cd02036 | 179 | cd02036, MinD, Bacterial cell division requires the for | 6e-19 | |
| cd03110 | 179 | cd03110, Fer4_NifH_child, This protein family's functio | 3e-12 | |
| CHL00175 | 281 | CHL00175, minD, septum-site determining protein; Valida | 3e-11 | |
| cd02035 | 217 | cd02035, ArsA, ArsA ATPase functionas as an efflux pump | 3e-09 | |
| cd02033 | 329 | cd02033, BchX, Chlorophyllide reductase converts chloro | 4e-06 | |
| TIGR02016 | 296 | TIGR02016, BchX, chlorophyllide reductase iron protein | 6e-04 | |
| COG0489 | 265 | COG0489, Mrp, ATPases involved in chromosome partitioni | 3e-50 | |
| pfam10609 | 81 | pfam10609, ParA, ParA/MinD ATPase like | 2e-37 | |
| COG0455 | 262 | COG0455, COG0455, ATPases involved in chromosome partit | 1e-17 | |
| TIGR01969 | 251 | TIGR01969, minD_arch, cell division ATPase MinD, archae | 3e-17 | |
| COG1149 | 284 | COG1149, COG1149, MinD superfamily P-loop ATPase contai | 5e-13 | |
| COG2894 | 272 | COG2894, MinD, Septum formation inhibitor-activating AT | 1e-12 | |
| TIGR01968 | 261 | TIGR01968, minD_bact, septum site-determining protein M | 5e-12 | |
| COG1192 | 259 | COG1192, Soj, ATPases involved in chromosome partitioni | 1e-10 | |
| COG3640 | 255 | COG3640, CooC, CO dehydrogenase maturation factor [Cell | 1e-05 | |
| cd02040 | 270 | cd02040, NifH, NifH gene encodes component II (iron pro | 5e-05 | |
| KOG3022 | 300 | KOG3022, KOG3022, KOG3022, Predicted ATPase, nucleotide | 2e-70 | |
| pfam01656 | 212 | pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding | 1e-14 | |
| TIGR01007 | 204 | TIGR01007, eps_fam, capsular exopolysaccharide family | 1e-06 | |
| cd00550 | 254 | cd00550, ArsA_ATPase, Oxyanion-translocating ATPase (Ar | 2e-04 | |
| cd02038 | 139 | cd02038, FleN-like, FleN is a member of the Fer4_NifH s | 2e-09 | |
| cd02042 | 104 | cd02042, ParA, ParA and ParB of Caulobacter crescentus | 4e-07 | |
| cd01983 | 99 | cd01983, Fer4_NifH, The Fer4_NifH superfamily contains | 1e-05 | |
| PHA02518 | 211 | PHA02518, PHA02518, ParA-like protein; Provisional | 3e-05 | |
| PRK13230 | 279 | PRK13230, PRK13230, nitrogenase reductase-like protein; | 1e-04 | |
| TIGR03371 | 246 | TIGR03371, cellulose_yhjQ, cellulose synthase operon pr | 1e-04 | |
| PRK10818 | 270 | PRK10818, PRK10818, cell division inhibitor MinD; Provi | 2e-04 | |
| pfam09140 | 261 | pfam09140, MipZ, ATPase MipZ | 2e-04 | |
| TIGR01287 | 275 | TIGR01287, nifH, nitrogenase iron protein | 2e-04 | |
| cd02034 | 116 | cd02034, CooC, The accessory protein CooC, which contai | 3e-04 | |
| cd02117 | 212 | cd02117, NifH_like, This family contains the NifH (iron | 3e-04 | |
| COG1348 | 278 | COG1348, NifH, Nitrogenase subunit NifH (ATPase) [Inorg | 3e-04 | |
| PRK13185 | 270 | PRK13185, chlL, protochlorophyllide reductase iron-sulf | 5e-04 | |
| pfam00142 | 269 | pfam00142, Fer4_NifH, 4Fe-4S iron sulfur cluster bindin | 7e-04 | |
| cd03115 | 173 | cd03115, SRP, The signal recognition particle (SRP) med | 0.001 | |
| CHL00072 | 290 | CHL00072, chlL, photochlorophyllide reductase subunit L | 0.001 | |
| PRK13849 | 231 | PRK13849, PRK13849, putative crown gall tumor protein V | 0.001 | |
| TIGR03018 | 207 | TIGR03018, pepcterm_TyrKin, exopolysaccharide/PEPCTERM | 0.001 | |
| TIGR01281 | 268 | TIGR01281, DPOR_bchL, light-independent protochlorophyl | 0.001 | |
| cd02032 | 267 | cd02032, Bchl_like, This family of proteins contains bc | 0.002 | |
| cd03111 | 106 | cd03111, CpaE_like, This protein family consists of pro | 0.002 | |
| pfam07015 | 231 | pfam07015, VirC1, VirC1 protein | 0.002 | |
| TIGR03499 | 282 | TIGR03499, FlhF, flagellar biosynthetic protein FlhF | 0.002 |
| >gnl|CDD|183270 PRK11670, PRK11670, antiporter inner membrane protein; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 3e-72
Identities = 128/337 (37%), Positives = 197/337 (58%), Gaps = 5/337 (1%)
Query: 5 LKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQ 64
L+ + +L P K+N+ ++ L + ++ +T+++ + +P + L+
Sbjct: 13 LRAMVAGTLANFQHPTLKHNLTTLKALHHVALLDDTLHIELVMPFVWNSAFEELKEQCSA 72
Query: 65 IIQNIPTVKNAVVTLTENKNPPQQRNNL----NVKKFVAVASGKGGVGKSTTVVNIACAL 120
+ I K L+ N ++ NN VK +AV+SGKGGVGKS+T VN+A AL
Sbjct: 73 ELLRITGAKAIDWKLSHNIATLKRVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALAL 132
Query: 121 KNKGKNVAILDADVYGPSIPKLLKISGKVEIS-DKKFLKPKENYGIKIMSMASLVDENVA 179
+G V ILDAD+YGPSIP +L + S D + P +G+ S+ LV ++ A
Sbjct: 133 AAEGAKVGILDADIYGPSIPTMLGAEDQRPTSPDGTHMAPIMAHGLATNSIGYLVTDDNA 192
Query: 180 MIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDL 239
M+WRGPM A+M ML +W LD+L++DMPPGTGD LT+AQ IP++G V+V+TPQD+
Sbjct: 193 MVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDI 252
Query: 240 ALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES 299
ALID K+ I M++K+ +P++G++ENMS + S+ G +FG GGA AEK L
Sbjct: 253 ALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQ 312
Query: 300 VPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRI 336
+P + +R D G P VV S + IY++++DR+
Sbjct: 313 MPLHISLREDLDRGTPTVVSRPESEFTAIYRQLADRV 349
|
Length = 369 |
| >gnl|CDD|73300 cd02037, MRP-like, MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 1e-63
Identities = 99/207 (47%), Positives = 128/207 (61%), Gaps = 39/207 (18%)
Query: 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFL 157
+AV SGKGGVGKST VN+A AL G V +LDAD+YGPSIPK+
Sbjct: 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKM--------------- 46
Query: 158 KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA 217
WRGPM AI L +V WG+LD+L+IDMPPGTGD
Sbjct: 47 ------------------------WRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDE 82
Query: 218 HLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKY 277
HLT+AQ +P+ G VIV+TPQ++AL DV++AI M++K+NIPI+G++ENMSYF+ GKK
Sbjct: 83 HLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKI 142
Query: 278 DLFGNGGARFEAEKIGIPFLESVPFDM 304
+FG GG AE++G+P L +P D
Sbjct: 143 YIFGKGGGEKLAEELGVPLLGKIPLDP 169
|
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.. Length = 169 |
| >gnl|CDD|73299 cd02036, MinD, Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 6e-19
Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 58/234 (24%)
Query: 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFL 157
+ V SGKGGVGK+TT N+ AL G V ++DAD+ ++ +L + +V +
Sbjct: 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYT----- 56
Query: 158 KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG-D 216
LH+V+ G D++LID P G
Sbjct: 57 -------------------------------------LHDVLAG--DYILIDSPAGIERG 77
Query: 217 AHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKK 276
IA P ++V+TP+ +L D R + + + I ++G+I N +
Sbjct: 78 FITAIA---PADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRV---------R 125
Query: 277 YDLFGNGGARFEAEKI-GIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIY 329
D+ G + E+I G+P L +P D V ++ G P+V++ S ++ Y
Sbjct: 126 PDMVEGGDMVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAAQAY 179
|
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.. Length = 179 |
| >gnl|CDD|73339 cd03110, Fer4_NifH_child, This protein family's function is unkown | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-12
Identities = 57/206 (27%), Positives = 85/206 (41%), Gaps = 30/206 (14%)
Query: 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFL 157
+AV SGKGG GK+T +A LKN V + D DV P++ LK ++E + +
Sbjct: 2 IAVISGKGGTGKTTVTAALAALLKN----VVLADCDVDAPNLHLFLK--PEIEEEEDFIV 55
Query: 158 KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA 217
K K + L G +V H + ++ID PPG G
Sbjct: 56 GGK-----KAVIDPELCISCGLC---GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCP 107
Query: 218 HLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKY 277
IA ++V+ P L D++RA+ + + IP +G++ N KY
Sbjct: 108 --VIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIP-VGVVIN-----------KY 153
Query: 278 DLFGNGGARFE--AEKIGIPFLESVP 301
DL E E+ GIP L +P
Sbjct: 154 DLNDEIAEEIEDYCEEEGIPILGKIP 179
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.. Length = 179 |
| >gnl|CDD|164554 CHL00175, minD, septum-site determining protein; Validated | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 55/249 (22%), Positives = 112/249 (44%), Gaps = 28/249 (11%)
Query: 81 ENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIP 140
E + + + + + + SGKGGVGK+TT N+ ++ G VA++DAD+ ++
Sbjct: 1 EQITTEDKEKSATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLD 60
Query: 141 KLLKISGKVEIS-----------DKKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQS 189
LL + +V + D+ ++ K + +++++ R + +
Sbjct: 61 LLLGLENRVLYTAMDVLEGECRLDQALIRDKRWKNLSLLAISKNRQ-------RYNVTRK 113
Query: 190 AIMHMLHNVVWGQLDFLLIDMPPGTGDA-HLTIAQKIPLSGVVIVSTPQDLALIDVKRAI 248
+ ++ ++ D++LID P G IA P ++V+TP+ A+ D R
Sbjct: 114 NMNMLVDSLKNRGYDYILIDCPAGIDVGFINAIA---PAQEAIVVTTPEITAIRDADRVA 170
Query: 249 SMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRV 308
+ + I + ++ N + D + D+ R E +GIP L ++P D +V +
Sbjct: 171 GLLEANGIYNVKLLVNR---VRPDMIQANDMM---SVRDVQEMLGIPLLGAIPEDENVII 224
Query: 309 LSDLGIPIV 317
++ G P+V
Sbjct: 225 STNRGEPLV 233
|
Length = 281 |
| >gnl|CDD|73298 cd02035, ArsA, ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 3e-09
Identities = 40/187 (21%), Positives = 72/187 (38%), Gaps = 15/187 (8%)
Query: 102 SGKGGVGKSTTVVNIACALKNKGKNVAILDAD----VYGPSIPKL--LKISGKVEISDKK 155
+GKGGVGK+T A L +GK V ++ D + +P L I EI+
Sbjct: 5 TGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEIAPNL 64
Query: 156 FL---KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPP 212
+ L+ E +A G ++++ + G D ++ D P
Sbjct: 65 YREEVDATRRVERAWGGEGGLMLE-LAAALPGIEELASLLAVFREFSEGLYDVIVFDTAP 123
Query: 213 GTGDAHLTIAQKI----PLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYF 268
TG + +++ + +V+ P+ L L + +RAI+ IP+ ++ N
Sbjct: 124 -TGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLP 182
Query: 269 LASDTGK 275
D
Sbjct: 183 AEVDDDP 189
|
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.. Length = 217 |
| >gnl|CDD|48363 cd02033, BchX, Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 4e-06
Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 51/254 (20%)
Query: 78 TLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137
TL PP ++ + +A+ GKGG+GKS T+ N++ + +GK V ++ D
Sbjct: 19 TLEIPTAPPTKKTQI-----IAI-YGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSD 72
Query: 138 SIPKLLKISGK-----VEISDKKFLKPKENYGIKIMSMASLVDENVAMIWRGPMV----- 187
+ L GK +E S KK L +E ++I + D AM GP V
Sbjct: 73 TTSLLF--GGKACPTIIETSAKKKLAGEE---VQIGDVCFKRDGVFAMELGGPEVGRGCG 127
Query: 188 QSAIMHMLHNVV------WGQLDFLLIDMPPGT--GDAHLTIAQKIPLSGVVIVSTPQDL 239
I+H + W D++L+D G L IA+ ++ VIV DL
Sbjct: 128 GRGIIHGFELLEKLGFHDWD-FDYVLLDFLGDVVCGGFGLPIARD--MAQKVIVVGSNDL 184
Query: 240 ALI----DVKRAISMYQKM--NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIG 293
+ +V A+ ++K+ N+ + GM+ N K D G G A+ A G
Sbjct: 185 QSLYVANNVCNAVEYFRKLGGNVGVAGMVIN-----------KDD--GTGEAQAFAAHAG 231
Query: 294 IPFLESVPFDMDVR 307
IP L ++P D ++R
Sbjct: 232 IPILAAIPADEELR 245
|
This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.. Length = 329 |
| >gnl|CDD|162661 TIGR02016, BchX, chlorophyllide reductase iron protein subunit X | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 6e-04
Identities = 55/235 (23%), Positives = 103/235 (43%), Gaps = 51/235 (21%)
Query: 103 GKGGVGKSTTVVNIACALKNKGKNVAILDAD---------VYGPSIPKLLKISGKVEISD 153
GKGG GKS T N++ + GK V L D G S+P +++++ + +++
Sbjct: 7 GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAG 66
Query: 154 KKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSA-----IMH---MLHNVVWGQ--L 203
++ + IM+ + V M GP V I+H +L + +
Sbjct: 67 EEVKVGDVCFKTTIMNGSGGV---YGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHDWDF 123
Query: 204 DFLLIDMPPGTGDA-----HLTIAQKIPLSGVVIVSTPQDLALI----DVKRAISMYQKM 254
DF+L+D GD +A+ L+ VIV D + ++ A+ ++K+
Sbjct: 124 DFVLMDF---LGDVVCGGFATPLARS--LAEEVIVIGSNDRQSLYVANNICNAVEYFRKL 178
Query: 255 --NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR 307
+ ++G++ N + D G+G A+ A ++GIP L ++P D ++R
Sbjct: 179 GGRVGLLGLVVN-----------RDD--GSGEAQAFAREVGIPVLAAIPADEELR 220
|
This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein. Length = 296 |
| >gnl|CDD|30835 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 194 bits (493), Expect = 3e-50
Identities = 103/274 (37%), Positives = 153/274 (55%), Gaps = 17/274 (6%)
Query: 43 LSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNL--NVKKFVAV 100
+ I + A + + + + + A L + + L VK +AV
Sbjct: 3 VEIELALPFASSSEEIPELLAKALAALLPKSTASEALRALRTNLKFAKVLRKGVKNVIAV 62
Query: 101 ASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD----KKF 156
SGKGGVGKST VN+A AL GK V +LDAD+ GPSIP++L + +++ +
Sbjct: 63 TSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEAL 122
Query: 157 LKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGD 216
++ GIK++S+ L V +I RG + A++ +L +V+WG+ D+++ID PPGTGD
Sbjct: 123 EPVIQHDGIKVLSILPLGP--VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGD 180
Query: 217 AHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKK 276
A T+ Q+IP GVVIV+TP AL DVK+AI M +K IP++G++ENMSYF+ G+
Sbjct: 181 ADATVLQRIPD-GVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCGE- 238
Query: 277 YDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLS 310
GG AE+ G P+L S+P D R S
Sbjct: 239 ------GGGEKYAERYG-PYLGSIPLDPSAREAS 265
|
Length = 265 |
| >gnl|CDD|151135 pfam10609, ParA, ParA/MinD ATPase like | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-37
Identities = 50/81 (61%), Positives = 70/81 (86%)
Query: 203 LDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMI 262
LD+L+IDMPPGTGD HLT+AQ +P+ G VIV+TPQD+AL+DV++AI M++K+N+PI+G++
Sbjct: 1 LDYLIIDMPPGTGDEHLTLAQSLPVDGAVIVTTPQDVALLDVRKAIDMFKKLNVPILGIV 60
Query: 263 ENMSYFLASDTGKKYDLFGNG 283
ENMSYF+ D G+K +FG G
Sbjct: 61 ENMSYFVCPDCGEKIYIFGKG 81
|
This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits. Length = 81 |
| >gnl|CDD|30803 COG0455, COG0455, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 1e-17
Identities = 62/258 (24%), Positives = 116/258 (44%), Gaps = 29/258 (11%)
Query: 96 KFVAVASGKGGVGKSTTVVNI-ACALKNKGKNVAILDADVYGPSIPKLLKI-SGKVEISD 153
K +AV SGKGGVGK+T N+ A GK V ++DAD+ ++ LL + S + D
Sbjct: 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHD 62
Query: 154 --KKFLKPKE------NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDF 205
++ G+ ++ S +++ + P ++ L D+
Sbjct: 63 VLAGEASIEDIIYETPQDGLYVLPGGSGLEDLAKL---DPEDLEDVIKELE----ELYDY 115
Query: 206 LLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIG--MIE 263
+LID G T++ + +VIV+TP+ ++ D + I + K+ + ++G ++
Sbjct: 116 ILIDTGAGLSRD--TLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVL 173
Query: 264 NMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNS 323
N T + D+ A +P L+ +PFD +VR G PIV+++ NS
Sbjct: 174 NR----VRSTKEGVDVA----ALLIQVVKQVPVLQVIPFDPEVRRALAEGKPIVLYSPNS 225
Query: 324 ATSEIYQEISDRIQQFFV 341
S+ +E++ ++
Sbjct: 226 KASQAIKELAAKLAGLPE 243
|
Length = 262 |
| >gnl|CDD|131024 TIGR01969, minD_arch, cell division ATPase MinD, archaeal | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 3e-17
Identities = 66/255 (25%), Positives = 115/255 (45%), Gaps = 43/255 (16%)
Query: 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLK-----------IS 146
+ +ASGKGG GK+T N+ AL GK V LDAD+ ++ +L ++
Sbjct: 3 ITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDKPVTLHDVLA 62
Query: 147 GKVEISDKKFLKPKENYGIKIMSMA-SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDF 205
G+ +I D + P +G+K++ SL A + V I+ DF
Sbjct: 63 GEADIKDAIYEGP---FGVKVIPAGVSLEGLRKADPDKLEDVLKEIIDDT--------DF 111
Query: 206 LLIDMPPGTGD---AHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMI 262
LLID P G L A ++ ++V P+ ++ D + + +K+ I+G++
Sbjct: 112 LLIDAPAGLERDAVTALAAADEL-----LLVVNPEISSITDALKTKIVAEKLGTAILGVV 166
Query: 263 ENMSYFLASDTGKKYDLFGNGGARFEAEKI-GIPFLESVPFDMDVRVLSDLGIPIVVHNM 321
N ++ G++ E E I +P L VP D +VR + G P+V++N
Sbjct: 167 LNRVTRDKTELGRE-----------EIETILEVPVLGVVPEDPEVRRAAAFGEPVVIYNP 215
Query: 322 NSATSEIYQEISDRI 336
NS ++ + E++ +
Sbjct: 216 NSPAAQAFMELAAEL 230
|
This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. Length = 251 |
| >gnl|CDD|31343 COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 5e-13
Identities = 73/306 (23%), Positives = 111/306 (36%), Gaps = 88/306 (28%)
Query: 98 VAVASGKGGVGKSTTVVNIACALKNKGK-----------NVAIL-------DADVYGPSI 139
VAVASGKGG GK+T N+A L +K K N+ +L + +V I
Sbjct: 4 VAVASGKGGTGKTTVAANLAVLLGDKYKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEI 63
Query: 140 PKL---------------LKISGKVEISDKKFLKPKENYGIKIMSMA------------- 171
P++ + V K L P G S+
Sbjct: 64 PEIDPEKCIRCGKCAEVCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVI 123
Query: 172 -----SLVDENVAMIW---------RGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGD- 216
S D +I G +V + H D L+ID GTG
Sbjct: 124 GKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKHAKEL-----ADLLIIDSAAGTGCP 178
Query: 217 --AHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTG 274
A L A ++V+ P L D+KRA+ + + IP G++ N
Sbjct: 179 VIASLKGADL-----AILVTEPTPFGLHDLKRALELVEHFGIPT-GIVIN---------- 222
Query: 275 KKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISD 334
+Y+L G+ E+ GIP L +P+D D+ G P V + A E E ++
Sbjct: 223 -RYNL-GDSEIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPFVEPDSKEA--EAILEEAE 278
Query: 335 RIQQFF 340
++++F
Sbjct: 279 KLKEFI 284
|
Length = 284 |
| >gnl|CDD|32719 COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-12
Identities = 60/271 (22%), Positives = 112/271 (41%), Gaps = 56/271 (20%)
Query: 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLK----------- 144
+ + V SGKGGVGK+TT NI AL GK V ++D D+ ++ ++
Sbjct: 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVD 62
Query: 145 -ISGKVEISDKKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQL 203
I G+ ++ + +K K + ++ + D++ + + +++ +
Sbjct: 63 VIEGEATLN-QALIKDKRLENLFLLPASQTRDKDA-------LTPEGVKKVVNELKAMDF 114
Query: 204 DFLLIDMPPG--TGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGM 261
D+++ID P G G + ++V+ P+ ++ D R IIG+
Sbjct: 115 DYIIIDSPAGIEQG-FKNAVY---FADEAIVVTNPEVSSVRDSDR-----------IIGL 159
Query: 262 IENMSYFLASDTGKKYDLFGNGGARFEAEKI---------------GIPFLESVPFDMDV 306
+E+ S K L N R+ E + IP + +P D DV
Sbjct: 160 LESKSRRAEIGEEPKEHLLLN---RYRPEMVKRGEMLSVEDVLEILSIPLIGVIPEDQDV 216
Query: 307 RVLSDLGIPIVVHNMNSATSEIYQEISDRIQ 337
S+ G P V+ + NS + Y++I+ R+
Sbjct: 217 LRASNKGEP-VILDDNSDAGKAYRDIARRLL 246
|
Length = 272 |
| >gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 5e-12
Identities = 66/256 (25%), Positives = 116/256 (45%), Gaps = 34/256 (13%)
Query: 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLK----------- 144
+ + + SGKGGVGK+TT N+ AL GK V ++DAD+ ++ LL
Sbjct: 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVD 61
Query: 145 -ISGKVEISDKKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQL 203
+ G+ + + +K K + ++ + D++ V M L N + +
Sbjct: 62 VVEGECRL-QQALIKDKRLKNLYLLPASQTRDKD--------AVTPEQMKKLVNELKEEF 112
Query: 204 DFLLIDMPPG--TGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGM 261
D+++ID P G +G +A P ++V+TP+ A+ D R I + + I I +
Sbjct: 113 DYVIIDCPAGIESG-FRNAVA---PADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHL 168
Query: 262 IENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNM 321
I N L + KK D+ E + IP + +P D + V ++ G P+V+ N
Sbjct: 169 IVNR---LRPEMVKKGDMLSVDDVL---EILSIPLIGVIPEDEAIIVSTNKGEPVVL-ND 221
Query: 322 NSATSEIYQEISDRIQ 337
S + ++ I+ RI
Sbjct: 222 KSRAGKAFENIARRIL 237
|
This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. Length = 261 |
| >gnl|CDD|31385 COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 62.5 bits (151), Expect = 1e-10
Identities = 55/259 (21%), Positives = 97/259 (37%), Gaps = 21/259 (8%)
Query: 96 KFVAVASGKGGVGKSTTVVNIACAL-KNKGKNVAILDADVYG---------PSIPKLLKI 145
K +AVA+ KGGVGK+TT VN+A AL K GK V ++D D G P + L
Sbjct: 3 KIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSLTSWLGLRPDLEGDLYN 62
Query: 146 SGKVEISDKKFLKPK-ENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLD 204
L G+ ++ + E + + + +L + V D
Sbjct: 63 LLSGLKERPDILDYTVVIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLL-DPVKDDYD 121
Query: 205 FLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALI---DVKRAISMYQKMNIPIIGM 261
+++ID PP G LT+ V+I P+ L L + + K+ + +
Sbjct: 122 YIIIDTPPSLGV--LTLNALAAADHVLIPVQPEFLDLEGLEQLLNTLEDLLKLRRNKLIV 179
Query: 262 IENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNM 321
+ + S T ++ + V + R + G P+ ++
Sbjct: 180 VGILITRFDSRTKLADEVLQELKQLLGDPVLKTKIPRRVAY----REAAAEGKPLYEYDP 235
Query: 322 NSATSEIYQEISDRIQQFF 340
S +E Y E++ + +
Sbjct: 236 KSKAAEEYYELAKELLEEL 254
|
Length = 259 |
| >gnl|CDD|33438 COG3640, CooC, CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 55/269 (20%), Positives = 113/269 (42%), Gaps = 52/269 (19%)
Query: 102 SGKGGVGKST-TVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVE-ISDKK-FLK 158
+GKGGVGK+T + + L G NV ++DAD ++P+ L + ++ + K+ LK
Sbjct: 6 TGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLK 64
Query: 159 P--------------KENYGI-KIMSMASLVDENVAMIWRG-----------PMVQSAIM 192
KEN + + + + ++ ++ G PM + +
Sbjct: 65 KRTGAEPGGPPGEMFKENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPM-NALLR 123
Query: 193 HMLHNVVWGQLDFLLIDMPPGTGDAHLT--IAQKIPLSGVVIVSTPQDLALIDVKRAISM 250
+L +++ + + +++D G H + + L V++V P +L +R +
Sbjct: 124 RLLRHLILNRYEVVIVDTEAGI--EHFGRGTIEGVDL--VIVVVDPSYKSLRTAERIKEL 179
Query: 251 YQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLS 310
+++ I I ++ N K D R AE++G+ L +P+D +V
Sbjct: 180 AEELGIKRIFVVLN-----------KVDE-EEELLRELAEELGLEVLGVIPYDPEVVEAD 227
Query: 311 DLGIPIVVHNMNSATSEIYQEISDRIQQF 339
G P+ N + +EI++R+ +
Sbjct: 228 LKGEPL---NEEPEVLKEIEEIAERLIKL 253
|
Length = 255 |
| >gnl|CDD|48369 cd02040, NifH, NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 63/261 (24%), Positives = 113/261 (43%), Gaps = 50/261 (19%)
Query: 103 GKGGVGKSTTVVNIACALKNKGKNVAILDAD------------VYGPSIPKLLKISGKVE 150
GKGG+GKSTT N++ AL GK V I+ D P++ L+ G+VE
Sbjct: 8 GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVE 67
Query: 151 ISDKKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID- 209
+ + + GIK + + + V RG + ++ L LDF++ D
Sbjct: 68 LELEDVIFEGFG-GIKCVE-SGGPEPGVGCAGRGVITAINLLEEL-GAYEDDLDFVIYDV 124
Query: 210 ----------MPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALI---DVKRAISMYQKM-N 255
MP G AQ+I IV++ + +AL ++ + I Y K
Sbjct: 125 LGDVVCGGFAMPIREG-----KAQEI-----YIVTSGEMMALYAANNICKGILKYAKSGG 174
Query: 256 IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIP 315
+ + G+I N + +T ++ +L F A+++G + VP D V+ G
Sbjct: 175 VRLGGLICN-----SRNTDREDELI----DAF-AKRLGTQMIHFVPRDNVVQRAELRGKT 224
Query: 316 IVVHNMNSATSEIYQEISDRI 336
++ ++ S ++ Y+E++ +I
Sbjct: 225 VIEYDPESKQADEYRELARKI 245
|
Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.. Length = 270 |
| >gnl|CDD|38232 KOG3022, KOG3022, KOG3022, Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Score = 261 bits (669), Expect = 2e-70
Identities = 111/260 (42%), Positives = 164/260 (63%), Gaps = 3/260 (1%)
Query: 85 PPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLK 144
P +Q N VK + V SGKGGVGKST VN+A AL ++GK V +LDAD+ GPSIP+++
Sbjct: 37 PAKQENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMG 96
Query: 145 ISGKVEISDKKFLKP-KENYGIKIMSMASLV-DENVAMIWRGPMVQSAIMHMLHNVVWGQ 202
+ G+V P N +K+MSM L+ + ++IWRGP S I L +V WG+
Sbjct: 97 LEGEVVHQSDNGWIPVVVNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGE 156
Query: 203 LDFLLIDMPPGTGDAHLTIAQKIPLS-GVVIVSTPQDLALIDVKRAISMYQKMNIPIIGM 261
LD+L+ID PPGT D HL++ Q + S G VIV+TPQ++AL DV++ I +K IPI+G+
Sbjct: 157 LDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGV 216
Query: 262 IENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNM 321
+ENMS F+ G ++FG+GG AE++G+P L S+P D + SD G+P V
Sbjct: 217 VENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYP 276
Query: 322 NSATSEIYQEISDRIQQFFV 341
+S SE +++I++++ +
Sbjct: 277 DSPASEAFEDIAEKLVEQLS 296
|
Length = 300 |
| >gnl|CDD|145019 pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 1e-14
Identities = 39/180 (21%), Positives = 81/180 (45%), Gaps = 19/180 (10%)
Query: 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP---SIPKLLKISGKV----E 150
+A+A KGGVGK+T N+A AL +G V ++D D S+ K + + E
Sbjct: 1 IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLE 60
Query: 151 ISDKKFLKPKENYGIKIMSMASLVDENVAMI-----WRGPMVQSAIMHMLHNVVWGQLDF 205
I D + L+ + ++ + + +I + + ++ D+
Sbjct: 61 IVDAQPLQHIAAAIVPSRNL-----DPLLLIPSNLSLANFESELILEGGEEGLIKLAYDY 115
Query: 206 LLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENM 265
++ID PG G LT + +V+ P+ +A++ +R + + +++ + I+G++ N
Sbjct: 116 VIIDGAPGLG--ELTANALVAADILVVPIEPEGVAVLGAQRLLELVERLGLKILGVVLNK 173
|
This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family. Length = 212 |
| >gnl|CDD|130080 TIGR01007, eps_fam, capsular exopolysaccharide family | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 38/189 (20%)
Query: 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLK----------- 144
K + + S K G GKSTT NIA A G ++D D+ + K
Sbjct: 18 KVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNKITGLTNF 77
Query: 145 ISGKVEISDKKFLKPKENYGIKIMSMASLVDENVAMIWRGP-------MVQSAIMHMLHN 197
+SG ++SD I ++ EN+ +I GP ++QS+ L
Sbjct: 78 LSGTTDLSD----------AICDTNI-----ENLFVITSGPVPPNPTELLQSSNFKTLIE 122
Query: 198 VVWGQLDFLLIDMPP-GT-GDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMN 255
+ D+++ID PP GT DA + IA+ ++V+ ++ DV++A ++
Sbjct: 123 TLRKYFDYIIIDTPPIGTVTDAAI-IARAC--DASILVTDAGEIKKRDVQKAKEQLEQTG 179
Query: 256 IPIIGMIEN 264
+G++ N
Sbjct: 180 SNFLGVVLN 188
|
This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes. Length = 204 |
| >gnl|CDD|73214 cd00550, ArsA_ATPase, Oxyanion-translocating ATPase (ArsA) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 33/194 (17%)
Query: 102 SGKGGVGKSTTVVNIACALKNKGKNVAILD-------ADVYGPSIPKL-LKISGK----- 148
GKGGVGK+T A L +GK V ++ +D + K + G
Sbjct: 6 GGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAHSLSDSFNQEFGKGPTPVKGVENLSA 65
Query: 149 VEISDKKFLKPKENYG-----IKIMSMASLVDENVAMIWRGPMVQ--SAIMHMLHNVVWG 201
+EI ++ L +E I+ + ++ + P ++ +A +
Sbjct: 66 MEIDPQEAL--EEYRQEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEA 123
Query: 202 QLDFLLIDMPP-----------GTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISM 250
+ D ++ D P I + +V P+ ++L + +RAI
Sbjct: 124 EYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQE 183
Query: 251 YQKMNIPIIGMIEN 264
K I + +I N
Sbjct: 184 LAKYGIDVDAVIVN 197
|
This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.. Length = 254 |
| >gnl|CDD|73301 cd02038, FleN-like, FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134
+AV SGKGGVGK+ N+A AL GK V +LDAD+
Sbjct: 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADL 38
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.. Length = 139 |
| >gnl|CDD|73302 cd02042, ParA, ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133
+AVA+ KGGVGK+TT VN+A AL +GK V ++D D
Sbjct: 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLD 37
|
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.. Length = 104 |
| >gnl|CDD|73290 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 1e-05
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134
V V +GKGGVGK+T N+A AL +GK V ++D V
Sbjct: 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDDYV 37
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.. Length = 99 |
| >gnl|CDD|134018 PHA02518, PHA02518, ParA-like protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-05
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS 138
K +AV + KGG GK+T N+A L G V ++D D G S
Sbjct: 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSS 43
|
Length = 211 |
| >gnl|CDD|183903 PRK13230, PRK13230, nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 103 GKGGVGKSTTVVNIACALKNKGKNVAILDAD 133
GKGG+GKSTTV NIA AL GK V ++ D
Sbjct: 8 GKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38
|
Length = 279 |
| >gnl|CDD|163238 TIGR03371, cellulose_yhjQ, cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133
K +A+ KGGVGK+T N+A ALK G+ V +D D
Sbjct: 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLD 39
|
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. Length = 246 |
| >gnl|CDD|182756 PRK10818, PRK10818, cell division inhibitor MinD; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV 134
+ + V SGKGGVGK+T+ IA L KGK ++D D+
Sbjct: 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDI 41
|
Length = 270 |
| >gnl|CDD|117696 pfam09140, MipZ, ATPase MipZ | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133
+ V + KGG GKSTT V++A AL G VA +D D
Sbjct: 2 VIVVGNEKGGSGKSTTAVHVAVALLYLGARVATIDLD 38
|
MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation. Length = 261 |
| >gnl|CDD|162286 TIGR01287, nifH, nitrogenase iron protein | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 103 GKGGVGKSTTVVNIACALKNKGKNVAILDAD 133
GKGG+GKSTT NIA AL GK V I+ D
Sbjct: 7 GKGGIGKSTTTQNIAAALAEMGKKVMIVGCD 37
|
This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase. Length = 275 |
| >gnl|CDD|73297 cd02034, CooC, The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH) | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 102 SGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133
+GKGGVGK+T +A L KGK V +DAD
Sbjct: 5 TGKGGVGKTTIAALLARYLAEKGKPVLAIDAD 36
|
CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.. Length = 116 |
| >gnl|CDD|48371 cd02117, NifH_like, This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 103 GKGGVGKSTTVVNIACALKNKGKNVAILDAD 133
GKGG+GKSTT N++ AL GK V + D
Sbjct: 7 GKGGIGKSTTSQNLSAALAEMGKKVLQVGCD 37
|
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.. Length = 212 |
| >gnl|CDD|31539 COG1348, NifH, Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 3e-04
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 103 GKGGVGKSTTVVNIACALKNKGKNVAILDAD 133
GKGG+GKSTT N+A AL GK V I+ D
Sbjct: 8 GKGGIGKSTTSQNLAAALAELGKKVLIVGCD 38
|
Length = 278 |
| >gnl|CDD|183881 PRK13185, chlL, protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 103 GKGGVGKSTTVVNIACALKNKGKNV 127
GKGG+GKSTT N++ A GK V
Sbjct: 9 GKGGIGKSTTSSNLSAAFAKLGKKV 33
|
Length = 270 |
| >gnl|CDD|143913 pfam00142, Fer4_NifH, 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 103 GKGGVGKSTTVVNIACALKNKGKNVAILDAD 133
GKGG+GKSTT N + AL GK V I+ D
Sbjct: 7 GKGGIGKSTTSQNTSAALAEMGKKVLIVGCD 37
|
Length = 269 |
| >gnl|CDD|48379 cd03115, SRP, The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK 148
V + G GVGK+TT +A LK KGK V ++ AD Y P+ + L++ G+
Sbjct: 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGE 52
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.. Length = 173 |
| >gnl|CDD|177011 CHL00072, chlL, photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.001
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 103 GKGGVGKSTTVVNIACALKNKGKNV 127
GKGG+GKSTT NI+ AL +GK V
Sbjct: 7 GKGGIGKSTTSCNISIALARRGKKV 31
|
Length = 290 |
| >gnl|CDD|139909 PRK13849, PRK13849, putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133
K + S KGG GK+T ++ + AL + GK VA+ +AD
Sbjct: 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEAD 39
|
Length = 231 |
| >gnl|CDD|132063 TIGR03018, pepcterm_TyrKin, exopolysaccharide/PEPCTERM locus tyrosine autokinase | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.001
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 79 LTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACAL-KNKGKNVAILDADVYGP 137
L N ++ N N+ + V S G GKS T +N+A +L + K V ++DAD+ P
Sbjct: 22 LLANAFSANRKKNNNL---IMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRP 78
Query: 138 SIPKLLKISGKVEISD 153
S+ + L + + +SD
Sbjct: 79 SLHRTLGLEAEPGLSD 94
|
Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins. Length = 207 |
| >gnl|CDD|130348 TIGR01281, DPOR_bchL, light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.001
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 103 GKGGVGKSTTVVNIACALKNKGKNV 127
GKGG+GKSTT N++ A GK V
Sbjct: 7 GKGGIGKSTTSSNLSVAFAKLGKRV 31
|
The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit. Length = 268 |
| >gnl|CDD|48362 cd02032, Bchl_like, This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.002
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 103 GKGGVGKSTTVVNIACALKNKGKNV 127
GKGG+GKSTT N++ AL +GK V
Sbjct: 7 GKGGIGKSTTSSNLSVALAKRGKKV 31
|
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.. Length = 267 |
| >gnl|CDD|73340 cd03111, CpaE_like, This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.002
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 98 VAVASGKGGVGKSTTVVNIACAL-KNKGKNVAILDAD 133
+A KGGVG +T N+A AL K G+ V ++D D
Sbjct: 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD 38
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.. Length = 106 |
| >gnl|CDD|148565 pfam07015, VirC1, VirC1 protein | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.002
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133
+ + S KGG GK+T ++ + AL + GK VA+ +AD
Sbjct: 2 QLITFCSFKGGAGKTTALMGLCSALASDGKRVALFEAD 39
|
This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA. Length = 231 |
| >gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 62 AQQIIQNIP-------TVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVV 114
A+++++ +P + L + + + + + V G GVGK+TT+
Sbjct: 153 ARELLEKLPERADAEDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLA 212
Query: 115 NIA--CALKNKGKNVAILDADVY 135
+A L++ K VA++ D Y
Sbjct: 213 KLAARFVLEHGNKKVALITTDTY 235
|
Length = 282 |
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
| Identity | Alignment graph | Length | Definition | Probability |
| Target | 341 | hypothetical protein CLIBASIA_03620 [Candidatus Liberib | ||
| PRK11670 | 369 | putative ATPase; Provisional | 100.0 | |
| KOG3022 | 300 | consensus | 100.0 | |
| cd02037 | 169 | MRP-like MRP (Multiple Resistance and pH adaptation) is | 100.0 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is unkow | 100.0 | |
| cd02036 | 179 | MinD Bacterial cell division requires the formation of | 100.0 | |
| cd02117 | 212 | NifH_like This family contains the NifH (iron protein) | 99.97 | |
| pfam01656 | 212 | CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. Thi | 99.97 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superfamily | 99.96 | |
| PRK13705 | 388 | plasmid-partitioning protein SopA; Provisional | 99.87 | |
| PHA02519 | 387 | plasmid partition protein SopA; Reviewed | 99.85 | |
| PRK00090 | 223 | bioD dithiobiotin synthetase; Reviewed | 98.81 | |
| PRK12374 | 231 | putative dithiobiotin synthetase; Provisional | 98.63 | |
| cd03109 | 134 | DTBS Dethiobiotin synthetase (DTBS) is the penultimate | 98.35 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Validated | 98.35 | |
| PRK05632 | 702 | phosphate acetyltransferase; Reviewed | 98.32 | |
| PRK10416 | 499 | cell division protein FtsY; Provisional | 98.31 | |
| TIGR00313 | 502 | cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Co | 98.22 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates the | 98.2 | |
| pfam00448 | 196 | SRP54 SRP54-type protein, GTPase domain. This family in | 98.11 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provisional | 98.05 | |
| PRK05703 | 412 | flhF flagellar biosynthesis regulator FlhF; Validated | 98.03 | |
| PRK00784 | 492 | cobyric acid synthase; Provisional | 98.02 | |
| COG0132 | 223 | BioD Dethiobiotin synthetase [Coenzyme metabolism] | 98.01 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 98.0 | |
| PRK06995 | 404 | flhF flagellar biosynthesis regulator FlhF; Validated | 97.94 | |
| TIGR00064 | 284 | ftsY signal recognition particle-docking protein FtsY; | 97.81 | |
| PRK12727 | 557 | flagellar biosynthesis regulator FlhF; Provisional | 97.69 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracellular | 97.49 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility and s | 97.28 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.24 | |
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) | 97.24 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Translo | 97.16 | |
| COG0857 | 354 | Pta BioD-like N-terminal domain of phosphotransacetylas | 96.87 | |
| PRK06278 | 482 | cobyrinic acid a,c-diamide synthase; Validated | 96.74 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 96.69 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translocatio | 96.67 | |
| TIGR02237 | 223 | recomb_radB DNA repair and recombination protein RadB; | 96.67 | |
| pfam07755 | 302 | DUF1611 Protein of unknown function (DUF1611). This reg | 96.59 | |
| COG1492 | 486 | CobQ Cobyric acid synthase [Coenzyme metabolism] | 94.97 | |
| COG3367 | 339 | Uncharacterized conserved protein [Function unknown] | 93.67 | |
| COG0489 | 265 | Mrp ATPases involved in chromosome partitioning [Cell d | 100.0 | |
| CHL00175 | 279 | minD septum-site determining protein; Validated | 100.0 | |
| TIGR01969 | 258 | minD_arch cell division ATPase MinD; InterPro: IPR01022 | 100.0 | |
| pfam00142 | 269 | Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, | 100.0 | |
| PRK10818 | 270 | cell division inhibitor MinD; Provisional | 100.0 | |
| TIGR01968 | 272 | minD_bact septum site-determining protein MinD; InterPr | 100.0 | |
| cd02040 | 270 | NifH NifH gene encodes component II (iron protein) of n | 100.0 | |
| TIGR03371 | 246 | cellulose_yhjQ cellulose synthase operon protein YhjQ. | 100.0 | |
| COG0455 | 262 | flhG Antiactivator of flagellar biosynthesis FleN, an A | 100.0 | |
| PRK13231 | 264 | nitrogenase reductase-like protein; Reviewed | 100.0 | |
| PRK13230 | 292 | nitrogenase reductase-like protein; Reviewed | 100.0 | |
| COG2894 | 272 | MinD Septum formation inhibitor-activating ATPase [Cell | 100.0 | |
| PRK13232 | 273 | nifH nitrogenase reductase; Reviewed | 100.0 | |
| COG1149 | 284 | MinD superfamily P-loop ATPase containing an inserted f | 100.0 | |
| PRK13233 | 275 | nifH nitrogenase reductase; Reviewed | 99.98 | |
| PRK13235 | 274 | nifH nitrogenase reductase; Reviewed | 99.97 | |
| pfam06564 | 244 | YhjQ YhjQ protein. This family consists of several bact | 99.97 | |
| cd02032 | 267 | Bchl_like This family of proteins contains bchL and chl | 99.97 | |
| PRK13185 | 269 | chlL protochlorophyllide reductase iron-sulfur ATP-bind | 99.95 | |
| PHA02518 | 211 | ParA-like protein; Provisional | 99.95 | |
| CHL00072 | 271 | chlL photochlorophyllide reductase subunit L | 99.94 | |
| PRK13234 | 293 | nifH nitrogenase reductase; Reviewed | 99.94 | |
| PRK13236 | 295 | nitrogenase reductase; Reviewed | 99.93 | |
| COG1192 | 259 | Soj ATPases involved in chromosome partitioning [Cell d | 99.92 | |
| TIGR03453 | 387 | partition_RepA plasmid partitioning protein RepA. Membe | 99.9 | |
| COG3640 | 255 | CooC CO dehydrogenase maturation factor [Cell division | 99.9 | |
| PRK13869 | 405 | plasmid-partitioning protein RepA; Provisional | 99.9 | |
| TIGR01287 | 278 | nifH nitrogenase iron protein; InterPro: IPR005977 The | 99.9 | |
| cd02033 | 329 | BchX Chlorophyllide reductase converts chlorophylls int | 99.88 | |
| PRK10037 | 250 | cell division protein; Provisional | 99.88 | |
| COG1348 | 278 | NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion t | 99.87 | |
| TIGR02016 | 355 | BchX chlorophyllide reductase iron protein subunit X; I | 99.87 | |
| TIGR01281 | 275 | DPOR_bchL light-independent protochlorophyllide reducta | 99.85 | |
| COG4963 | 366 | CpaE Flp pilus assembly protein, ATPase CpaE [Intracell | 99.7 | |
| PRK01077 | 451 | cobyrinic acid a,c-diamide synthase; Validated | 98.34 | |
| COG1797 | 451 | CobB Cobyrinic acid a,c-diamide synthase [Coenzyme meta | 98.24 | |
| PRK13896 | 432 | cobyrinic acid a,c-diamide synthase; Provisional | 98.06 | |
| TIGR00379 | 464 | cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR | 97.31 | |
| PRK03333 | 394 | coaE dephospho-CoA kinase/unknown domain fusion protein | 91.77 | |
| cd02035 | 217 | ArsA ArsA ATPase functionas as an efflux pump located o | 99.95 | |
| cd00550 | 254 | ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This | 99.93 | |
| TIGR03029 | 274 | EpsG chain length determinant protein tyrosine kinase E | 99.92 | |
| PRK09841 | 726 | cryptic autophosphorylating protein tyrosine kinase Etk | 99.91 | |
| TIGR01007 | 207 | eps_fam capsular exopolysaccharide family; InterPro: IP | 99.91 | |
| PRK11519 | 720 | tyrosine kinase; Provisional | 99.9 | |
| pfam02374 | 304 | ArsA_ATPase Anion-transporting ATPase. This Pfam family | 99.72 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins simi | 99.71 | |
| pfam07015 | 231 | VirC1 VirC1 protein. This family consists of several ba | 99.68 | |
| cd02042 | 104 | ParA ParA and ParB of Caulobacter crescentus belong to | 99.66 | |
| PRK13849 | 231 | putative crown gall tumor protein VirC1; Provisional | 99.64 | |
| TIGR00345 | 330 | arsA arsenite-activated ATPase (arsA); InterPro: IPR003 | 99.51 | |
| COG0003 | 322 | ArsA Predicted ATPase involved in chromosome partitioni | 99.5 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a variety | 99.28 | |
| TIGR01005 | 778 | eps_transp_fam exopolysaccharide transport protein fami | 99.23 | |
| KOG2825 | 323 | consensus | 98.68 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and relat | 98.08 | |
| TIGR00347 | 187 | bioD dethiobiotin synthase; InterPro: IPR004472 The enz | 97.99 | |
| cd03114 | 148 | ArgK-like The function of this protein family is unkown | 97.96 | |
| pfam03308 | 267 | ArgK ArgK protein. The ArgK protein acts as an ATPase e | 97.91 | |
| TIGR00750 | 333 | lao LAO/AO transport system ATPase; InterPro: IPR005129 | 97.17 | |
| KOG1532 | 366 | consensus | 96.14 | |
| TIGR00337 | 571 | PyrG CTP synthase; InterPro: IPR004468 CTP synthase is | 95.68 | |
| pfam10609 | 81 | ParA ParA/MinD ATPase like. This family contains ATPase | 99.93 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W) | 96.24 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase family | 94.8 | |
| TIGR03018 | 207 | pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosi | 99.86 | |
| pfam09140 | 261 | MipZ ATPase MipZ. MipZ is an ATPase that forms a comple | 99.82 | |
| cd02034 | 116 | CooC The accessory protein CooC, which contains a nucle | 99.57 | |
| COG3598 | 402 | RepA RecA-family ATPase [DNA replication, recombination | 94.7 | |
| pfam06418 | 275 | CTP_synth_N CTP synthase N-terminus. This family consis | 92.2 | |
| TIGR02945 | 96 | SUF_assoc FeS assembly SUF system protein; InterPro: IP | 99.73 | |
| TIGR03406 | 174 | FeS_long_SufT probable FeS assembly SUF system protein | 99.69 | |
| pfam01883 | 76 | DUF59 Domain of unknown function DUF59. This family inc | 99.64 | |
| COG2151 | 111 | PaaD Predicted metal-sulfur cluster biosynthetic enzyme | 99.62 | |
| TIGR02159 | 152 | PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit; | 99.19 | |
| KOG3381 | 161 | consensus | 93.17 | |
| COG5133 | 181 | Uncharacterized conserved protein [Function unknown] | 90.89 | |
| TIGR00959 | 439 | ffh signal recognition particle protein; InterPro: IPR0 | 98.39 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellular t | 98.21 | |
| PRK13505 | 556 | formate--tetrahydrofolate ligase; Provisional | 98.18 | |
| pfam01268 | 555 | FTHFS Formate--tetrahydrofolate ligase. | 98.14 | |
| PRK13507 | 587 | formate--tetrahydrofolate ligase; Provisional | 98.12 | |
| PRK00771 | 433 | signal recognition particle protein Srp54; Provisional | 98.11 | |
| PRK13886 | 241 | conjugal transfer protein TraL; Provisional | 97.93 | |
| PRK09435 | 325 | arginine/ornithine transport system ATPase; Provisional | 97.79 | |
| COG1341 | 398 | Predicted GTPase or GTP-binding protein [General functi | 97.64 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 97.57 | |
| KOG0780 | 483 | consensus | 97.51 | |
| PRK13768 | 253 | GTPase; Provisional | 97.12 | |
| pfam03029 | 234 | ATP_bind_1 Conserved hypothetical ATP binding protein. | 96.84 | |
| PRK00313 | 332 | lpxK tetraacyldisaccharide 4'-kinase; Provisional | 96.03 | |
| PRK13506 | 577 | formate--tetrahydrofolate ligase; Provisional | 95.98 | |
| TIGR00455 | 187 | apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme | 95.77 | |
| PRK07667 | 190 | uridine kinase; Provisional | 95.73 | |
| cd03116 | 159 | MobB Molybdenum is an essential trace element in the fo | 95.33 | |
| PRK12377 | 248 | putative replication protein; Provisional | 95.23 | |
| pfam03205 | 122 | MobB Molybdopterin guanine dinucleotide synthesis prote | 95.21 | |
| PRK01906 | 339 | tetraacyldisaccharide 4'-kinase; Provisional | 95.06 | |
| PRK06696 | 227 | uridine kinase; Validated | 94.95 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, recombin | 94.84 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexameric h | 94.81 | |
| PRK00652 | 334 | lpxK tetraacyldisaccharide 4'-kinase; Reviewed | 94.8 | |
| PRK09270 | 230 | frcK putative fructose transport system kinase; Reviewe | 94.79 | |
| PRK06749 | 428 | replicative DNA helicase; Provisional | 94.66 | |
| pfam03796 | 186 | DnaB_C DnaB-like helicase C terminal domain. The hexame | 94.66 | |
| KOG0635 | 207 | consensus | 94.61 | |
| pfam05970 | 418 | DUF889 PIF1 helicase. The PIF1 helicase inhibits telome | 94.57 | |
| PRK10751 | 170 | molybdopterin-guanine dinucleotide biosynthesis protein | 94.52 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 94.45 | |
| PRK11545 | 177 | gntK gluconate kinase 1; Provisional | 94.42 | |
| COG2759 | 554 | MIS1 Formyltetrahydrofolate synthetase [Nucleotide tran | 94.31 | |
| PRK09361 | 224 | radB DNA repair and recombination protein RadB; Provisi | 94.28 | |
| ) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=TIGR00176">TIGR00176 | 165 | mobB molybdopterin-guanine dinucleotide biosynthesis pr | 94.25 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares similarity | 94.24 | |
| COG2403 | 449 | Predicted GTPase [General function prediction only] | 94.24 | |
| COG1072 | 283 | CoaA Panthothenate kinase [Coenzyme metabolism] | 94.07 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 93.98 | |
| PRK06526 | 254 | transposase; Provisional | 93.89 | |
| cd02027 | 149 | APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyze | 93.78 | |
| COG0529 | 197 | CysC Adenylylsulfate kinase and related kinases [Inorga | 93.72 | |
| cd02028 | 179 | UMPK_like Uridine monophosphate kinase_like (UMPK_like) | 93.71 | |
| PRK07952 | 242 | DNA replication protein DnaC; Validated | 93.65 | |
| PRK09183 | 258 | transposase/IS protein; Provisional | 93.63 | |
| PRK08181 | 269 | transposase; Validated | 93.51 | |
| TIGR03600 | 421 | phage_DnaB phage replicative helicase, DnaB family, HK0 | 93.46 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family includ | 93.39 | |
| PRK08506 | 473 | replicative DNA helicase; Provisional | 93.29 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'-3' he | 93.25 | |
| pfam00485 | 196 | PRK Phosphoribulokinase / Uridine kinase family. In Ara | 93.23 | |
| pfam02606 | 318 | LpxK Tetraacyldisaccharide-1-P 4'-kinase. This family c | 93.21 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), | 93.19 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 93.1 | |
| pfam01695 | 178 | IstB IstB-like ATP binding protein. This protein contai | 93.09 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport and m | 93.09 | |
| TIGR01618 | 229 | phage_P_loop phage nucleotide-binding protein; InterPro | 93.0 | |
| pfam01583 | 157 | APS_kinase Adenylylsulphate kinase. Enzyme that catalys | 92.92 | |
| PRK05380 | 534 | pyrG CTP synthetase; Validated | 92.91 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This prote | 92.9 | |
| PRK00889 | 175 | adenylylsulfate kinase; Provisional | 92.69 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 92.69 | |
| PRK07004 | 460 | replicative DNA helicase; Provisional | 92.66 | |
| COG1663 | 336 | LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope | 92.51 | |
| PRK05595 | 444 | replicative DNA helicase; Provisional | 92.36 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular activ | 92.28 | |
| PRK09165 | 484 | replicative DNA helicase; Provisional | 92.26 | |
| TIGR01054 | 1843 | rgy reverse gyrase; InterPro: IPR005736 DNA topoisomera | 92.2 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 92.18 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily found | 92.02 | |
| COG0703 | 172 | AroK Shikimate kinase [Amino acid transport and metabol | 91.79 | |
| PRK07263 | 453 | consensus | 91.57 | |
| COG1763 | 161 | MobB Molybdopterin-guanine dinucleotide biosynthesis pr | 91.54 | |
| PRK08082 | 453 | consensus | 91.37 | |
| TIGR01085 | 494 | murE UDP-N-acetylmuramyl-tripeptide synthetases; InterP | 91.35 | |
| pfam08433 | 266 | KTI12 Chromatin associated protein KTI12. This is a fam | 91.31 | |
| PRK03839 | 180 | putative kinase; Provisional | 91.26 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members | 91.26 | |
| PRK05636 | 507 | replicative DNA helicase; Provisional | 91.18 | |
| PRK08116 | 262 | hypothetical protein; Validated | 91.1 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 91.1 | |
| cd02025 | 220 | PanK Pantothenate kinase (PanK) catalyzes the phosphory | 91.05 | |
| COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport and m | 90.98 | |
| KOG1533 | 290 | consensus | 90.96 | |
| PRK05480 | 209 | uridine kinase; Provisional | 90.85 | |
| PRK08006 | 471 | replicative DNA helicase; Provisional | 90.79 | |
| PRK08840 | 464 | replicative DNA helicase; Provisional | 90.78 | |
| PRK05537 | 568 | bifunctional sulfate adenylyltransferase subunit 1/aden | 90.6 | |
| PRK08760 | 476 | replicative DNA helicase; Provisional | 90.58 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 90.48 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signal tra | 90.47 | |
| PRK09302 | 501 | circadian clock protein KaiC; Reviewed | 90.46 | |
| PRK08694 | 468 | consensus | 90.46 | |
| cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phosphoryl t | 90.03 | |
| cd00477 | 524 | FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyz | 98.08 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 92.77 | |
| TIGR00416 | 481 | sms DNA repair protein RadA; InterPro: IPR004504 RadA/S | 90.64 | |
| PRK04220 | 306 | 2-phosphoglycerate kinase; Provisional | 90.61 | |
| PRK10867 | 453 | signal recognition particle protein; Provisional | 98.07 | |
| TIGR01425 | 453 | SRP54_euk signal recognition particle protein SRP54; In | 97.6 | |
| KOG0781 | 587 | consensus | 96.26 | |
| KOG1534 | 273 | consensus | 93.79 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 95.96 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syntheta | 94.01 | |
| pfam00931 | 285 | NB-ARC NB-ARC domain. | 92.71 |
| >PRK11670 putative ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=695.76 Aligned_cols=338 Identities=37% Similarity=0.658 Sum_probs=321.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC Q ss_conf 20289999987203384797643635876556988998999999668784789999999999986067634235503222 Q gi|254780831|r 3 QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTEN 82 (341) Q Consensus 3 ~it~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~ 82 (341) T Consensus 11 ~~l~~~v~~~L~~v~dP~~~~~iv~lg~v~~i~i~~~~v~i~l~l~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~ 90 (369) T PRK11670 11 EALRAMVAGTLANFQHPTLKHNLTTLKALHHVAWMDDTLHIELVMPFVWNSAFEELKEQCSAELLRITGAKAIDWKLSHN 90 (369) T ss_pred HHHHHHHHHHHHCCCCCCCCCCEECCCCEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEC T ss_conf 89999999998077798999880037970169997999999999688898879999999999998578974589999740 Q ss_pred CCCC----CCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC-CCCCCCCCC Q ss_conf 3433----32223465420102446665425789999898723577506988224678765310002456-311233445 Q gi|254780831|r 83 KNPP----QQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK-VEISDKKFL 157 (341) Q Consensus 83 ~~~~----~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~-~~~~~~~~i 157 (341) T Consensus 91 ~~~~~~~~~~~~~~~v~~vIAVaSGKGGVGKSTvavNLA~ALA~~G~kVgllDADi~Gpsip~mlG~~~~~~~~~d~~~i 170 (369) T PRK11670 91 IATLKRVNNQPGVNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQRPTSPDGTHM 170 (369) T ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHCCCCCCCCCCCCCEE T ss_conf 45645556678888868899998589988899999999999996699378982478887650230665456646889663 Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCC Q ss_conf 76632230322333435522100013420247899986752137775899745564442100000002234026742144 Q gi|254780831|r 158 KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQ 237 (341) Q Consensus 158 ~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~ 237 (341) T Consensus 171 ~P~~~~gi~~~S~g~l~~~~~~~iwRgp~~~~al~q~l~~~~wg~lDyLIID~PPGtgDi~Ltl~q~v~~~gavvVTTPq 250 (369) T PRK11670 171 APIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQ 250 (369) T ss_pred CCCCCCCEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCC T ss_conf 76000581253022023766402221301679999987774337888899837998752777887645766079962773 Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE Q ss_conf 31134566677764001221144554420245877886651247765899999847978988279989997502882179 Q gi|254780831|r 238 DLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV 317 (341) Q Consensus 238 ~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v 317 (341) T Consensus 251 ~~Al~Da~k~i~m~~k~~vpilGiVeNMs~~~c~~c~~~~~iFg~gg~e~~a~~~~v~lLG~IP~d~~I~ea~d~G~PvV 330 (369) T PRK11670 251 DIALIDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDRGTPTV 330 (369) T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCEEEECCCCHHHHHHCCCCCCEE T ss_conf 76999999999999854888506886363333689997100136660999999839987997989889996185998569 Q ss_pred EECCCCHHHHHHHHHHHHHHHHH Q ss_conf 97799989999999999999983 Q gi|254780831|r 318 VHNMNSATSEIYQEISDRIQQFF 340 (341) Q Consensus 318 ~~~p~s~~a~~~~~iA~~i~~~l 340 (341) T Consensus 331 ~~~P~S~aA~Af~~iA~~la~~~ 353 (369) T PRK11670 331 VSRPESEFTAIYRQLADRVAAQL 353 (369) T ss_pred EECCCCHHHHHHHHHHHHHHHHH T ss_conf 82899989999999999999999 |
|
| >KOG3022 consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=549.26 Aligned_cols=290 Identities=39% Similarity=0.664 Sum_probs=260.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEE--ECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEE Q ss_conf 47899999999999860676342355--0322234333222346542010244666542578999989872357750698 Q gi|254780831|r 52 AHQLQSLRSNAQQIIQNIPTVKNAVV--TLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAI 129 (341) Q Consensus 52 cp~~~~l~~~i~~~l~~i~gv~~v~V--~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~l 129 (341) T Consensus 2 cpg~~s~~ag~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vgl 81 (300) T KOG3022 2 CPGVLSSEAGKAEECAGCPNVGYCSSSPVQPDPDIPAKQENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGL 81 (300) T ss_pred CCCCCHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE T ss_conf 88756445142101157963365335776767776633233134545899986788776168999999998617971799 Q ss_pred EECCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE Q ss_conf 822467876531000245631123344576-63223032233343552-2100013420247899986752137775899 Q gi|254780831|r 130 LDADVYGPSIPKLLKISGKVEISDKKFLKP-KENYGIKIMSMASLVDE-NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLL 207 (341) Q Consensus 130 iDaDi~~ps~~~~lg~~~~~~~~~~~~i~p-~~~~gi~~~s~g~l~~~-~~~~~~rg~~~~~~l~~~l~~~~w~~~D~li 207 (341) T Consensus 82 LD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLv 161 (300) T KOG3022 82 LDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVVNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLV 161 (300) T ss_pred EEECCCCCCCHHHCCCCCCEEEECCCCCEEEEECCCEEEEEEEEECCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCEEE T ss_conf 75035587705340877744550488741444438767887564328887662654547889999997168877767799 Q ss_pred EECCCCCCCCCCHHHHCCCC-CCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHH Q ss_conf 74556444210000000223-40267421443113456667776400122114455442024587788665124776589 Q gi|254780831|r 208 IDMPPGTGDAHLTIAQKIPL-SGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGAR 286 (341) Q Consensus 208 iD~ppG~gd~~lsl~~~~~~-~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~ 286 (341) T Consensus 162 iDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~ 241 (300) T KOG3022 162 IDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGE 241 (300) T ss_pred EECCCCCCHHHHHEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEECCCCCHH T ss_conf 95899987014310000445573499817205566888865026664598568889625553078878755333676289 Q ss_pred HHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHC Q ss_conf 9999847978988279989997502882179977999899999999999999839 Q gi|254780831|r 287 FEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQFFV 341 (341) Q Consensus 287 ~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~~l~ 341 (341) T Consensus 242 ~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~~~p~s~~~~af~~i~~~i~~~~~ 296 (300) T KOG3022 242 RLAEELGLPLLGSLPLDPLIAESSDSGVPFVEEYPDSPASEAFEDIAEKLVEQLS 296 (300) T ss_pred HHHHHCCCCEEEECCCCHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHC T ss_conf 9998729975750678879997534898347607995699999999999998612 |
|
| >cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=415.11 Aligned_cols=169 Identities=59% Similarity=1.056 Sum_probs=165.7 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341) T Consensus 1 vi~v~s~kggvgkst~~~~la~~l~~~g~~v~~~d~di~gpsip~~---------------------------------- 46 (169) T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKM---------------------------------- 46 (169) T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEE---------------------------------- T ss_conf 9899749998819999999999999879978999713799975501---------------------------------- Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC Q ss_conf 21000134202478999867521377758997455644421000000022340267421443113456667776400122 Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNI 256 (341) Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~ 256 (341) T Consensus 47 -----~rGp~~~~~i~q~l~~~~w~~lDyLIID~PPGtgD~~lt~~~~~~~d~~IvVTTP~~~s~~Da~r~i~~~~~~~i 121 (169) T cd02037 47 -----WRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNI 121 (169) T ss_pred -----EECHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCC T ss_conf -----204738999999998525466788999689998707787987505674799946958899999999999997599 Q ss_pred CHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCH Q ss_conf 114455442024587788665124776589999984797898827998 Q gi|254780831|r 257 PIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDM 304 (341) Q Consensus 257 ~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~ 304 (341) T Consensus 122 ~i~GvVeNMs~~~c~~c~~~~~ifg~~~~~~la~~~~i~~Lg~IP~dp 169 (169) T cd02037 122 PILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169) T ss_pred CEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCC T ss_conf 707999879666079999735278884499999995999898728999 |
Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. |
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=282.49 Aligned_cols=178 Identities=28% Similarity=0.350 Sum_probs=137.5 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC Q ss_conf 10244666542578999989872357750698822467876531000245631123344576632230322333435522 Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDEN 177 (341) Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~~ 177 (341) T Consensus 2 IaV~SgKGGVGKTT~a~nLA~~l----~~V~liD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g------ 71 (179) T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCG------ 71 (179) T ss_pred EEEEECCCCCHHHHHHHHHHHHC----CCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCCEECHHHHHHCC------ T ss_conf 89995899860999999999974----28719994189985777718765632122304653351506653235------ Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC Q ss_conf 10001342024789998675213777589974556444210000000223402674214431134566677764001221 Q gi|254780831|r 178 VAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIP 257 (341) Q Consensus 178 ~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~ 257 (341) T Consensus 72 ----~~~~~~~~~~~~~~~~~~~~~~D~viiD~Ppg~~~~~~~al--~~ad~~iiVttP~~~si~d~~r~i~l~~~~~~~ 145 (179) T cd03110 72 ----LCGKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASL--TGADAALLVTEPTPSGLHDLERAVELVRHFGIP 145 (179) T ss_pred ----CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHH--HCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCC T ss_conf ----17688999999999986443799899818999757899999--739949998199478999999999999982997 Q ss_pred HHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECC Q ss_conf 14455442024587788665124776589999984797898827 Q gi|254780831|r 258 IIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVP 301 (341) Q Consensus 258 i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP 301 (341) T Consensus 146 ~-gvV~Nr~~~-~~~--------~~~~i~~~~~~~~vp~LG~iP 179 (179) T cd03110 146 V-GVVINKYDL-NDE--------IAEEIEDYCEEEGIPILGKIP 179 (179) T ss_pred E-EEEEECCCC-CCC--------CHHHHHHHHHHHCCCEEEECC T ss_conf 8-999968878-876--------348999999980999898387 |
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=276.18 Aligned_cols=179 Identities=32% Similarity=0.516 Sum_probs=150.1 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341) T Consensus 1 iIav~s~KGGVGKTT~a~NLA~aLa~~g~~vllvD~D~~~~~l~~~~~~~~~~~~~------------------------ 56 (179) T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYT------------------------ 56 (179) T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCCH------------------------ T ss_conf 98997399987099999999999997799189995899999836661765566531------------------------ Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCC Q ss_conf 21000134202478999867521377758997455644421000000022340267421443113456667776400122 Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNI 256 (341) Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~ 256 (341) T Consensus 57 ------------------~~~vl~g--D~viiD~ppg~~~~~~~~--l~~ad~vlvv~~p~~~sl~~~~~~~~~~~~~~~ 114 (179) T cd02036 57 ------------------LHDVLAG--DYILIDSPAGIERGFITA--IAPADEALLVTTPEISSLRDADRVKGLLEALGI 114 (179) T ss_pred ------------------HHCCCCC--CEEEEECCCCCCHHHHHH--HHHCCCCEECCCCCHHHHHHHHHHHHHHHHCCC T ss_conf ------------------3112669--999997999988899999--984681256378858899999999999982599 Q ss_pred CHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCCHHHHHH Q ss_conf 1144554420245877886651247765899999847978988279989997502882179977999899999 Q gi|254780831|r 257 PIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIY 329 (341) Q Consensus 257 ~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~ 329 (341) T Consensus 115 ~~~~vv~Nr~~---~~~~-----~~~~~~~~~~~~l~~~vlg~IP~d~~v~eA~~~g~Pv~~~~P~s~aA~ay 179 (179) T cd02036 115 KVVGVIVNRVR---PDMV-----EGGDMVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAAQAY 179 (179) T ss_pred CEEEEEECCCC---CCCC-----CHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCEEEEECCCCHHHHCC T ss_conf 64699984546---7666-----36779999998559967988779889999876795389879999566309 |
The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. |
| >cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=229.79 Aligned_cols=190 Identities=27% Similarity=0.291 Sum_probs=132.3 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC---------CC---CCCCCCCC Q ss_conf 2010244666542578999989872357750698822467876531000245631123---------34---45766322 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD---------KK---FLKPKENY 163 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---------~~---~i~p~~~~ 163 (341) T Consensus 1 ~~iaiy-GKGGVGKTTts~NLaaaLA~~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~~ 79 (212) T cd02117 1 RQIAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGFG 79 (212) T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCC T ss_conf 959998-8983568778999999999869969999038998733031199778719999875278664456678996688 Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHH--HHCCCCCCEEEEECCCCCCCCCCH-HH---HCCCCCCEEEEECCC Q ss_conf 303223334355221000134202478999867--521377758997455644421000-00---002234026742144 Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLH--NVVWGQLDFLLIDMPPGTGDAHLT-IA---QKIPLSGVVIVSTPQ 237 (341) Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~--~~~w~~~D~liiD~ppG~gd~~ls-l~---~~~~~~~~iiVttP~ 237 (341) T Consensus 80 gv~~veag-gp~~g~~~ag~~i--~~~~-~ll~~~~~~~~~~D~IliD~---lGdvv~~gf~~pi~~~~Ad~vlIvtt~E 152 (212) T cd02117 80 GVKCVESG-GPEPGVGCAGRGV--ITAV-NLLEKEGFAEDDLDVVLYDV---LGDVVCGGFAMPIREGKADEIYIVTSGE 152 (212) T ss_pred CEEEEECC-CCCCCCCCCCCHH--HHHH-HHHHHHHHHCCCCCEEEEEC---CCCCEECCCCCCCCCCCCCEEEEECCCC T ss_conf 70899889-9776765454117--8899-99997410025799999965---8854035633432116688899980693 Q ss_pred CCHHHHH---HHHHHHHHCC-CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCC Q ss_conf 3113456---6677764001-2211445544202458778866512477658999998479789882799 Q gi|254780831|r 238 DLALIDV---KRAISMYQKM-NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFD 303 (341) Q Consensus 238 ~~s~~da---~r~~~~~~~~-~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d 303 (341) T Consensus 153 ~~Al~~a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~----------~~~~~i~~f~~~~g~~vl~~IP~d 212 (212) T cd02117 153 FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----------RETELIDAFAERLGTQVIHFVPRD 212 (212) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC----------CHHHHHHHHHHHHCCEEEEECCCC T ss_conf 578898899999999997367981489998467888----------649999999998399189974899 |
Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. |
| >pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=227.92 Aligned_cols=194 Identities=23% Similarity=0.368 Sum_probs=131.1 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCC--------------CCCC-CCC Q ss_conf 1024466654257899998987235775069882246787653100024563112334--------------4576-632 Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKK--------------FLKP-KEN 162 (341) Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~--------------~i~p-~~~ 162 (341) T Consensus 1 Iav~s~KGGVGKTT~a~nLA~~la~~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212) T pfam01656 1 IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRNL 80 (212) T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCCC T ss_conf 98976899806999999999999978997899838999962588658764344444410101121002456422245555 Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHH Q ss_conf 23032233343552210001342024789998675213777589974556444210000000223402674214431134 Q gi|254780831|r 163 YGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALI 242 (341) Q Consensus 163 ~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~ 242 (341) T Consensus 81 ~~l~l~p~~~~~~~--------~~~~~~~~~~~~~~~~~~~D~viiD~pp~~~~~--~~~al~~ad~vivv~~p~~~sl~ 150 (212) T pfam01656 81 DPLLLIPSNLSLAN--------FESELILEGGEEGLIKLAYDYVIIDGAPGLGEL--TANALVAADILVVPIEPEGVAVL 150 (212) T ss_pred CCEEEECCCHHHHH--------HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH--HHHHHHCCCEEEEEECCCHHHHH T ss_conf 87465335015667--------777779999998766604998999479975599--99999839989999489769999 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCC---EEEECCCCHHHHH Q ss_conf 56667776400122114455442024587788665124776589999984797---8988279989997 Q gi|254780831|r 243 DVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIP---FLESVPFDMDVRV 308 (341) Q Consensus 243 da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~---~lg~IP~d~~i~~ 308 (341) T Consensus 151 ~~~~l~~~~~~l~~~~~gvV~N~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Ip~d~~v~~ 212 (212) T pfam01656 151 GAQRLLELVERLGLKILGVVLNKV-----DRGDERHL--DKEIEALERKTGIPVLLLLGVIPRDLALSE 212 (212) T ss_pred HHHHHHHHHHHCCCCCEEEEECCC-----CCCCHHHH--HHHHHHHHHHHCCCCEEEECCCCCCCCCCC T ss_conf 999999999985996229999148-----89983663--078999999978997514041168776687 |
This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family. |
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-30 Score=218.16 Aligned_cols=135 Identities=27% Similarity=0.459 Sum_probs=105.8 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341) T Consensus 1 vi~v~sgKgGvGkt~~~~nLa~~la~~G~~vll~D~D~g~an~~------------------------------------ 44 (139) T cd02038 1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------ 44 (139) T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC------------------------------------ T ss_conf 98996499998399999999999997899699998989996579------------------------------------ Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHH-HHCCC Q ss_conf 21000134202478999867521377758997455644421000000022340267421443113456667776-40012 Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISM-YQKMN 255 (341) Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~-~~~~~ 255 (341) T Consensus 45 --------------------------~D~viiD~~aG~~~~~~~~~--~~ad~~lvV~tpeptSi~DAYalIK~l~~~~~ 96 (139) T cd02038 45 --------------------------YDYIIIDTGAGISDNVLDFF--LAADEVIVVTTPEPTSITDAYALIKKLAKQLR 96 (139) T ss_pred --------------------------CCEEEEECCCCCCHHHHHHH--HHCCCEEEEECCCHHHHHHHHHHHHHHHHHCC T ss_conf --------------------------99999948999877899999--95895799958970679999999999999639 Q ss_pred CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHH---HCCCEEEECC Q ss_conf 211445544202458778866512477658999998---4797898827 Q gi|254780831|r 256 IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEK---IGIPFLESVP 301 (341) Q Consensus 256 ~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~---~~i~~lg~IP 301 (341) T Consensus 97 ~~~~~lvvN~v~----s~~ea~~~~~--~l~~v~~kfL~v~l~~lG~IP 139 (139) T cd02038 97 VLNFRVVVNRAE----SPKEGKKVFK--RLSNVSNRFLGLSLDYLGFIP 139 (139) T ss_pred CCCEEEEEECCC----CHHHHHHHHH--HHHHHHHHHCCCCCCCCEECC T ss_conf 997599995689----9999999999--999999998099831071485 |
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >PRK13705 plasmid-partitioning protein SopA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=164.00 Aligned_cols=213 Identities=19% Similarity=0.217 Sum_probs=130.0 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCCCCEECCCCCCCCCCCC---------------CCCC Q ss_conf 201024466654257899998987235775069882-246787653100024563112334---------------4576 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILD-ADVYGPSIPKLLKISGKVEISDKK---------------FLKP 159 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liD-aDi~~ps~~~~lg~~~~~~~~~~~---------------~i~p 159 (341) T Consensus 107 ~VIAVaNqKGGvGKTTTavnLA~~LAl~G~RVLlID~LDPQa-nlT~~~G~~pd~~~~~~~tl~~~~~~~~~~~~~~I~~ 185 (388) T PRK13705 107 PVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQG-TASMYHGWVPDLHIHAEDTLLPFYLGEKDDAAYAIKP 185 (388) T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHEEEC T ss_conf 289995278885599999999999997799089995878886-5643568888766564430247761466655450434 Q ss_pred CCCCCEEECCCCC-CCCCCCCCCC---CC--CCH-HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEE Q ss_conf 6322303223334-3552210001---34--202-478999867521377758997455644421000000022340267 Q gi|254780831|r 160 KENYGIKIMSMAS-LVDENVAMIW---RG--PMV-QSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVI 232 (341) Q Consensus 160 ~~~~gi~~~s~g~-l~~~~~~~~~---rg--~~~-~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~ii 232 (341) T Consensus 186 T~~~gLDlIPs~l~L~~~E~el~~~~~~~~~~~~~~~~Lr~aL~~v-~d~YD~IlIDcPPsLG--~LTiNAL~AAd~vlI 262 (388) T PRK13705 186 TCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETV-AHDYDVIVIDSAPNLG--IGTINVVCAADVLIV 262 (388) T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HHCCCEEEEECCCCHH--HHHHHHHHHHCEEEE T ss_conf 7889979970898999999999775531232225899999999862-5039999995897177--999999998085486 Q ss_pred EECCCCCHHHHHHHHHHHHHCCCC--CHHHHHHHHCCCCCCCCCCEEECCCCCHHHH-H----HHHHCCCEE-EECCCCH Q ss_conf 421443113456667776400122--1144554420245877886651247765899-9----998479789-8827998 Q gi|254780831|r 233 VSTPQDLALIDVKRAISMYQKMNI--PIIGMIENMSYFLASDTGKKYDLFGNGGARF-E----AEKIGIPFL-ESVPFDM 304 (341) Q Consensus 233 VttP~~~s~~da~r~~~~~~~~~~--~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~-~----a~~~~i~~l-g~IP~d~ 304 (341) T Consensus 263 Pv~p~~lD~~S~~qFl~m~~~l~~~~~~~g~~~~~r~L~Tr-----~e~-~d~~q~~~m~~~lr~~fg~~vl~~~i~~S~ 336 (388) T PRK13705 263 PTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTK-----YSN-ANGSQSPWMEEQIRDAWGSMVLKNVVRETD 336 (388) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC-----CCC-CCCCHHHHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 78940776999999999999999998751777634899872-----589-998789999999999976777636225789 Q ss_pred HHHHHHCCCCCEEE Q ss_conf 99975028821799 Q gi|254780831|r 305 DVRVLSDLGIPIVV 318 (341) Q Consensus 305 ~i~~a~~~g~P~v~ 318 (341) T Consensus 337 aI~~A~~~~~TlyE 350 (388) T PRK13705 337 EVGKGQIRMRTVFE 350 (388) T ss_pred HHHHHHHHCCCCEE T ss_conf 99872652073010 |
|
| >PHA02519 plasmid partition protein SopA; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=162.02 Aligned_cols=211 Identities=20% Similarity=0.266 Sum_probs=128.7 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE-CCCCCCCCCCEECCCCCCCCCCCC---------------CCC Q ss_conf 4201024466654257899998987235775069882-246787653100024563112334---------------457 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILD-ADVYGPSIPKLLKISGKVEISDKK---------------FLK 158 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liD-aDi~~ps~~~~lg~~~~~~~~~~~---------------~i~ 158 (341) T Consensus 106 ~~VIAVaN~KGGVGKTTTavnLA~~LAl~G~RVL~ID~lDPQa-slS~~~G~~pd~~~~~~~t~~~~~~~~~~~~~~~I~ 184 (387) T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQG-TASMYHGYVPDLHIHADDTLLPFYLGERDNAEYAIK 184 (387) T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHEE T ss_conf 5289986168877699999999999997699689995988520-043145888876646554135776157555776033 Q ss_pred CCCCCCEEECCCCC-CCCCCCCC-----CCCCCCH-HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEE Q ss_conf 66322303223334-35522100-----0134202-47899986752137775899745564442100000002234026 Q gi|254780831|r 159 PKENYGIKIMSMAS-LVDENVAM-----IWRGPMV-QSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVV 231 (341) Q Consensus 159 p~~~~gi~~~s~g~-l~~~~~~~-----~~rg~~~-~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~i 231 (341) T Consensus 185 ~T~~~gLDlIPa~l~L~~~E~el~~~~~~~~~~~~~~~~L~~aL~~v-~d~YDvVlIDcPPsLG--~LTlNAL~AAd~vl 261 (387) T PHA02519 185 PTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESV-WDNYDIIVIDSAPNLG--TGTINVVCAADVIV 261 (387) T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCCHH--HHHHHHHHHCCEEE T ss_conf 68989967974888999999999878743142234899999998752-3469989997997368--99999999829658 Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHH------HCCCCCCCCCCEEECCCCCHHHHH----HHHHCCCEE-EEC Q ss_conf 742144311345666777640012211445544------202458778866512477658999----998479789-882 Q gi|254780831|r 232 IVSTPQDLALIDVKRAISMYQKMNIPIIGMIEN------MSYFLASDTGKKYDLFGNGGARFE----AEKIGIPFL-ESV 300 (341) Q Consensus 232 iVttP~~~s~~da~r~~~~~~~~~~~i~GiV~N------Ms~~~~~~~~~~~~~fg~~~~~~~----a~~~~i~~l-g~I 300 (341) T Consensus 262 IPv~p~~ld~~S~~qFl~m~~~l----~~~v~~~g~~~~~r~LiT-----r~ep~d~~q~~~m~~~lR~~fg~~vl~~~i 332 (387) T PHA02519 262 VATPAELFDYVSVLQFFTMLLDL----LATVDLGGFEPVVRLLLT-----KYSLTVGNQSRWMEEQIRNTWGSMVLRQVV 332 (387) T ss_pred ECCCCCHHHHHHHHHHHHHHHHH----HHHHHHCCCCCCEEEEEE-----CCCCCCCCHHHHHHHHHHHHHHHHHHHCCC T ss_conf 68896387799999999999999----999862378750468775-----358999888999999999998788864623 Q ss_pred CCCHHHHHHHCCCCCEEE Q ss_conf 799899975028821799 Q gi|254780831|r 301 PFDMDVRVLSDLGIPIVV 318 (341) Q Consensus 301 P~d~~i~~a~~~g~P~v~ 318 (341) T Consensus 333 ~~S~aI~~A~~~~qTlYE 350 (387) T PHA02519 333 RVTDEVGKGQIKMRTVFE 350 (387) T ss_pred HHHHHHHHHHHHCCCCEE T ss_conf 587999973651274121 |
|
| >PRK00090 bioD dithiobiotin synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-08 Score=75.38 Aligned_cols=188 Identities=19% Similarity=0.210 Sum_probs=100.9 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC----------CCEECCCCCCCCCCCCCCCCCCCCCEE Q ss_conf 0102446665425789999898723577506988224678765----------310002456311233445766322303 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI----------PKLLKISGKVEISDKKFLKPKENYGIK 166 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~----------~~~lg~~~~~~~~~~~~i~p~~~~gi~ 166 (341) T Consensus 1 ~ifI~GT~T~vGKT~vt~~L~~~l~~~G~~v~~~KPv~tG~~~~~~~~Da~~~~~~~~~~~~-----~~~~~p~~~~~-- 73 (223) T PRK00090 1 VLFVTGTDTGVGKTVVTAALAQALREQGYRVAGYKPVQSGCDGGLRNGDALALQRLSGLPLD-----YELVNPYRFEE-- 73 (223) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECEEEECCCCCCCCHHHHHHHHHHCCCCC-----HHHHCCCCCCC-- T ss_conf 98998689997699999999999997899489975120489889972799999998089998-----67605402588-- Q ss_pred ECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCCEEEEECCCCCC---CCCCHHHHCCCC--CCEEEEECCCCCH Q ss_conf 223334355221000134202-4789998675213777589974556444---210000000223--4026742144311 Q gi|254780831|r 167 IMSMASLVDENVAMIWRGPMV-QSAIMHMLHNVVWGQLDFLLIDMPPGTG---DAHLTIAQKIPL--SGVVIVSTPQDLA 240 (341) Q Consensus 167 ~~s~g~l~~~~~~~~~rg~~~-~~~l~~~l~~~~w~~~D~liiD~ppG~g---d~~lsl~~~~~~--~~~iiVttP~~~s 240 (341) T Consensus 74 p~s------P~~aa~~~g~~i~~~~i~~~~~~l~-~~~d~vlvEGaGGl~~Pl~~~~~~~Dla~~l~~pvILV~~~~lG~ 146 (223) T PRK00090 74 PLS------PHLAARLEGVTIDLEKISAALRELA-QQADLVLVEGAGGLLVPLTDDLTLADLAAQLQLPVILVVGVKLGC 146 (223) T ss_pred CCC------HHHHHHHHCCCCCHHHHHHHHHHHH-HHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCH T ss_conf 989------8999999098468999999999998-318989994688655675678788999999688989997698880 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHH Q ss_conf 345666777640012211445544202458778866512477658999998479789882799899 Q gi|254780831|r 241 LIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDV 306 (341) Q Consensus 241 ~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i 306 (341) T Consensus 147 inhtllt~eal~~~gl~v~GvI~N~----~~~---~~~~~-~~~~~~l~~~~gvPvLG~iP~~~~~ 204 (223) T PRK00090 147 INHTLLTLEAIRARGLPLAGWVANG----VPP---EGLRH-AENLATLAELLPAPLLGRLPYLAEL 204 (223) T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEC----CCC---CHHHH-HHHHHHHHHHCCCCEEEECCCCCCC T ss_conf 9999998999996899489999968----588---36677-7689999985499889975899998 |
|
| >PRK12374 putative dithiobiotin synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.2e-07 Score=69.25 Aligned_cols=181 Identities=17% Similarity=0.188 Sum_probs=102.2 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCC---CC-------------CCCCCCC Q ss_conf 2010244666542578999989872357750698822467876531000245631---12-------------3344576 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVE---IS-------------DKKFLKP 159 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~---~~-------------~~~~i~p 159 (341) T Consensus 3 k~~FITGTDTdVGKT~vsaaL~~~l~~~G~~v~~~KPV--------asG~~~~~~g~~~~Da~~l~~~~~~~~~~~~vnP 74 (231) T PRK12374 3 KRFFITGTDTSVGKTVVSRALLQALASQGKSVAGYKPV--------AKGSKETPEGLRNKDALVLQSVSTIELPYEAVNP 74 (231) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE--------ECCCCCCCCCCCHHHHHHHHHHHCCCCCHHHCCC T ss_conf 64799878999539999999999999789948888568--------8399668998724789999987378999887197 Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCCEEEEECCCCCC----CCC--CHHHHCCCCCCEEE Q ss_conf 6322303223334355221000134202-4789998675213777589974556444----210--00000022340267 Q gi|254780831|r 160 KENYGIKIMSMASLVDENVAMIWRGPMV-QSAIMHMLHNVVWGQLDFLLIDMPPGTG----DAH--LTIAQKIPLSGVVI 232 (341) Q Consensus 160 ~~~~gi~~~s~g~l~~~~~~~~~rg~~~-~~~l~~~l~~~~w~~~D~liiD~ppG~g----d~~--lsl~~~~~~~~~ii 232 (341) T Consensus 75 ~~-----------~~~~~aa~-~~~~~id~~~i~~~~~~l~-~~~d~vlVEGAGG~~vPl~~~~~~~Dl~~~l~-lPVIL 140 (231) T PRK12374 75 IA-----------LSEEESSV-AHSCPINYTLISNGLANLT-DKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQ-LPVLM 140 (231) T ss_pred CC-----------CCCCCCCH-HHCCCCCHHHHHHHHHHHH-HHCCEEEEECCCCEEECCCCCCHHHHHHHHCC-CCEEE T ss_conf 66-----------88665774-4548578999999999988-55797999779862130476514999999839-99999 Q ss_pred EECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHH Q ss_conf 42144311345666777640012211445544202458778866512477658999998479789882799899 Q gi|254780831|r 233 VSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDV 306 (341) Q Consensus 233 VttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i 306 (341) T Consensus 141 V~~~~LG~INHtLLT~eal~~~gl~l~G~I~N~---~~p~~~~----~-~e~i~~L~~~~~~P~LG~iP~l~~~ 206 (231) T PRK12374 141 VVGIQEGCINHALLTAQAIANDGLPLIGWVANR---INPGLAH----Y-AEIIDVLGKKLPAPLIGELPYLPRA 206 (231) T ss_pred EECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE---ECCCHHH----H-HHHHHHHHHHCCCCEEEECCCCCCC T ss_conf 988986848899999999997899579999983---6797046----7-8899999985599978868999998 |
|
| >cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-06 Score=62.54 Aligned_cols=125 Identities=23% Similarity=0.275 Sum_probs=79.2 Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCCCC Q ss_conf 65425789999898723577506988224678765310002456311233445766322303223--3343552210001 Q gi|254780831|r 105 GGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMS--MASLVDENVAMIW 182 (341) Q Consensus 105 GGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s--~g~l~~~~~~~~~ 182 (341) T Consensus 8 T~VGKT~vt~~l~~~l~~~G~~v~~~KP---------------------------v~t~D~vlVEGaGG~~vPl~~---- 56 (134) T cd03109 8 TDIGKTVATAILARALKEKGYRVAPLKP---------------------------VQTYDFVLVEGAGGLCVPLKE---- 56 (134) T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECH---------------------------HHCCCEEEEECCCCEEECCCC---- T ss_conf 8876899999999999977991778756---------------------------672798999889774600389---- Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 34202478999867521377758997455644421000000022340267421443113456667776400122114455 Q gi|254780831|r 183 RGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMI 262 (341) Q Consensus 183 rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV 262 (341) T Consensus 57 ---------------------~~~~~Dl-----------~~~l~-~pvIlV~~~~LG~INhtlLt~eal~~~gi~v~G~i 103 (134) T cd03109 57 ---------------------DFTNADV-----------AKELN-LPAILVTSAGLGSINHAFLTIEAARIKGIILNGVL 103 (134) T ss_pred ---------------------CCCHHHH-----------HHHHC-CCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE T ss_conf ---------------------8629999-----------99709-99899977887858999999999998799288999 Q ss_pred HHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECC Q ss_conf 442024587788665124776589999984797898827 Q gi|254780831|r 263 ENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVP 301 (341) Q Consensus 263 ~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP 301 (341) T Consensus 104 ~N~-~--~~~-~---~~-~~~N~~~I~~~t~vPvLG~vP 134 (134) T cd03109 104 GNV-I--VEK-E---GL-ATLNVETIERLTGIPVLGIVP 134 (134) T ss_pred EEC-C--CCC-C---HH-HHHHHHHHHHHHCCCEEEECC T ss_conf 946-7--997-1---06-787599999974999778288 |
The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors. |
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.3e-06 Score=58.70 Aligned_cols=169 Identities=18% Similarity=0.290 Sum_probs=91.6 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341) T Consensus 76 ~vI~lv-G~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQL------k~~a~-------~l~v~~~-----~~ 136 (270) T PRK06731 76 QTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL------QDYVK-------TIGFEVI-----AV 136 (270) T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHH------HHHHH-------HHCCCEE-----CC T ss_conf 189998-88989889999999999986799089998388888899999------99999-------8199535-----45 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC-----CHHHHCCCCCCEEEEECCCCCHHHHHHHHH Q ss_conf 2210001342024789998675213777589974556444--210-----000000223402674214431134566677 Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH-----LTIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341) Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~-----lsl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341) T Consensus 137 ~~~~------~~~~~~~~~~~~---~~~DvilIDTA-GR~~~d~~lm~el~~~~~~~~p~~~~Lvlda-s~~~~~~~~~~ 205 (270) T PRK06731 137 RDEA------AMTRALTYFKEE---ARVDYILIDTA-GKNYRASETVEEMIETMGQVEPDYICLTLSA-SMKSKDMIEII 205 (270) T ss_pred CCHH------HHHHHHHHHHHH---CCCCEEEEECC-CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEC-CCCHHHHHHHH T ss_conf 8878------999999999997---69999999799-9871469999999998606389879999868-77769999999 Q ss_pred HHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEE--E---CCCCHHH Q ss_conf 76400122114455442024587788665124776589999984797898--8---2799899 Q gi|254780831|r 249 SMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLE--S---VPFDMDV 306 (341) Q Consensus 249 ~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg--~---IP~d~~i 306 (341) T Consensus 206 ~~f~~--~~i~gvIlTK-------lD~ta~---gG~als~~~~~~~PI~fig~Ge~VpeDi~~ 256 (270) T PRK06731 206 TNFKD--IHIDGIVFTK-------FDETAS---SGELLKIPAVSSAPIVLMTDGQDVKKNIHI 256 (270) T ss_pred HHHCC--CCCCEEEEEC-------CCCCCC---CCHHHHHHHHHCCCEEEEECCCCCHHHHHC T ss_conf 98077--9998899965-------358997---729999999988597999459997021413 |
|
| >PRK05632 phosphate acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.6e-06 Score=60.38 Aligned_cols=196 Identities=18% Similarity=0.250 Sum_probs=96.2 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCC-CCCCCCCCCCCCEEECCCCCCC Q ss_conf 201024466654257899998987235775069882246787653100024563112-3344576632230322333435 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEIS-DKKFLKPKENYGIKIMSMASLV 174 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~-~~~~i~p~~~~gi~~~s~g~l~ 174 (341) T Consensus 2 rsIyIa~te~~sGKTsVaLGL~~aL~r~g~KVGfFKPI~q~~~~---~~~D~~i~Li~~~~~L~~~~~i~~s~a--~~ll 76 (702) T PRK05632 2 RTIYLAPTGTGVGLTSVSLGLVRALERKGVKVGFFKPIAQPRPD---DGPDRSTELLRARLGLPYEEPLSLSYA--EELL 76 (702) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC---CCCCCHHHHHHHHCCCCCCCCCCHHHH--HHHH T ss_conf 36999627999879999999999998368847998335547888---997607999998559895336078899--9998 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC------CCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHH Q ss_conf 52210001342024789998675213777589974556444------210000000223402674214431134566677 Q gi|254780831|r 175 DENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG------DAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341) Q Consensus 175 ~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g------d~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341) T Consensus 77 ~~g~~D----~LlE~IV~~-y~~l~-~~~DvVLVEGs~~~~~~~~~~~lNa~IAknLg-A~VILV~~~~~~s~~el~d~i 149 (702) T PRK05632 77 ASGQLD----VLLEEIVAR-YHALA-KDCDVVLVEGLVPTRKHPFALSLNAEIAKNLG-AEVILVSSGGNDTPEELAERI 149 (702) T ss_pred HCCCHH----HHHHHHHHH-HHHHH-CCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHH T ss_conf 689989----999999999-99975-38998999488878898604433599999769-988999638999999999999 Q ss_pred H----HHH-CCCCCHHHHHHHHCCCCCCCC--CCEE----ECCCC-CHHHHHHHHHCCCEEEECCCCHHHH Q ss_conf 7----640-012211445544202458778--8665----12477-6589999984797898827998999 Q gi|254780831|r 249 S----MYQ-KMNIPIIGMIENMSYFLASDT--GKKY----DLFGN-GGARFEAEKIGIPFLESVPFDMDVR 307 (341) Q Consensus 249 ~----~~~-~~~~~i~GiV~NMs~~~~~~~--~~~~----~~fg~-~~~~~~a~~~~i~~lg~IP~d~~i~ 307 (341) T Consensus 150 ~ia~~~f~~~k~~~vlGvIiNr----v~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~lLGvIP~~p~L~ 216 (702) T PRK05632 150 ELAARSFGGAKNANILGVIINK----VNADEQGRTRPDLSEIFDDSSKAAQLFASSPLPLLGVVPWSPDLI 216 (702) T ss_pred HHHHHHHHHCCCCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCC T ss_conf 9999985230699789999847----982355566788998644333321133227987699847960027 |
|
| >PRK10416 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-05 Score=54.82 Aligned_cols=162 Identities=20% Similarity=0.334 Sum_probs=89.5 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341) T Consensus 296 ~VIl~v-GvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~-------------w~~r~~v~vi~~~~--g 359 (499) T PRK10416 296 FVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQV-------------WGQRNNIPVIAQHT--G 359 (499) T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH-------------HHCCCCCEEEECCC--C T ss_conf 799997-4787878989999999999779953788406675689999999-------------84245736983689--9 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCC--------HHHHCC---CCCCEEEEECCCCCHHH Q ss_conf 2210001342024789998675213777589974556444--2100--------000002---23402674214431134 Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHL--------TIAQKI---PLSGVVIVSTPQDLALI 242 (341) Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~l--------sl~~~~---~~~~~iiVttP~~~s~~ 242 (341) T Consensus 360 ~Dpa~-----V~~dai~~a~~----~~~DvviiDTA-GRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlD--a~tGQ 427 (499) T PRK10416 360 ADSAS-----VIFDAIQAAKA----RNVDVLIADTA-GRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTID--ASTGQ 427 (499) T ss_pred CCHHH-----HHHHHHHHHHH----CCCCEEEEECC-CCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE--CCCCH T ss_conf 99799-----99999999997----29998998577-643260999999999999997237899974899977--87677 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCC-HHHHHHHHHCCCEE Q ss_conf 56667776400122114455442024587788665124776-58999998479789 Q gi|254780831|r 243 DVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNG-GARFEAEKIGIPFL 297 (341) Q Consensus 243 da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~-~~~~~a~~~~i~~l 297 (341) T Consensus 428 na~~qak~F~e-~~~ltGiIlTK----lD--Gt-----AKGG~~lsi~~~~~~PI~ 471 (499) T PRK10416 428 NAVSQAKLFHE-AVGLTGITLTK----LD--GT-----AKGGVIFSVADQFGIPIR 471 (499) T ss_pred HHHHHHHHHHH-CCCCCEEEEEC----CC--CC-----CCCHHHHHHHHHHCCCEE T ss_conf 89999999844-27997599965----67--78-----852599999999883959 |
|
| >TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin | Back alignment and domain information |
|---|
Probab=98.22 E-value=8e-06 Score=58.80 Aligned_cols=186 Identities=20% Similarity=0.342 Sum_probs=95.0 Q ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC------------CCCCCCCCCCCCC-----CCCEEECC Q ss_conf 425789999898723577506988224678765310002456------------3112334457663-----22303223 Q gi|254780831|r 107 VGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK------------VEISDKKFLKPKE-----NYGIKIMS 169 (341) Q Consensus 107 VGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~------------~~~~~~~~i~p~~-----~~gi~~~s 169 (341) T Consensus 10 AGKs~l~AaLCRiL~rrGy~VAPFKsQ--NMSLNSfvt~~~~EiA~AQ~~QA~AAGieP~~~mNPvLLKPkgdf~SQviv 87 (502) T TIGR00313 10 AGKSLLTAALCRILARRGYRVAPFKSQ--NMSLNSFVTAEGGEIAIAQALQALAAGIEPSVHMNPVLLKPKGDFTSQVIV 87 (502) T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCHHH--HHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEE T ss_conf 028999999999985278812785011--010133311378755137689998638788623487101678884667898 Q ss_pred CCCCCCCCCCCCCCCCC---HHHHHHHHHHHHCCCCCCEEEEECCCCCC---CCC--------CHHHHCCCCCCEEEEEC Q ss_conf 33435522100013420---24789998675213777589974556444---210--------00000022340267421 Q gi|254780831|r 170 MASLVDENVAMIWRGPM---VQSAIMHMLHNVVWGQLDFLLIDMPPGTG---DAH--------LTIAQKIPLSGVVIVST 235 (341) Q Consensus 170 ~g~l~~~~~~~~~rg~~---~~~~l~~~l~~~~w~~~D~liiD~ppG~g---d~~--------lsl~~~~~~~~~iiVtt 235 (341) T Consensus 88 ~G~a~g~~~~~~Y~~~~~d~~~~~i~eSle-~L~~~Yd~vv~E---GAGS~AEINL~~rDLaN~~iA~~~~-A~~iLvAD 162 (502) T TIGR00313 88 HGRAVGDMNAQEYYKNKVDFLLKAIKESLE-ILAEEYDLVVIE---GAGSPAEINLKERDLANMRIAELAD-ADVILVAD 162 (502) T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEE---CCCCCCCCCCCCCCCHHHHHHHHCC-CCEEEEEE T ss_conf 411246676156777999999999999998-752028889982---6887100053315722478986439-76799975 Q ss_pred CCCC-HHHHHHHHHHHHHCC-CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH Q ss_conf 4431-134566677764001-22114455442024587788665124776589999984797898827998999 Q gi|254780831|r 236 PQDL-ALIDVKRAISMYQKM-NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR 307 (341) Q Consensus 236 P~~~-s~~da~r~~~~~~~~-~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~ 307 (341) T Consensus 163 IDRGGVFAsi~GTl~LL~~~~r~liKG~vINk--f----RG~~~vL--~~GI~~lEelTGiPVLGv~PY~~~l~ 228 (502) T TIGR00313 163 IDRGGVFASIYGTLKLLPEEERKLIKGIVINK--F----RGNVDVL--ESGIEKLEELTGIPVLGVLPYDENLK 228 (502) T ss_pred CCCCCCHHHHHHHHHHCCCCCCCEECEEEECC--C----CCCHHHH--HHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 07774324337466618834575003068835--4----6872443--44568998854842344650125776 |
NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.1e-06 Score=58.75 Aligned_cols=162 Identities=23% Similarity=0.350 Sum_probs=82.1 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341) T Consensus 2 Vi~lv-GptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL-----~~~a--------~~l~v~~~~~~--~~~ 65 (173) T cd03115 2 VILLV-GLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQL-----RVLG--------EQVGVPVFEEG--EGK 65 (173) T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-----HHHH--------HHCCCEEEECC--CCC T ss_conf 99998-99999889999999999997699289997488757799999-----9999--------97498599227--755 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCC-----HHHHCCCCCCEEEEECCCCCHHHHHHHHHH Q ss_conf 210001342024789998675213777589974556444--2100-----000002234026742144311345666777 Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHL-----TIAQKIPLSGVVIVSTPQDLALIDVKRAIS 249 (341) Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~l-----sl~~~~~~~~~iiVttP~~~s~~da~r~~~ 249 (341) T Consensus 66 ~---------~~~~~~~~~~~~~~~~~D~IlIDTa-Gr~~~d~~~~~el~~l~~~~~p~~~~LVl~a--~~~~~~~~~~~ 133 (173) T cd03115 66 D---------PVSIAKRAIEHAREENFDVVIVDTA-GRLQIDENLMEELKKIKRVVKPDEVLLVVDA--MTGQDAVNQAK 133 (173) T ss_pred C---------HHHHHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHHCCCCCEEECCC--CCHHHHHHHHH T ss_conf 8---------7999999999987568998999788-8787999999999999864489721574246--55065899999 Q ss_pred HHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE Q ss_conf 640012211445544202458778866512477658999998479789 Q gi|254780831|r 250 MYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL 297 (341) Q Consensus 250 ~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l 297 (341) T Consensus 134 ~f~~-~~~~~~~I~T-------KlDet~~---~G~~ls~~~~~~~Pi~ 170 (173) T cd03115 134 AFNE-ALGITGVILT-------KLDGDAR---GGAALSIRAVTGKPIK 170 (173) T ss_pred HHHH-CCCCCEEEEE-------EECCCCC---CCHHHHHHHHHCCCEE T ss_conf 9874-2799789997-------1438997---5799999999890908 |
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >pfam00448 SRP54 SRP54-type protein, GTPase domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.7e-06 Score=59.75 Aligned_cols=171 Identities=21% Similarity=0.329 Sum_probs=86.3 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341) T Consensus 2 ~vi~lv-GptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL-----~~y--------a~~l~v~~~~~~---~ 64 (196) T pfam00448 2 NVILLV-GLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQL-----KQL--------AERLGVPVFGSG---T 64 (196) T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-----HHH--------HHHCCCEEEECC---C T ss_conf 699998-99999889999999999997799289997587768899999-----999--------986398178148---7 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCC-----HHHHCCCCCCEEEEECCCCCHHHHHHHHH Q ss_conf 2210001342024789998675213777589974556444--2100-----00000223402674214431134566677 Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHL-----TIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341) Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~l-----sl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341) T Consensus 65 ~~d~--------~~~~~~~l~~~~~~~~D~IlIDTa-Gr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~-~~~~~~~~~~ 134 (196) T pfam00448 65 GSDP--------AAVAFDAVEKAKAENYDVVLVDTA-GRLQNDKNLMDELKKIKRVIAPDEVLLVLDAT-TGQNALNQAK 134 (196) T ss_pred CCCH--------HHHHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHH T ss_conf 7787--------899999999988468999999899-98747677899999998522873028998567-7821378999 Q ss_pred HHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHH Q ss_conf 7640012211445544202458778866512477658999998479789882799899 Q gi|254780831|r 249 SMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDV 306 (341) Q Consensus 249 ~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i 306 (341) T Consensus 135 ~f~~~~~--~~~~I~T-------KlDet~~---~G~~l~~~~~~~~Pi~-~~t~Gq~v 179 (196) T pfam00448 135 AFNEAVG--ITGVILT-------KLDGDAK---GGAALSIAAETGKPIK-FIGVGEKI 179 (196) T ss_pred HHHHHCC--CCCEEEE-------EECCCCC---CCHHHHHHHHHCCCEE-EEECCCCH T ss_conf 8760047--7626888-------4057887---5299989999896979-99679981 |
This family includes relatives of the G-domain of the SRP54 family of proteins. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.6e-05 Score=53.74 Aligned_cols=169 Identities=17% Similarity=0.241 Sum_probs=89.2 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCC--CCCCCCCEEECCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233445--7663223032233343 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFL--KPKENYGIKIMSMASL 173 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i--~p~~~~gi~~~s~g~l 173 (341) T Consensus 242 q~IALV-GPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGA------VEQLKTY--AeIMgVPV~-----VV----- 302 (436) T PRK11889 242 QTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGT------VQQLQDY--VKTIGFEVI-----AV----- 302 (436) T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH------HHHHHHH--HHHHCCCEE-----EE----- T ss_conf 179998-9999888999999999986169808999806634769------9999999--998499439-----96----- Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CC-CC----HHHHCCCCCCEEEEECCCCCHHHHHHH Q ss_conf 552210001342024789998675213777589974556444--21-00----000002234026742144311345666 Q gi|254780831|r 174 VDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DA-HL----TIAQKIPLSGVVIVSTPQDLALIDVKR 246 (341) Q Consensus 174 ~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~-~l----sl~~~~~~~~~iiVttP~~~s~~da~r 246 (341) T Consensus 303 ~dp~--------eL~~AL~~l-kdk--a~~DLILIDTA-GRS~RD~~~I~EL~~~l~~~~p~ev~LVLS-ATTK~~DL~e 369 (436) T PRK11889 303 RDEA--------AMTRALTYF-KEE--ARVDYILIDTA-GKNYRASETVEEMIETMGQVEPDYICLTLS-ASMKSKDMIE 369 (436) T ss_pred CCHH--------HHHHHHHHH-HHC--CCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCEEEEEEE-CCCCHHHHHH T ss_conf 8889--------999999987-633--68888999298-988468999999999985127771699997-8899899999 Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE-----CCCCHHHHH Q ss_conf 77764001221144554420245877886651247765899999847978988-----279989997 Q gi|254780831|r 247 AISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES-----VPFDMDVRV 308 (341) Q Consensus 247 ~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~-----IP~d~~i~~ 308 (341) T Consensus 370 Ii~rF~~l~i--dglIfT-------KLDET~---SlG~ILNv~~~s~LPIsYvTdGQ~VPEDIevA~ 424 (436) T PRK11889 370 IITNFKDIHI--DGIVFT-------KFDETA---SSGELLKIPAVSSAPIVLMTDGQDVKKNIHIAT 424 (436) T ss_pred HHHHHCCCCC--CEEEEE-------ECCCCC---CCHHHHHHHHHHCCCEEEECCCCCCCCCHHHCC T ss_conf 9997257998--828997-------132568---703788899883998799789985875300069 |
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.3e-05 Score=53.95 Aligned_cols=168 Identities=23% Similarity=0.364 Sum_probs=85.8 Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCC-CC-EEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCC Q ss_conf 542010244666542578999989872357-75-0698822467876531000245631123344576632230322333 Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNK-GK-NVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMA 171 (341) Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~-G~-~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g 171 (341) T Consensus 209 ~~~vvalV-GPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~DtyRigA-----~e-QLk~--Ya~il-----gvp~~--- 271 (412) T PRK05703 209 QGGVVALV-GPTGVGKTTTLAKLAARYALEEGKDKVALITLDTYRIGA-----VE-QLKT--YAKIM-----GIPVK--- 271 (412) T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH-----HH-HHHH--HHHHC-----CCEEE--- T ss_conf 67369998-888875676999999999997299817999837677779-----99-9999--99971-----97379--- Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CC-C---C-HHHHCCCCCCEEEEECCCCCHHHHH Q ss_conf 43552210001342024789998675213777589974556444--21-0---0-0000022340267421443113456 Q gi|254780831|r 172 SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DA-H---L-TIAQKIPLSGVVIVSTPQDLALIDV 244 (341) Q Consensus 172 ~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~-~---l-sl~~~~~~~~~iiVttP~~~s~~da 244 (341) T Consensus 272 -v~~~--~~-----~l~~al~~----~--~~~dlILIDTa-G~s~~d~~~~~eL~~~~~~~~~~~~~LVlsa-t~~~~dl 335 (412) T PRK05703 272 -VAYD--PK-----ELAKALEQ----L--ANCDLILIDTA-GRSQRDPRLISELKALIENSKPIDVYLVLSA-TTKYRDL 335 (412) T ss_pred -EECC--HH-----HHHHHHHH----H--CCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHH T ss_conf -8479--99-----99999987----1--58997999689-8897899999999999862488718999759-8998999 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE-----CCCCHHH Q ss_conf 6677764001221144554420245877886651247765899999847978988-----2799899 Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES-----VPFDMDV 306 (341) Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~-----IP~d~~i 306 (341) T Consensus 336 ~~i~~~f~~~~~~--~lI~-------TKlDEt~~---~G~il~~~~~~~lplsy~t~GQ~VPeDi~~ 390 (412) T PRK05703 336 KDIVKHFSRLPLD--GLIL-------TKLDETSS---LGSILSLLIESGLPISYLTDGQRVPDDIKV 390 (412) T ss_pred HHHHHHHCCCCCC--EEEE-------EEECCCCC---CCHHHHHHHHHCCCEEEEECCCCCHHHHHC T ss_conf 9999984679998--7999-------71128998---629999999988796999469997243422 |
|
| >PRK00784 cobyric acid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.1e-05 Score=54.10 Aligned_cols=191 Identities=19% Similarity=0.324 Sum_probs=99.4 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEE---CCC----CC-----CCCCCCCCCC---- Q ss_conf 4201024466654257899998987235775069882246787653100---024----56-----3112334457---- Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLL---KIS----GK-----VEISDKKFLK---- 158 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~l---g~~----~~-----~~~~~~~~i~---- 158 (341) T Consensus 3 ~k~lMv~GT~S~vGKS~l~aaLCRi~~~~G~~VaPFKaQ--NMslNs~vt~dG~EigrAQ~~QA~Aag~~p~v~MNPILL 80 (492) T PRK00784 3 AKALMVQGTTSDAGKSTLVAGLCRILARRGLRVAPFKAQ--NMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPVLL 80 (492) T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHH--HCCCCCEECCCCCEEHHHHHHHHHHCCCCCCCCCCCEEE T ss_conf 630588867888779999999999999589855785702--246651788999833699999999869999767688776 Q ss_pred -CCCCCCEEECCCCCCCCC--------CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC---CCCC------- Q ss_conf -663223032233343552--------210001342024789998675213777589974556444---2100------- Q gi|254780831|r 159 -PKENYGIKIMSMASLVDE--------NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG---DAHL------- 219 (341) Q Consensus 159 -p~~~~gi~~~s~g~l~~~--------~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g---d~~l------- 219 (341) T Consensus 81 KP~gd~~SQVIv~Gk~~g~~~a~~Y~~~~~~~~~--~v~~a~~~-----L~~~~d~iV~E---GAGSpaEiNL~~~Di~N 150 (492) T PRK00784 81 KPQSDTGSQVIVQGKVVGNMDARDYHDYKPRLLE--AVLESLDR-----LAAEYDLVVVE---GAGSPAEINLRDRDIAN 150 (492) T ss_pred CCCCCCCCEEEECCEECCCCCHHHHHHHHHHHHH--HHHHHHHH-----HHHHCCEEEEE---CCCCCCCCCCCHHHHHH T ss_conf 3189988679999978753139999986999999--99999999-----88658899993---58982002652200242 Q ss_pred -HHHHCCCCCCEEEEECCCCC-HHHHHHHHHHHHHCC-CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCE Q ss_conf -00000223402674214431-134566677764001-221144554420245877886651247765899999847978 Q gi|254780831|r 220 -TIAQKIPLSGVVIVSTPQDL-ALIDVKRAISMYQKM-NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPF 296 (341) Q Consensus 220 -sl~~~~~~~~~iiVttP~~~-s~~da~r~~~~~~~~-~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~ 296 (341) T Consensus 151 m~~A~~~~-apviLV~DIdRGGvfAsl~GT~~lL~~~eR~li~G~IiNK--FR----GD~-~ll-~pG~~~le~~tg~Pv 221 (492) T PRK00784 151 MGFAEAAD-APVILVADIDRGGVFASLVGTLALLSPEERARVKGFVINK--FR----GDI-SLL-EPGLDWLEELTGIPV 221 (492) T ss_pred HHHHHHCC-CCEEEEEECCCCCHHHHHHHHHHHCCHHHHHHEEEEEEEE--EC----CCH-HHH-CCHHHHHHHHHCCCC T ss_conf 89998659-9889999756764268776388759998871158999976--45----874-663-559999999868980 Q ss_pred EEECCCCHHH Q ss_conf 9882799899 Q gi|254780831|r 297 LESVPFDMDV 306 (341) Q Consensus 297 lg~IP~d~~i 306 (341) T Consensus 222 lGviP~~~~l 231 (492) T PRK00784 222 LGVLPYLDDL 231 (492) T ss_pred EEEECCCCCC T ss_conf 6861465679 |
|
| >COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.5e-05 Score=56.91 Aligned_cols=182 Identities=20% Similarity=0.233 Sum_probs=100.4 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-------------CCCCCCCCC Q ss_conf 2010244666542578999989872357750698822467876531000245631123-------------344576632 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-------------KKFLKPKEN 162 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-------------~~~i~p~~~ 162 (341) T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPV--------qsG~~~~~~~~D~~~l~~~~~~~~~~~~~~py~- 73 (223) T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPV--------QTGSEETAENSDALVLQRLSGLDLSYELINPYR- 73 (223) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCE--------EECCCCCCCCCHHHHHHHHCCCCCCCCCCCCEE- T ss_conf 36999827999649999999999999689705987752--------217877899745999998519986633543353- Q ss_pred CCEE-ECCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CCCCHHHHCCC--CCCEEEE Q ss_conf 2303-223334355--2210001342024789998675213777589974556444----21000000022--3402674 Q gi|254780831|r 163 YGIK-IMSMASLVD--ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG----DAHLTIAQKIP--LSGVVIV 233 (341) Q Consensus 163 ~gi~-~~s~g~l~~--~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g----d~~lsl~~~~~--~~~~iiV 233 (341) T Consensus 74 --f~~P~sP-hlAa~~eg~~I-~~-~~l~~~l~~-----l~~~~d~vlVEGAGGl~vPl~~~-~~~~D~~~~~~lpvILV 142 (223) T COG0132 74 --FKEPLSP-HLAAELEGRTI-DL-EKLSQGLRQ-----LLKKYDLVLVEGAGGLLVPLTEE-YTFADLAVQLQLPVILV 142 (223) T ss_pred --CCCCCCC-HHHHHHCCCCC-CH-HHHHHHHHH-----HHCCCCEEEEECCCCEEEECCCC-CCHHHHHHHCCCCEEEE T ss_conf --0788884-77787648935-69-999878885-----40546789996787333325786-52999999809999999 Q ss_pred ECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHH-HHHHHHCCCEEEECCCCHHH Q ss_conf 21443113456667776400122114455442024587788665124776589-99998479789882799899 Q gi|254780831|r 234 STPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGAR-FEAEKIGIPFLESVPFDMDV 306 (341) Q Consensus 234 ttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~-~~a~~~~i~~lg~IP~d~~i 306 (341) T Consensus 143 ~~~~LGtINHtlLt~eal~~~gl~l~G~I~n~~---~~~~~~~~~------~~~~l~~~~~~p~~g~~p~~~~~ 207 (223) T COG0132 143 VGIKLGTINHTLLTVEALRARGLPLAGWVANGI---NPELDHYAE------INATLLKRIGAPLLGIIPYLPES 207 (223) T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC---CCCHHHHHH------HHHHHHHHCCCCCCCCCCCCCCC T ss_conf 667757787999999999977998789997267---885557888------89999974289743405577663 |
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.4e-05 Score=52.34 Aligned_cols=167 Identities=19% Similarity=0.281 Sum_probs=85.9 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHC----CCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCC Q ss_conf 420102446665425789999898723----5775069882246787653100024563112334457663223032233 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALK----NKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSM 170 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala----~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~ 170 (341) T Consensus 174 ~~vi~lV-GPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQL-----ktya-~--il-----~vp~~v- 238 (388) T PRK12723 174 KRIFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI-----QTYG-D--IM-----GIPVKA- 238 (388) T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH-----HHHH-H--HH-----CCCEEE- T ss_conf 6289998-998875787999999999986267677379998078758899999-----9999-9--97-----880698- Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CC-CC----HHHHCCCCC-CEEEEECCCCCHHH Q ss_conf 343552210001342024789998675213777589974556444--21-00----000002234-02674214431134 Q gi|254780831|r 171 ASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DA-HL----TIAQKIPLS-GVVIVSTPQDLALI 242 (341) Q Consensus 171 g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~-~l----sl~~~~~~~-~~iiVttP~~~s~~ 242 (341) T Consensus 239 ---~~~~~-------dl~~~l~~------~~~~D~IlIDTA-Grs~~d~~~~~el~~~~~~~~~~~~~~Lvlsa-t~~~~ 300 (388) T PRK12723 239 ---IESFK-------DLKEEITQ------SKDFDLVLIDTI-GKSPKDFMKLAEMKELLNACGRDAEFHLAVSS-TTKTS 300 (388) T ss_pred ---ECCHH-------HHHHHHHH------HCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC-CCCHH T ss_conf ---57889-------99999997------249999999589-98856899999999999741898459999879-89999 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE----EE-CCCCHHH Q ss_conf 5666777640012211445544202458778866512477658999998479789----88-2799899 Q gi|254780831|r 243 DVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL----ES-VPFDMDV 306 (341) Q Consensus 243 da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l----g~-IP~d~~i 306 (341) T Consensus 301 d~~~i~~~f~~~~~--~~~I~T-------KlDEt~~---~G~~l~~~~~~~~Pi~yit~GQ~VPdDie~ 357 (388) T PRK12723 301 DIKEIFHQFSPFSY--KTVIFT-------KLDETTC---VGNLISLIHEMRKEVSYVTDGQIVPHNISI 357 (388) T ss_pred HHHHHHHHHCCCCC--CEEEEE-------ECCCCCC---CCHHHHHHHHHCCCEEEEECCCCCCCCCCC T ss_conf 99999998427999--849998-------3227898---669999999988886999389968302033 |
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.8e-05 Score=51.54 Aligned_cols=168 Identities=21% Similarity=0.289 Sum_probs=85.3 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCC-CC-CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCC Q ss_conf 4201024466654257899998987235-77-506988224678765310002456311233445766322303223334 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKN-KG-KNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMAS 172 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~-~G-~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~ 172 (341) T Consensus 176 ggV~alV-GPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIg-----AvE-QLktY--a~Il-----gvPv~---- 237 (404) T PRK06995 176 GGVFALV-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIG-----GHE-QLRIY--GKIL-----GVPVH---- 237 (404) T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH-----HHH-HHHHH--HHHC-----CCEEE---- T ss_conf 7558986-68887637589999999999838983799976875478-----999-99999--9875-----95599---- Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC----CHHHHCC-CCCCEEEEECCCCCHHHHHH Q ss_conf 3552210001342024789998675213777589974556444--210----0000002-23402674214431134566 Q gi|254780831|r 173 LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH----LTIAQKI-PLSGVVIVSTPQDLALIDVK 245 (341) Q Consensus 173 l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~----lsl~~~~-~~~~~iiVttP~~~s~~da~ 245 (341) T Consensus 238 vv~~~~-------eL~~aL~~l------~~~dlILIDTa-Grs~rD~~~~e~l~~l~~~~~~~~~~LVLsa-t~~~~dl~ 302 (404) T PRK06995 238 AVKDAA-------DLRLALAEL------RNKHIVLIDTV-GMSQRDRMVSEQIAMLHGAGAPVQRLLLLNA-TSHGDTLN 302 (404) T ss_pred EECCHH-------HHHHHHHHH------CCCCEEEEECC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHHH T ss_conf 959999-------999999970------89999998099-9897688899999999735788528999779-89999999 Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE-----CCCCHHHH Q ss_conf 677764001221144554420245877886651247765899999847978988-----27998999 Q gi|254780831|r 246 RAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES-----VPFDMDVR 307 (341) Q Consensus 246 r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~-----IP~d~~i~ 307 (341) T Consensus 303 ~i~~~f~~~~~--~~~I~-------TKLDEt~~---~G~iln~~~~~~lPlsy~T~GQ~VPeDi~~A 357 (404) T PRK06995 303 EVVQAYRGPGL--AGCIL-------TKLDEAAS---LGGALDTVIRHKLPLHYVSNGQRVPEDLHVA 357 (404) T ss_pred HHHHHHCCCCC--CEEEE-------ECCCCCCC---HHHHHHHHHHHCCCEEEECCCCCCCCCHHCC T ss_conf 99998446999--83998-------30406797---2399999999789859981899584212108 |
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.3e-05 Score=54.67 Aligned_cols=170 Identities=24% Similarity=0.364 Sum_probs=102.3 Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC Q ss_conf 54201024466654257899998987235775069882246787653100024563112334457663223032233343 Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASL 173 (341) Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l 173 (341) T Consensus 81 kp~Vil~V-GVNG~GKTTTIaKLA~~l~~~Gk~V~laAgDTFRAAA-------------~EQL~~Wa~R~gv~vi~~~~g 146 (284) T TIGR00064 81 KPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAA-------------IEQLEVWAKRLGVDVIKQKEG 146 (284) T ss_pred CCEEEEEE-EEECCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH-------------HHHHHHHHHHHCCEEEECCCC T ss_conf 97799998-4408860102889999998749908998275247999-------------999999898838755407889 Q ss_pred -CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC----C--------HHHHC-CC---CCCEEEEECC Q ss_conf -552210001342024789998675213777589974556444210----0--------00000-22---3402674214 Q gi|254780831|r 174 -VDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAH----L--------TIAQK-IP---LSGVVIVSTP 236 (341) Q Consensus 174 -~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~----l--------sl~~~-~~---~~~~iiVttP 236 (341) T Consensus 147 n~D-PAaV~f------DAi~~A----k~~niDvvliDT---AGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVl-- 210 (284) T TIGR00064 147 NAD-PAAVIF------DAIQAA----KARNIDVVLIDT---AGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVL-- 210 (284) T ss_pred CCC-CHHHHH------HHHHHH----HHCCCCEEEEEC---CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-- T ss_conf 887-178999------989999----874997899734---7545466203999999999873210257875575422-- Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCC-HHHHHHHHHCCCEE--EE-------CCCCHH Q ss_conf 43113456667776400122114455442024587788665124776-58999998479789--88-------279989 Q gi|254780831|r 237 QDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNG-GARFEAEKIGIPFL--ES-------VPFDMD 305 (341) Q Consensus 237 ~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~-~~~~~a~~~~i~~l--g~-------IP~d~~ 305 (341) T Consensus 211 DAt~Gqna~~QA~~F~ea-v~ltGiiLTK------LDg~-----AKGG~~l~i~~~l~~Pv~~~G~GE~~dDL~~Fd~~ 277 (284) T TIGR00064 211 DATTGQNALEQAKVFNEA-VGLTGIILTK------LDGT-----AKGGIILAIAYELKLPVKFIGVGEKIDDLAPFDAD 277 (284) T ss_pred HHHHHHHHHHHHHHHHHH-CCCCEEEEEC------CCCC-----CHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHH T ss_conf 022203089999998654-0688589963------4688-----03789998899857976998548873320147978 |
ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00025 Score=48.78 Aligned_cols=166 Identities=17% Similarity=0.264 Sum_probs=85.1 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCC-C-CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCC Q ss_conf 2010244666542578999989872357-7-5069882246787653100024563112334457663223032233343 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNK-G-KNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASL 173 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~-G-~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l 173 (341) T Consensus 349 Gv~Alv-GpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRig------a~eQL~~y--~~il-----gvpv~----~ 410 (557) T PRK12727 349 GVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVG------GREQLHSY--GRQL-----GIAVH----E 410 (557) T ss_pred CEEEEE-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH------HHHHHHHH--HHHH-----CCEEE----E T ss_conf 647874-37776731179999999999739981899972664087------99999999--9983-----97579----8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC----CHHHHCC-CCCCEEEEECCCCCHHHHHHH Q ss_conf 552210001342024789998675213777589974556444--210----0000002-234026742144311345666 Q gi|254780831|r 174 VDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH----LTIAQKI-PLSGVVIVSTPQDLALIDVKR 246 (341) Q Consensus 174 ~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~----lsl~~~~-~~~~~iiVttP~~~s~~da~r 246 (341) T Consensus 411 ~~~~~-------~l~~~l~~l------~~~~lvliDTa-G~~~rd~~~~~~~~~l~~~~~~~~~Lvl~a~--~~~~~l~~ 474 (557) T PRK12727 411 ADSAE-------SLLDLLERL------RDYKLVLIDTA-GMGQRDRALAAQLNWLRAARQVTSLLVLPAN--AHFSDLDE 474 (557) T ss_pred ECCHH-------HHHHHHHHH------CCCCEEEEECC-CCCCCCHHHHHHHHHHHCCCCCCEEEEEECC--CCHHHHHH T ss_conf 28999-------999999983------69998999499-9884699999999987514776359999688--99899999 Q ss_pred HHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE-----CCCCHHHH Q ss_conf 77764001221144554420245877886651247765899999847978988-----27998999 Q gi|254780831|r 247 AISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES-----VPFDMDVR 307 (341) Q Consensus 247 ~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~-----IP~d~~i~ 307 (341) T Consensus 475 ~~~~~~~~--~~~~~i~T-------KlDE~~~---~G~~l~~~~~~~lp~~y~t~GQ~VPeDi~~a 528 (557) T PRK12727 475 VVRRFAHA--KPQGVVLT-------KLDETGR---FGSALSVVVDHQMPITWVTDGQRVPDDLHRA 528 (557) T ss_pred HHHHHCCC--CCCEEEEE-------ECCCCCC---CCHHHHHHHHHCCCEEEECCCCCCCCCHHHC T ss_conf 99985379--98748996-------1436787---0399999999689828975898285236438 |
|
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00033 Score=48.04 Aligned_cols=162 Identities=23% Similarity=0.312 Sum_probs=86.1 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC Q ss_conf 42010244666542578999989872357750698822467876531000245631123344576632230322333435 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLV 174 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~ 174 (341) T Consensus 139 p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~-------------~w~er~gv~vI~~~--~ 202 (340) T COG0552 139 PFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLE-------------VWGERLGVPVISGK--E 202 (340) T ss_pred CEEEEEE-ECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-------------HHHHHHCCEEECCC--C T ss_conf 6799999-348886371799999999978986999823347899999999-------------99999599278259--9 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCC--CHHHHCC--------C-----CCCEEEEECCCCC Q ss_conf 52210001342024789998675213777589974556444210--0000002--------2-----3402674214431 Q gi|254780831|r 175 DENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAH--LTIAQKI--------P-----LSGVVIVSTPQDL 239 (341) Q Consensus 175 ~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~--lsl~~~~--------~-----~~~~iiVttP~~~ 239 (341) T Consensus 203 G~DpAa-----VafDAi~~A----kar~~DvvliDTA---GRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvl--DAt 268 (340) T COG0552 203 GADPAA-----VAFDAIQAA----KARGIDVVLIDTA---GRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVL--DAT 268 (340) T ss_pred CCCCHH-----HHHHHHHHH----HHCCCCEEEEECC---CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEE--ECC T ss_conf 998089-----999999999----9769999999675---54457366899999999984645689984289997--756 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE Q ss_conf 1345666777640012211445544202458778866512477658999998479789 Q gi|254780831|r 240 ALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL 297 (341) Q Consensus 240 s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l 297 (341) T Consensus 269 tGqnal~QAk~F~e-av~l~GiIlTK----lDgtAK------GG~il~I~~~l~~PI~ 315 (340) T COG0552 269 TGQNALSQAKIFNE-AVGLDGIILTK----LDGTAK------GGIILSIAYELGIPIK 315 (340) T ss_pred CCHHHHHHHHHHHH-HCCCCEEEEEE----CCCCCC------CCEEEEHHHHHCCCEE T ss_conf 47568999999987-52886699970----246777------6243508888699979 |
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00097 Score=44.92 Aligned_cols=168 Identities=25% Similarity=0.319 Sum_probs=85.1 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHC--CCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCC Q ss_conf 420102446665425789999898723--577506988224678765310002456311233445766322303223334 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALK--NKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMAS 172 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala--~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~ 172 (341) T Consensus 203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI------GA~EQLk~Ya~im~vp~~-----v----- 265 (407) T COG1419 203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI------GAVEQLKTYADIMGVPLE-----V----- 265 (407) T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHH------HHHHHHHHHHHHHCCCEE-----E----- T ss_conf 8579998-9988758879999999997532576068997144115------289999999998699559-----9----- Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCC-----HHHHCCCCCCE-EEEECCCCCHHHHH Q ss_conf 3552210001342024789998675213777589974556444--2100-----00000223402-67421443113456 Q gi|254780831|r 173 LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHL-----TIAQKIPLSGV-VIVSTPQDLALIDV 244 (341) Q Consensus 173 l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~l-----sl~~~~~~~~~-iiVttP~~~s~~da 244 (341) T Consensus 266 -v~~~~-------el~~ai~~l------~~~d~ILVDTa-Grs~~D~~~i~el~~~~~~~~~i~~~Lvlsa--t~K~~dl 328 (407) T COG1419 266 -VYSPK-------ELAEAIEAL------RDCDVILVDTA-GRSQYDKEKIEELKELIDVSHSIEVYLVLSA--TTKYEDL 328 (407) T ss_pred -ECCHH-------HHHHHHHHH------HCCCEEEEECC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC--CCCHHHH T ss_conf -63999-------999999985------31888999689-9883378999999999703566217999845--7646889 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE----EE-CCCCHHHHH Q ss_conf 66777640012211445544202458778866512477658999998479789----88-279989997 Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL----ES-VPFDMDVRV 308 (341) Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l----g~-IP~d~~i~~ 308 (341) T Consensus 329 kei~~~f~~~~--i~~~I~T-------KlDET~s~---G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~ 385 (407) T COG1419 329 KEIIKQFSLFP--IDGLIFT-------KLDETTSL---GNLFSLMYETRLPVSYVTNGQRVPEDIVVAN 385 (407) T ss_pred HHHHHHHCCCC--CCEEEEE-------CCCCCCCH---HHHHHHHHHHCCCEEEEECCCCCCCHHHHCC T ss_conf 99999724588--6616897-------13356763---3899999996897499717987870355358 |
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00031 Score=48.19 Aligned_cols=171 Identities=18% Similarity=0.307 Sum_probs=88.9 Q ss_pred CCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCC Q ss_conf 46542010244666542578999989872357750698822467876531000245631123344576632230322333 Q gi|254780831|r 92 LNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMA 171 (341) Q Consensus 92 ~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g 171 (341) T Consensus 203 l~~g~VIaLV-GvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~-------------g~rlgVpV~~-- 266 (407) T PRK12726 203 LSNHRIISLI-GQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGY-------------ADKLDVELIV-- 266 (407) T ss_pred ECCCCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH-------------HHHHCCEEEE-- T ss_conf 0369089998-99989789999999999997799179997066778899999999-------------9997964998-- Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCC-CH----HHHCCCCCCEEEEECCCCCHHHHH Q ss_conf 43552210001342024789998675213777589974556444--210-00----000022340267421443113456 Q gi|254780831|r 172 SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAH-LT----IAQKIPLSGVVIVSTPQDLALIDV 244 (341) Q Consensus 172 ~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~-ls----l~~~~~~~~~iiVttP~~~s~~da 244 (341) T Consensus 267 ---~~dpa~------l~~av~~~-a~--~~~~DvVIIDTA-GRl~~d~~Lm~EL~ki~~vi~P~~~lLV~da-g~~~~~v 332 (407) T PRK12726 267 ---ATSPAE------LEEAVQYM-TY--VNCVDHILIDTV-GRNYLAEESVSEISAYTDVVHPDLTCFTFSS-GMKSADV 332 (407) T ss_pred ---ECCHHH------HHHHHHHH-HH--CCCCCEEEEECC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHH T ss_conf ---188899------99999999-86--289998999699-9881349999999998733289669999367-5669999 Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE--EE---CCCCH Q ss_conf 66777640012211445544202458778866512477658999998479789--88---27998 Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL--ES---VPFDM 304 (341) Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l--g~---IP~d~ 304 (341) T Consensus 333 ~qa~~~~~--~v~ItGiILTK-------LDgtA---KGG~aLSi~~~~~lPI~fIG~GEkIPEDi 385 (407) T PRK12726 333 MTILPKLA--EIPIDGFIITK-------MDETT---RIGDLYTVMQETNLPVLYMTDGQNITENI 385 (407) T ss_pred HHHHHHHC--CCCCCEEEEEE-------CCCCC---CCCHHHHHHHHHCCCEEEEECCCCCCCCC T ss_conf 99998704--79998799970-------14789---85399999999888979994799997012 |
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00082 Score=45.38 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=83.5 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCCCCEECCCCCCCCCCCCCCCCCC-CCCEEECCCCC Q ss_conf 4201024466654257899998987235775069882246-787653100024563112334457663-22303223334 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-YGPSIPKLLKISGKVEISDKKFLKPKE-NYGIKIMSMAS 172 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-~~ps~~~~lg~~~~~~~~~~~~i~p~~-~~gi~~~s~g~ 172 (341) T Consensus 2 ~Rniai~-gH~gaGKTtL~EalL~~~G~i-~r~G~V~~~~~~g~t~------------~D---~~~eE~~R~iSi~~--- 61 (267) T cd04169 2 RRTFAII-SHPDAGKTTLTEKLLLFGGAI-REAGAVKARKSRKHAT------------SD---WMEIEKQRGISVTS--- 61 (267) T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHCCCC-CCCCEEEECCCCCCCC------------CC---CHHHHHHCCCEEEC--- T ss_conf 0179998-479999899999999866863-3385463036888604------------68---87999865944863--- Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHH Q ss_conf 35522100013420247899986752137775899745564442100000002-23402674214431134566677764 Q gi|254780831|r 173 LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKI-PLSGVVIVSTPQDLALIDVKRAISMY 251 (341) Q Consensus 173 l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~-~~~~~iiVttP~~~s~~da~r~~~~~ 251 (341) T Consensus 62 -----------------~----~~~~~w~~~kinliDTP-G~~DF~~e~~~al~v~D~AviVv~a~~GVe~~T~~~w~~a 119 (267) T cd04169 62 -----------------S----VMQFEYRDCVINLLDTP-GHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVC 119 (267) T ss_pred -----------------C----EEEEEECCEEEEEEECC-CCHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHH T ss_conf -----------------6----37887899899999796-9778999999999886454799525666535589999999 Q ss_pred HCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCE-EEECCC Q ss_conf 001221144554420245877886651247765899999847978-988279 Q gi|254780831|r 252 QKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPF-LESVPF 302 (341) Q Consensus 252 ~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~-lg~IP~ 302 (341) T Consensus 120 ~~~~iP~i-ifINK----mDr~~ad---f-~~~l~~i~~~lg~~~vpi~lPi 162 (267) T cd04169 120 RLRGIPII-TFINK----LDREGRD---P-LELLDEIEEELGIDCTPLTWPI 162 (267) T ss_pred HHCCCCEE-EEEEC----CCCCCCC---H-HHHHHHHHHHHCCCCCEEEEEE T ss_conf 97299979-99853----4567898---7-8999999998687751168775 |
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.004 Score=40.78 Aligned_cols=152 Identities=20% Similarity=0.326 Sum_probs=82.2 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCC Q ss_conf 1024466654257899998987235775069882246787653100024563112334457663-223032233343552 Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKE-NYGIKIMSMASLVDE 176 (341) Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~-~~gi~~~s~g~l~~~ 176 (341) T Consensus 2 i~ii-gH~~aGKTtL~E~lL~~~-g~i~~~G~V~~---g~t~------------~D---~~~~E~~RgiSi~s------- 54 (268) T cd04170 2 IALV-GHSGSGKTTLAEALLYAT-GAIDRLGSVED---GTTV------------SD---YDPEEIKRKMSIST------- 54 (268) T ss_pred EEEE-ECCCCCHHHHHHHHHHHC-CCCCCCCCCCC---CCCC------------CC---CCHHHHHCCCCEEC------- T ss_conf 8999-089999899999999966-99665765458---9735------------77---87889867967513------- Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 210001342024789998675213777589974556444210000000-2234026742144311345666777640012 Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQK-IPLSGVVIVSTPQDLALIDVKRAISMYQKMN 255 (341) Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~-~~~~~~iiVttP~~~s~~da~r~~~~~~~~~ 255 (341) T Consensus 55 -------------~----~~~~~w~~~~inliDTP-G~~DF~~e~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~ 116 (268) T cd04170 55 -------------S----VAPLEWKGHKINLIDTP-GYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAG 116 (268) T ss_pred -------------C----EEEEEECCEEEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC T ss_conf -------------5----57888899799998698-97579999999840478399994187547687999999999859 Q ss_pred CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE-EECCCC Q ss_conf 211445544202458778866512477658999998479789-882799 Q gi|254780831|r 256 IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL-ESVPFD 303 (341) Q Consensus 256 ~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l-g~IP~d 303 (341) T Consensus 117 iP~i-~fINK----mDr~~ad---~-~~~l~~i~~~lg~~~vp~~~Pig 156 (268) T cd04170 117 IPRI-IFINK----MDRERAD---F-DKTLAALQEAFGRPVVPLQLPIG 156 (268) T ss_pred CCEE-EEEEC----CCCCCCC---H-HHHHHHHHHHHCCCEEEEEEEEC T ss_conf 9989-99978----7878996---4-77999999986898499996652 |
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0038 Score=40.95 Aligned_cols=190 Identities=16% Similarity=0.212 Sum_probs=90.7 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEE-----ECC Q ss_conf 420102446665425789999898723577506988224678765310002456311233445766322303-----223 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIK-----IMS 169 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~-----~~s 169 (341) T Consensus 2 ~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~kPI~--~~----~~~~~~~~~e~---~~~~~~~~l~~~~~~~~~ 72 (354) T COG0857 2 SRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFKPIG--TR----TGKDADDLTEE---DIRATSSSLTYAEPLVLS 72 (354) T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CC----CCCCCCHHHHH---HHHHHHHHCCCCCCCCHH T ss_conf 6149984268886288999999999997073269984045--55----67765206899---998765205667530000 Q ss_pred CC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE------CCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHH Q ss_conf 33-43552210001342024789998675213777589974------556444210000000223402674214431134 Q gi|254780831|r 170 MA-SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID------MPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALI 242 (341) Q Consensus 170 ~g-~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD------~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~ 242 (341) T Consensus 73 ~ae~L~~~~~~d~l~e-----~i~~~y~e~~-~~~~~vv~~g~~~~~~~~~~~~ln~~iA~~Ln-a~~vlva~~~~~~~~ 145 (354) T COG0857 73 FAEVLLSTGQDDVLLE-----EILANYAELA-KDADVVVVEGDVPTREGPYALDLNYEIAKNLN-AAAVLVARALLVTPY 145 (354) T ss_pred HHHHHHCCCCCHHHHH-----HHHHHHHHHH-CCCCEEEECCCEECCCCCCCCCCCHHHHHHCC-CCHHHCCCCCCCCHH T ss_conf 6888741564167999-----9999999872-36766884253001335764101479885068-115431141337766 Q ss_pred H----HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH Q ss_conf 5----6667776400122114455442024587788665124776589999984797898827998999 Q gi|254780831|r 243 D----VKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR 307 (341) Q Consensus 243 d----a~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~ 307 (341) T Consensus 146 ~~~~~i~~~~~~~~~~~~~l~gVv~N~~--~~~~~~~-----~~~~l~~~~~~~~~~~~~~l~~~~ll~ 207 (354) T COG0857 146 ELKSRVELALAAFGAAGNNLAGVVINNA--PVDEAGR-----TEDLLAEFLESSGIAVVGVLPPNRLLR 207 (354) T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCC--CHHHHHH-----HHHHHHHHHHHCCCCCCCCCCHHHHHC T ss_conf 6566999999886056883589996578--7555232-----446899876302543224478778753 |
|
| >PRK06278 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.009 Score=38.46 Aligned_cols=173 Identities=25% Similarity=0.350 Sum_probs=95.5 Q ss_pred CCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCC-EE Q ss_conf 22234654201024466654257899998987235775069882246787653100024563112334457663223-03 Q gi|254780831|r 88 QRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYG-IK 166 (341) Q Consensus 88 ~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~g-i~ 166 (341) T Consensus 237 ~~k~~~~kkgiiLl~TgS~SGKTFl~T~i~~kL~~k---vfv~--Ki-GpDvRDIV---PsLYll-r---E~M~ky~SIk 303 (482) T PRK06278 237 RNKNPEVKKGIILLATGSESGKTFLSTSIVSKLRGK---TFVS--KI-GPDVRDIV---PSLYLL-R---EPMEKYSSIK 303 (482) T ss_pred CCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHCCC---EEEE--EC-CCCHHHCC---HHHHHC-C---CHHHHCCCEE T ss_conf 047888996599984378777431167788875064---8998--60-88666525---246310-4---2122046168 Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE--CCCCCCC---C-CCHHHHCCCCCC--EEEEECCCC Q ss_conf 2233343552210001342024789998675213777589974--5564442---1-000000022340--267421443 Q gi|254780831|r 167 IMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID--MPPGTGD---A-HLTIAQKIPLSG--VVIVSTPQD 238 (341) Q Consensus 167 ~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD--~ppG~gd---~-~lsl~~~~~~~~--~iiVttP~~ 238 (341) T Consensus 304 I~~-------------rGW~~---~~efle~vk~sdYd~~iiEGVMgafTg~Ln~k~~YS~aeIak~lg~PvyivS~cnk 367 (482) T PRK06278 304 ISD-------------RGWME---PSEFLEFVKNSDYDNYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYIVSSCSK 367 (482) T ss_pred ECC-------------CCCCC---HHHHHHHHHCCCCCEEEEEHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCC T ss_conf 546-------------78768---99999997347987899850478888875057887689999855998899942555 Q ss_pred C----HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEE Q ss_conf 1----134566677764001221144554420245877886651247765899999847978988 Q gi|254780831|r 239 L----ALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLES 299 (341) Q Consensus 239 ~----s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~ 299 (341) T Consensus 368 sGIEgAfve~~ay~slLk~~Gv~v~giILNKvY--------n~~ife--kvk~~~~~~~i~~~~V 422 (482) T PRK06278 368 GGIEGAFVELMAYYSLLKEMGVNVAGIILNKVY--------NMEIFE--KVKKIASNLNINVIGV 422 (482) T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC--------CHHHHH--HHHHHHHHCCCEEEEE T ss_conf 660478999999999998669735889974112--------588999--9999998659529861 |
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0017 Score=43.20 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=86.1 Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCC--CCCCCCCEEECC Q ss_conf 65420102446665425789999898723-577506988224678765310002456311233445--766322303223 Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFL--KPKENYGIKIMS 169 (341) Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i--~p~~~~gi~~~s 169 (341) T Consensus 221 ~~~kvi~lV-GPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgA-----vE-QLktY--a~Il~iPv-----~vv~ 286 (432) T PRK12724 221 NQRKVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA-----IE-QLKRY--ADTMGMPF-----YPVK 286 (432) T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHH-----HH-HHHHH--HHHHCCCE-----EEEE T ss_conf 776299998-99998889999999999999749927999526653779-----99-99999--99859945-----9951 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--C-CCCH----HHHCCC---CCCEEEEECCCCC Q ss_conf 3343552210001342024789998675213777589974556444--2-1000----000022---3402674214431 Q gi|254780831|r 170 MASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--D-AHLT----IAQKIP---LSGVVIVSTPQDL 239 (341) Q Consensus 170 ~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d-~~ls----l~~~~~---~~~~iiVttP~~~ 239 (341) T Consensus 287 -----~~------------~el~~al~~---~~~DlILIDTA-GrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSa-Tt 344 (432) T PRK12724 287 -----DI------------KKFKETLAR---DGSELILIDTA-GYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSS-TS 344 (432) T ss_pred -----CH------------HHHHHHHHH---CCCCEEEEECC-CCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC-CC T ss_conf -----89------------999999985---69999999299-9897899999999999986366788517999978-89 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE----EE-CCCCHHHH Q ss_conf 1345666777640012211445544202458778866512477658999998479789----88-27998999 Q gi|254780831|r 240 ALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL----ES-VPFDMDVR 307 (341) Q Consensus 240 s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l----g~-IP~d~~i~ 307 (341) T Consensus 345 k~~dl~~ii~~f~~l~~--~~lIfT-------KLDET~---s~G~ilni~~~~~~PisYiT~GQ~VPdDI~~A 405 (432) T PRK12724 345 SYHHTLTVLKAYESLNY--RRILLT-------KLDEAD---FLGSFLELADTYSKSFTYLSVGQEVPFDILNA 405 (432) T ss_pred CHHHHHHHHHHHCCCCC--CEEEEE-------ECCCCC---CCCHHHHHHHHHCCCEEEEECCCCCCCCHHHC T ss_conf 98999999998426999--849997-------122779---86699999999889869980899797173335 |
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0077 Score=38.93 Aligned_cols=151 Identities=22% Similarity=0.293 Sum_probs=79.3 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCC-CCCEEECCCCCCCCC Q ss_conf 1024466654257899998987235775069882246787653100024563112334457663-223032233343552 Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKE-NYGIKIMSMASLVDE 176 (341) Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~-~~gi~~~s~g~l~~~ 176 (341) T Consensus 2 iai~-gH~gaGKTtL~EalL~~a-g~i~r~G~v~~g----~--tv~D~------------~~eE~~R~isi~~------- 54 (270) T cd01886 2 IGII-AHIDAGKTTTTERILYYT-GRIHKIGEVHGG----G--ATMDF------------MEQERERGITIQS------- 54 (270) T ss_pred EEEE-ECCCCCHHHHHHHHHHHC-CCCCCCCEECCC----C--CCCCC------------CHHHHHCCCEEEC------- T ss_conf 8999-689999889999999866-873558155389----7--55668------------4889876870733------- Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCC-CCCCEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 2100013420247899986752137775899745564442100000002-234026742144311345666777640012 Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKI-PLSGVVIVSTPQDLALIDVKRAISMYQKMN 255 (341) Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~-~~~~~iiVttP~~~s~~da~r~~~~~~~~~ 255 (341) T Consensus 55 -------------~----~~~~~w~~~~inliDTP-G~~DF~~e~~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~~~~~ 116 (270) T cd01886 55 -------------A----ATTCFWKDHRINIIDTP-GHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYN 116 (270) T ss_pred -------------C----EEEEEECCEEEEEEECC-CCHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCC T ss_conf -------------6----68999899899998696-96788999999987755599998467644263699998899849 Q ss_pred CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE-EECCC Q ss_conf 211445544202458778866512477658999998479789-88279 Q gi|254780831|r 256 IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL-ESVPF 302 (341) Q Consensus 256 ~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l-g~IP~ 302 (341) T Consensus 117 lP~i-~fINK----mDre~a--d-~-~~~l~~i~~~lg~~~vp~~~Pi 155 (270) T cd01886 117 VPRI-AFVNK----MDRTGA--D-F-FRVVEQIREKLGANPVPLQLPI 155 (270) T ss_pred CCEE-EEEEC----CCCCCC--C-C-HHHHHHHHHHHCCCEEEEEEEE T ss_conf 9989-99988----787788--7-1-6689999998589738898563 |
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0031 Score=41.51 Aligned_cols=158 Identities=16% Similarity=0.287 Sum_probs=84.5 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341) T Consensus 12 G~iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTE-GGLS~ER~~q~~~~~~~D~e~~~~-----~~iv~~~~~f~e 85 (223) T TIGR02237 12 GIITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTE-GGLSPERFKQIAEDRALDPERVLS-----NVIVFEVFDFDE 85 (223) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHCCCCCHHHHHC-----CEEEECCCCHHH T ss_conf 35889875899867899999999998618958999628-983289999986305889888841-----535523535678 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCC-CCEEEEECCCCCHHHHHHH----HHHH Q ss_conf 2210001342024789998675213777589974556444210000000223-4026742144311345666----7776 Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPL-SGVVIVSTPQDLALIDVKR----AISM 250 (341) Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~-~~~iiVttP~~~s~~da~r----~~~~ 250 (341) T Consensus 86 Q~~ai-------~~-~~~~~~~~-G~~~~LvVvDs~t~-------~Y-Rle~~~d~----nk~~~~~~~l~~Ql~~Ll~l 144 (223) T TIGR02237 86 QEVAI-------QK-TSKLIDRD-GDKADLVVVDSFTA-------LY-RLERSDDR----NKQISLNRELARQLTLLLSL 144 (223) T ss_pred HHHHH-------HH-HHHHHHCC-CCEEEEEEEECCHH-------HH-HHCCCCCC----HHHHHHHHHHHHHHHHHHHH T ss_conf 99999-------99-99998606-88331488815334-------54-20257860----25679999999999999999 Q ss_pred HHCCCCCHHHHHHHHCCCCCCCC-CCEEECCCC Q ss_conf 40012211445544202458778-866512477 Q gi|254780831|r 251 YQKMNIPIIGMIENMSYFLASDT-GKKYDLFGN 282 (341) Q Consensus 251 ~~~~~~~i~GiV~NMs~~~~~~~-~~~~~~fg~ 282 (341) T Consensus 145 Ark~~~AV--viTNQvy~d~~~gG~~~~~P~GG 175 (223) T TIGR02237 145 ARKKDLAV--VITNQVYTDVNNGGSETLRPLGG 175 (223) T ss_pred HHHCCCCE--EEEEEEEEEECCCCCCEEEECCC T ss_conf 87649978--99711588637797320100331 |
; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination. |
| >pfam07755 DUF1611 Protein of unknown function (DUF1611) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.052 Score=33.35 Aligned_cols=164 Identities=20% Similarity=0.321 Sum_probs=96.1 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341) T Consensus 114 ~rvl~vGTDcavGK~tTal~l~~~l~~~Gi~a~fiaTGQTG----ili-----------------~g~Gv~iDa----v~ 168 (302) T pfam07755 114 KRVLTVGTDCAVGKMTTALELERALRERGLNAAFVATGQTG----ILI-----------------AGYGVPLDA----VP 168 (302) T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCE----EEE-----------------ECCEEEECC----CH T ss_conf 78999605733407899999999999779984799727613----688-----------------152478432----24 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE-----CCCCCCCCCCHHHHCCCCCCEEEEECCCCC----------- Q ss_conf 2210001342024789998675213777589974-----556444210000000223402674214431----------- Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID-----MPPGTGDAHLTIAQKIPLSGVVIVSTPQDL----------- 239 (341) Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD-----~ppG~gd~~lsl~~~~~~~~~iiVttP~~~----------- 239 (341) T Consensus 169 ~D--------FvaGavE~~v~~~~-~~~d~iiIEGQgSL~hP~y~gvsl~lL~Gs~Pd~lIL~H~p~R~~~~~~~~~~iP 239 (302) T pfam07755 169 AD--------FVAGAVEALVLDAA-EEDDWIVIEGQGSLSHPAYSGVTLGLLHGSQPDALVLCHRPGRKHRRGFPHYPLP 239 (302) T ss_pred HH--------HHHHHHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCCEEEEECCCCCCEECCCCCCCCC T ss_conf 76--------67678999998645-4678799916543236656654598860789986999637898622787668899 Q ss_pred HHHHHHHHHHHHHCC--CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECC Q ss_conf 134566677764001--22114455442024587788665124776589999984797898827 Q gi|254780831|r 240 ALIDVKRAISMYQKM--NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVP 301 (341) Q Consensus 240 s~~da~r~~~~~~~~--~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP 301 (341) T Consensus 240 ~l~~~i~l~e~~a~~~~~~kvvgIslNt~~l-----~~~e---a~~~~~~~~~~~glPv~Dp~r 295 (302) T pfam07755 240 PLEEEIELIEALAGTTPPAKVVGISLNTRGL-----SEAE---AREAIERIEEELGLPVTDPVR 295 (302) T ss_pred CHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-----CHHH---HHHHHHHHHHHHCCCEEECCC T ss_conf 9899999999973647997399999557879-----9999---999999999998997471212 |
This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this. |
| >COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.041 Score=34.06 Aligned_cols=196 Identities=19% Similarity=0.289 Sum_probs=90.8 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCE-------ECCCC---------CCCCCCCC-CCCCC Q ss_conf 102446665425789999898723577506988224678765310-------00245---------63112334-45766 Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKL-------LKISG---------KVEISDKK-FLKPK 160 (341) Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~-------lg~~~---------~~~~~~~~-~i~p~ 160 (341) T Consensus 7 ~GT~S~---~GKS~~~aglcRi~~~~G~~V~PFK~QN--MsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLLKP~ 81 (486) T COG1492 7 QGTTSD---AGKSFLVAGLCRILARRGYRVAPFKSQN--MSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLLKPC 81 (486) T ss_pred EECCCC---CCHHHHHHHHHHHHHHCCCCCCCCHHHH--CCCCCEECCCCCEEEHHHHHHHHHCCCCCCCCCCCEEEEEC T ss_conf 721477---6546752453488873577547870654--34660787799687550667898739987434287787035 Q ss_pred CCCCEEECCCCCCCCCCCCC-CCCC--CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC--------HHHHCCCCCC Q ss_conf 32230322333435522100-0134--20247899986752137775899745564442100--------0000022340 Q gi|254780831|r 161 ENYGIKIMSMASLVDENVAM-IWRG--PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHL--------TIAQKIPLSG 229 (341) Q Consensus 161 ~~~gi~~~s~g~l~~~~~~~-~~rg--~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~l--------sl~~~~~~~~ 229 (341) T Consensus 82 sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~-~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~-dap 159 (486) T COG1492 82 SDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLE-RLDREYDVVVIEGAGSPAEINLRDRDIANMGVAEIA-DAP 159 (486) T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHCCCEEEEECCCCHHHCCCCCCCCCCEEEEHHC-CCC T ss_conf 888447999463446657178899988999999999998-754105589996379823227663661100220233-898 Q ss_pred EEEEECCCCC-HHHHHHHHHHHHH-CCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH Q ss_conf 2674214431-1345666777640-0122114455442024587788665124776589999984797898827998999 Q gi|254780831|r 230 VVIVSTPQDL-ALIDVKRAISMYQ-KMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR 307 (341) Q Consensus 230 ~iiVttP~~~-s~~da~r~~~~~~-~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~ 307 (341) T Consensus 160 vILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINk--FR----Gd~-~ll-~~gik~Le~~tg~~vlGv~P~~~~~~ 231 (486) T COG1492 160 VILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINK--FR----GDE-SLL-DPGLKWLEELTGVPVLGVLPYLKDAL 231 (486) T ss_pred EEEEEEECCCCEEEEEEEHHEECCHHHHCCEEEEEEEE--EC----CCH-HHH-HHHHHHHHHHHCCEEEEECCCCCCCC T ss_conf 89999511564541730212236876760014799963--17----987-887-45999999861974675652555455 Q ss_pred H Q ss_conf 7 Q gi|254780831|r 308 V 308 (341) Q Consensus 308 ~ 308 (341) T Consensus 232 ~ 232 (486) T COG1492 232 R 232 (486) T ss_pred C T ss_conf 7 |
|
| >COG3367 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.62 Score=26.22 Aligned_cols=169 Identities=20% Similarity=0.332 Sum_probs=92.4 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341) T Consensus 149 ~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqtg----il~-----------------~~~gvvvda---v~- 203 (339) T COG3367 149 KVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQTG----ILI-----------------ADDGVVVDA---VV- 203 (339) T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCEE----EEE-----------------ECCCEEECC---HH- T ss_conf 68999335632104388999999999709863157607604----688-----------------527467530---36- Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEE-----CCCCCCCCCCHHHHCCCCCCEEEEECCCCCHH-------H Q ss_conf 22100013420247899986752137-77589974-----55644421000000022340267421443113-------4 Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWG-QLDFLLID-----MPPGTGDAHLTIAQKIPLSGVVIVSTPQDLAL-------I 242 (341) Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~-~~D~liiD-----~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~-------~ 242 (341) T Consensus 204 ~D--------faAGave~~v~~-~~e~~~Dii~VEGQgsl~HP~y~-vtl~il~gs~PDavvL~H~P~r~~~~g~P~~ip 273 (339) T COG3367 204 MD--------FAAGAVESAVYE-AEEKNPDIIFVEGQGSLTHPAYG-VTLGILHGSAPDAVVLCHDPNRKYRDGFPEPIP 273 (339) T ss_pred HH--------HHHHHHHHHHHH-HHHCCCCEEEEECCCCCCCCCCC-CCHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC T ss_conf 88--------898888888887-65228987999065343477765-214330477897699974699752367987689 Q ss_pred HHHHHHHHHHCC-CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH Q ss_conf 566677764001-22114455442024587788665124776589999984797898827998999 Q gi|254780831|r 243 DVKRAISMYQKM-NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR 307 (341) Q Consensus 243 da~r~~~~~~~~-~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~ 307 (341) T Consensus 274 ~leevi~l~e~l~~a~Vvgi~lNtr-----~~dE~-~--are~~a~l~~efglP~~Dp~~~~~d~~ 331 (339) T COG3367 274 PLEEVIALYELLSNAKVVGIALNTR-----NLDEE-E--ARELCAKLEAEFGLPVTDPLRFGEDVL 331 (339) T ss_pred CHHHHHHHHHHCCCCCEEEEEECCC-----CCCHH-H--HHHHHHHHHHCCCCCCCCCCCCCHHHH T ss_conf 8899889998716785799992444-----46868-8--999999986403974226300214899 |
|
| >COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=378.27 Aligned_cols=243 Identities=42% Similarity=0.681 Sum_probs=202.6 Q ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC--CCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC Q ss_conf 999999999986067634235503222343332223--465420102446665425789999898723577506988224 Q gi|254780831|r 56 QSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNN--LNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD 133 (341) Q Consensus 56 ~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~--~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD 133 (341) T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD 95 (265) T COG0489 16 EEIPELLAKALAALLPKSTASEALRALRTNLKFAKVLRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDAD 95 (265) T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 32023332110135774117888864443201242234566618999758998756899999999999639938999674 Q ss_pred CCCCCCCCEECCCC---CCCCCCCCCCCCCCCCC-EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 67876531000245---63112334457663223-032233343552210001342024789998675213777589974 Q gi|254780831|r 134 VYGPSIPKLLKISG---KVEISDKKFLKPKENYG-IKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLID 209 (341) Q Consensus 134 i~~ps~~~~lg~~~---~~~~~~~~~i~p~~~~g-i~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD 209 (341) T Consensus 96 ~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~lsi~~~~~--~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID 173 (265) T COG0489 96 LRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLSILPLGP--VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIID 173 (265) T ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEEEECCC--CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 6698635540898655654113787114322026655047883288--99894677633899999999745688889996 Q ss_pred CCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHH Q ss_conf 55644421000000022340267421443113456667776400122114455442024587788665124776589999 Q gi|254780831|r 210 MPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEA 289 (341) Q Consensus 210 ~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a 289 (341) T Consensus 174 ~PP~~g~~d~~i~~~~~~-g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~-------~g~~~~~~ 245 (265) T COG0489 174 TPPGTGDADATVLQRIPD-GVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCG-------EGGGEKYA 245 (265) T ss_pred CCCCCCHHHHHHHHHCCC-EEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-------CCCHHHHH T ss_conf 999864277788751388-5999966773559999999999987499347999668666665557-------88523356 Q ss_pred HHHCCCEEEECCCCHHHHHH Q ss_conf 98479789882799899975 Q gi|254780831|r 290 EKIGIPFLESVPFDMDVRVL 309 (341) Q Consensus 290 ~~~~i~~lg~IP~d~~i~~a 309 (341) T Consensus 246 ~~~~-~~~g~~p~~~~~~~~ 264 (265) T COG0489 246 ERYG-PYLGSIPLDPSAREA 264 (265) T ss_pred HHHC-CCCCCCCCCHHHHCC T ss_conf 6511-102668867454413 |
|
| >CHL00175 minD septum-site determining protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=359.05 Aligned_cols=237 Identities=23% Similarity=0.375 Sum_probs=193.2 Q ss_pred CCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCC------C-----CCCC Q ss_conf 2234654201024466654257899998987235775069882246787653100024563112------3-----3445 Q gi|254780831|r 89 RNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEIS------D-----KKFL 157 (341) Q Consensus 89 ~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~------~-----~~~i 157 (341) T Consensus 7 ~~~~~m~kiIaV~s~KGGVGKTT~a~NLa~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~~i 86 (279) T CHL00175 7 TIVATMTRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVVYTAMEVLEGECRLDQALI 86 (279) T ss_pred HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEE T ss_conf 12259886999974899844899999999999978998899957899998753268666666747664078766430134 Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCC Q ss_conf 76632230322333435522100013420247899986752137775899745564442100000002234026742144 Q gi|254780831|r 158 KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQ 237 (341) Q Consensus 158 ~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~ 237 (341) T Consensus 87 ~~~~~~~l~ll~~~-------~~~~~~~~~~~~~~~ll~~l~~~~yDyiiID~ppgl~~~~~~a--l~aad~viIvttpe 157 (279) T CHL00175 87 RDKRWPNLSLLPIS-------KNRQRYNVTRKNMNMLVDSLKERNYDYILIDCPAGIDVGFINA--IAPAKEAIVVTTPE 157 (279) T ss_pred ECCCCCCEEEEECC-------CHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHH--HHHCCEEEEECCCC T ss_conf 25777877999789-------7054457419999999999972799999981899888999999--99789069978997 Q ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE Q ss_conf 31134566677764001221144554420245877886651247765899999847978988279989997502882179 Q gi|254780831|r 238 DLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV 317 (341) Q Consensus 238 ~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v 317 (341) T Consensus 158 ~~al~da~~~i~~~~~~~~~~~~lvvN~~---~~~~~~~~~~~~---~~~~~~~l~v~~lg~IP~D~~v~~a~~~G~Pvv 231 (279) T CHL00175 158 ITAIRDADRVAGLLEANGIYNIKLLVNRV---RPDMIKANDMMS---VRDVQEMLGIPLLGAIPEDENVIISTNRGEPLV 231 (279) T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCC---CCCCCCCCCCCC---HHHHHHHHCCCEEEECCCCHHHHHCCCCCEEEE T ss_conf 89999999999999975998621353356---455435455344---999999719934657678778986130690589 Q ss_pred EECCCCHHHHHHHHHHHHHHHHH Q ss_conf 97799989999999999999983 Q gi|254780831|r 318 VHNMNSATSEIYQEISDRIQQFF 340 (341) Q Consensus 318 ~~~p~s~~a~~~~~iA~~i~~~l 340 (341) T Consensus 232 ~~~P~S~~a~a~~~iA~~l~~~~ 254 (279) T CHL00175 232 LKKKLTLSGIAFENAARRLVGKQ 254 (279) T ss_pred EECCCCHHHHHHHHHHHHHHCCC T ss_conf 84999999999999999995787 |
|
| >TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=353.09 Aligned_cols=223 Identities=26% Similarity=0.419 Sum_probs=178.0 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-----CCCCC---CCCCCC-EE Q ss_conf 2010244666542578999989872357750698822467876531000245631123-----34457---663223-03 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-----KKFLK---PKENYG-IK 166 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-----~~~i~---p~~~~g-i~ 166 (341) T Consensus 1 r~I~iASGKGGtGKTT~tANLgVALA~~Gk~V~~~DADI~MANL~LiLgmE~~~VTLhDVLAGeA~i~DAIY~gp~GnV~ 80 (258) T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLVLDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPEGNVK 80 (258) T ss_pred CEEEEEECCCCCCHHHEEEHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEE T ss_conf 98899977889861400000778898609768999467667768988446888967522134456100110028898447 Q ss_pred ECCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHH Q ss_conf 22333435522-10001342024789998675213777589974556444210000000223402674214431134566 Q gi|254780831|r 167 IMSMASLVDEN-VAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVK 245 (341) Q Consensus 167 ~~s~g~l~~~~-~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~ 245 (341) T Consensus 81 V~PagvSLEg~rKA~~-------~~L~dV~~~i~-~~~D~lLIDAPAGL~~~a~--~Al~~a~elLLVvNPEi~SItDaL 150 (258) T TIGR01969 81 VIPAGVSLEGLRKADP-------DKLEDVLKEII-DDTDFLLIDAPAGLERDAV--TALAAADELLLVVNPEISSITDAL 150 (258) T ss_pred EECCCCCHHHCCCCCH-------HHHHHHHHHHH-CCCCEEEEECCCCCCHHHH--HHHHHCCCCEEEECCCHHHHHHHH T ss_conf 8506122100012683-------33289999872-0437788747898337899--999861866486676544677788 Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCCHH Q ss_conf 67776400122114455442024587788665124776589999984797898827998999750288217997799989 Q gi|254780831|r 246 RAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSAT 325 (341) Q Consensus 246 r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~~ 325 (341) T Consensus 151 K~k~va~~lGt~ilG~vlNRv~------~~~tel-~~~eiE~i---LevPVl~~vPEDP~VR~AAa~G~P~V~~~P~SpA 220 (258) T TIGR01969 151 KVKIVAEKLGTAILGVVLNRVT------RDKTEL-GREEIEAI---LEVPVLGVVPEDPEVRRAAAFGEPVVVYSPNSPA 220 (258) T ss_pred HHHHHHHHCCCCEEEEEEEECC------CCCCCC-CHHHHHHH---HCCCEEEEECCCHHHHHHHHCCCCEEEECCCCHH T ss_conf 9999987608832468996023------666637-88899988---4797389856984344564248536884799878 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999999999999 Q gi|254780831|r 326 SEIYQEISDRIQQ 338 (341) Q Consensus 326 a~~~~~iA~~i~~ 338 (341) T Consensus 221 A~A~~eLA~~l~G 233 (258) T TIGR01969 221 AQAFMELAAELAG 233 (258) T ss_pred HHHHHHHHHHHHC T ss_conf 9999999999718 |
In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. . |
| >pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=322.66 Aligned_cols=229 Identities=24% Similarity=0.243 Sum_probs=174.0 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC----CCC--------CCCCCCC Q ss_conf 2010244666542578999989872357750698822467876531000245631123----344--------5766322 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD----KKF--------LKPKENY 163 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~----~~~--------i~p~~~~ 163 (341) T Consensus 1 r~iai-~GKGGVGKTTtsvNLA~aLA~~GkrVlliDaD~~~~~~~~llg~~~~~~l~d~l~~~~~~~~~~~~~vi~~~~~ 79 (269) T pfam00142 1 RKIAI-YGKGGIGKSTTSQNTSAALAEMGKKVLIVGCDPKADSTRLILGGKAQPTIIDTLREKGLVEDVELEDVVKKGYG 79 (269) T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHEECCCC T ss_conf 95899-89997688999999999999879909998458998741444389888847877604677022407450133778 Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCCHHHHCCCCCCEEEEECCCCCHH Q ss_conf 3032233343552210001342024789998675213777589974556444--21000000022340267421443113 Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHLTIAQKIPLSGVVIVSTPQDLAL 241 (341) Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~lsl~~~~~~~~~iiVttP~~~s~ 241 (341) T Consensus 80 gv~~i~~~~-~e~~~~~~~~~--~~~~~~~l~~~~~~~~~DyiliD~~g~~~~~~~~~~i~~~-~A~~viiv~t~E~~al 155 (269) T pfam00142 80 GIRCVESGG-PEPGVGCAGRG--VITAIDLLEELGAYDDLDFVLYDVLGDVVCGGFAMPIREG-KAQEVYIVTSGEMMAL 155 (269) T ss_pred CCEEEECCC-CCCCCCCCHHH--HHHHHHHHHHHCCHHCCCEEEEECCCCEEECCCCCCHHHC-CCCEEEEEECCCHHHH T ss_conf 726886899-86563211078--9999999998210212888985336740243400533443-5887999828947899 Q ss_pred HHHHHHHHHH----HCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE Q ss_conf 4566677764----001221144554420245877886651247765899999847978988279989997502882179 Q gi|254780831|r 242 IDVKRAISMY----QKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV 317 (341) Q Consensus 242 ~da~r~~~~~----~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v 317 (341) T Consensus 156 ~~a~~l~~~i~~~~~~~~~~i~giv~n~~----------~~~~~~~~~~~~~~~~~~~~lg~IP~d~~v~eA~~~g~pv~ 225 (269) T pfam00142 156 YAANNICKGILKYAKSGGVRLGGLICNSR----------KVDDERELIDAFAEALGTQMIHFVPRDNIVQKAELNKQTVI 225 (269) T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCC----------CCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCEE T ss_conf 99999999999985057962789982686----------54115799999999819947997799826875423498179 Q ss_pred EECCCCHHHHHHHHHHHHHHHH Q ss_conf 9779998999999999999998 Q gi|254780831|r 318 VHNMNSATSEIYQEISDRIQQF 339 (341) Q Consensus 318 ~~~p~s~~a~~~~~iA~~i~~~ 339 (341) T Consensus 226 ~~~P~S~~A~ay~~LA~~il~~ 247 (269) T pfam00142 226 EYAPTCNQAKEYRELARKIIEN 247 (269) T ss_pred EECCCCHHHHHHHHHHHHHHHC T ss_conf 9899998999999999999858 |
|
| >PRK10818 cell division inhibitor MinD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=319.20 Aligned_cols=230 Identities=19% Similarity=0.310 Sum_probs=175.2 Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCC------CCC----CCCCCC-C Q ss_conf 54201024466654257899998987235775069882246787653100024563112------334----457663-2 Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEIS------DKK----FLKPKE-N 162 (341) Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~------~~~----~i~p~~-~ 162 (341) T Consensus 1 M~rvIaV~s~KGGVGKTT~avNLA~aLA~~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~~i~~~~~ 80 (270) T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT 80 (270) T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHEEECCCC T ss_conf 97499997899984189999999999997799689996899998887345767766666898836998588905446876 Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHH Q ss_conf 23032233343552210001342024789998675213777589974556444210000000223402674214431134 Q gi|254780831|r 163 YGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALI 242 (341) Q Consensus 163 ~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~ 242 (341) T Consensus 81 ~~l~ilpa~~-------~~~~~~~~~~~~~~~l~~l~~~~yDyIiID~ppgl~~~--~~~al~aad~vlvv~tpe~~al~ 151 (270) T PRK10818 81 ENLYILPASQ-------TRDKDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETG--ALMALYFADEAIITTNPEVSSVR 151 (270) T ss_pred CCEEEECCCC-------HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHH--HHHHHHHCCEEEEECCCCHHHHH T ss_conf 9979979996-------47675545999999999777659989998899986689--99999858968997389788998 Q ss_pred HHHHHHHHHHCCCC-------CH-HHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCC Q ss_conf 56667776400122-------11-44554420245877886651247765899999847978988279989997502882 Q gi|254780831|r 243 DVKRAISMYQKMNI-------PI-IGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGI 314 (341) Q Consensus 243 da~r~~~~~~~~~~-------~i-~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~ 314 (341) T Consensus 152 da~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~~~~~~~~~~~~lg~IP~d~~v~eA~~~G~ 225 (270) T PRK10818 152 DSDRILGILASKSRRAENGEEPIKEHLLLTRY--N-PGRVSRGDM---LSMEDVLEILRIKLVGVIPEDQSVLRASNQGE 225 (270) T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHCCEEEEEE--C-HHHCCHHHH---CCHHHHHHHCCCEEEEECCCCHHHHHHCCCCC T ss_conf 79999999998777653352010012588424--5-312321100---12999997328806998079746988522799 Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHH Q ss_conf 1799779998999999999999998 Q gi|254780831|r 315 PIVVHNMNSATSEIYQEISDRIQQF 339 (341) Q Consensus 315 P~v~~~p~s~~a~~~~~iA~~i~~~ 339 (341) T Consensus 226 Pvv-~~p~s~~a~Ay~~lA~~ll~~ 249 (270) T PRK10818 226 PVI-LDINADAGKAYADTVERLLGE 249 (270) T ss_pred CEE-ECCCCHHHHHHHHHHHHHHCC T ss_conf 879-899998999999999999568 |
|
| >TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-44 Score=312.02 Aligned_cols=227 Identities=26% Similarity=0.442 Sum_probs=169.0 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCC-----C------CCCCCCCCCCC Q ss_conf 201024466654257899998987235775069882246787653100024563112-----3------34457663223 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEIS-----D------KKFLKPKENYG 164 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~-----~------~~~i~p~~~~g 164 (341) T Consensus 2 ~viViTSGKGGVGKTTtTANlG~aLA~lG~kVvliD~DiGLRNLD~~lGLEnRivYt~vDVveG~C~l~qALikDKr~~N 81 (272) T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLEN 81 (272) T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH T ss_conf 58999817889773589899999999619828999547570345777423103545355432484211001001267523 Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHH Q ss_conf 03223334355221000134202478999867521377758997455644421000000022340267421443113456 Q gi|254780831|r 165 IKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDV 244 (341) Q Consensus 165 i~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da 244 (341) T Consensus 82 L~LLpAsQ~rdK~~--~~~E~~-~~lv~~Lk~~---~~FDYviIDcPAGIE--~GF~nAv~~Ad~AiVVttPEvsavRDA 153 (272) T TIGR01968 82 LYLLPASQTRDKDA--VTPEQM-KKLVNELKEE---EHFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDA 153 (272) T ss_pred HHHHHHHHCCCCCC--CCHHHH-HHHHHHHHHC---CCCEEEEEECCCCHH--HHHHHHHHHCCEEEEEECCCCCCHHHH T ss_conf 56636530236134--697789-9999998543---793079973787743--568998752683589877874510025 Q ss_pred HHHHHHHHCCC-CCH------HHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE Q ss_conf 66777640012-211------44554420245877886651247765899999847978988279989997502882179 Q gi|254780831|r 245 KRAISMYQKMN-IPI------IGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV 317 (341) Q Consensus 245 ~r~~~~~~~~~-~~i------~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v 317 (341) T Consensus 154 DRvIGlLea~~~i~~~GEE~~~~LivNR---~rP~mV~~G~Ml---si~Dv~~~L~i~LiGviPeD~~iI~stN~GEP~v 227 (272) T TIGR01968 154 DRVIGLLEAKGNIEEKGEEVKIKLIVNR---LRPEMVKKGDML---SIDDVLEILSIPLIGVIPEDEEIIVSTNKGEPVV 227 (272) T ss_pred HHHHHHHCCCCCCCCCCCEEEEEEEEEC---CCHHHHHCCCCC---CHHHHHHHCCCCCEEEECCCCCEEEEECCCEEEE T ss_conf 5675242124554457764643477851---564774168982---7899998608861686329986576645614354 Q ss_pred EECCC-CHHHHHHHHHHHHHH Q ss_conf 97799-989999999999999 Q gi|254780831|r 318 VHNMN-SATSEIYQEISDRIQ 337 (341) Q Consensus 318 ~~~p~-s~~a~~~~~iA~~i~ 337 (341) T Consensus 228 l~~-~L~~~g~Af~~~ArRi~ 247 (272) T TIGR01968 228 LNK-KLSRAGKAFENIARRIL 247 (272) T ss_pred ECC-CCCHHHHHHHHHHHHHC T ss_conf 460-02616788999987534 |
In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation. |
| >cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=299.29 Aligned_cols=228 Identities=25% Similarity=0.285 Sum_probs=169.1 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC--------CCC---CCCCCCCC Q ss_conf 2010244666542578999989872357750698822467876531000245631123--------344---57663223 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD--------KKF---LKPKENYG 164 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~--------~~~---i~p~~~~g 164 (341) T Consensus 2 r~Iai~-GKGGVGKTTtavNLA~aLa~~GkkVlliDaDpq~~~t~~l~g~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~g 80 (270) T cd02040 2 RQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGFGG 80 (270) T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHEECCCCC T ss_conf 589997-9985778999999999999879949998657998513465299888828998875277765388961337677 Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH----CCCCCCEEEEECCCCCH Q ss_conf 03223334355221000134202478999867521377758997455644421000000----02234026742144311 Q gi|254780831|r 165 IKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQ----KIPLSGVVIVSTPQDLA 240 (341) Q Consensus 165 i~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~----~~~~~~~iiVttP~~~s 240 (341) T Consensus 81 v~~ip~~~~-~~~~~~~gr~~~~~~~ll~~l-~~~~~~~D~iliD~---lg~~~~~~~~~~i~~~~ad~viiv~t~e~~a 155 (270) T cd02040 81 IKCVESGGP-EPGVGCAGRGVITAINLLEEL-GAYEDDLDFVIYDV---LGDVVCGGFAMPIREGKAQEIYIVTSGEMMA 155 (270) T ss_pred CEEEECCCC-CCCCHHCCCCHHHHHHHHHHH-HHHHCCCCEEEEEC---CCCCCCCHHHCHHHHCCCCEEEEECCCCHHH T ss_conf 064105996-435121240078899999985-43440698899823---5633321232303553388799962881899 Q ss_pred HHHHH---HHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCE Q ss_conf 34566---6777640012-2114455442024587788665124776589999984797898827998999750288217 Q gi|254780831|r 241 LIDVK---RAISMYQKMN-IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPI 316 (341) Q Consensus 241 ~~da~---r~~~~~~~~~-~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~ 316 (341) T Consensus 156 l~~~~~l~k~i~~~~~~~~~~l~gvv~~~----------~~~~~~~~~~~~~~~~~~~~~l~~IP~d~~v~EA~~~g~pi 225 (270) T cd02040 156 LYAANNICKGILKYAKSGGVRLGGLICNS----------RNTDREDELIDAFAKRLGTQMIHFVPRDNVVQRAELRGKTV 225 (270) T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECC----------CCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCEE T ss_conf 99999999999999834697479998378----------66513789999999985995287779971787513429707 Q ss_pred EEECCCCHHHHHHHHHHHHHHHH Q ss_conf 99779998999999999999998 Q gi|254780831|r 317 VVHNMNSATSEIYQEISDRIQQF 339 (341) Q Consensus 317 v~~~p~s~~a~~~~~iA~~i~~~ 339 (341) T Consensus 226 ~~~~P~S~~A~ay~~LA~eii~~ 248 (270) T cd02040 226 IEYDPESKQADEYRELARKIVEN 248 (270) T ss_pred EEECCCCHHHHHHHHHHHHHHHC T ss_conf 99798998999999999999848 |
Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia. |
| >TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=261.04 Aligned_cols=232 Identities=17% Similarity=0.161 Sum_probs=166.2 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCC------CCCC---CCCCCCCCEE Q ss_conf 201024466654257899998987235775069882246787653100024563112------3344---5766322303 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEIS------DKKF---LKPKENYGIK 166 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~------~~~~---i~p~~~~gi~ 166 (341) T Consensus 2 kiIav~n~KGGVGKTT~avNLA~~La~~G~rVLlIDlDpQ~-~l~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (246) T TIGR03371 2 KVIAIVGIKGGVGRTTLTAALASALKLLGEPVLAIDLDPQN-LLRLHFGMDWSVRDGWARALLAGEDWRAAAYRSSDGVL 80 (246) T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CHHHHCCCCCCCCCCHHHHHHCCCCHHHHHEECCCCEE T ss_conf 39999759998549999999999999689978999759998-50322488875345699998279988895255789828 Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHH Q ss_conf 22333435522100013420247899986752137775899745564442100000002234026742144311345666 Q gi|254780831|r 167 IMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKR 246 (341) Q Consensus 167 ~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r 246 (341) T Consensus 81 ~ip~~~~~~~~~~~~~~-~-~~~~l~~~l~~l~~~~~D~viiD~pp~l~~~--~~~al~aad~vlipv~~~~~s~~~~~~ 156 (246) T TIGR03371 81 FLPYGTLSADEREAYQA-H-DAGWLARLLQQLDLAARDWVLIDLPRGPSPI--TDQALAAADLVLVVVNADAACYATLHQ 156 (246) T ss_pred EEECCCCCHHHHHHHCC-C-CHHHHHHHHHHHCCCCCCEEEEECCCCCCHH--HHHHHHHCCEEEEEECCCHHHHHHHHH T ss_conf 97089847778987604-4-7899999998630367988999489987499--999999889479981899899999999 Q ss_pred HHHHHHCCCC--CHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE-EECCCCHHHHHHHCCCCCEEEECCCC Q ss_conf 7776400122--11445544202458778866512477658999998479789-88279989997502882179977999 Q gi|254780831|r 247 AISMYQKMNI--PIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL-ESVPFDMDVRVLSDLGIPIVVHNMNS 323 (341) Q Consensus 247 ~~~~~~~~~~--~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l-g~IP~d~~i~~a~~~g~P~v~~~p~s 323 (341) T Consensus 157 ~~~~~~~~~~~~~~~~iv~n~~-------~~~~~~-~~~~~~~l~~~~~~~~~~~~I~~~~~v~eA~~~g~pv~~~~p~S 228 (246) T TIGR03371 157 LALALLARSVPPDGIHYLINQF-------QPARQL-SRDVRAVLRATLGSRLLPMFVHRDEAVAEALARGTPVFNYAPHS 228 (246) T ss_pred HHHHHHHHCCCCCCEEEEEECC-------CCCCHH-HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEECCCC T ss_conf 9999998427767517886302-------640158-99999999997498816226899779999997699826699589 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 89999999999999983 Q gi|254780831|r 324 ATSEIYQEISDRIQQFF 340 (341) Q Consensus 324 ~~a~~~~~iA~~i~~~l 340 (341) T Consensus 229 ~aa~~y~~LA~~ll~~l 245 (246) T TIGR03371 229 QAAHDIRTLAFWLLTKL 245 (246) T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 89999999999999963 |
Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined. |
| >COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=260.43 Aligned_cols=228 Identities=26% Similarity=0.398 Sum_probs=166.9 Q ss_pred CCCEECCCCCCCCCHHHHHHHH-HHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCC-CCC----CCCC----CCCCCCC Q ss_conf 4201024466654257899998-9872357750698822467876531000245631-123----3445----7663223 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNI-ACALKNKGKNVAILDADVYGPSIPKLLKISGKVE-ISD----KKFL----KPKENYG 164 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nL-a~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~-~~~----~~~i----~p~~~~g 164 (341) T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~g 81 (262) T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQDG 81 (262) T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHCCCCHHHEEEECCCCC T ss_conf 78999984588756898998699999964897699996588887288885888885509999707787768023157689 Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHH Q ss_conf 03223334355221000134202478999867521377758997455644421000000022340267421443113456 Q gi|254780831|r 165 IKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDV 244 (341) Q Consensus 165 i~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da 244 (341) T Consensus 82 l~vipg~~~~~~~~~~~--~~~~~~~~~~l-~----~~~D~iliD~~aGl~~~~~~~--~~~sd~~viVt~pe~~si~~A 152 (262) T COG0455 82 LYVLPGGSGLEDLAKLD--PEDLEDVIKEL-E----ELYDYILIDTGAGLSRDTLSF--ILSSDELVIVTTPEPTSITDA 152 (262) T ss_pred EEEEECCCCHHHHHHCC--HHHHHHHHHHH-H----HCCCEEEEECCCCCCHHHHHH--HHHCCCEEEEECCCCCHHHHH T ss_conf 89960788768886169--88899999998-7----529999996899966888999--873681799927985208999 Q ss_pred HHHHHHHHCCCCCHHH--HHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCC Q ss_conf 6677764001221144--55442024587788665124776589999984797898827998999750288217997799 Q gi|254780831|r 245 KRAISMYQKMNIPIIG--MIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMN 322 (341) Q Consensus 245 ~r~~~~~~~~~~~i~G--iV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~ 322 (341) T Consensus 153 ~~~i~~~~~~~~~~~~~~vV~N~v~----~~~e~~~~~--~~~~~~~--~~~~~~~~i~~~~~v~~a~~~g~p~~~~~p~ 224 (262) T COG0455 153 YKTIKILSKLGLDLLGRRVVLNRVR----STKEGVDVA--ALLIQVV--KQVPVLQVIPFDPEVRRALAEGKPIVLYSPN 224 (262) T ss_pred HHHHHHHHHCCCCCCCCEEEEEECC----CCCCHHHHH--HHHHHHH--HHCCCEEEECCCHHHHHHHHCCCCEEEECCC T ss_conf 9999999973876433158997036----666546789--9999999--7077434715675789986249867972889 Q ss_pred CHHHHHHHHHHHHHHHH Q ss_conf 98999999999999998 Q gi|254780831|r 323 SATSEIYQEISDRIQQF 339 (341) Q Consensus 323 s~~a~~~~~iA~~i~~~ 339 (341) T Consensus 225 s~as~ai~~lA~~l~~~ 241 (262) T COG0455 225 SKASQAIKELAAKLAGL 241 (262) T ss_pred CHHHHHHHHHHHHHHCC T ss_conf 78999999999998605 |
|
| >PRK13231 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=253.74 Aligned_cols=229 Identities=19% Similarity=0.190 Sum_probs=173.2 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC---------CCCCCCCCCCCE Q ss_conf 42010244666542578999989872357750698822467876531000245631123---------344576632230 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD---------KKFLKPKENYGI 165 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---------~~~i~p~~~~gi 165 (341) T Consensus 2 m~~iAiy-GKGGIGKSTt~~NlaaalA~-g~rVl~igcDpk~dst~~L~G~~-~ptvl~~l~~~~~~~~~dvv~~g~~gi 78 (264) T PRK13231 2 LKKIAIY-GKGGIGKSTTVSNMAAAYSS-DNSTLVIGCDPKADTTRTLVGKR-IPTVLDTLKDNRQPELEDIIYEGYNNT 78 (264) T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCCHHHHHHCCC-CCCHHHHHHHCCCCCHHHHEEECCCCE T ss_conf 4289997-89854788899999999987-99779985688850246761999-883889863127777656312178984 Q ss_pred EECCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHH-HCCCCCCEEEEECCCCCHHHH Q ss_conf 32233343552210001342024-7899986752137775899745564442100000-002234026742144311345 Q gi|254780831|r 166 KIMSMASLVDENVAMIWRGPMVQ-SAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIA-QKIPLSGVVIVSTPQDLALID 243 (341) Q Consensus 166 ~~~s~g~l~~~~~~~~~rg~~~~-~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~-~~~~~~~~iiVttP~~~s~~d 243 (341) T Consensus 79 ~cvesGg-pepg~gcagrgi~~~~~lLe~~--~~~~~~~D~vl~Dvlgdvvcggfa~Pir~~~Adev~IVts~e~msLya 155 (264) T PRK13231 79 LCVESGG-PEPGVGCAGRGVIVAMNLLEKL--GVFDNDPDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYA 155 (264) T ss_pred EEEECCC-CCCCCCCCCCHHHHHHHHHHHH--CCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCEEEEEECCCHHHHHH T ss_conf 9973799-8877665652176898999872--642247987999435872056670455426698899994785899999 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCC Q ss_conf 66677764001221144554420245877886651247765899999847978988279989997502882179977999 Q gi|254780831|r 244 VKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNS 323 (341) Q Consensus 244 a~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s 323 (341) T Consensus 156 AnnI~~~i~~~~~rl~GiI~N~-----r~~~~e-----~~iv~~fa~~~g~~vl~~IPr~~~V~~ae~~~~tVie~~P~S 225 (264) T PRK13231 156 ANNIAKGIKKLKGKLGGIICNC-----RNVKNE-----VEIVSEFASLIGSRIIGIIPRSNLVQESELKASTVVETFPES 225 (264) T ss_pred HHHHHHHHHHHCCCCCEEEEEC-----CCCCCH-----HHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCEEEEECCCC T ss_conf 9999999999546442089606-----898877-----999999999719968996689478888886297589979898 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 8999999999999998 Q gi|254780831|r 324 ATSEIYQEISDRIQQF 339 (341) Q Consensus 324 ~~a~~~~~iA~~i~~~ 339 (341) T Consensus 226 ~~A~~Yr~LA~~I~~~ 241 (264) T PRK13231 226 SQASIYSELANNIMNN 241 (264) T ss_pred HHHHHHHHHHHHHHHC T ss_conf 8999999999999858 |
|
| >PRK13230 nitrogenase reductase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=253.55 Aligned_cols=231 Identities=21% Similarity=0.221 Sum_probs=164.1 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-----------------CC--- Q ss_conf 2010244666542578999989872357750698822467876531000245631123-----------------34--- Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-----------------KK--- 155 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-----------------~~--- 155 (341) T Consensus 2 ~~ia~y-GKGGVGKTTTavNLAaALA~~GkkVLlID~DPqgnaTs~L~~g~~~~tv~d~~~~~~~~~~~l~~~~~~~~~~ 80 (292) T PRK13230 2 KQIAFY-GKGGIGKSTTVCNLAAALSKSGKKVIVVGCDPKHDCTSNLRGGEDIPTVLDVLREKGIDKLGIETIIRENLLK 80 (292) T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCC T ss_conf 679991-7998578989999999999879959997767977542530159877529999986175422233320324465 Q ss_pred --CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHH-HCCCCCCEEE Q ss_conf --4576632230322333435522100013420247899986752137775899745564442100000-0022340267 Q gi|254780831|r 156 --FLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIA-QKIPLSGVVI 232 (341) Q Consensus 156 --~i~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~-~~~~~~~~ii 232 (341) T Consensus 81 ~~dii~~~~~gv~~ve~g~-~~~g~g~~gr~~~~~~~ll~~~~~~~~~~~D~vl~D~lg~~~~~g~~~p~~~~~Ad~VlI 159 (292) T PRK13230 81 KEDIIYEGFNGIYCVEAGG-PKPGYGCAGRGVIVVIDLLKKMNVFEELGVDVVLYDVLGDVVCGGFAMPLRMGLADQIYV 159 (292) T ss_pred HHHEEECCCCCEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCEEEECCCCCCCCCCCCCCCHHCCCCEEEE T ss_conf 2322222678627861689-876641131478999999998131233087657503435566464215620201898999 Q ss_pred EECCCCCHHHHH---HHHHHHHHC-CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHH Q ss_conf 421443113456---667776400-1221144554420245877886651247765899999847978988279989997 Q gi|254780831|r 233 VSTPQDLALIDV---KRAISMYQK-MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRV 308 (341) Q Consensus 233 VttP~~~s~~da---~r~~~~~~~-~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~ 308 (341) T Consensus 160 p~q~E~~ALeg~~~l~~tI~~~~~~~~~~l~Giv~n~----------r~~l~~~~vv~e~~~~fg~~v~~~IPrnv~l~E 229 (292) T PRK13230 160 VTSSDYMALYAANNICKGIKQFAKRGGSTLGGIIYNV----------RGSMDAFDIVSEFASKLNTNIIGKVPNSNIINE 229 (292) T ss_pred EECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC----------CCCCCHHHHHHHHHHHHCCEEEEECCCCCHHHH T ss_conf 7273899999999999999999845797579999708----------988647899999999829915996799606341 Q ss_pred HHCCCCCEEEECCCCHHHHHHHHHHHHHHH Q ss_conf 502882179977999899999999999999 Q gi|254780831|r 309 LSDLGIPIVVHNMNSATSEIYQEISDRIQQ 338 (341) Q Consensus 309 a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341) T Consensus 230 Aps~G~pvi~ydP~S~gA~aY~~LA~ei~e 259 (292) T PRK13230 230 AEIDGKTAIEYAPDSEISKIYRELAEKIYE 259 (292) T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 430498248979899789999999999996 |
|
| >COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=249.27 Aligned_cols=227 Identities=23% Similarity=0.380 Sum_probs=161.6 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC------CC-----CCCCCCCC Q ss_conf 42010244666542578999989872357750698822467876531000245631123------34-----45766322 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD------KK-----FLKPKENY 163 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~------~~-----~i~p~~~~ 163 (341) T Consensus 2 ~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~~ 81 (272) T COG2894 2 ARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRLE 81 (272) T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHHCCCCCC T ss_conf 64999944888767431067789999973985999966767204466643420156540134447663656764035678 Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHH Q ss_conf 30322333435522100013420247899986752137775899745564442100000002234026742144311345 Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALID 243 (341) Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~d 243 (341) T Consensus 82 nL~lLPAsQtrdKdalt--~E~-v~~vv~eL-~~---~~fDyIi~DsPAGIE--~G~~~A~~~Ad~AiVVtnPEvSsVRD 152 (272) T COG2894 82 NLFLLPASQTRDKDALT--PEG-VKKVVNEL-KA---MDFDYIIIDSPAGIE--QGFKNAVYFADEAIVVTNPEVSSVRD 152 (272) T ss_pred CEEECCCCCCCCCCCCC--HHH-HHHHHHHH-HH---CCCCEEEECCCCHHH--HHHHHHHHCCCEEEEECCCCCCCCCC T ss_conf 52661443236722279--999-99999999-76---699889964840677--88886541026379974887554234 Q ss_pred HHHHHHHHHCCCC-------CHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCE Q ss_conf 6667776400122-------114455442024587788665124776589999984797898827998999750288217 Q gi|254780831|r 244 VKRAISMYQKMNI-------PIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPI 316 (341) Q Consensus 244 a~r~~~~~~~~~~-------~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~ 316 (341) T Consensus 153 sDRiiGlLesk~~rae~~~~~~~~llvnR---~~p~~v~~GeMl---sv~Dv~~iL~i~liGiiPed~~Vi~asN~GePv 226 (272) T COG2894 153 SDRIIGLLESKSRRAEIGEEPKEHLLLNR---YRPEMVKRGEML---SVEDVLEILSIPLIGVIPEDQDVLRASNKGEPV 226 (272) T ss_pred CHHHEEEHHCCCCHHHCCCCCCCEEEEEC---CCHHHHCCCCCC---CHHHHHHHHCCCEEEEECCCHHHEEECCCCCCE T ss_conf 11220201214542330776663489971---688881157725---399999974774477604853330004788876 Q ss_pred EEECCCCHHHHHHHHHHHHHH Q ss_conf 997799989999999999999 Q gi|254780831|r 317 VVHNMNSATSEIYQEISDRIQ 337 (341) Q Consensus 317 v~~~p~s~~a~~~~~iA~~i~ 337 (341) T Consensus 227 ~l~-~~~~a~~Ay~d~arRll 246 (272) T COG2894 227 ILD-DNSDAGKAYRDIARRLL 246 (272) T ss_pred EEC-CCCHHHHHHHHHHHHHH T ss_conf 757-87517799999999970 |
|
| >PRK13232 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=242.01 Aligned_cols=228 Identities=21% Similarity=0.248 Sum_probs=163.8 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC-----------CCCCCCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233-----------4457663223 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK-----------KFLKPKENYG 164 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~-----------~~i~p~~~~g 164 (341) T Consensus 2 ~~iaiy-GKGGVGKSTTt~NLaAALA~~GkkVL~IgcDPk~dsT~~l~gg~~~~tvld~l~~~~~~~~~l~~v~~~g~~g 80 (273) T PRK13232 2 RQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGFGD 80 (273) T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHEEECCCCC T ss_conf 579997-9986658878999999999779969998978844277788589988879999986185656366615428897 Q ss_pred EEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCH-HH---HCCCCCCEEEEECCCCCH Q ss_conf 03223334355221000134202478999867521377758997455644421000-00---002234026742144311 Q gi|254780831|r 165 IKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLT-IA---QKIPLSGVVIVSTPQDLA 240 (341) Q Consensus 165 i~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~ls-l~---~~~~~~~~iiVttP~~~s 240 (341) T Consensus 81 v~cve~gg-p~~g~gcagrgii~~~~lle~l~-~~~~~~Dyvl~Dvlgd---vvcggfa~P~~~~~A~evlIVts~E~~s 155 (273) T PRK13232 81 IKCVESGG-PEPGVGCAGRGIITSIGLLENLG-AYTDDLDYVFYDVLGD---VVCGGFAMPIREGKAKEIYIVASGELMA 155 (273) T ss_pred EEEEECCC-CCCCCCCCCHHHHHHHHHHHHCC-CCCCCCCEEEEECCCC---CCCCCCCCCCCCCCCCEEEEEECCCHHH T ss_conf 38986899-87676545304788888999708-3214798899941473---3236531442016576899980760888 Q ss_pred HHHHH---HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEE Q ss_conf 34566---677764001221144554420245877886651247765899999847978988279989997502882179 Q gi|254780831|r 241 LIDVK---RAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIV 317 (341) Q Consensus 241 ~~da~---r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v 317 (341) T Consensus 156 lyaannI~k~i~~~~~~~~rl~GiI~n~r~----~~~------~~e~v~~fa~~~g~~vi~~IPr~~~v~~A~~~g~tvi 225 (273) T PRK13232 156 IYAANNICKGLAKFAKGGARLGGIICNSRN----VDG------ERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVI 225 (273) T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEEECCC----CCC------HHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCEEE T ss_conf 999999999999996218850148850557----763------8999999999719966997899778876487298358 Q ss_pred EECCCCHHHHHHHHHHHHHHHH Q ss_conf 9779998999999999999998 Q gi|254780831|r 318 VHNMNSATSEIYQEISDRIQQF 339 (341) Q Consensus 318 ~~~p~s~~a~~~~~iA~~i~~~ 339 (341) T Consensus 226 e~~P~S~~A~aY~~LA~~I~~~ 247 (273) T PRK13232 226 DFDPESNQAKEYLTLAHNVQNN 247 (273) T ss_pred EECCCCHHHHHHHHHHHHHHHC T ss_conf 9799997999999999999858 |
|
| >COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=232.93 Aligned_cols=225 Identities=29% Similarity=0.441 Sum_probs=162.9 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCC----------CCCCCCC--------- Q ss_conf 201024466654257899998987235775069882246787653100024563----------1123344--------- Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV----------EISDKKF--------- 156 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~----------~~~~~~~--------- 156 (341) T Consensus 2 m~vAV~sGKGGtGKTTva~~la~~l~~~-~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~v 80 (284) T COG1149 2 MQVAVASGKGGTGKTTVAANLAVLLGDK-YKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAEV 80 (284) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCHHHCCCCCCHHHH T ss_conf 2799963688777022899999983665-224777657789986167445011356778750460375774301726876 Q ss_pred ---------------CCCCCCCCE--------------EECCCCCCC----CCCCCCCCC----C-CCHHHHHHHHHHHH Q ss_conf ---------------576632230--------------322333435----522100013----4-20247899986752 Q gi|254780831|r 157 ---------------LKPKENYGI--------------KIMSMASLV----DENVAMIWR----G-PMVQSAIMHMLHNV 198 (341) Q Consensus 157 ---------------i~p~~~~gi--------------~~~s~g~l~----~~~~~~~~r----g-~~~~~~l~~~l~~~ 198 (341) T Consensus 81 C~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~~~~~g~~li~g~l~vGe~~s~~lV~~~kk~a 160 (284) T COG1149 81 CRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKHA 160 (284) T ss_pred CCCCEEEECCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHH T ss_conf 78880897378860028020267663332478765554320003899987689963688744678444513789998755 Q ss_pred CCCC-CCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEE Q ss_conf 1377-758997455644421000000022340267421443113456667776400122114455442024587788665 Q gi|254780831|r 199 VWGQ-LDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKY 277 (341) Q Consensus 199 ~w~~-~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~ 277 (341) T Consensus 161 ~--E~~~~~IIDsaaG~gCpVi~s--l~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr-----------~ 224 (284) T COG1149 161 K--ELADLLIIDSAAGTGCPVIAS--LKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINR-----------Y 224 (284) T ss_pred H--HHCCEEEEECCCCCCCHHHHH--HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEEEC-----------C T ss_conf 6--532125885799789717776--4168779998168852366899999999983995-4999966-----------7 Q ss_pred ECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHH Q ss_conf 124776589999984797898827998999750288217997799989999999999999983 Q gi|254780831|r 278 DLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQFF 340 (341) Q Consensus 278 ~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~~l 340 (341) T Consensus 225 ~~g~s-~ie~~~~e~gi~il~~IPyd~~i~~~~~~g~~~~~--~~~k~~~~~~~~~~~~~~~~ 284 (284) T COG1149 225 NLGDS-EIEEYCEEEGIPILGEIPYDKDIPEAYVNGEPFVE--PDSKEAEAILEEAEKLKEFI 284 (284) T ss_pred CCCCH-HHHHHHHHCCCCEEEECCCCHHHHHHHHCCCCCCC--CCCHHHHHHHHHHHHHHCCC T ss_conf 77720-89998887399726878864258999857885313--55268899999999987029 |
|
| >PRK13233 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=231.34 Aligned_cols=227 Identities=21% Similarity=0.223 Sum_probs=158.6 Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCCCCEECCCCCCCCCCC------CC-----CCCCC Q ss_conf 54201024466654257899998987235-77506988224678765310002456311233------44-----57663 Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKN-KGKNVAILDADVYGPSIPKLLKISGKVEISDK------KF-----LKPKE 161 (341) Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~-~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~------~~-----i~p~~ 161 (341) T Consensus 1 m~~~iaiy-GKGGIGKSTTt~NLaaALA~l~GkrVl~IgcDPk~dST~~l~g~~~~~tv~d~l~~~~~~~~~~e~ii~~g 79 (275) T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAHFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275) T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHHHCC T ss_conf 97389998-99854465459999999996479889997978876136776089878839999986288755388887537 Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--CCCCCCEEEEECCCCCCCCCCH-HHH---CCCCCCEEEEEC Q ss_conf 2230322333435522100013420247899986752--1377758997455644421000-000---022340267421 Q gi|254780831|r 162 NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV--VWGQLDFLLIDMPPGTGDAHLT-IAQ---KIPLSGVVIVST 235 (341) Q Consensus 162 ~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~--~w~~~D~liiD~ppG~gd~~ls-l~~---~~~~~~~iiVtt 235 (341) T Consensus 80 ~~gv~cVEaGg-p~pG~gcagrgii~~---~~lle~~~~~~~~~D~Vl~DvLGd---VvcGgFa~Pir~~~AdeV~IVts 152 (275) T PRK13233 80 FKGIRCVESGG-PEPGVGCAGRGVITA---ITLMEEHGAYEDDLDFVFFDVLGD---VVCGGFAMPIRDGKAQEVYIVAS 152 (275) T ss_pred CCCCEEEECCC-CCCCCCCCCCCHHHH---HHHHHHHCCCCCCCCEEEEECCCC---CCCCCCCCCCCCCCCCEEEEEEC T ss_conf 89857986899-986665576312358---888998097434688899841561---10555103431366888999946 Q ss_pred CCCCHHHHHHHHH---HH-HHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHC Q ss_conf 4431134566677---76-4001221144554420245877886651247765899999847978988279989997502 Q gi|254780831|r 236 PQDLALIDVKRAI---SM-YQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSD 311 (341) Q Consensus 236 P~~~s~~da~r~~---~~-~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~ 311 (341) T Consensus 153 ~E~msL~aannI~~~l~~~~~~~~~~l~Gii~N~r----~~-~-----~e~~~v~~fa~~ig~~vi~~IPr~~~V~~Ae~ 222 (275) T PRK13233 153 GEMMALYAANNICKGLVKYAEQSGVRLGGIICNSR----NV-D-----GELELLEEFTDAIGTQLIHFVPRDNIVQKAEF 222 (275) T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECC----CC-C-----CHHHHHHHHHHHHCCCEEEECCCCHHHHHHHH T ss_conf 83799999999999999985058963899997178----88-6-----07999999999859957997789778887787 Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHH Q ss_conf 882179977999899999999999999 Q gi|254780831|r 312 LGIPIVVHNMNSATSEIYQEISDRIQQ 338 (341) Q Consensus 312 ~g~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341) T Consensus 223 ~~~tVie~~P~S~~A~~Y~~LAk~I~~ 249 (275) T PRK13233 223 NKKTVVEFDPTCNQAHEYKELARKIIE 249 (275) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 397679989999799999999999985 |
|
| >PRK13235 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=226.87 Aligned_cols=227 Identities=20% Similarity=0.199 Sum_probs=156.4 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-------CCCCCCC---CCCCE Q ss_conf 2010244666542578999989872357750698822467876531000245631123-------3445766---32230 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-------KKFLKPK---ENYGI 165 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-------~~~i~p~---~~~gi 165 (341) T Consensus 2 ~~iaiy-GKGGVGKSTtt~NLaAALA~~GkkVl~IgcDPk~dsT~~L~gg~~~~tvld~l~~~~~~~~ledvi~~g~~gi 80 (274) T PRK13235 2 RKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGLQQKTVLDTLREEGEDVELEDIIKEGYGNT 80 (274) T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHEEECCCCE T ss_conf 679997-9985547678999999999789979998989845366787389989978999986287767789443178981 Q ss_pred EECCCCCCCCCCCCCCCCCCCHH-HHHHHHHH-HHCCCCCCEEEEECCCCCCCCCCHHHH----CCCCCCEEEEECCCCC Q ss_conf 32233343552210001342024-78999867-521377758997455644421000000----0223402674214431 Q gi|254780831|r 166 KIMSMASLVDENVAMIWRGPMVQ-SAIMHMLH-NVVWGQLDFLLIDMPPGTGDAHLTIAQ----KIPLSGVVIVSTPQDL 239 (341) Q Consensus 166 ~~~s~g~l~~~~~~~~~rg~~~~-~~l~~~l~-~~~w~~~D~liiD~ppG~gd~~lsl~~----~~~~~~~iiVttP~~~ 239 (341) T Consensus 81 ~cveagg-p~pg~gcagrgii~~~~~L~~l~~~~~~-~~~DyVl~DvLG---dvvcggFa~pir~~~A~eV~IVts~E~~ 155 (274) T PRK13235 81 RCTESGG-PEPGVGCAGRGIITSVNLLEQLGAYDDE-WNLDYVFYDVLG---DVVCGGFAMPIRDGKAEEIYIVCSGEMM 155 (274) T ss_pred EEEECCC-CCCCCCCCCCHHHHHHHHHHHCCCCCCC-CCCCEEEEECCC---CCCCCCCCCCCCCCCCCEEEEEECCCHH T ss_conf 8986899-8756675763152589999881775433-577689981378---5312451155100658789999168368 Q ss_pred HHHHHH---HHHHHHHC-CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCC Q ss_conf 134566---67776400-12211445544202458778866512477658999998479789882799899975028821 Q gi|254780831|r 240 ALIDVK---RAISMYQK-MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIP 315 (341) Q Consensus 240 s~~da~---r~~~~~~~-~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P 315 (341) T Consensus 156 AL~aannI~k~i~~~~~~~~~~l~Gii~N~r~----------~~~~~~~v~~fa~~~g~~vi~~IPr~~~V~~Ae~~~~t 225 (274) T PRK13235 156 AMYAANNICKGILKYADAGGVRLGGLICNSRK----------VDNEREMIEELARKLGTQMIHFVPRDNMVQRAEINRKT 225 (274) T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC----------CCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHCCCE T ss_conf 99999999999999974379548899973677----------87578999999997499369975894588999873977 Q ss_pred EEEECCCCHHHHHHHHHHHHHHH Q ss_conf 79977999899999999999999 Q gi|254780831|r 316 IVVHNMNSATSEIYQEISDRIQQ 338 (341) Q Consensus 316 ~v~~~p~s~~a~~~~~iA~~i~~ 338 (341) T Consensus 226 Vie~~P~S~~A~~Yr~LA~~I~~ 248 (274) T PRK13235 226 VIDYDPTHGQADEYRALARKIDE 248 (274) T ss_pred EEEECCCCHHHHHHHHHHHHHHH T ss_conf 89978998799999999999983 |
|
| >pfam06564 YhjQ YhjQ protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=229.46 Aligned_cols=227 Identities=15% Similarity=0.095 Sum_probs=144.4 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCC--CC----CCC----CCCCCCCCCCE Q ss_conf 201024466654257899998987235775069882246787653100024563--11----233----44576632230 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV--EI----SDK----KFLKPKENYGI 165 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~--~~----~~~----~~i~p~~~~gi 165 (341) T Consensus 2 kiIai~s~KGGVGKTT~t~nLa~aLa~~G~rVLlID~Dpq~-~l~~~~g~~~~~~~g~~~~~l~~~~~~~~~~~~-~~gl 79 (244) T pfam06564 2 AVLALQGVRGGVGTTSLTAALGWALQQLGESVLVIDASPDN-LLRLHFNVDFDHSDGWARAELDGRPWRDAALRY-TPGL 79 (244) T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHEEE-CCCE T ss_conf 29999669998619999999999999779958999689874-210235888643441489987599777744452-6975 Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHH Q ss_conf 322333435522100013420247899986752-1377758997455644421000000022340267421443113456 Q gi|254780831|r 166 KIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV-VWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDV 244 (341) Q Consensus 166 ~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~-~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da 244 (341) T Consensus 80 ~llP~g~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iliD~Pp~l~~--l~~~al~aad~vLv~v~~d~~s~~~- 156 (244) T pfam06564 80 DLLPFGQLTGAERENLQQLQPDLGAWAQRLQLLKASGQYRWILLDLPQGFSP--LTRQLLELADVTLAVVHADANCHIR- 156 (244) T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHH--HHHHHHHHCCCEEEEECCCHHHHHH- T ss_conf 8972899747899989865443799999876421357899999979999689--9999999769608996888589999- Q ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCCCH Q ss_conf 66777640012211445544202458778866512477658999998479789882799899975028821799779998 Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSA 324 (341) Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~ 324 (341) T Consensus 157 -----l~~~~~~~~~~ilvn~~--d-----~~~~l-~~d~~~~~~~~~~~~l~~~I~rd~~l~EA~a~g~pv~~yaP~S~ 223 (244) T pfam06564 157 -----LHQQALPAGCHLLINDF--R-----IGSQL-QDDLYQLWLQSQRRLLPIVVHRDEAMAEALAAKQPLGEYRPDSL 223 (244) T ss_pred -----HHHCCCCCCCEEEEECC--C-----HHHHH-HHHHHHHHHHHHCCCCCEEECCCCHHHHHHHCCCCHHHCCCCCH T ss_conf -----73233446774886424--5-----57689-99999999986087257550798829899867995545386998 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 9999999999999983 Q gi|254780831|r 325 TSEIYQEISDRIQQFF 340 (341) Q Consensus 325 ~a~~~~~iA~~i~~~l 340 (341) T Consensus 224 aA~dy~~LA~w~l~~~ 239 (244) T pfam06564 224 AAEEVLTLANWCLLHY 239 (244) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999864 |
This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function. |
| >cd02032 Bchl_like This family of proteins contains bchL and chlL | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-30 Score=218.79 Aligned_cols=218 Identities=21% Similarity=0.298 Sum_probs=150.9 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCC--CCCC---C-----CCCCC-----CC Q ss_conf 01024466654257899998987235775069882246787653100024563--1123---3-----44576-----63 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV--EISD---K-----KFLKP-----KE 161 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~--~~~~---~-----~~i~p-----~~ 161 (341) T Consensus 2 kiaiy-GKGGIGKSTttaNl~aaLA~~G~kVl~IgcD---pk~Dst~~L~g~~~~tvld~l~~~~~~~~~~~~~d~v~~g 77 (267) T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALAKRGKKVLQIGCD---PKHDSTFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEG 77 (267) T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCC---CCHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCHHHHHHCC T ss_conf 79997-7996578778999999999879959997789---9515567526988683999998608866641477875307 Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEEEECCCCCCC--CCCHHHHCCCCCCEEEEECCCC Q ss_conf 223032233343552210001342024789998675-2137775899745564442--1000000022340267421443 Q gi|254780831|r 162 NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHN-VVWGQLDFLLIDMPPGTGD--AHLTIAQKIPLSGVVIVSTPQD 238 (341) Q Consensus 162 ~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~-~~w~~~D~liiD~ppG~gd--~~lsl~~~~~~~~~iiVttP~~ 238 (341) T Consensus 78 ~~gv~cvEaGg-P~pg~Gcagrgi--~~~-~~lL~~l~~~~~~D~Vl~DvlgdVvcgGFa~pi---~~Ad~~~iVTs~e~ 150 (267) T cd02032 78 YGGVDCVEAGG-PPAGAGCGGYVV--GET-VKLLKELNLFEEYDVILFDVLGDVVCGGFAAPL---NYADYALIVTDNDF 150 (267) T ss_pred CCCCEEEECCC-CCCCCCCCCCCH--HHH-HHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCC---CCCCEEEEEECCCH T ss_conf 67845766589-999988776404--899-999987166434778999536654456656761---00688999956718 Q ss_pred CHHHHHHHHHHHHHC----CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCC Q ss_conf 113456667776400----1221144554420245877886651247765899999847978988279989997502882 Q gi|254780831|r 239 LALIDVKRAISMYQK----MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGI 314 (341) Q Consensus 239 ~s~~da~r~~~~~~~----~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~ 314 (341) T Consensus 151 ~sl~aAn~I~~~i~~~~~~~~~rl~GlI~Nr~-------~~------~~~i~~fa~~lg~~lig~VP~d~~V~~se~~g~ 217 (267) T cd02032 151 DSIFAANRIAAAVREKAKTYKVRLAGLIANRT-------DK------TDLIDKFVEAVGMPVLAVLPLIEDIRRSRVKGK 217 (267) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC-------CC------HHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCC T ss_conf 78999999999999975337976422787469-------85------789999999729946996699338899987398 Q ss_pred CEEEECCCCH----HHHHHHHHHHHHHH Q ss_conf 1799779998----99999999999999 Q gi|254780831|r 315 PIVVHNMNSA----TSEIYQEISDRIQQ 338 (341) Q Consensus 315 P~v~~~p~s~----~a~~~~~iA~~i~~ 338 (341) T Consensus 218 tvie~~p~~~~~s~~a~~Yr~LA~~i~~ 245 (267) T cd02032 218 TLFEMDESDEELAYRCDYYLLIADQLLA 245 (267) T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHH T ss_conf 6898489984378999999999999983 |
Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. |
| >PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-27 Score=200.45 Aligned_cols=217 Identities=23% Similarity=0.292 Sum_probs=148.0 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCC--CCCC---C-----CCCCC----- Q ss_conf 4201024466654257899998987235775069882246787653100024563--1123---3-----44576----- Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV--EISD---K-----KFLKP----- 159 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~--~~~~---~-----~~i~p----- 159 (341) T Consensus 2 ~~~iaiy-GKGGIGKSTttaNlsaALA~~GkkV~~IgcDPk~DsT---~~L~g~~~~tild~l~~~~~~~~~~~~ed~~~ 77 (269) T PRK13185 2 ALVLAVY-GKGGIGKSTTSSNLSAALAKLGKKVLQIGCDPKHDST---FTLTGKLVPTVIDILEEVDFHSEELRPEDFVF 77 (269) T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCH---HHCCCCCCCCHHHHHHHCCCCHHHCCHHHHHH T ss_conf 5399997-8995478889999999999769938998189973230---11259987878999974387602125667763 Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEEEECCCCCCCCCCHHHHCC-----CCCCEEEE Q ss_conf 63223032233343552210001342024789998675-2137775899745564442100000002-----23402674 Q gi|254780831|r 160 KENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHN-VVWGQLDFLLIDMPPGTGDAHLTIAQKI-----PLSGVVIV 233 (341) Q Consensus 160 ~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~-~~w~~~D~liiD~ppG~gd~~lsl~~~~-----~~~~~iiV 233 (341) T Consensus 78 ~G~~gv~cvEaGG-P~pG~GCaGrg--i~~~~~-~L~~~~~~~~~D~Vl~Dvlgd---Vv---CGGFa~Pi~~Ad~~~IV 147 (269) T PRK13185 78 EGYNGVDCVEAGG-PPAGTGCGGYV--VGETVK-LLKEHHLLDDYDVILFDVLGD---VV---CGGFAAPLQYADYALIV 147 (269) T ss_pred CCCCCCEEEECCC-CCCCCCCCCCC--HHHHHH-HHHHCCCCCCCCEEEEECCCC---CC---CCCCCCCHHCCCEEEEE T ss_conf 3767705664389-99987767643--189999-998728743378799953674---33---36555751008889999 Q ss_pred ECCCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHH Q ss_conf 2144311345666777640----012211445544202458778866512477658999998479789882799899975 Q gi|254780831|r 234 STPQDLALIDVKRAISMYQ----KMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVL 309 (341) Q Consensus 234 ttP~~~s~~da~r~~~~~~----~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a 309 (341) T Consensus 148 ts~e~~al~aAnnI~~~i~~~a~~~~~rl~GiI~Nr~-------~~------~d~v~~fa~~~g~~vl~~IP~~~~V~~s 214 (269) T PRK13185 148 TANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRS-------GG------TDQIDKFNERVGLRTLAHVPDLDAIRRS 214 (269) T ss_pred ECCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC-------CC------HHHHHHHHHHHCCCEEEECCCCHHHHHH T ss_conf 2530878999999999998653015853232576168-------83------7799999998699769978997889999 Q ss_pred HCCCCCEEEECCCCHHHH---HHHHHHHHHHH Q ss_conf 028821799779998999---99999999999 Q gi|254780831|r 310 SDLGIPIVVHNMNSATSE---IYQEISDRIQQ 338 (341) Q Consensus 310 ~~~g~P~v~~~p~s~~a~---~~~~iA~~i~~ 338 (341) T Consensus 215 e~~g~TviE~~p~~~~a~v~~~Yr~LA~~i~~ 246 (269) T PRK13185 215 RLKGKTLFEMEETDELEEVQNEYLRLADQLLA 246 (269) T ss_pred HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHH T ss_conf 87498678858998178999999999999982 |
|
| >PHA02518 ParA-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=200.77 Aligned_cols=203 Identities=20% Similarity=0.294 Sum_probs=139.3 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341) T Consensus 1 KIIav~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s~~-~w~~~r~-----~~~~~~~~-------~~------ 61 (211) T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSST-DWAEARE-----EGEPLIPV-------VR------ 61 (211) T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH-HHHHHCC-----CCCCCCCH-------HH------ T ss_conf 98999808999749999999999999789948999779996788-9998522-----68997401-------21------ Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHH--- Q ss_conf 22100013420247899986752137775899745564442100000002234026742144311345666777640--- Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQ--- 252 (341) Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~--- 252 (341) T Consensus 62 -------~~~~~~~~l~~----~~-~~yD~viID~pp~~~~~~~--~al~aaD~vliP~~ps~~d~~~~~~~~~~i~~~~ 127 (211) T PHA02518 62 -------MGKSIRADLPK----VA-SGYDYVVVDGAPQDSELAR--AALRIADMVLIPVQPSPFDIWAAPDLVELIKARQ 127 (211) T ss_pred -------CCHHHHHHHHH----HC-CCCCEEEECCCCCCHHHHH--HHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHH T ss_conf -------36779999997----40-6788899889997429999--9999589699963786878999999999999999 Q ss_pred CC--CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE-EECCCCHHHHHHHCCCCCEEEECCCCHHHHHH Q ss_conf 01--2211445544202458778866512477658999998479789-88279989997502882179977999899999 Q gi|254780831|r 253 KM--NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL-ESVPFDMDVRVLSDLGIPIVVHNMNSATSEIY 329 (341) Q Consensus 253 ~~--~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l-g~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~ 329 (341) T Consensus 128 ~~~~~~~~~~~l~~~~~-------~~~~~--~~~~~~~l~~~~~~v~~t~I~~r~~~~~a~~~G~~V~e~~~~~~aa~e~ 198 (211) T PHA02518 128 EVTDGLPKFAFIISRAI-------KNTQL--YREARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLELPEDDKAAEEI 198 (211) T ss_pred HHCCCCCEEEEEEECCC-------CCCHH--HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHEECCCCHHHHHH T ss_conf 86656751688862358-------66569--9999999998699810681988789999997599761099799999999 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999983 Q gi|254780831|r 330 QEISDRIQQFF 340 (341) Q Consensus 330 ~~iA~~i~~~l 340 (341) T Consensus 199 ~~L~~Eil~r~ 209 (211) T PHA02518 199 IQLVKELFRGI 209 (211) T ss_pred HHHHHHHHHHH T ss_conf 99999999863 |
|
| >CHL00072 chlL photochlorophyllide reductase subunit L | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-26 Score=194.55 Aligned_cols=218 Identities=23% Similarity=0.283 Sum_probs=144.9 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC--CCCCC----CC----CC-----CCCC Q ss_conf 0102446665425789999898723577506988224678765310002456--31123----34----45-----7663 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK--VEISD----KK----FL-----KPKE 161 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~--~~~~~----~~----~i-----~p~~ 161 (341) T Consensus 2 ~iaiy-GKGGIGKSTtsaNlsaaLA~~GkkVl~IGcDpk~DsT---~~L~g~~~~tvld~l~~~~~~~~~~~~edvi~~G 77 (271) T CHL00072 2 KIAVY-GKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDST---FTLTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKG 77 (271) T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHH---HHHCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCC T ss_conf 69997-8985448588999999999879979997899737777---4006998885999997537873216499998527 Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCC-HHHHCC-CCCCEEEEECCCC Q ss_conf 2230322333435522100013420247899986752-137775899745564442100-000002-2340267421443 Q gi|254780831|r 162 NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV-VWGQLDFLLIDMPPGTGDAHL-TIAQKI-PLSGVVIVSTPQD 238 (341) Q Consensus 162 ~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~-~w~~~D~liiD~ppG~gd~~l-sl~~~~-~~~~~iiVttP~~ 238 (341) T Consensus 78 ~~gi~cvEaGG-PepGvGCaGrgi--~~~i-~lL~~l~~~~d~D~V~yDvlgD---VVCGGFa~Pi~~Ad~~~iVts~e~ 150 (271) T CHL00072 78 YGGVDCVEAGG-PPAGAGCGGYVV--GETV-KLLKELNAFYEYDVILFDVLGD---VVCGGFAAPLNYADYCIIITDNGF 150 (271) T ss_pred CCCCEEEECCC-CCCCCCCCCCCC--HHHH-HHHHHCCCCCCCCEEEEECCCC---CCCCCCCCCCCCCCEEEEEECCCH T ss_conf 78846654389-998877788651--9999-9999737621388899944776---556545675000888999956708 Q ss_pred CHHHHHHHHHHHHHC----CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCC Q ss_conf 113456667776400----1221144554420245877886651247765899999847978988279989997502882 Q gi|254780831|r 239 LALIDVKRAISMYQK----MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGI 314 (341) Q Consensus 239 ~s~~da~r~~~~~~~----~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~ 314 (341) T Consensus 151 malyaANnI~~~i~~~a~~~~~rl~GiI~N~~-------~~------~~~v~~fa~~~g~~~i~~iPrd~~V~~ae~~~~ 217 (271) T CHL00072 151 DALFAANRIAASVREKARTHPLRLAGLVGNRT-------SK------RDLIDKYVEACPMPVLEVLPLIEDIRVSRVKGK 217 (271) T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC-------CC------HHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCC T ss_conf 89999999999999973046864443652268-------83------789999999739966985687116689997488 Q ss_pred CEEEECCCCHH----HHHHHHHHHHHHH Q ss_conf 17997799989----9999999999999 Q gi|254780831|r 315 PIVVHNMNSAT----SEIYQEISDRIQQ 338 (341) Q Consensus 315 P~v~~~p~s~~----a~~~~~iA~~i~~ 338 (341) T Consensus 218 TviE~~p~s~~~~~~~~~Yr~LA~~I~~ 245 (271) T CHL00072 218 TLFEMAESEPSLNYVCDFYLNIADQLLS 245 (271) T ss_pred CEEECCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 2042289982478999999999999973 |
|
| >PRK13234 nifH nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=191.15 Aligned_cols=224 Identities=22% Similarity=0.285 Sum_probs=154.8 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC----CCCCC--------CCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233----44576--------6322 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK----KFLKP--------KENY 163 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~----~~i~p--------~~~~ 163 (341) T Consensus 5 r~IAiY-GKGGIGKSTtssNlsAAlA~~G~rVl~IGCDPK~DSTr~Llgg~~~~Tvld~~~~~~~~ed~~ledvv~~G~~ 83 (293) T PRK13234 5 RQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIGYK 83 (293) T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCC T ss_conf 579997-7984458778999999999779969997489831656876289999708899876498121538789743779 Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CCCCCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEECCC Q ss_conf 30322333435522100013420247899986752-1377758997455644421000000022-----34026742144 Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV-VWGQLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVSTPQ 237 (341) Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~-~w~~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVttP~ 237 (341) T Consensus 84 gI~CVEsGG-PePGvGCAGRGI--itai~-~Le~lga~ed~D~V~yDV---LGDVVCGG-FAmPir~g~A~evyIVtSge 155 (293) T PRK13234 84 GIKCVESGG-PEPGVGCAGRGV--ITSIN-FLEENGAYDDVDYVSYDV---LGDVVCGG-FAMPIRENKAQEIYIVMSGE 155 (293) T ss_pred CEEEEECCC-CCCCCCCCCCCH--HHHHH-HHHHCCCCCCCCEEEEEC---CCCCCCCC-CCCCCCCCCCCEEEEEECCC T ss_conf 848976899-899888777131--46788-887718765799999956---77665147-55665458876899994671 Q ss_pred CCHHHHH---HHHHHHH-HCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCC Q ss_conf 3113456---6677764-00122114455442024587788665124776589999984797898827998999750288 Q gi|254780831|r 238 DLALIDV---KRAISMY-QKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLG 313 (341) Q Consensus 238 ~~s~~da---~r~~~~~-~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g 313 (341) T Consensus 156 ~mslyAANnI~~~i~~~~~~g~~rlgGlI~N~----r~~~~------e~~~v~~fa~~~gt~ii~~IPrs~~v~~aE~~~ 225 (293) T PRK13234 156 MMALYAANNIAKGILKYANSGGVRLGGLICNE----RQTDR------ELELAEALAKRLGSKLIHFVPRDNIVQHAELRR 225 (293) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEC----CCCCC------HHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCC T ss_conf 87999999999999998632696246899717----89853------799999999984993799779968899999739 Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHH Q ss_conf 2179977999899999999999999 Q gi|254780831|r 314 IPIVVHNMNSATSEIYQEISDRIQQ 338 (341) Q Consensus 314 ~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341) T Consensus 226 ~TviE~~P~s~~A~~Yr~LA~~I~~ 250 (293) T PRK13234 226 MTVIEYAPDSKQAGEYRALAEKIHA 250 (293) T ss_pred CEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 7778968898799999999999984 |
|
| >PRK13236 nitrogenase reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=188.89 Aligned_cols=224 Identities=20% Similarity=0.244 Sum_probs=155.5 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC----CCCCCCC--------CCC Q ss_conf 2010244666542578999989872357750698822467876531000245631123----3445766--------322 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD----KKFLKPK--------ENY 163 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~----~~~i~p~--------~~~ 163 (341) T Consensus 7 k~IAiY-GKGGIGKSTts~NlsAAlA~~G~rVl~IGCDPK~DSTr~Llgg~~~~tvld~~~e~~~~ed~~ledvv~~G~~ 85 (295) T PRK13236 7 RQIAFY-GKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELEEVMLTGFR 85 (295) T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCC T ss_conf 189996-7984347578999999999779969997889802667876389999718888876098444548887422658 Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEECCC Q ss_conf 3032233343552210001342024-78999867521377758997455644421000000022-----34026742144 Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQ-SAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVSTPQ 237 (341) Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~-~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVttP~ 237 (341) T Consensus 86 Gi~CvEsGG-PePGvGCAGRGIitai~lLee~---ga~e~~D~V~yDV---LGDVVCGG-FAmPir~g~A~evyiVtSge 157 (295) T PRK13236 86 GVRCVESGG-PEPGVGCAGRGIITAINFLEEN---GAYQDLDFVSYDV---LGDVVCGG-FAMPIREGKAQEIYIVTSGE 157 (295) T ss_pred CCEEEECCC-CCCCCCCCCCEEEEHHHHHHHC---CCCCCCCEEEEEE---CCCCCCCC-CCCCCCCCCCCEEEEEECCC T ss_conf 837987899-9998988886254056679871---9855699898850---57753267-54656678764899995681 Q ss_pred CCHHHHH---HHHHHHHH-CCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCC Q ss_conf 3113456---66777640-0122114455442024587788665124776589999984797898827998999750288 Q gi|254780831|r 238 DLALIDV---KRAISMYQ-KMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLG 313 (341) Q Consensus 238 ~~s~~da---~r~~~~~~-~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g 313 (341) T Consensus 158 ~malyAANNI~~~i~~~a~~g~~rlgGiI~N~----------r~~~~e~~~v~~fa~~~gt~ii~~iPr~~~V~~ae~~~ 227 (295) T PRK13236 158 MMAMYAANNIARGILKYAHTGGVRLGGLICNS----------RNVDREIELIETLAKRLNTQMIHFVPRDNIVQHAELRR 227 (295) T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC----------CCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHCC T ss_conf 88999999999999999742697035899607----------88874799999999981992699657838888999739 Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHH Q ss_conf 2179977999899999999999999 Q gi|254780831|r 314 IPIVVHNMNSATSEIYQEISDRIQQ 338 (341) Q Consensus 314 ~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341) T Consensus 228 ~TviE~~P~s~~A~~Yr~LA~~i~~ 252 (295) T PRK13236 228 MTVNEYAPDSNQGNEYRILAKKIIN 252 (295) T ss_pred CEEEEECCCCHHHHHHHHHHHHHHH T ss_conf 8768878897799999999999985 |
|
| >COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=182.17 Aligned_cols=233 Identities=25% Similarity=0.339 Sum_probs=146.8 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCCCCEECCCCCCCC------CC-CCC---CCCC-CC Q ss_conf 420102446665425789999898723-577506988224678765310002456311------23-344---5766-32 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALK-NKGKNVAILDADVYGPSIPKLLKISGKVEI------SD-KKF---LKPK-EN 162 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala-~~G~~V~liDaDi~~ps~~~~lg~~~~~~~------~~-~~~---i~p~-~~ 162 (341) T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259) T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG-SLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTVVI 80 (259) T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC-CHHHHHCCCCCCCCCHHHHHHCCCCCCCHHHCCCCC T ss_conf 7699998578885199999999999998389978999789994-177784666432310366763233322102203445 Q ss_pred CCEEECCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHH Q ss_conf 2303223334355221000134-202478999867521377758997455644421000000022340267421443113 Q gi|254780831|r 163 YGIKIMSMASLVDENVAMIWRG-PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLAL 241 (341) Q Consensus 163 ~gi~~~s~g~l~~~~~~~~~rg-~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~ 241 (341) T Consensus 81 ~~l~~ip~~~~l~~-~~~~~~~~~~~~~~l~~~~~-~~~~~yD~iiID~pp~l~~--l~~nal~asd~vliP~~~~~~~~ 156 (259) T COG1192 81 EGLDLIPSNIDLAE-GAEIELNAVAKELLLKRLLD-PVKDDYDYIIIDTPPSLGV--LTLNALAAADHVLIPVQPEFLDL 156 (259) T ss_pred CCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEECCCCCHHH--HHHHHHHHHCCEEECCCCCHHHH T ss_conf 67312357600010-04566542117899999975-2026999899899986167--77999998275567047508689 Q ss_pred HHHHHHHHHHHCC---C---CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCC-CEEEECCCCHHHHHHHCCCC Q ss_conf 4566677764001---2---211445544202458778866512477658999998479-78988279989997502882 Q gi|254780831|r 242 IDVKRAISMYQKM---N---IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGI-PFLESVPFDMDVRVLSDLGI 314 (341) Q Consensus 242 ~da~r~~~~~~~~---~---~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i-~~lg~IP~d~~i~~a~~~g~ 314 (341) T Consensus 157 ~~l~~~~~~i~~~~~~~~~~~~~~~i~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~g~ 228 (259) T COG1192 157 EGLEQLLNTLEDLLKLRRNKLIVVGILITRFD-------SRTKL-ADEVLQELKQLLGDPVLKTKIPRRVAYREAAAEGK 228 (259) T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC-------CCCCH-HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC T ss_conf 88999999999999852453232567435347-------42015-78999999975143111144765326887887498 Q ss_pred CEEEECCCCHHHHHHHHHHHHHHHHH Q ss_conf 17997799989999999999999983 Q gi|254780831|r 315 PIVVHNMNSATSEIYQEISDRIQQFF 340 (341) Q Consensus 315 P~v~~~p~s~~a~~~~~iA~~i~~~l 340 (341) T Consensus 229 ~~~~~~~~~~~~~~~~~~~~e~~~~~ 254 (259) T COG1192 229 PLYEYDPKSKAAEEYYELAKELLEEL 254 (259) T ss_pred CEEEECCCCHHHHHHHHHHHHHHHHH T ss_conf 01550787557999999999999975 |
|
| >TIGR03453 partition_RepA plasmid partitioning protein RepA | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-23 Score=178.10 Aligned_cols=229 Identities=18% Similarity=0.257 Sum_probs=142.3 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC-----------------CCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233-----------------4457 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK-----------------KFLK 158 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~-----------------~~i~ 158 (341) T Consensus 105 ~VIav~N~KGGVGKTTtav~LA~~LA~~G~RVLvIDLDPQa-nlT~~~G~~pe~d~~~~~tl~~~l~~d~~~~~l~~~i~ 183 (387) T TIGR03453 105 QVIAVTNFKGGSGKTTTSAHLAQYLALRGYRVLAIDLDPQA-SLSALFGFQPEFDVGENETLYGAIRYDDERRPLSEIIR 183 (387) T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHH T ss_conf 08999788876569999999999999779988999537016-78875289843466756429999844556687999611 Q ss_pred CCCCCCEEECCCCC-CCCC--CCCC-CCCC----CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCE Q ss_conf 66322303223334-3552--2100-0134----2024789998675213777589974556444210000000223402 Q gi|254780831|r 159 PKENYGIKIMSMAS-LVDE--NVAM-IWRG----PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGV 230 (341) Q Consensus 159 p~~~~gi~~~s~g~-l~~~--~~~~-~~rg----~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~ 230 (341) T Consensus 184 ~T~~~~LdliPa~~~L~~~E~~~~~~l~~~~~~~~~f~~rL~~aL~~v-~d~YD~IlIDcPPsLg--~lT~nAL~AAd~v 260 (387) T TIGR03453 184 KTYFPGLDLIPGNLELMEFEHETPRALSRGAGGDTIFFARVGEALAEV-EDDYDVVVIDCPPQLG--FLTLSALCAATAV 260 (387) T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCC--HHHHHHHHHCCEE T ss_conf 479999689659889999889889999743110026999999999976-6029999995898513--9999999981940 Q ss_pred EEEECCCCCHHHHHHHHHHHH-------HC----CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCC-EEE Q ss_conf 674214431134566677764-------00----122114455442024587788665124776589999984797-898 Q gi|254780831|r 231 VIVSTPQDLALIDVKRAISMY-------QK----MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIP-FLE 298 (341) Q Consensus 231 iiVttP~~~s~~da~r~~~~~-------~~----~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~-~lg 298 (341) T Consensus 261 lIPv~p~~ld~~s~~qfl~~~~~l~~~i~~~g~~~~~d~~~~LlT~--~d-----~~~~~-~~~v~~~~r~~fg~~vl~~ 332 (387) T TIGR03453 261 LITVHPQMLDVMSMSQFLLMTGDLLGVVRDAGGNLSYDWMRYLVTR--YE-----PNDGP-QAQMVAFMRSLFGEHVLTN 332 (387) T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEE--EC-----CCCCH-HHHHHHHHHHHHHHHHHCC T ss_conf 8788871777999999999999999999971677676405776451--78-----99846-9999999999850654236 Q ss_pred ECCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH Q ss_conf 82799899975028821799779998999999999999 Q gi|254780831|r 299 SVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRI 336 (341) Q Consensus 299 ~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i 336 (341) T Consensus 333 ~i~~S~ai~~A~~~~~TiyE~~~~~~~r~ty~Ra~e~~ 370 (387) T TIGR03453 333 PMLKSTAISDAGLTKQTLYEVERSQFTRSTYDRAMESL 370 (387) T ss_pred EEEHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH T ss_conf 20167999863763793598774658989999999999 |
Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error. |
| >COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-23 Score=173.90 Aligned_cols=220 Identities=23% Similarity=0.357 Sum_probs=159.1 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCEECCCCCCCCCCCC------CC------C----- Q ss_conf 010244666542578999989872357-75069882246787653100024563112334------45------7----- Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADVYGPSIPKLLKISGKVEISDKK------FL------K----- 158 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~------~i------~----- 158 (341) T Consensus 2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255) T COG3640 2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255) T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-CCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC T ss_conf 69996-599765899999999999864895499994899-9990776299998755300899999986147899955300 Q ss_pred ---------C----CCCCCEEECCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH Q ss_conf ---------6----632230322333435522100013420--2478999867521377758997455644421000000 Q gi|254780831|r 159 ---------P----KENYGIKIMSMASLVDENVAMIWRGPM--VQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQ 223 (341) Q Consensus 159 ---------p----~~~~gi~~~s~g~l~~~~~~~~~rg~~--~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~ 223 (341) T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~G-----eGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGi--EHfgRg~ 152 (255) T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGG-----EGCACPMNALLRRLLRHLILNRYEVVIVDTEAGI--EHFGRGT 152 (255) T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEECCCCCCC-----CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCH--HHHCCCC T ss_conf 13754335169885006880079952556799-----7431627899999999975166748999633456--6656563 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCC Q ss_conf 02234026742144311345666777640012211445544202458778866512477658999998479789882799 Q gi|254780831|r 224 KIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFD 303 (341) Q Consensus 224 ~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d 303 (341) T Consensus 153 ~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv----~---e~e-----~~~~~~~~~~~~~vlg~iP~d 220 (255) T COG3640 153 IEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKV----D---EEE-----ELLRELAEELGLEVLGVIPYD 220 (255) T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEC----C---CHH-----HHHHHHHHCCCCEEEEECCCC T ss_conf 2578779999578778888899999999871875499999503----4---115-----777765322797489971698 Q ss_pred HHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHH Q ss_conf 8999750288217997799989999999999999983 Q gi|254780831|r 304 MDVRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQFF 340 (341) Q Consensus 304 ~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~~l 340 (341) T Consensus 221 ~~v~~~dl~G~pl~~~-~--~v~~~i~~I~~~l~~~~ 254 (255) T COG3640 221 PEVVEADLKGEPLNEE-P--EVLKEIEEIAERLIKLV 254 (255) T ss_pred HHHHHCCCCCCCCCCC-H--HHHHHHHHHHHHHHHCC T ss_conf 7887422568842123-5--55789999999998504 |
|
| >PRK13869 plasmid-partitioning protein RepA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-23 Score=178.09 Aligned_cols=229 Identities=18% Similarity=0.235 Sum_probs=140.7 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC-----------------CCCCC Q ss_conf 2010244666542578999989872357750698822467876531000245631123-----------------34457 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD-----------------KKFLK 158 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~-----------------~~~i~ 158 (341) T Consensus 122 kVIaVaN~KGGVGKTTtav~LA~~LA~~G~RVLlIDLDPQg-nlS~~lG~~pe~d~~~~~tl~~~l~~d~~~~~l~~~I~ 200 (405) T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLRDVIR 200 (405) T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHH-HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHCC T ss_conf 28999788877659999999999999779988999645617-88898089854566531359999844545587999521 Q ss_pred CCCCCCEEECCCCC-CCCCC--CCC--C---CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCE Q ss_conf 66322303223334-35522--100--0---1342024789998675213777589974556444210000000223402 Q gi|254780831|r 159 PKENYGIKIMSMAS-LVDEN--VAM--I---WRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGV 230 (341) Q Consensus 159 p~~~~gi~~~s~g~-l~~~~--~~~--~---~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~ 230 (341) T Consensus 201 ~T~~~~LdlIPa~l~L~~~E~~~~~~l~~~~~~~~~~~~rl~~~L~~v-~d~YDvIiIDcPPsLg--~lT~nAL~AAd~v 277 (405) T PRK13869 201 PTYFDGLHLVPGNLELMEFEHTTPKALSDRGTRDGLFFTRVAQAFDEV-ADDYDVVVIDCPPQLG--FLTLSGLCAATSM 277 (405) T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEEECCCCHH--HHHHHHHHHHCEE T ss_conf 679999689589889999888759998743315568999999999864-4129989995998265--9999999982863 Q ss_pred EEEECCCCCHHHHHHHHHHHHHCC-----------CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEE-E Q ss_conf 674214431134566677764001-----------2211445544202458778866512477658999998479789-8 Q gi|254780831|r 231 VIVSTPQDLALIDVKRAISMYQKM-----------NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFL-E 298 (341) Q Consensus 231 iiVttP~~~s~~da~r~~~~~~~~-----------~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~l-g 298 (341) T Consensus 278 lIPv~pe~ld~~s~~qfl~~~~~l~~~~~~~~~~~~~dfir~LlTr-------~d~~~~~-~~~v~~~lr~~fg~~Vl~~ 349 (405) T PRK13869 278 VITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTR-------YEPQDAP-QTKVTALLRNMFEDHVLTN 349 (405) T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE-------ECCCCCH-HHHHHHHHHHHHHHHHHHC T ss_conf 8648960878999999999999999999970788785404563140-------6899825-9999999999987888608 Q ss_pred ECCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHH Q ss_conf 82799899975028821799779998999999999999 Q gi|254780831|r 299 SVPFDMDVRVLSDLGIPIVVHNMNSATSEIYQEISDRI 336 (341) Q Consensus 299 ~IP~d~~i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i 336 (341) T Consensus 350 ~i~~S~ais~A~~~~~TvyE~~~~~~~r~Ty~Ra~e~~ 387 (405) T PRK13869 350 PMVKSAAVSDAGLTKQTLYEIGRENLTRSTYDRAMESL 387 (405) T ss_pred CCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHH T ss_conf 07377999986874496287650527889999999999 |
|
| >TIGR01287 nifH nitrogenase iron protein; InterPro: IPR005977 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-23 Score=172.25 Aligned_cols=224 Identities=24% Similarity=0.300 Sum_probs=159.2 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCEECCCCCCCCCC----CCCCCCCCCCCEEECCC Q ss_conf 20102446665425789999898723577-50698822467876531000245631123----34457663223032233 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKG-KNVAILDADVYGPSIPKLLKISGKVEISD----KKFLKPKENYGIKIMSM 170 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G-~~V~liDaDi~~ps~~~~lg~~~~~~~~~----~~~i~p~~~~gi~~~s~ 170 (341) T Consensus 1 rqiAiY-GKGGIGKSTT~~N~~AAla~~gdkkVl~~GCDPKaDsTr~l~Gg~~~~TVLd~lre~G~ve~~~~e--~v~~~ 77 (278) T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGDKKVLVVGCDPKADSTRLLLGGKAQPTVLDVLREKGAVEDVELE--DVIKE 77 (278) T ss_pred CEEEEE-CCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCC--HHHEE T ss_conf 948886-278867006888999999862495589972388520234651774455489999856871144510--22001 Q ss_pred CC----CCCCCCCC-----CCCCCCHH-HHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEE Q ss_conf 34----35522100-----01342024-7899986752137-7758997455644421000000022-----34026742 Q gi|254780831|r 171 AS----LVDENVAM-----IWRGPMVQ-SAIMHMLHNVVWG-QLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVS 234 (341) Q Consensus 171 g~----l~~~~~~~-----~~rg~~~~-~~l~~~l~~~~w~-~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVt 234 (341) T Consensus 78 Gf~girCVESGGPePGVGCAGRGvItai~lL~~~--g~y~dLdlD~V~YDV---LGDVVCG-GFAmP~R~g~A~eiYiVt 151 (278) T TIGR01287 78 GFGGIRCVESGGPEPGVGCAGRGVITAIDLLEEL--GAYEDLDLDVVIYDV---LGDVVCG-GFAMPLREGLAQEIYIVT 151 (278) T ss_pred CCCCEEEEEECCCCCCCCCCCCHHEEEEHHHHHC--CCCCCCCCCEEEEEE---CCCEEEC-CCCCHHHCCCCCEEEEEC T ss_conf 6883188850768789520687112013377533--787311677689842---3655656-603610058865488860 Q ss_pred CCCCCHHHHH---HHHHHHH-HCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHH Q ss_conf 1443113456---6677764-00122114455442024587788665124776589999984797898827998999750 Q gi|254780831|r 235 TPQDLALIDV---KRAISMY-QKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLS 310 (341) Q Consensus 235 tP~~~s~~da---~r~~~~~-~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~ 310 (341) T Consensus 152 Sge~MAlYAANNI~kGI~kYa~~GGv~LGG~IcN~-----R~~~~e~E-----l~~~fA~~lgtq~i~~VPrs~~V~~AE 221 (278) T TIGR01287 152 SGEMMALYAANNIAKGILKYAKSGGVRLGGIICNS-----RNVDDEKE-----LVDEFAKKLGTQLIHFVPRSNIVQKAE 221 (278) T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEECCEEECC-----CCCCCHHH-----HHHHHHHHHCCEEEEECCCCCCCHHHH T ss_conf 34067899997887778999753882222478714-----57621789-----999999873770675217885212787 Q ss_pred CCCCCEEEECCCCHHHHHHHHHHHHHHH Q ss_conf 2882179977999899999999999999 Q gi|254780831|r 311 DLGIPIVVHNMNSATSEIYQEISDRIQQ 338 (341) Q Consensus 311 ~~g~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341) T Consensus 222 l~~~TVIE~dP~s~qA~~YR~LA~~I~~ 249 (278) T TIGR01287 222 LEKKTVIEYDPESEQANEYRELAKKIYE 249 (278) T ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHHH T ss_conf 3688456338871578999999999982 |
All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex. |
| >cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=164.17 Aligned_cols=222 Identities=22% Similarity=0.321 Sum_probs=153.5 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC---C-------CCCC--CCC Q ss_conf 420102446665425789999898723577506988224678765310002456311233---4-------4576--632 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK---K-------FLKP--KEN 162 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~---~-------~i~p--~~~ 162 (341) T Consensus 31 ~~~IAiY-GKGGIGKSTts~NlsAAlA~~GkkVm~IGCDPKaDSTrlLlgG~~~~TVLd~~~~~~~~~e~v~~~dv~~~g 109 (329) T cd02033 31 TQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVCFKR 109 (329) T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHEEECC T ss_conf 5499997-688435616889999999977996999788884603341058988840999998728864434250178625 Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEECC Q ss_conf 23032233343552210001342024-78999867521377758997455644421000000022-----3402674214 Q gi|254780831|r 163 YGIKIMSMASLVDENVAMIWRGPMVQ-SAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVSTP 236 (341) Q Consensus 163 ~gi~~~s~g~l~~~~~~~~~rg~~~~-~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVttP 236 (341) T Consensus 110 ~Gv~CvEsG-GPEPGvGCAGRGIItai~lLe~l-g-~~~~d~D~V~yDV---LGDVVCGG-FAmPiR~g~A~evyIVtSg 182 (329) T cd02033 110 DGVFAMELG-GPEVGRGCGGRGIIHGFELLEKL-G-FHDWDFDYVLLDF---LGDVVCGG-FGLPIARDMAQKVIVVGSN 182 (329) T ss_pred CCEEEEECC-CCCCCCCCCCCCHHHHHHHHHHC-C-CCCCCCCEEEEEC---CCCEEECC-CCCCCCCCCCCEEEEEECC T ss_conf 998898667-99998767887301366787763-7-7525899999922---45356646-3353356876289999678 Q ss_pred CCCHHHHH---HHHHHHHHCC-C-CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHC Q ss_conf 43113456---6677764001-2-21144554420245877886651247765899999847978988279989997502 Q gi|254780831|r 237 QDLALIDV---KRAISMYQKM-N-IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSD 311 (341) Q Consensus 237 ~~~s~~da---~r~~~~~~~~-~-~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~ 311 (341) T Consensus 183 E~MalyAANNI~~~i~~~a~~gg~vrl~GlI~N~-------~~------~~~e~e~fa~~~g~~~l~~vP~d~~iRr~~~ 249 (329) T cd02033 183 DLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINK-------DD------GTGEAQAFAAHAGIPILAAIPADEELRRKSA 249 (329) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-------CC------CCHHHHHHHHHCCCCEEEECCCCHHHHHHHH T ss_conf 0889998878999999998638971011598606-------88------7249999999719957996378778876543 Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHH Q ss_conf 8821799779998999999999999998 Q gi|254780831|r 312 LGIPIVVHNMNSATSEIYQEISDRIQQF 339 (341) Q Consensus 312 ~g~P~v~~~p~s~~a~~~~~iA~~i~~~ 339 (341) T Consensus 250 ~y~i--v~~p~~~~~~~f~~LA~~i~~~ 275 (329) T cd02033 250 AYQI--VGRPGTTWGPLFEQLATNVAEA 275 (329) T ss_pred HCCC--CCCCCCHHHHHHHHHHHHHHHC T ss_conf 0260--3487615899999999976127 |
This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster. |
| >PRK10037 cell division protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-22 Score=169.82 Aligned_cols=221 Identities=14% Similarity=0.157 Sum_probs=136.6 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCC--CCC-----CCCCC--CCCCCCCCCEE Q ss_conf 2010244666542578999989872357750698822467876531000245--631-----12334--45766322303 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISG--KVE-----ISDKK--FLKPKENYGIK 166 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~--~~~-----~~~~~--~i~p~~~~gi~ 166 (341) T Consensus 2 ~iial~s~kGGVGkTTltAnLA~aL~~~g~~VlaID~dpqN-~Lrlhfg~~~~~~~Gwa~a~l~g~~W~~a~~~~~~gl~ 80 (250) T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQLD 80 (250) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHH-HHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHCCCCCE T ss_conf 37999607888768999999999999779918999578256-67875499854477299998569978999850569936 Q ss_pred ECCCCCCCCCCCCCC--CCC--CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCC-CCCEEEEECCCCCHH Q ss_conf 223334355221000--134--202478999867521377758997455644421000000022-340267421443113 Q gi|254780831|r 167 IMSMASLVDENVAMI--WRG--PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIP-LSGVVIVSTPQDLAL 241 (341) Q Consensus 167 ~~s~g~l~~~~~~~~--~rg--~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~-~~~~iiVttP~~~s~ 241 (341) T Consensus 81 ~LPfG~l~~~~~~~~~~~~~~~~~l~~~l~~l~-~--~~~~~~vliD~P~g~s~~~---~~~l~~AD~vLvVv~aDa~s~ 154 (250) T PRK10037 81 LLPFGQLSIEEQENPQHWQTTLGDICSALQQLK-A--SGRYQWILLDLPRGASPLT---RQLLSLCDHSLAIVNVDANCH 154 (250) T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC-C--CCCCCEEEEECCCCCCHHH---HHHHHHCCEEEEEECCCHHHH T ss_conf 972787998998638877651799999986200-2--5789989996599982999---999985787899836787789 Q ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEEC Q ss_conf 4566677764001221-144554420245877886651247765899999847978988279989997502882179977 Q gi|254780831|r 242 IDVKRAISMYQKMNIP-IIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHN 320 (341) Q Consensus 242 ~da~r~~~~~~~~~~~-i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~ 320 (341) T Consensus 155 ~~L-------~q~~~~~g~~~liNq-------~~~~s~l-~~Dl~~l~~q~~~~llp~~IHrDeav~EAlA~~~~v~~y~ 219 (250) T PRK10037 155 IRL-------HQQALPAGAHILIND-------LRIGSQL-QDDLYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPLGEYR 219 (250) T ss_pred HHH-------HHHCCCCCCCEEECC-------CCCHHHH-HHHHHHHHHHHCCCCCCEEECCCCHHHHHHHCCCCCCCCC T ss_conf 987-------342147898277516-------6711046-6999999997442415567517546899986599874759 Q ss_pred CCCHHHHHHHHHHHHHHH Q ss_conf 999899999999999999 Q gi|254780831|r 321 MNSATSEIYQEISDRIQQ 338 (341) Q Consensus 321 p~s~~a~~~~~iA~~i~~ 338 (341) T Consensus 220 P~SqAa~D~~~LA~W~l~ 237 (250) T PRK10037 220 SDSLAAEEILTLANWCLL 237 (250) T ss_pred CCCHHHHHHHHHHHHHHH T ss_conf 757788999999999998 |
|
| >COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=162.59 Aligned_cols=224 Identities=26% Similarity=0.309 Sum_probs=155.0 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCC----C---CC-----CCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233----4---45-----766322 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDK----K---FL-----KPKENY 163 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~----~---~i-----~p~~~~ 163 (341) T Consensus 2 r~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf~ 80 (278) T COG1348 2 RQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGFG 80 (278) T ss_pred CEEEEE-CCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHEECCCC T ss_conf 379996-2787673126778999999729817997479876327777478666569999986186445887782120678 Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-CC-CCCCEEEEECCCCCCCCCCHHHHCCC-----CCCEEEEECC Q ss_conf 30322333435522100013420247899986752-13-77758997455644421000000022-----3402674214 Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNV-VW-GQLDFLLIDMPPGTGDAHLTIAQKIP-----LSGVVIVSTP 236 (341) Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~-~w-~~~D~liiD~ppG~gd~~lsl~~~~~-----~~~~iiVttP 236 (341) T Consensus 81 gv~CVEsG-GPepGvGCAGRGVi--tai-~~Le~lgaf~~~~DvviyDV---LGDVVCGG-FAmPiReg~AdeiyIVtSg 152 (278) T COG1348 81 GVKCVESG-GPEPGVGCAGRGVI--TAI-NLLEELGAFEEDLDVVIYDV---LGDVVCGG-FAMPIREGYADEIYIVTSG 152 (278) T ss_pred CEEEEECC-CCCCCCCCCCCHHH--HHH-HHHHHHCCCCCCCCEEEEEC---CCCEEECC-EEEEHHCCCCCEEEEEECC T ss_conf 53774259-98999884651199--999-99998187301287899953---57734746-0002002666379999568 Q ss_pred CCCHHHHH---HHHHH-HHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCC Q ss_conf 43113456---66777-640012211445544202458778866512477658999998479789882799899975028 Q gi|254780831|r 237 QDLALIDV---KRAIS-MYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDL 312 (341) Q Consensus 237 ~~~s~~da---~r~~~-~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~ 312 (341) T Consensus 153 e~MalYAANNI~kgi~k~a~~~~~rLgGiIcN----------sR~~~~e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~ 222 (278) T COG1348 153 EMMALYAANNIAKGIRKYAKTGGVRLGGIICN----------SRSVDRERELVEAFAERLGTQLIHFVPRDNIVQKAELN 222 (278) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC----------CCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHC T ss_conf 35899998899999999873379631457745----------77764379999999998488527633512788999874 Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHH Q ss_conf 82179977999899999999999999 Q gi|254780831|r 313 GIPIVVHNMNSATSEIYQEISDRIQQ 338 (341) Q Consensus 313 g~P~v~~~p~s~~a~~~~~iA~~i~~ 338 (341) T Consensus 223 ~kTvie~~P~s~~a~~yr~LA~~I~~ 248 (278) T COG1348 223 GKTVIEYAPDSNQAEEYRELAKKILE 248 (278) T ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHH T ss_conf 86611318462489999999999983 |
|
| >TIGR02016 BchX chlorophyllide reductase iron protein subunit X; InterPro: IPR010246 This entry represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.4e-22 Score=166.07 Aligned_cols=221 Identities=26% Similarity=0.384 Sum_probs=149.8 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC---CCCC----CCCCCCCEEE- Q ss_conf 2010244666542578999989872357750698822467876531000245631123---3445----7663223032- Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD---KKFL----KPKENYGIKI- 167 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---~~~i----~p~~~~gi~~- 167 (341) T Consensus 1 r~iAiY-GKGG~GKSFtttNLs~~~A~mgkRVL~lGCDPKhDst~~LFGGislPT~~ev~~ekk~agreEev~~~dv~Fk 79 (355) T TIGR02016 1 RIIAIY-GKGGIGKSFTTTNLSAKLALMGKRVLQLGCDPKHDSTSALFGGISLPTVIEVFAEKKEAGREEEVKVSDVVFK 79 (355) T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEE T ss_conf 958897-4889866789899999999746823540578973322213678667508899999865187320566117872 Q ss_pred ---C--CCC-CCCCCCCCCCCCCC----CHHH--HHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCC-----CCE Q ss_conf ---2--333-43552210001342----0247--89998675213777589974556444210000000223-----402 Q gi|254780831|r 168 ---M--SMA-SLVDENVAMIWRGP----MVQS--AIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPL-----SGV 230 (341) Q Consensus 168 ---~--s~g-~l~~~~~~~~~rg~----~~~~--~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~-----~~~ 230 (341) T Consensus 80 ~~I~~~~~~vyg~ElGGPeVGRGCGGRGIi~GFd~LEKl-G~~~W-~~D~vlmDF---LGDVVCG-GFatPlaRslaeeV 153 (355) T TIGR02016 80 RDIMNFAATVYGIELGGPEVGRGCGGRGIIFGFDLLEKL-GLFEW-ELDFVLMDF---LGDVVCG-GFATPLARSLAEEV 153 (355) T ss_pred CCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHC-CCCCC-CHHHEEEEC---CCCEEEC-CCCCHHHHHHHCCE T ss_conf 336889874578881787115546875310102566552-74400-020002000---5867756-64431235320243 Q ss_pred EEEECCCCCHHHHH---HHHHHHHHCCC--CCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHH Q ss_conf 67421443113456---66777640012--21144554420245877886651247765899999847978988279989 Q gi|254780831|r 231 VIVSTPQDLALIDV---KRAISMYQKMN--IPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMD 305 (341) Q Consensus 231 iiVttP~~~s~~da---~r~~~~~~~~~--~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~ 305 (341) T Consensus 154 i~~~sNDrQSly~aNNic~A~~YFr~~GGr~~llGlvvNr-----------DD--GsG~A~~fA~~~gipvLa~iP~d~~ 220 (355) T TIGR02016 154 IVVTSNDRQSLYVANNICSAAEYFRKLGGRSKLLGLVVNR-----------DD--GSGVAEAFAKEVGIPVLAKIPLDRK 220 (355) T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC-----------CC--CCCHHHHHHHHCCCCEEEECCCCCH T ss_conf 7761374368888866988999998618860467889864-----------68--8718989898709934752676500 Q ss_pred HHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHH Q ss_conf 9975028821799779998999999999999998 Q gi|254780831|r 306 VRVLSDLGIPIVVHNMNSATSEIYQEISDRIQQF 339 (341) Q Consensus 306 i~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~~ 339 (341) T Consensus 221 ~Rdmddsf-dfaiklPe--vGeP~K~lA~~i~~~ 251 (355) T TIGR02016 221 VRDMDDSF-DFAIKLPE--VGEPFKELADDILLA 251 (355) T ss_pred HCCHHCCC-HHEEECCC--CCCHHHHHHHHHHHH T ss_conf 10000000-12020676--676478999999974 |
This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or 'iron' protein.; GO: 0005524 ATP binding, 0016628 oxidoreductase activity acting on the CH-CH group of donors NAD or NADP as acceptor, 0051539 4 iron 4 sulfur cluster binding, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process. |
| >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-20 Score=152.88 Aligned_cols=219 Identities=24% Similarity=0.325 Sum_probs=141.2 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC--------CCCEECCCCCCCCCC----CCCCCCCCCC Q ss_conf 2010244666542578999989872357750698822467876--------531000245631123----3445766322 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS--------IPKLLKISGKVEISD----KKFLKPKENY 163 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps--------~~~~lg~~~~~~~~~----~~~i~p~~~~ 163 (341) T Consensus 1 ~~lAvY-GKGGiGKSTTssNLSvA~A~~GkkVlQIGCDPKhDSTFTLtg~L~PTvidvL~~~~yH~E~v~~eD~iy~GY~ 79 (275) T TIGR01281 1 MILAVY-GKGGIGKSTTSSNLSVALAKKGKKVLQIGCDPKHDSTFTLTGKLIPTVIDVLDAVNYHYEDVEPEDVIYTGYG 79 (275) T ss_pred CEEEEE-CCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCEEEECCC T ss_conf 968886-3888770046789999998469918985257888877454474167464422567630310333787783468 Q ss_pred CEEECCCC----------CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCH-HHHCCC-CCCEE Q ss_conf 30322333----------4355221000134202478999867521377758997455644421000-000022-34026 Q gi|254780831|r 164 GIKIMSMA----------SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLT-IAQKIP-LSGVV 231 (341) Q Consensus 164 gi~~~s~g----------~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~ls-l~~~~~-~~~~i 231 (341) T Consensus 80 GVd~vEaGGPPAGsGCGGYVVGe----------TVKLLke~--~~-~~~yDVilFDV---LGDVVCGGFAaPL~YAd~aL 143 (275) T TIGR01281 80 GVDCVEAGGPPAGSGCGGYVVGE----------TVKLLKEL--DV-LDEYDVILFDV---LGDVVCGGFAAPLQYADYAL 143 (275) T ss_pred CEEEEECCCCCCCCCCCCEEECC----------HHHHHHHC--CH-HHHCCEEEEEE---CCCEEECCCCCHHHHHCCEE T ss_conf 56887147368988898747152----------24556652--63-34289799962---57555175464112321256 Q ss_pred EEECCCCCHHHHHHHHHH----HHHC-CCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHH Q ss_conf 742144311345666777----6400-12211445544202458778866512477658999998479789882799899 Q gi|254780831|r 232 IVSTPQDLALIDVKRAIS----MYQK-MNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDV 306 (341) Q Consensus 232 iVttP~~~s~~da~r~~~----~~~~-~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i 306 (341) T Consensus 144 vva~NDFDalFAANRia~av~~K~~~Gy~vkLAGiIaNR----~~---~~yG-GGtdlle~F~~~~~~~~l~~~P~~d~I 215 (275) T TIGR01281 144 VVAANDFDALFAANRIAAAVREKAKSGYDVKLAGIIANR----VD---KEYG-GGTDLLEKFAERVGTPVLGVVPRLDEI 215 (275) T ss_pred EEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECC----CC---CCCC-CCCCHHHHHHHHCCCCEEEECCCHHHC T ss_conf 661077217899999999999984179707873266312----11---3117-871568999986288322007771110 Q ss_pred HHHHCCCCCEEEECCC----CHHHHHHHHHHHHHHHH Q ss_conf 9750288217997799----98999999999999998 Q gi|254780831|r 307 RVLSDLGIPIVVHNMN----SATSEIYQEISDRIQQF 339 (341) Q Consensus 307 ~~a~~~g~P~v~~~p~----s~~a~~~~~iA~~i~~~ 339 (341) T Consensus 216 R~SRl~g~TlFEmee~~p~~~~~~~~y~~~A~~LL~~ 252 (275) T TIGR01281 216 RRSRLKGKTLFEMEESGPELEEVTAEYLKMAEYLLAK 252 (275) T ss_pred CHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHC T ss_conf 2010158612301589965889999999999999863 |
The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction. |
| >COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-16 Score=127.25 Aligned_cols=223 Identities=21% Similarity=0.272 Sum_probs=154.5 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCEECCCCCCCCCC---------CCCC---CCCC Q ss_conf 42010244666542578999989872357-750698822467876531000245631123---------3445---7663 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADVYGPSIPKLLKISGKVEISD---------KKFL---KPKE 161 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---------~~~i---~p~~ 161 (341) T Consensus 104 ~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~~ 183 (366) T COG4963 104 GRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTRL 183 (366) T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCC T ss_conf 32899996058866689999999998641487389997688876123430787214589886097876078777898616 Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHH Q ss_conf 22303223334355221000134202478999867521377758997455644421000000022340267421443113 Q gi|254780831|r 162 NYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLAL 241 (341) Q Consensus 162 ~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~ 241 (341) T Consensus 184 ~~~l~ll~a~--~~~~~~~----d~~~~~~~~Ll~-~~~~~~~~vV~Dlp~~~~~~--t~~vL~~Sd~iviv~e~sl~sl 254 (366) T COG4963 184 ASGLKLLAAP--TELAKNY----DLKTGAVERLLD-LLRGSFDFVVVDLPNIWTDW--TRQVLSGSDEIVIVAEPSLASL 254 (366) T ss_pred CCCCEEECCC--CCHHHHC----CCCCCHHHHHHH-HHHCCCCEEEECCCCCCCHH--HHHHHHCCCEEEEEECCCHHHH T ss_conf 8876330377--4456521----533126999999-76402883897189766258--9999862884999963638989 Q ss_pred HHHHHHHHHHHCCCCC--HHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHH-HHHCCCCCEEE Q ss_conf 4566677764001221--14455442024587788665124776589999984797898827998999-75028821799 Q gi|254780831|r 242 IDVKRAISMYQKMNIP--IIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVR-VLSDLGIPIVV 318 (341) Q Consensus 242 ~da~r~~~~~~~~~~~--i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~-~a~~~g~P~v~ 318 (341) T Consensus 255 R~ak~lld~l~~~r~~~~~p~lv~n~-----~~~~~~------~~~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E 323 (366) T COG4963 255 RNAKELLDELKRLRPNDPKPILVLNR-----VGVPKR------PEPSDLEEILGIESLLVLPFDPALFGDAANNGRMLSE 323 (366) T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEEE-----CCCCCC------CCHHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCC T ss_conf 99999999999737798895688652-----278889------9999998884884001366770544444206960222 Q ss_pred ECCCCHHHHHHHHHHHHHH Q ss_conf 7799989999999999999 Q gi|254780831|r 319 HNMNSATSEIYQEISDRIQ 337 (341) Q Consensus 319 ~~p~s~~a~~~~~iA~~i~ 337 (341) T Consensus 324 ~~~~~~~~k~l~~la~~l~ 342 (366) T COG4963 324 VDPGSPAAKALAQLAQSLG 342 (366) T ss_pred CCCCCHHHHHHHHHHHHHC T ss_conf 3778758899999999853 |
|
| >PRK01077 cobyrinic acid a,c-diamide synthase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.3e-06 Score=60.62 Aligned_cols=196 Identities=20% Similarity=0.350 Sum_probs=98.1 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCC--CCCCCCCCCCCCCCEEECCCCCCC Q ss_conf 010244666542578999989872357750698822467876531000245631--123344576632230322333435 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVE--ISDKKFLKPKENYGIKIMSMASLV 174 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~--~~~~~~i~p~~~~gi~~~s~g~l~ 174 (341) T Consensus 5 ~lmI~gt~S~~GKT~vt~gL~r~l~~rG~~VapFK~---GPD---y--Idp~~~~~a~g----~~~--~nLD~----~l~ 66 (451) T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV---GPD---Y--IDPAFHAAATG----RPS--RNLDS----WMM 66 (451) T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCC---CCC---C--CCHHHHHHHHC----CCC--CCCCH----HHC T ss_conf 799986899997899999999999968794575357---857---6--29899999978----975--35883----448 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCC---------CCCHHHHCCCCCCEEEEECCCCCH--HHH Q ss_conf 522100013420247899986752137775899745564442---------100000002234026742144311--345 Q gi|254780831|r 175 DENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGD---------AHLTIAQKIPLSGVVIVSTPQDLA--LID 243 (341) Q Consensus 175 ~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd---------~~lsl~~~~~~~~~iiVttP~~~s--~~d 243 (341) T Consensus 67 ~~------------~~v~~~~~~~~-~~~D~~viEG~mGlyDG~~~~~~~gS~aeiA~~l~-~PViLViD~~~~~~s~aa 132 (451) T PRK01077 67 GE------------DLVRALFARAA-GGADIAVIEGVMGLFDGAGGDPDKGSTADIARLLG-APVVLVVDASGMAQSAAA 132 (451) T ss_pred CH------------HHHHHHHHHHC-CCCCEEEEEECHHCCCCCCCCCCCCCHHHHHHHHC-CCEEEEECCCCHHHHHHH T ss_conf 99------------99999999754-66888998501011345456777777899998709-988999846620899999 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCE-EECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCCCCCEEEECCC Q ss_conf 666777640012211445544202458778866-5124776589999984797898827998999750288217997799 Q gi|254780831|r 244 VKRAISMYQKMNIPIIGMIENMSYFLASDTGKK-YDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDLGIPIVVHNMN 322 (341) Q Consensus 244 a~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~-~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~ 322 (341) T Consensus 133 ~v~G~~~~~~-~~~I~GvIlNk~------~g~~h~~l-----l~~~ie~~gvpvlG~lP~~~~l~lpeRH-LGLv~~~E~ 199 (451) T PRK01077 133 LVLGFARFDP-DLNIAGVILNRV------GSERHYQL-----LREALEELGLPVLGALPRDAALALPERH-LGLVQASEI 199 (451) T ss_pred HHHHHHHHCC-CCCEEEEEEECC------CCHHHHHH-----HHHHHHHCCCCEEEEECCCCCCCCCCCC-CCCCCHHHH T ss_conf 9999997597-787748996247------87668999-----9999986399579861576334564212-577670456 Q ss_pred CHHHHHHHHHHHHHH Q ss_conf 989999999999999 Q gi|254780831|r 323 SATSEIYQEISDRIQ 337 (341) Q Consensus 323 s~~a~~~~~iA~~i~ 337 (341) T Consensus 200 ~~~~~~~~~~~~~~~ 214 (451) T PRK01077 200 ADLEARLDALADLVE 214 (451) T ss_pred HHHHHHHHHHHHHHH T ss_conf 668999999999998 |
|
| >COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-05 Score=57.34 Aligned_cols=198 Identities=19% Similarity=0.266 Sum_probs=99.4 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECC--CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 102446665425789999898723577506988224--678765310002456311233445766322303223334355 Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDAD--VYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341) Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaD--i~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341) T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~a--tG~~------------srNLD~----~mm~ 64 (451) T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHTAA--TGRP------------SRNLDS----WMMG 64 (451) T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH--HCCC------------CCCCCH----HHCC T ss_conf 599548888858999999999998668721665568786381356676--3885------------677765----4469 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC------CCHHHHCCCC--CCEEEEECCCCCHHHHH--H Q ss_conf 221000134202478999867521377758997455644421------0000000223--40267421443113456--6 Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA------HLTIAQKIPL--SGVVIVSTPQDLALIDV--K 245 (341) Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~------~lsl~~~~~~--~~~iiVttP~~~s~~da--~ 245 (341) T Consensus 65 ~------------~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~S~AAiv 131 (451) T COG1797 65 E------------EGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSRSVAAIV 131 (451) T ss_pred H------------HHHHHHHHHHC-CCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHH T ss_conf 9------------89999999862-7898799961230236887776777799999985999899995752257899999 Q ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHH-HCCCEEEECCCCHHHHHHHCCCCCEEEECCCCH Q ss_conf 6777640012211445544202458778866512477658999998-479789882799899975028821799779998 Q gi|254780831|r 246 RAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEK-IGIPFLESVPFDMDVRVLSDLGIPIVVHNMNSA 324 (341) Q Consensus 246 r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~-~~i~~lg~IP~d~~i~~a~~~g~P~v~~~p~s~ 324 (341) T Consensus 132 ~G~~~fd-p~v~iaGVIlNrV------gserH~----~llr~Ale~~~gv~vlG~lpr~~~l~lp~RH-LGLV~a~E~~~ 199 (451) T COG1797 132 KGFKHFD-PDVNIAGVILNRV------GSERHY----ELLRDALEEYTGVPVLGYLPRDDDLELPSRH-LGLVPASERLE 199 (451) T ss_pred HHHHHCC-CCCCEEEEEEECC------CCHHHH----HHHHHHHHHCCCCCEEEEECCCCCCCCCCCC-CCCCCCHHHHH T ss_conf 8898619-9882578997247------778899----9999875532798579874278556785413-26534303444 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 99999999999999 Q gi|254780831|r 325 TSEIYQEISDRIQQ 338 (341) Q Consensus 325 ~a~~~~~iA~~i~~ 338 (341) T Consensus 200 ~~~~~~~~a~~v~~ 213 (451) T COG1797 200 LEAKLEALAEVVEK 213 (451) T ss_pred HHHHHHHHHHHHHH T ss_conf 89999999999986 |
|
| >PRK13896 cobyrinic acid a,c-diamide synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=56.54 Aligned_cols=193 Identities=18% Similarity=0.229 Sum_probs=98.8 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CCCEE-C-CCCCCCCCCCCCCCCCCCCCEEECCCCC Q ss_conf 2010244666542578999989872357750698822467876-53100-0-2456311233445766322303223334 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS-IPKLL-K-ISGKVEISDKKFLKPKENYGIKIMSMAS 172 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps-~~~~l-g-~~~~~~~~~~~~i~p~~~~gi~~~s~g~ 172 (341) T Consensus 2 kgilIAa~~SgsGKTtvt~gL~~aL~~rG~~Vq~FK~---GPDYIDP~~h~~a~G~~------------~~NLD~----~ 62 (432) T PRK13896 2 DGVVLAGTSSGVGKTVATLAVLQALADAGYDVQPAKA---GPDFIDPSHHEAVVDTP------------SRSLDP----W 62 (432) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCHHHHHHHHCCC------------CCCCCH----H T ss_conf 6289977899998999999999999978496376666---84751989999996898------------446891----0 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CCHHHHCCCC--CCEEEEECCCCCHHHHH--HHH Q ss_conf 355221000134202478999867521377758997455644421-0000000223--40267421443113456--667 Q gi|254780831|r 173 LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA-HLTIAQKIPL--SGVVIVSTPQDLALIDV--KRA 247 (341) Q Consensus 173 l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~-~lsl~~~~~~--~~~iiVttP~~~s~~da--~r~ 247 (341) T Consensus 63 m~~~~------------~v~~~~~~---~~aDiaviEGvMGLyDG~~~Sta~lA~~l~~PVvLVvd~~~~~~s~aA~v~G 127 (432) T PRK13896 63 LSGED------------GMRRTYWR---GTGDVCVVEGMMGLYDGTVASTAAVAEELDLPVVLVVDAKAGMESVAATALG 127 (432) T ss_pred HCCHH------------HHHHHHHH---CCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH T ss_conf 18989------------99999972---7998699961232457887758999998499989999332018889999999 Q ss_pred HHHHHCC---CCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHCC-CCCEEEECCCC Q ss_conf 7764001---2211445544202458778866512477658999998479789882799899975028-82179977999 Q gi|254780831|r 248 ISMYQKM---NIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIPFLESVPFDMDVRVLSDL-GIPIVVHNMNS 323 (341) Q Consensus 248 ~~~~~~~---~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~~lg~IP~d~~i~~a~~~-g~P~v~~~p~s 323 (341) T Consensus 128 ~~~f~~~~~~d~~iaGVIlN~----v--~s~rh~----~~l~~al~~-~i~vlG~lPr~~~l~lp~RHLGL--~~~~E~~ 194 (432) T PRK13896 128 FQAYADRAGVDIDVAGVLAQR----A--HGGRHA----DGIRDALPD-ELTYFGRVPPRSDLEIPDRHLGL--HMGSEAP 194 (432) T ss_pred HHHHCCCCCCCCEEEEEEECC----C--CCHHHH----HHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCC--CCCCCCC T ss_conf 997241247652476688426----7--758899----999999870-89489884247778984102598--7333442 Q ss_pred HHHHHHHHHHHH Q ss_conf 899999999999 Q gi|254780831|r 324 ATSEIYQEISDR 335 (341) Q Consensus 324 ~~a~~~~~iA~~ 335 (341) T Consensus 195 ~~~~~~~~~~~~ 206 (432) T PRK13896 195 IDDDALDAAAAH 206 (432) T ss_pred HHHHHHHHHHHH T ss_conf 389999999864 |
|
| >TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0043 Score=40.59 Aligned_cols=196 Identities=20% Similarity=0.300 Sum_probs=101.1 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCEEEEE--ECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC Q ss_conf 2446665425789999898723577506988--22467876531000245631123344576632230322333435522 Q gi|254780831|r 100 VASGKGGVGKSTTVVNIACALKNKGKNVAIL--DADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDEN 177 (341) Q Consensus 100 v~SgKGGVGKSt~s~nLa~ala~~G~~V~li--DaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~~ 177 (341) T Consensus 4 iAGt~S~vGKT~I~~g~m~~L~~~~~~VQ~fKVGPDYIDP~fH~~aTGr~sR--------------NLD----sF~~~~- 64 (464) T TIGR00379 4 IAGTSSKVGKTTISTGIMKALSRRKLEVQPFKVGPDYIDPSFHTLATGRKSR--------------NLD----SFFMSE- 64 (464) T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCC--------------CCC----HHHHHH- T ss_conf 8305687547899999999986186324654425874378845411478666--------------768----533028- Q ss_pred CCCCCCCCCHHHHHHH-HHHHHCCCCC--CEEEEECCCC---------CCCCCCHHHHCCC-CC-CEEEEECCCCCHHHH Q ss_conf 1000134202478999-8675213777--5899745564---------4421000000022-34-026742144311345 Q gi|254780831|r 178 VAMIWRGPMVQSAIMH-MLHNVVWGQL--DFLLIDMPPG---------TGDAHLTIAQKIP-LS-GVVIVSTPQDLALID 243 (341) Q Consensus 178 ~~~~~rg~~~~~~l~~-~l~~~~w~~~--D~liiD~ppG---------~gd~~lsl~~~~~-~~-~~iiVttP~~~s~~d 243 (341) T Consensus 65 -----------~~i~~~F~~~~--~~~Gs~~s~IEGv~GLYdg~Py~a~~d~-gStA~vAk~L~~PvvLv~n~~~L~~sa 130 (464) T TIGR00379 65 -----------AQIKELFIRHS--KGAGSDVSIIEGVRGLYDGIPYSAISDK-GSTASVAKALDAPVVLVVNAKRLSRSA 130 (464) T ss_pred -----------HHHHHHHHHHH--CCCCCCEEEECCCCCCCCCCCCCCCCCC-CCHHHHHHHHCCCEEEEEECCHHHHHH T ss_conf -----------99999999861--3478965797274134367688776877-518899998659889999564033578 Q ss_pred H--HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCHHHHHHHHH--CCCEEEECCCCHHHHHHHCC-C-CCEE Q ss_conf 6--667776400122114455442024587788665124776589999984--79789882799899975028-8-2179 Q gi|254780831|r 244 V--KRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGGARFEAEKI--GIPFLESVPFDMDVRVLSDL-G-IPIV 317 (341) Q Consensus 244 a--~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~--~i~~lg~IP~d~~i~~a~~~-g-~P~v 317 (341) T Consensus 131 aAiv~Gy~~fd-p~V~l~GVILN~---V---~~~rH~----~k~k~A~e~L~Pgi~vlG~~pR~~~l~~p~RHLGLVpa~ 199 (464) T TIGR00379 131 AAIVLGYRSFD-PDVKLKGVILNR---V---GSERHL----EKLKTAVEKLAPGIEVLGVIPRKEDLKVPDRHLGLVPAV 199 (464) T ss_pred HHHHHHHHHCC-CCCEEEEEEEEE---E---CCHHHH----HHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCC T ss_conf 67764134308-983178788731---0---774468----999999886368945887773675321477546531661 Q ss_pred EECCCCHHHHHHHHHHHHHHHHH Q ss_conf 97799989999999999999983 Q gi|254780831|r 318 VHNMNSATSEIYQEISDRIQQFF 340 (341) Q Consensus 318 ~~~p~s~~a~~~~~iA~~i~~~l 340 (341) T Consensus 200 E~-l~~~~~~~~~~la~~~e~~l 221 (464) T TIGR00379 200 ER-LDEIIQQILDWLAEVVEKYL 221 (464) T ss_pred CC-CCHHHHHHHHHHHHHHHHHC T ss_conf 35-31789999999999999744 |
It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process. |
| >PRK03333 coaE dephospho-CoA kinase/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.13 Score=30.66 Aligned_cols=202 Identities=16% Similarity=0.208 Sum_probs=91.8 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----CCCCCCCE------ECCCCCCCCCCCCCCCCCCCCCE Q ss_conf 01024466654257899998987235775069882246-----78765310------00245631123344576632230 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADV-----YGPSIPKL------LKISGKVEISDKKFLKPKENYGI 165 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi-----~~ps~~~~------lg~~~~~~~~~~~~i~p~~~~gi 165 (341) T Consensus 3 ~IGLT-GGIgsGKStv~~~l~----~~G~~--viDaD~iar~v~~pg~~~~~~iv~~FG~~---il~~dG~ldR~---~L 69 (394) T PRK03333 3 RIGLT-GGIGAGKSTVSATLA----QLGAV--VVDGDVLAREVVEPGTEGLAALVEAFGDD---ILLADGALDRP---AL 69 (394) T ss_pred EEEEE-CCCCCCHHHHHHHHH----HCCCE--EEEHHHHHHHHHCCCHHHHHHHHHHHCHH---HHCCCCCCCHH---HH T ss_conf 99830-675557999999999----87994--99857999999439868999999985989---63889735699---99 Q ss_pred EECCCCCCCCCCCCCCCCC----CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHH Q ss_conf 3223334355221000134----202478999867521377758997455644421000000022340267421443113 Q gi|254780831|r 166 KIMSMASLVDENVAMIWRG----PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLAL 241 (341) Q Consensus 166 ~~~s~g~l~~~~~~~~~rg----~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~ 241 (341) T Consensus 70 --~~~-vF~d~~-~~~~Ln~I~HP~Vr~~~~~~~~~~--~~~~vvv~DiPLL~-E~--~~--~~~~d~VvvV~~p~e~qv 138 (394) T PRK03333 70 --AAK-AFADDE-ARAVLNGIVHPLVAARRAELIAAA--PEDAVVVEDIPLLV-ES--GM--APLFPLVVVVHADVEVRV 138 (394) T ss_pred --HHH-HHCCHH-HHHHHHHHHCHHHHHHHHHHHHHC--CCCCEEEEEECHHE-EC--CC--CCCCCEEEEEECCHHHHH T ss_conf --988-838999-999998615899999999999855--79977999400113-22--63--036997999989889999 Q ss_pred HHHHH--HH-------HHHHCC----CCCHHH-HHHHHCCCCCCCCCCEEECCCCCHHHHHHHHHCCC-EEEECCCCHHH Q ss_conf 45666--77-------764001----221144-55442024587788665124776589999984797-89882799899 Q gi|254780831|r 242 IDVKR--AI-------SMYQKM----NIPIIG-MIENMSYFLASDTGKKYDLFGNGGARFEAEKIGIP-FLESVPFDMDV 306 (341) Q Consensus 242 ~da~r--~~-------~~~~~~----~~~i~G-iV~NMs~~~~~~~~~~~~~fg~~~~~~~a~~~~i~-~lg~IP~d~~i 306 (341) T Consensus 139 ~RL~~r~gls~~~A~aRIaaQ~~~e~r~a~AD~VIDN-----------------sGt~~~l~~~v~~lW~~rl~p~~~n~ 201 (394) T PRK03333 139 RRLVEQRGMAEADARARIAAQASDEQRRAAADVWLDN-----------------SGTPEELVEAVRDLWADRLLPFAHNL 201 (394) T ss_pred HHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCEEEEC-----------------CCCHHHHHHHHHHHHHHHHCCHHHHH T ss_conf 9998637989999999999479999999859999969-----------------89999999999999997425365676 Q ss_pred HHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHH Q ss_conf 975028821799779998999999999999998 Q gi|254780831|r 307 RVLSDLGIPIVVHNMNSATSEIYQEISDRIQQF 339 (341) Q Consensus 307 ~~a~~~g~P~v~~~p~s~~a~~~~~iA~~i~~~ 339 (341) T Consensus 202 ~~~~~~~~~~~~~~~dp~Wpaq~~r~~~Rl~~a 234 (394) T PRK03333 202 RARQPARAPPRLVPADPEWPAQAQRLVARLKRA 234 (394) T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH T ss_conf 418978999857899996289999999999985 |
|
| >cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-28 Score=208.88 Aligned_cols=167 Identities=22% Similarity=0.321 Sum_probs=105.2 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC-------CCCCCCEECCCCCCCCCCCCC---CCCCCCCCEEE Q ss_conf 10244666542578999989872357750698822467-------876531000245631123344---57663223032 Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY-------GPSIPKLLKISGKVEISDKKF---LKPKENYGIKI 167 (341) Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~-------~ps~~~~lg~~~~~~~~~~~~---i~p~~~~gi~~ 167 (341) T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~~G~rvLlvs~DPah~l~d~~~~~L~~~~~~~~-~e~~~~~~~~~v~~~~~~~~~~ 79 (217) T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVED-PEIAPNLYREEVDATRRVERAW 79 (217) T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHH T ss_conf 989978996619999999999999689949999589876653234798651358887-6667999987501666533311 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC----CCHHHHCCCCCCEEEEECCCCCHHHH Q ss_conf 23334355221000134202478999867521377758997455644421----00000002234026742144311345 Q gi|254780831|r 168 MSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA----HLTIAQKIPLSGVVIVSTPQDLALID 243 (341) Q Consensus 168 ~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~----~lsl~~~~~~~~~iiVttP~~~s~~d 243 (341) T Consensus 80 ~~~~-~~~~~~~~~~pg~~E~~~l~~~~~~~~~~~yD~IVvDtpP-TGhtlrlL~~~~L~d~~~t~~~lVt~Pe~~~~~e 157 (217) T cd02035 80 GGEG-GLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAP-TGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYE 157 (217) T ss_pred HHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-CHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHH T ss_conf 0011-4567776159978999999999999854899889982898-5569998678872488876799995776217999 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHCC Q ss_conf 666777640012211445544202 Q gi|254780831|r 244 VKRAISMYQKMNIPIIGMIENMSY 267 (341) Q Consensus 244 a~r~~~~~~~~~~~i~GiV~NMs~ 267 (341) T Consensus 158 t~r~~~~L~~~gi~v~~vVvN~v~ 181 (217) T cd02035 158 TERAITELALYGIPVDAVVVNRVL 181 (217) T ss_pred HHHHHHHHHHCCCCCCEEEEECCC T ss_conf 999999999779988989895882 |
This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. |
| >cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA) | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-26 Score=194.72 Aligned_cols=168 Identities=22% Similarity=0.349 Sum_probs=111.8 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC--CCC---CCCC---CCCCCC---CC- Q ss_conf 20102446665425789999898723577506988224678765310002456--311---2334---457663---22- Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK--VEI---SDKK---FLKPKE---NY- 163 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~--~~~---~~~~---~i~p~~---~~- 163 (341) T Consensus 1 r~i~-~~GKGGVGKTT~AaalA~~lA~~G~kVLlvstDP-ahsLsd~f~~~~~~~~~~v~~~~nL~a~eid~~~~~~~~~ 78 (254) T cd00550 1 RYIF-FGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP-AHSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYR 78 (254) T ss_pred CEEE-EECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC-CCCHHHHHCCCCCCCCCEECCCCCCEEEEECHHHHHHHHH T ss_conf 9899-9689855489999999999996899499995898-6448898488667887110366884578728899999999 Q ss_pred -C-EEECCCCCC---CCCCCCCCCCCCCHH--HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH------------- Q ss_conf -3-032233343---552210001342024--78999867521377758997455644421000000------------- Q gi|254780831|r 164 -G-IKIMSMASL---VDENVAMIWRGPMVQ--SAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQ------------- 223 (341) Q Consensus 164 -g-i~~~s~g~l---~~~~~~~~~rg~~~~--~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~------------- 223 (341) T Consensus 79 ~~v~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~i~~~~~~~~yD~IViDtaP-TGht-LrlL~lP~~l~~~~~~L~ 156 (254) T cd00550 79 QEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAP-TGHT-LRLLSLPTVLSWAREILS 156 (254) T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-CHHH-HHHHHCHHHHHHHHHHCC T ss_conf 99999886322556688889998639858999999999999760699889988998-5679-987515699999998537 Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCC Q ss_conf 02234026742144311345666777640012211445544202 Q gi|254780831|r 224 KIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSY 267 (341) Q Consensus 224 ~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~ 267 (341) T Consensus 157 d~~~t~~~lV~~PE~~~v~Et~R~~~~L~~~~i~v~~vvvN~v~ 200 (254) T cd00550 157 DPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLL 200 (254) T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC T ss_conf 95655899997787216999999999999779998979995880 |
This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity. |
| >TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-25 Score=188.12 Aligned_cols=161 Identities=22% Similarity=0.395 Sum_probs=127.3 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC--------CCCCCCCCCCCEE Q ss_conf 42010244666542578999989872357750698822467876531000245631123--------3445766322303 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD--------KKFLKPKENYGIK 166 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~--------~~~i~p~~~~gi~ 166 (341) T Consensus 103 ~~~LaItS~~pGEGKS~vAaNLA~~~Aq~G~RvLLVDaDLRrP~lh~~f~l~~~~GLs~vL~g~~~l~~i~~~~~~~nL~ 182 (274) T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITHIPALENLS 182 (274) T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHCCCCCHHHEEECCCCCCEE T ss_conf 83899968999998999999999999967991999958888844779759999768788845999889905158989978 Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCCCHHHHCCCCCCEEEEECCCCCHHHHH Q ss_conf 223334355221000134202478999867521377758997455644--421000000022340267421443113456 Q gi|254780831|r 167 IMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGT--GDAHLTIAQKIPLSGVVIVSTPQDLALIDV 244 (341) Q Consensus 167 ~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~--gd~~lsl~~~~~~~~~iiVttP~~~s~~da 244 (341) T Consensus 183 VLpaG~~pp-nP~eL----L~s~~~~~ll~~l~-~~yD~IIiDTPPvl~~sDA~i-la~--~aDg~LlVvR~~~T~~~~l 253 (274) T TIGR03029 183 VLPAGAIPP-NPQEL----LARPAFTDLLNKVM-GDYDVVIVDTPSAEHSSDAQI-VAT--RARGTLIVSRVNETRLHEL 253 (274) T ss_pred EEECCCCCC-CHHHH----HHHHHHHHHHHHHH-HHCCEEEEECCCCCCCCHHHH-HHH--HCCEEEEEEECCCCCHHHH T ss_conf 996999998-97998----73589999999998-409999993898655434999-998--6897999996898889999 Q ss_pred HHHHHHHHCCCCCHHHHHHH Q ss_conf 66777640012211445544 Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIEN 264 (341) Q Consensus 245 ~r~~~~~~~~~~~i~GiV~N 264 (341) T Consensus 254 ~~a~~~L~~~g~~VlGvVLN 273 (274) T TIGR03029 254 TSLKEHLSGVGVRVVGAVLN 273 (274) T ss_pred HHHHHHHHHCCCCEEEEEEC T ss_conf 99999999779966899848 |
The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF). |
| >PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=183.84 Aligned_cols=162 Identities=15% Similarity=0.281 Sum_probs=128.7 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC--------CCCCCCCCCCCEE Q ss_conf 42010244666542578999989872357750698822467876531000245631123--------3445766322303 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD--------KKFLKPKENYGIK 166 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~--------~~~i~p~~~~gi~ 166 (341) T Consensus 531 ~kvi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~~ld 610 (726) T PRK09841 531 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFD 610 (726) T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCHHHHCCCCCCCCEE T ss_conf 86899977999997799999999999847995999828877710776159999987799838999889933027989989 Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCCCHHHHCCCCCCEEEEECCCCCHHHHH Q ss_conf 223334355221000134202478999867521377758997455644--421000000022340267421443113456 Q gi|254780831|r 167 IMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGT--GDAHLTIAQKIPLSGVVIVSTPQDLALIDV 244 (341) Q Consensus 167 ~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~--gd~~lsl~~~~~~~~~iiVttP~~~s~~da 244 (341) T Consensus 611 vl~aG~~p~nP-~el----L~s~~~~~ll~~l~-~~yD~IIiDtPPvl~v~Da-~~l~~--~~D~~l~Vvr~g~T~~~~~ 681 (726) T PRK09841 611 VITRGQVPPNP-SEL----LMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDA-AVVGR--SVGTSLLVARFGLNTAKEV 681 (726) T ss_pred EEECCCCCCCH-HHH----HCCHHHHHHHHHHH-HCCCEEEEECCCCCCCCHH-HHHHH--HCCEEEEEEECCCCCHHHH T ss_conf 98289999798-999----58769999999998-1399999919996534159-99999--7895999997996889999 Q ss_pred HHHHHHHHCCCCCHHHHHHHH Q ss_conf 667776400122114455442 Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENM 265 (341) Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NM 265 (341) T Consensus 682 ~~a~~~l~~~~~~v~G~vlN~ 702 (726) T PRK09841 682 SLSMQRLEQAGVNIKGAILNG 702 (726) T ss_pred HHHHHHHHHCCCCEEEEEECC T ss_conf 999999997899758999828 |
|
| >TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=184.20 Aligned_cols=160 Identities=21% Similarity=0.388 Sum_probs=129.2 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCC-CC--------CCCCCCCCCCC-CCE Q ss_conf 201024466654257899998987235775069882246787653100024563-11--------23344576632-230 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKV-EI--------SDKKFLKPKEN-YGI 165 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~-~~--------~~~~~i~p~~~-~gi 165 (341) T Consensus 20 K~l~itS~~~~eGKsT~S~NiA~~fAqaGyKTLlIDgD~R~sv~~~~Fk~~n~~~GLtn~L~g~~dl~~~i~~T~isenL 99 (207) T TIGR01007 20 KVLLITSVKAGEGKSTTSANIAVSFAQAGYKTLLIDGDMRNSVMSGTFKSQNKIKGLTNFLSGNTDLSDAICETNISENL 99 (207) T ss_pred EEEEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHCCCCCCCC T ss_conf 58998411058886241078899998568558887546586603678658887656333221454533342026546787 Q ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC---CCCCHHHHCCCCCCEEEEECCCCCHHH Q ss_conf 32233343552210001342024789998675213777589974556444---210000000223402674214431134 Q gi|254780831|r 166 KIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG---DAHLTIAQKIPLSGVVIVSTPQDLALI 242 (341) Q Consensus 166 ~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g---d~~lsl~~~~~~~~~iiVttP~~~s~~ 242 (341) T Consensus 100 ~vi~sG~vPPNPt~L-----L~s~~F~~l~e~~~-~~fD~iiiDTPP-ig~V~DAai-~a~--~~d~~~LV~~A~~~~k~ 169 (207) T TIGR01007 100 DVITSGPVPPNPTEL-----LQSSNFKTLIETLR-KYFDYIIIDTPP-IGTVIDAAI-IAR--AVDASILVTDAGKIKKR 169 (207) T ss_pred EEECCCCCCCCHHHH-----HHHHHHHHHHHHHH-CCCCEEEEEECC-CCHHHHHHH-HHH--HHCCEEEEEECCCCCHH T ss_conf 275178878775478-----88899999999987-168889995188-666788999-998--72977988722532646 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 56667776400122114455442 Q gi|254780831|r 243 DVKRAISMYQKMNIPIIGMIENM 265 (341) Q Consensus 243 da~r~~~~~~~~~~~i~GiV~NM 265 (341) T Consensus 170 ~v~KAK~~LEq~G~~~LGvvLNK 192 (207) T TIGR01007 170 EVKKAKEQLEQAGSKFLGVVLNK 192 (207) T ss_pred HHHHHHHHHHHHCCCEEEEEECC T ss_conf 78999999986178411588888 |
The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process. |
| >PRK11519 tyrosine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-24 Score=179.80 Aligned_cols=162 Identities=19% Similarity=0.313 Sum_probs=128.6 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC--------CCCCCCCCCCCEE Q ss_conf 42010244666542578999989872357750698822467876531000245631123--------3445766322303 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD--------KKFLKPKENYGIK 166 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~--------~~~i~p~~~~gi~ 166 (341) T Consensus 526 ~~vi~vTS~~pgEGKSt~a~nLA~~~A~~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~i~~~~~~~l~ 605 (720) T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIANFD 605 (720) T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHHCCCCCCCCEE T ss_conf 76799970899997899999999999837991999938777701677539999998599807999789970357989989 Q ss_pred ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--CCCCCHHHHCCCCCCEEEEECCCCCHHHHH Q ss_conf 223334355221000134202478999867521377758997455644--421000000022340267421443113456 Q gi|254780831|r 167 IMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGT--GDAHLTIAQKIPLSGVVIVSTPQDLALIDV 244 (341) Q Consensus 167 ~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~--gd~~lsl~~~~~~~~~iiVttP~~~s~~da 244 (341) T Consensus 606 vl~~G~~~pnp~el-----L~s~~~~~ll~~l~-~~yD~IIiDtpPv~~v~Da-~~la~--~aD~~l~Vvr~g~t~~~~v 676 (720) T PRK11519 606 LIPRGQVPPNPSEL-----LMSERFAELVAWAS-KNYDLVLIDTPPILAVTDA-AIVGR--HVGTTLMVARYAVNTLKEV 676 (720) T ss_pred EECCCCCCCCHHHH-----HCCHHHHHHHHHHH-HHCCEEEEECCCCCCCHHH-HHHHH--HCCEEEEEEECCCCCHHHH T ss_conf 97699999498998-----38759999999998-5299999939996523589-99999--7897999998995789999 Q ss_pred HHHHHHHHCCCCCHHHHHHHH Q ss_conf 667776400122114455442 Q gi|254780831|r 245 KRAISMYQKMNIPIIGMIENM 265 (341) Q Consensus 245 ~r~~~~~~~~~~~i~GiV~NM 265 (341) T Consensus 677 ~~a~~~l~~~~~~v~G~VlN~ 697 (720) T PRK11519 677 ETSLSRFEQNGIPVKGVILNS 697 (720) T ss_pred HHHHHHHHHCCCCEEEEEECC T ss_conf 999999996899748999889 |
|
| >pfam02374 ArsA_ATPase Anion-transporting ATPase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=137.78 Aligned_cols=161 Identities=22% Similarity=0.330 Sum_probs=99.8 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCC--CCCCCCCCCCCCCCCCCEEECCC--- Q ss_conf 2010244666542578999989872357750698822467876531000245--63112334457663223032233--- Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISG--KVEISDKKFLKPKENYGIKIMSM--- 170 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~--~~~~~~~~~i~p~~~~gi~~~s~--- 170 (341) T Consensus 2 r~i~~-~GKGGVGKTT~AaA~A~~~A~~G~rvLlvStDP-AhsL~D~~~~~~g~~pt~V~~-------~~nL~a~eiD~~ 72 (304) T pfam02374 2 RWIFF-GGKGGVGKTTVSCATAVRLSEQGKKVLLVSTDP-AHSLSDSFNQKFGHEPTKIKG-------VENLSAMEIDPQ 72 (304) T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC-CCHHHHHHCCCCCCCCEEECC-------CCCCEEEEECHH T ss_conf 19999-579857489999999999995899299994697-214889848867999615158-------898279872789 Q ss_pred --------------C-CC----CCC---CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHH------- Q ss_conf --------------3-43----552---210001342024789998675213777589974556444210000------- Q gi|254780831|r 171 --------------A-SL----VDE---NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTI------- 221 (341) Q Consensus 171 --------------g-~l----~~~---~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl------- 221 (341) T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~al~~i~~~~~~~~yD~VV~DtaP-TGht-LrlL~lP~~l 150 (304) T pfam02374 73 MELEEYRGEVQDPINAVLGADMLEGILAEELSSLPGIDEIASFDEFKKYMDEGEYDVVIFDTAP-TGHT-LRLLSLPTVL 150 (304) T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-CHHH-HHHHCCHHHH T ss_conf 9999999999999986512212667899998369989999999999999971788769966898-1779-9886168999 Q ss_pred -----------------------------------------------HHCC---CCCCEEEEECCCCCHHHHHHHHHHHH Q ss_conf -----------------------------------------------0002---23402674214431134566677764 Q gi|254780831|r 222 -----------------------------------------------AQKI---PLSGVVIVSTPQDLALIDVKRAISMY 251 (341) Q Consensus 222 -----------------------------------------------~~~~---~~~~~iiVttP~~~s~~da~r~~~~~ 251 (341) T Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~f~lV~~pe~~~i~Et~R~~~~L 230 (304) T pfam02374 151 SWYLEKIIKLKNKIGPLAKPFKGPMGGSCLPEALESLEETKEQIEKAREILSDPERTSFRLVCIPEKMSLYETERAIQEL 230 (304) T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHH T ss_conf 99999999899988999887740135676278999999999999999998549897499998379843799999999999 Q ss_pred HCCCCCHHHHHHHHCC Q ss_conf 0012211445544202 Q gi|254780831|r 252 QKMNIPIIGMIENMSY 267 (341) Q Consensus 252 ~~~~~~i~GiV~NMs~ 267 (341) T Consensus 231 ~~~~i~v~~vvvNrvl 246 (304) T pfam02374 231 AKYGIDVDAVIVNQVL 246 (304) T ss_pred HHCCCCCCEEEECCCC T ss_conf 9779988979880778 |
This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. |
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-17 Score=137.27 Aligned_cols=101 Identities=24% Similarity=0.413 Sum_probs=85.5 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 010244666542578999989872357-7506988224678765310002456311233445766322303223334355 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNK-GKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~-G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341) T Consensus 1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqfGd------------------------------------- 43 (106) T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106) T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC------------------------------------- T ss_conf 9899728998668999999999999841993899965467799------------------------------------- Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCC Q ss_conf 22100013420247899986752137775899745564442100000002234026742144311345666777640012 Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMN 255 (341) Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~ 255 (341) T Consensus 44 ----------------------------d~VVvD~~~~~~~~~~~al--~~ad~i~lv~~~~lp~lrn~kr~l~~l~~l~ 93 (106) T cd03111 44 ----------------------------DYVVVDLGRSLDEVSLAAL--DQADRVFLVTQQDLPSIRNAKRLLELLRVLD 93 (106) T ss_pred ----------------------------CEEEECCCCCCCHHHHHHH--HHCCEEEEEECCCHHHHHHHHHHHHHHHHCC T ss_conf ----------------------------7899918655388999999--8679799980677489997999999999849 Q ss_pred CC---HHHHHHH Q ss_conf 21---1445544 Q gi|254780831|r 256 IP---IIGMIEN 264 (341) Q Consensus 256 ~~---i~GiV~N 264 (341) T Consensus 94 ~~~~~ki~lVvN 105 (106) T cd03111 94 YSLPAKIELVLN 105 (106) T ss_pred CCCCCCEEEEEC T ss_conf 997365699857 |
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >pfam07015 VirC1 VirC1 protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-16 Score=130.49 Aligned_cols=131 Identities=24% Similarity=0.323 Sum_probs=82.2 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341) T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~V~liD~Dpq~s~~~W~~~a------~~~~~~~~~----~~v~----~~~ 67 (231) T pfam07015 2 QLITFCSFKGGAGKTTALMGLCSALASDGKRVALFEADENRPLTKWRENA------LRKGTWDPA----CEIF----NAD 67 (231) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH------HHCCCCCCC----CCEE----CCC T ss_conf 37999617998659999999999999689959999689986889999987------646888876----5222----056 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHC Q ss_conf 221000134202478999867521377758997455644421000000022340267421443113456667776400 Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQK 253 (341) Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~ 253 (341) T Consensus 68 -~~------~~l~~~~~~~----~~~~yD~VIIDtpg~~s~~~~~AI--~~ADlVLIP~qpSplD~~~a~~t~~~i~~ 132 (231) T pfam07015 68 -EL------PLLEQAYEHA----EGSGFDYALADTHGGSSELNNTII--ASSDLLLIPTMLTPLDIDEALATYRYVIE 132 (231) T ss_pred -CH------HHHHHHHHHH----HHCCCCEEEECCCCCCCHHHHHHH--HHCCEEEECCCCCHHHHHHHHHHHHHHHH T ss_conf -60------1589999988----657999899839985758999999--97898997789982339999999999999 |
This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA. |
| >cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=129.82 Aligned_cols=84 Identities=38% Similarity=0.581 Sum_probs=70.7 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341) T Consensus 1 vi~~~n~KGGvGKtt~~~~la~~~a~~g~~vl~iD~DpQ----------------------------------------- 39 (104) T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ----------------------------------------- 39 (104) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCC----------------------------------------- T ss_conf 999973899876899999999999977992999977988----------------------------------------- Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHH Q ss_conf 2100013420247899986752137775899745564442100000002234026742144311345666777 Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAIS 249 (341) Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~ 249 (341) T Consensus 40 --------------------------yD~iiIDtpp~~~~~~~~--al~~aD~viiP~~p~~~~~~~~~~~~~ 84 (104) T cd02042 40 --------------------------YDYIIIDTPPSLGLLTRN--ALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104) T ss_pred --------------------------CCEEEEECCCCCCHHHHH--HHHHCCEEEEECCCCHHHHHHHHHHHH T ss_conf --------------------------888999794999899999--999789999983698899999999999 |
ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. |
| >PRK13849 putative crown gall tumor protein VirC1; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.1e-16 Score=126.23 Aligned_cols=131 Identities=21% Similarity=0.297 Sum_probs=80.0 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233445766322303223334355 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVD 175 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~ 175 (341) T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W-~e~---a--~~~~~~~~~----~~v----~~~~ 67 (231) T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRW-KEN---A--LRSNTWDPA----CEV----YAAD 67 (231) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH-HHH---H--HHCCCCCCC----CCE----EECC T ss_conf 3799961899876999999999999978995999968998688999-987---6--525898877----523----4056 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHC Q ss_conf 221000134202478999867521377758997455644421000000022340267421443113456667776400 Q gi|254780831|r 176 ENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQK 253 (341) Q Consensus 176 ~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~ 253 (341) T Consensus 68 -~~~------~l~~~~e~----~~~~~~D~VIIDtpg~~s~~~~~Ai--~~ADLVLIP~qPSp~D~~~a~~tv~~i~~ 132 (231) T PRK13849 68 -ELP------LLEAAYED----AELQGFDYALADTHGGSSELNNTII--ASSNLLLIPTMLTPLDIDEALSTYRYVIE 132 (231) T ss_pred -CHH------HHHHHHHH----HHHCCCCEEEECCCCCCCHHHHHHH--HHCCEEEECCCCCHHHHHHHHHHHHHHHH T ss_conf -525------78999988----7536998899818997758999999--97898997799986679999999999999 |
|
| >TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-14 Score=117.49 Aligned_cols=153 Identities=24% Similarity=0.360 Sum_probs=96.0 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCEEC----CCCCCCC----------------CC-CC-- Q ss_conf 44666542578999989872357--750698822467876531000----2456311----------------23-34-- Q gi|254780831|r 101 ASGKGGVGKSTTVVNIACALKNK--GKNVAILDADVYGPSIPKLLK----ISGKVEI----------------SD-KK-- 155 (341) Q Consensus 101 ~SgKGGVGKSt~s~nLa~ala~~--G~~V~liDaDi~~ps~~~~lg----~~~~~~~----------------~~-~~-- 155 (341) T Consensus 2 ~gGKGGVGKTt~SaAtA~~lAe~qPGkkvLl~STDP-AHsL~D~F~~e~G~~~~kv~g~eNL~~~EIDp~~al~~y~~rv 80 (330) T TIGR00345 2 FGGKGGVGKTTISAATAIRLAEQQPGKKVLLVSTDP-AHSLSDVFEQELGHEPTKVKGVENLSAVEIDPQAALEEYRARV 80 (330) T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECC-CHHHHHHHHHHHCCCCCEEECCCCCEEEEECHHHHHHHHHHHH T ss_conf 778788238889999999998518997799984086-0027886113217773032058985555103789999879999 Q ss_pred -CC-CCCCCC-CEEE-------CCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHC---CCC---CCEEEEECCC Q ss_conf -45-766322-3032-------233-------34355221000134202478999867521---377---7589974556 Q gi|254780831|r 156 -FL-KPKENY-GIKI-------MSM-------ASLVDENVAMIWRGPMVQSAIMHMLHNVV---WGQ---LDFLLIDMPP 212 (341) Q Consensus 156 -~i-~p~~~~-gi~~-------~s~-------g~l~~~~~~~~~rg~~~~~~l~~~l~~~~---w~~---~D~liiD~pp 212 (341) T Consensus 81 f~~~~~i~~~~~~~~~~~l~~ql~~~~~~dltGsiPGiDE---------~~~F~~~~k~~~~~~~~e~etyD~vIfDTAP 151 (330) T TIGR00345 81 FKLKEQIKQNLSLGVVDMLEDQLEGAALSDLTGSIPGIDE---------IAAFDEFLKHMDEAELNERETYDVVIFDTAP 151 (330) T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHH---------HHHHHHHHHHHHHHHCCCCCCCCEEEEECCC T ss_conf 9999998606788732027999998777752279985889---------9999999987654321567623468871697 Q ss_pred CCCCCCCHHHHCC---------------------------------------------------------------CCCC Q ss_conf 4442100000002---------------------------------------------------------------2340 Q gi|254780831|r 213 GTGDAHLTIAQKI---------------------------------------------------------------PLSG 229 (341) Q Consensus 213 G~gd~~lsl~~~~---------------------------------------------------------------~~~~ 229 (341) T Consensus 152 -TGHT-LRLL~lP~~~~~~~~~~~k~~~~~g~~~~~~~~~Lpf~G~~~~l~~~~~l~~~~e~Ke~~~~~~~~l~DP~~T~ 229 (330) T TIGR00345 152 -TGHT-LRLLQLPEVLSKFLEKFIKLREKLGPMLKLFKELLPFMGAGESLEDDEALEKLEELKEQIEAAREVLSDPERTS 229 (330) T ss_pred -CHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCE T ss_conf -4677-75310023679999874356777889887664105789898878778999989999999999999724998516 Q ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 267421443113456667776400122114455442 Q gi|254780831|r 230 VVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENM 265 (341) Q Consensus 230 ~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NM 265 (341) T Consensus 230 f~~V~~pE~~~l~E~~R~~~~L~~Y~~~~~~vIvN~ 265 (330) T TIGR00345 230 FVLVVIPEKMSLYESERAHKELKKYGIKVDAVIVNQ 265 (330) T ss_pred EEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECC T ss_conf 888860262427899999999986498504478702 |
In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane. |
| >COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-14 Score=112.12 Aligned_cols=169 Identities=25% Similarity=0.393 Sum_probs=98.9 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCC--CCCC-CCCCCC---CCC---CCCCC-- Q ss_conf 201024466654257899998987235775069882246787653100024--5631-123344---576---63223-- Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKIS--GKVE-ISDKKF---LKP---KENYG-- 164 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~--~~~~-~~~~~~---i~p---~~~~g-- 164 (341) T Consensus 3 riv~-f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStD-PAhsL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~ 80 (322) T COG0003 3 RIVF-FTGKGGVGKTTIAAATAVKLAESGKKVLLVSTD-PAHSLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDE 80 (322) T ss_pred EEEE-EECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCHHHHHCCCCCCCHHHCCCCCCEEEECHHHHHHHHHHH T ss_conf 7999-936885458999999999999759907999848-98744765423047851125888754660689999999999 Q ss_pred E-EEC----CCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-------------------- Q ss_conf 0-322----3334--355221000134202478999867521377758997455644421-------------------- Q gi|254780831|r 165 I-KIM----SMAS--LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA-------------------- 217 (341) Q Consensus 165 i-~~~----s~g~--l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~-------------------- 217 (341) T Consensus 81 v~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaP-TG~TLRlL~lP~~~~~~~~~~~~~ 159 (322) T COG0003 81 VKDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAP-TGHTLRLLSLPEVLGWYLEKLFKP 159 (322) T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCC-HHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 9999974126554212578898609888999999999998752689889984897-087888741578899999852025 Q ss_pred C-----------CH-----H-----HHCC---------------C--CCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHH Q ss_conf 0-----------00-----0-----0002---------------2--340267421443113456667776400122114 Q gi|254780831|r 218 H-----------LT-----I-----AQKI---------------P--LSGVVIVSTPQDLALIDVKRAISMYQKMNIPII 259 (341) Q Consensus 218 ~-----------ls-----l-----~~~~---------------~--~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~ 259 (341) T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~v~ 239 (322) T COG0003 160 RRKRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGIPVD 239 (322) T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHH T ss_conf 78999976421144457767278999999999999999998750777883799966101155889999999987598643 Q ss_pred HHHHHHCC Q ss_conf 45544202 Q gi|254780831|r 260 GMIENMSY 267 (341) Q Consensus 260 GiV~NMs~ 267 (341) T Consensus 240 ~vi~n~~~ 247 (322) T COG0003 240 AVIVNKIL 247 (322) T ss_pred EEEEECCC T ss_conf 15563136 |
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-12 Score=99.42 Aligned_cols=80 Identities=43% Similarity=0.731 Sum_probs=63.0 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC Q ss_conf 01024466654257899998987235775069882246787653100024563112334457663223032233343552 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDE 176 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~ 176 (341) T Consensus 1 ~i~~~-~~kGvGKTT~a~~La~~la~~g~~Vl~vD--------------------------------------------- 34 (99) T cd01983 1 VIVVT-GKGGVGKTTLAANLAAALAKRGKRVLLID--------------------------------------------- 34 (99) T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEC--------------------------------------------- T ss_conf 98985-89977689999999999998899699986--------------------------------------------- Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCH-HHHCCCCCCEEEEECCCCCHHHHHHHHHH Q ss_conf 21000134202478999867521377758997455644421000-00002234026742144311345666777 Q gi|254780831|r 177 NVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLT-IAQKIPLSGVVIVSTPQDLALIDVKRAIS 249 (341) Q Consensus 177 ~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~ls-l~~~~~~~~~iiVttP~~~s~~da~r~~~ 249 (341) T Consensus 35 ---------------------------d~iiiD~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 81 (99) T cd01983 35 ---------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTE 81 (99) T ss_pred ---------------------------CCEEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHH T ss_conf ---------------------------71788589988846899998787589589965984889999999999 |
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >TIGR01005 eps_transp_fam exopolysaccharide transport protein family; InterPro: IPR005700 The bacterial exopolysaccharide transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-11 Score=95.41 Aligned_cols=163 Identities=20% Similarity=0.292 Sum_probs=109.9 Q ss_pred C-CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCC---CCCCCC--CC---CCCEE Q ss_conf 2-010244666542578999989872357750698822467876531000245631123---344576--63---22303 Q gi|254780831|r 96 K-FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISD---KKFLKP--KE---NYGIK 166 (341) Q Consensus 96 ~-iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---~~~i~p--~~---~~gi~ 166 (341) T Consensus 561 ~Pvv~~~~p~p~~Gks~i~an~aaliA~ggkR~llidad~rk~~l~q~~~~~~~~GL~d~LaG~rs~~~~~~~~~~~~l~ 640 (778) T TIGR01005 561 EPVVALASPLPDVGKSIIEANLAALIAAGGKRVLLIDADIRKAALSQILVKAEKSGLLDLLAGERSLELDVKAEVAAKLD 640 (778) T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCH T ss_conf 87588568888665688999999998326871787326776055564421478885375564246566303402367711 Q ss_pred ECCCC---CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCC-EE-EEECCCCCHH Q ss_conf 22333---4355221000134202478999867521377758997455644421000000022340-26-7421443113 Q gi|254780831|r 167 IMSMA---SLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSG-VV-IVSTPQDLAL 241 (341) Q Consensus 167 ~~s~g---~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~-~i-iVttP~~~s~ 241 (341) T Consensus 641 ~l~~GGas~~~h~~~eL-----Laspa~~~l~~~ar-~~~D~vvvd~~~~~p--V~d~~a~a~la~~~lslvt~~~r~~~ 712 (778) T TIGR01005 641 ILDAGGASLLRHNSSEL-----LASPAMVELVENAR-SAYDLVVVDVAAVAP--VADAKALAALADLVLSLVTEYDRSVV 712 (778) T ss_pred HHHCCCCCCCCCCCCHH-----HCCHHHHHHHHHHH-HHCCEEEECCCHHHH--HHHHHHHHHCCCEEEHHEEEECCEEH T ss_conf 23347612478884153-----21668899999886-518857745531248--99999974224200200111144104 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHC Q ss_conf 4566677764001221144554420 Q gi|254780831|r 242 IDVKRAISMYQKMNIPIIGMIENMS 266 (341) Q Consensus 242 ~da~r~~~~~~~~~~~i~GiV~NMs 266 (341) T Consensus 713 ~~~r~~~~~~~~~n~~v~gV~ln~l 737 (778) T TIGR01005 713 ELVRELLKSLSRLNSEVLGVVLNKL 737 (778) T ss_pred HHHHHHHHHHHHCCCEEEEEEECCC T ss_conf 4428877544531860456650455 |
Detailed molecular characterization and gene fusion analysis revealed at least seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport. |
| >KOG2825 consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.7e-08 Score=73.13 Aligned_cols=160 Identities=26% Similarity=0.352 Sum_probs=88.7 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCC--CCCCCC---CCC---CCCCCCCCCEEE Q ss_conf 201024466654257899998987235775069882246787653100024--563112---334---457663223032 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKIS--GKVEIS---DKK---FLKPKENYGIKI 167 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~--~~~~~~---~~~---~i~p~~~~gi~~ 167 (341) T Consensus 20 KwifV-GGKGGVGKTTcs~sLAvqla~~r~~vLiISTDP-AHNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~--e~~~ 95 (323) T KOG2825 20 KWIFV-GGKGGVGKTTCSCSLAVQLAKVRESVLIISTDP-AHNLSDAFSQKFTKTPTKVEGFENLFAMEIDPNV--EMGD 95 (323) T ss_pred EEEEE-CCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHHCCCCCCCCCHHHHEEEECCCCH--HHHH T ss_conf 69997-676776765312689999861688647861685-3116788887751798303572231023228724--4415 Q ss_pred C------------C--CCCCCCCCCCCCCCC---CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHH------- Q ss_conf 2------------3--334355221000134---202478999867521377758997455644421000000------- Q gi|254780831|r 168 M------------S--MASLVDENVAMIWRG---PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQ------- 223 (341) Q Consensus 168 ~------------s--~g~l~~~~~~~~~rg---~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~------- 223 (341) T Consensus 96 ~~~m~~~~~~n~~~~g~g~l~e--~~~~~Pgideams---fae~~klvk~~~F~~vVFDTAP-TGHT-LRlL~fP~~lek 168 (323) T KOG2825 96 MPEMFGNAANNEGSDGKGMLQE--LANAFPGIDEAMS---FAEVMKLVKGMNFDVVVFDTAP-TGHT-LRLLQFPTTLEK 168 (323) T ss_pred HHHHHHCCCCCCCCCCHHHHHH--HHHCCCCHHHHHH---HHHHHHHHHCCCCCEEEECCCC-CCCE-EHHHCCCHHHHH T ss_conf 6787530021246652327999--8731888057775---8999988630664069951588-7641-025215268999 Q ss_pred -----------------------------------C--------------C---CCCCEEEEECCCCCHHHHHHHHHHHH Q ss_conf -----------------------------------0--------------2---23402674214431134566677764 Q gi|254780831|r 224 -----------------------------------K--------------I---PLSGVVIVSTPQDLALIDVKRAISMY 251 (341) Q Consensus 224 -----------------------------------~--------------~---~~~~~iiVttP~~~s~~da~r~~~~~ 251 (341) T Consensus 169 ~lgKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL 248 (323) T KOG2825 169 GLGKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQEL 248 (323) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHH T ss_conf 99999889988788999876352545577778999999999999999997079987259998778888688899999999 Q ss_pred HCCCCCHHHHHHHHC Q ss_conf 001221144554420 Q gi|254780831|r 252 QKMNIPIIGMIENMS 266 (341) Q Consensus 252 ~~~~~~i~GiV~NMs 266 (341) T Consensus 249 ~k~~idthnIIVNQL 263 (323) T KOG2825 249 AKQGIDTHNIIVNQL 263 (323) T ss_pred HHCCCCCCCEEEEEC T ss_conf 864886112013302 |
|
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.6e-05 Score=53.18 Aligned_cols=132 Identities=22% Similarity=0.317 Sum_probs=74.8 Q ss_pred CCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCCCEECCCCCCCCCCCCCCCCCC-CCCEEECC Q ss_conf 4654201024466654257899998987235775069882246787-653100024563112334457663-22303223 Q gi|254780831|r 92 LNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP-SIPKLLKISGKVEISDKKFLKPKE-NYGIKIMS 169 (341) Q Consensus 92 ~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p-s~~~~lg~~~~~~~~~~~~i~p~~-~~gi~~~s 169 (341) T Consensus 48 tG~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR--i------RM~~~~~~~~vFiRs 118 (323) T COG1703 48 TGNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR--I------RMQRLAVDPGVFIRS 118 (323) T ss_pred CCCCCEEEEC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCH--H------HHHHHCCCCCEEEEE T ss_conf 7998378731-799886688999999999977967899998899998785301207--6------677644699817842 Q ss_pred CCCCCCCCCCCCCCCC--CHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCCHHHHCCCCCCEEEEECCCCCHHHHHH Q ss_conf 3343552210001342--024789998675213777589974556444--210000000223402674214431134566 Q gi|254780831|r 170 MASLVDENVAMIWRGP--MVQSAIMHMLHNVVWGQLDFLLIDMPPGTG--DAHLTIAQKIPLSGVVIVSTPQDLALIDVK 245 (341) Q Consensus 170 ~g~l~~~~~~~~~rg~--~~~~~l~~~l~~~~w~~~D~liiD~ppG~g--d~~lsl~~~~~~~~~iiVttP~~~s~~da~ 245 (341) T Consensus 119 ~~s----------rG~lGGlS~at~~~i~~ldAaG~DvIIVETV-GvGQsev~--I~~~--aDt~~~v~~pg~GD~~Q~i 183 (323) T COG1703 119 SPS----------RGTLGGLSRATREAIKLLDAAGYDVIIVETV-GVGQSEVD--IANM--ADTFLVVMIPGAGDDLQGI 183 (323) T ss_pred CCC----------CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC-CCCCCHHH--HHHH--CCEEEEEECCCCCCHHHHH T ss_conf 687----------7651016688999999998618988999814-78841557--7652--1668999657888278888 Q ss_pred HH Q ss_conf 67 Q gi|254780831|r 246 RA 247 (341) Q Consensus 246 r~ 247 (341) T Consensus 184 K~ 185 (323) T COG1703 184 KA 185 (323) T ss_pred HH T ss_conf 74 |
|
| >TIGR00347 bioD dethiobiotin synthase; InterPro: IPR004472 The enzyme is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP) | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.5e-05 Score=56.98 Aligned_cols=154 Identities=19% Similarity=0.257 Sum_probs=85.1 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCC-CEECCCCCCCCCCCCCCCCCC----CC--CEEECCCCCCCC Q ss_conf 6654257899998987235775069882246787-653-100024563112334457663----22--303223334355 Q gi|254780831|r 104 KGGVGKSTTVVNIACALKNKGKNVAILDADVYGP-SIP-KLLKISGKVEISDKKFLKPKE----NY--GIKIMSMASLVD 175 (341) Q Consensus 104 KGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p-s~~-~~lg~~~~~~~~~~~~i~p~~----~~--gi~~~s~g~l~~ 175 (341) T Consensus 6 DT~VGKT~~ss~La~~lk~~G~~~g~~Kpv~tG~~~~~~dL~~-~------D~~~L~~~~~~~~~~~~Pi~~~P~~F~~P 78 (187) T TIGR00347 6 DTGVGKTVVSSALAKKLKKAGYSVGYYKPVQTGIEETAEDLRN-E------DTELLQNISGTALDLDGPIEVNPYAFALP 78 (187) T ss_pred ECCCCHHHHHHHHHHHHHHCCCCEEEECCHHCCCCCCCCCCHH-H------HHHHHHHHHHHHHHCCCCEEECCCCCCCC T ss_conf 4586178998999999997598525112000157667763105-6------79999876544321389844266320568 Q ss_pred --CCCCCCCCC-CCHHHHHHHHHH---HHCCCCCCEEEEECCCCCC---C-CCCHHH---HCC-----CCCCEEEEECCC Q ss_conf --221000134-202478999867---5213777589974556444---2-100000---002-----234026742144 Q gi|254780831|r 176 --ENVAMIWRG-PMVQSAIMHMLH---NVVWGQLDFLLIDMPPGTG---D-AHLTIA---QKI-----PLSGVVIVSTPQ 237 (341) Q Consensus 176 --~~~~~~~rg-~~~~~~l~~~l~---~~~w~~~D~liiD~ppG~g---d-~~lsl~---~~~-----~~~~~iiVttP~ 237 (341) T Consensus 79 lsP~~A~~~Eg~~i~~~~~~~~~~naye~l~~~~d~~lVEGAGG~~vP~~r~~~t~~D~i~~~ietsGh~L~~ilV~r~~ 158 (187) T TIGR00347 79 LSPHIAAKQEGRPIDLEELSKHLRNAYEELEEKYDFVLVEGAGGLCVPITREEYTVADLIKLLIETSGHQLPVILVVRVK 158 (187) T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 86258886177832688898788789999997179179983362426666124579999999985058820279874686 Q ss_pred CCHHHHHHHHHHHHHCCCCC--HHHHHHH Q ss_conf 31134566677764001221--1445544 Q gi|254780831|r 238 DLALIDVKRAISMYQKMNIP--IIGMIEN 264 (341) Q Consensus 238 ~~s~~da~r~~~~~~~~~~~--i~GiV~N 264 (341) T Consensus 159 LGtiNHt~Lt~~~~~~~Gl~shl~G~i~N 187 (187) T TIGR00347 159 LGTINHTLLTVEAARQTGLKSHLAGVILN 187 (187) T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEEEEEC T ss_conf 46067999999999977994443545619 |
The enzyme binds ATP and requires magnesium as a co-factor. The Thr residue at position seven of the seed alignment is necessary for the binding of ATP.; GO: 0004141 dethiobiotin synthase activity, 0005524 ATP binding, 0009102 biotin biosynthetic process. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.9e-05 Score=52.15 Aligned_cols=130 Identities=26% Similarity=0.367 Sum_probs=72.8 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC-CCCEECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCC Q ss_conf 010244666542578999989872357750698822467876-5310002456311233445766-32230322333435 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS-IPKLLKISGKVEISDKKFLKPK-ENYGIKIMSMASLV 174 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps-~~~~lg~~~~~~~~~~~~i~p~-~~~gi~~~s~g~l~ 174 (341) T Consensus 1 viGit-G~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLG--------DRiRm~~~~~~~~vfiRs~at-- 69 (148) T cd03114 1 VIGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILG--------DRIRMERHASDPGVFIRSLAT-- 69 (148) T ss_pred CEEEC-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHH--------HHHHHHHHCCCCCEEEEECCC-- T ss_conf 97625-8997878999999999999789837999968887866862032--------354534415799836863466-- Q ss_pred CCCCCCCCCCC--CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHH Q ss_conf 52210001342--024789998675213777589974556444210000000223402674214431134566677 Q gi|254780831|r 175 DENVAMIWRGP--MVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341) Q Consensus 175 ~~~~~~~~rg~--~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341) T Consensus 70 --------rg~~ggla~~~~~~i~~l~~~g~D~IiIETv-GvGQse~~i~~--~aD~~i~v~~p~~GD~iQ~~K~g 134 (148) T cd03114 70 --------RGFLGGLSRATPEVIRVLDAAGFDVIIVETV-GVGQSEVDIAS--MADTTVVVMAPGAGDDIQAIKAG 134 (148) T ss_pred --------CCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCCCHHHHHH--HCCEEEEEECCCCCCHHHHCCCC T ss_conf --------6654204688999999999759998999748-77756026554--35669999636887377611228 |
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >pfam03308 ArgK ArgK protein | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00018 Score=49.86 Aligned_cols=132 Identities=24% Similarity=0.319 Sum_probs=74.2 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCCCEECCCCCCCCCCCCCCCC-CCCCCEEECCCCC Q ss_conf 4201024466654257899998987235775069882246787-6531000245631123344576-6322303223334 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP-SIPKLLKISGKVEISDKKFLKP-KENYGIKIMSMAS 172 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p-s~~~~lg~~~~~~~~~~~~i~p-~~~~gi~~~s~g~ 172 (341) T Consensus 29 a~~iGiT-G~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~--------RM~~~~~~~~vfiRs~~s 99 (267) T pfam03308 29 AHRVGIT-GVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRT--------RMQRLAVDPGAFIRSSPS 99 (267) T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHH--------HHHHHCCCCCEEEEECCC T ss_conf 5599876-8998879999999999999689868999978999888863001077--------776505899858864577 Q ss_pred CCCCCCCCCCCCCC--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHH Q ss_conf 35522100013420--24789998675213777589974556444210000000223402674214431134566677 Q gi|254780831|r 173 LVDENVAMIWRGPM--VQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAI 248 (341) Q Consensus 173 l~~~~~~~~~rg~~--~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~ 248 (341) T Consensus 100 ----------rg~lGGls~~t~~~i~lleaaGfD~IivETV-GVGQsE~~v~~~a--D~~llv~~Pg~GDeiQ~iKaG 164 (267) T pfam03308 100 ----------RGALGGLSRATREAILLLDAAGFDVIIIETV-GVGQSEVDIANMA--DTFVLVTIPGGGDDLQGIKAG 164 (267) T ss_pred ----------CCCCCCCCHHHHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHHHC--CEEEEEECCCCCHHHHHHHHH T ss_conf ----------8888871476999999999779999999247-7775303555415--768999558876088898753 |
The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems. |
| >TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0031 Score=41.55 Aligned_cols=145 Identities=21% Similarity=0.310 Sum_probs=83.8 Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCEECC-------C--CCCCCCCCCCCCCCCC Q ss_conf 65420102446665425789999898723577506988224678765-310002-------4--5631123344576632 Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI-PKLLKI-------S--GKVEISDKKFLKPKEN 162 (341) Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~-~~~lg~-------~--~~~~~~~~~~i~p~~~ 162 (341) T Consensus 36 GnA~~vG~T-G~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~pt 114 (333) T TIGR00750 36 GNAHVVGIT-GVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPT 114 (333) T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCC T ss_conf 790787664-6888857779999989997659768999887975975514545688775442222332289856767766 Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHH--HHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCH Q ss_conf 23032233343552210001342024789998--6752137775899745564442100000002234026742144311 Q gi|254780831|r 163 YGIKIMSMASLVDENVAMIWRGPMVQSAIMHM--LHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLA 240 (341) Q Consensus 163 ~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~--l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s 240 (341) T Consensus 115 rG~l----GG--------------ls~at~~~~~lldA~--G~DVI~vETV-GVGQSEVdi~~~a--DT~v~v~~pg~GD 171 (333) T TIGR00750 115 RGSL----GG--------------LSKATRELVKLLDAA--GYDVILVETV-GVGQSEVDIINMA--DTFVVVTIPGTGD 171 (333) T ss_pred CCCH----HH--------------HHHHHHHHHHHHHHC--CCCEEEEEEE-CCCHHHHHHHHHH--CEEEEEECCCCCC T ss_conf 6752----57--------------879999999999863--8987999841-5752487887341--5058985488783 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC Q ss_conf 34566677764001221144554420 Q gi|254780831|r 241 LIDVKRAISMYQKMNIPIIGMIENMS 266 (341) Q Consensus 241 ~~da~r~~~~~~~~~~~i~GiV~NMs 266 (341) T Consensus 172 d~Q~iKaG~m-Eia--DI--~VVNKa 192 (333) T TIGR00750 172 DVQGIKAGVM-EIA--DI--YVVNKA 192 (333) T ss_pred HHHHHHHHHH-EEE--EE--EEEECC T ss_conf 4666654430-232--48--788168 |
In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.. |
| >KOG1532 consensus | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.02 Score=36.11 Aligned_cols=157 Identities=23% Similarity=0.332 Sum_probs=81.3 Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCC---CCCCCEEECC Q ss_conf 6542010244666542578999989872357750698822467876531000245631123344576---6322303223 Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKP---KENYGIKIMS 169 (341) Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p---~~~~gi~~~s 169 (341) T Consensus 17 ~~p~~ilVv-GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI-~Ts 94 (366) T KOG1532 17 QRPVIILVV-GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI-VTS 94 (366) T ss_pred CCCCEEEEE-ECCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCH-HHH T ss_conf 687079999-447788413999999998623699808867888854888667756654309999998388998640-335 Q ss_pred CCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCC--------CCC-CCHHHHCCCCCCEEEEECCCCC Q ss_conf 334-355221000134202478999867521377758997455644--------421-0000000223402674214431 Q gi|254780831|r 170 MAS-LVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGT--------GDA-HLTIAQKIPLSGVVIVSTPQDL 239 (341) Q Consensus 170 ~g~-l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~--------gd~-~lsl~~~~~~~~~iiVttP~~~ 239 (341) T Consensus 95 LNLF~tk~dq-----------v-~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~ 161 (366) T KOG1532 95 LNLFATKFDQ-----------V-IELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRST 161 (366) T ss_pred HHHHHHHHHH-----------H-HHHHHHHH-CCCCEEEECCCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEECCCCCC T ss_conf 8999987899-----------9-99999742-204779974888068998427850158667613985999994477678 Q ss_pred HHHH----HHHHHHHHHCCCCCHHHHHHHH Q ss_conf 1345----6667776400122114455442 Q gi|254780831|r 240 ALID----VKRAISMYQKMNIPIIGMIENM 265 (341) Q Consensus 240 s~~d----a~r~~~~~~~~~~~i~GiV~NM 265 (341) T Consensus 162 ~p~tFMSNMlYAcSilyktklp~i-vvfNK 190 (366) T KOG1532 162 SPTTFMSNMLYACSILYKTKLPFI-VVFNK 190 (366) T ss_pred CCHHHHHHHHHHHHHHHHCCCCEE-EEEEC T ss_conf 841699889999999986268769-99714 |
|
| >TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.097 Score=31.59 Aligned_cols=131 Identities=24% Similarity=0.488 Sum_probs=79.4 Q ss_pred CCCEECCCCCCCC----CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECC- Q ss_conf 4201024466654----25789999898723577506988224678765310002456311233445766322303223- Q gi|254780831|r 95 KKFVAVASGKGGV----GKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMS- 169 (341) Q Consensus 95 ~~iiav~SgKGGV----GKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s- 169 (341) T Consensus 4 ~KyifVT---GGV~SslGKGI~AAS~grLL~~~gl~Vt~iKiDPYi-------N~D-------pGTMsP~qHGEVFVt~D 66 (571) T TIGR00337 4 MKYIFVT---GGVVSSLGKGITAASLGRLLKARGLKVTIIKIDPYI-------NID-------PGTMSPLQHGEVFVTDD 66 (571) T ss_pred CEEEEEE---CCEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCC-------CCC-------CCCCCCCCCCEEEEECC T ss_conf 1179994---438504026789999999998558806576307755-------668-------76377863542788068 Q ss_pred -------CCC---CCCC-------------CCCCCC---CC----------CCHHHHHHHHHHHHCC-------CCCCEE Q ss_conf -------334---3552-------------210001---34----------2024789998675213-------777589 Q gi|254780831|r 170 -------MAS---LVDE-------------NVAMIW---RG----------PMVQSAIMHMLHNVVW-------GQLDFL 206 (341) Q Consensus 170 -------~g~---l~~~-------------~~~~~~---rg----------~~~~~~l~~~l~~~~w-------~~~D~l 206 (341) T Consensus 67 G~EtDLDLGHYERFl~~~l~~~~NiTTGkIY~~Vi~kERkGdYLG~TVQiIPHiTnEIK~~I~~~A~~P~eDtG~~~Dv~ 146 (571) T TIGR00337 67 GAETDLDLGHYERFLDTNLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAKKPVEDTGSGADVV 146 (571) T ss_pred CCEECCCCCCCHHHCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEE T ss_conf 87643666542122276677456610066899884103771214882798425546789999996037764567997479 Q ss_pred EEECCCCC-CCC------------------------CCHHHHCCCCCCE--EEEECCCCCHHHHHHH Q ss_conf 97455644-421------------------------0000000223402--6742144311345666 Q gi|254780831|r 207 LIDMPPGT-GDA------------------------HLTIAQKIPLSGV--VIVSTPQDLALIDVKR 246 (341) Q Consensus 207 iiD~ppG~-gd~------------------------~lsl~~~~~~~~~--iiVttP~~~s~~da~r 246 (341) T Consensus 147 IvEiG-GTVGDIEs~PFLEAiRQ~~~e~G~Env~~iHvTL---VP~i~aagE~KTKPTQhSVKeLRs 209 (571) T TIGR00337 147 IVEIG-GTVGDIESLPFLEAIRQLKKEVGRENVLFIHVTL---VPYIAAAGELKTKPTQHSVKELRS 209 (571) T ss_pred EEEEC-CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEE---CCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 99837-7000003625899999999873898679998400---263144874787751278999986 |
The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process. |
| >pfam10609 ParA ParA/MinD ATPase like | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-27 Score=199.18 Aligned_cols=81 Identities=62% Similarity=1.182 Sum_probs=79.3 Q ss_pred CCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCC Q ss_conf 75899745564442100000002234026742144311345666777640012211445544202458778866512477 Q gi|254780831|r 203 LDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGN 282 (341) Q Consensus 203 ~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~ 282 (341) T Consensus 1 LDyLiiD~PPGTgD~~ltl~~~~~~~~~ivVTTP~~ls~~dv~r~i~~~~~~~i~ilGiVENMs~~~c~~c~~~~~iFg~ 80 (81) T pfam10609 1 LDYLIIDMPPGTGDEHLTLAQSLPVDGAVIVTTPQDVALLDVRKAIDMFKKLNVPILGIVENMSYFVCPDCGEKIYIFGK 80 (81) T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCCC T ss_conf 98999948999678999999748857769980985999999999999999849961899977975368999987569899 Q ss_pred C Q ss_conf 6 Q gi|254780831|r 283 G 283 (341) Q Consensus 283 ~ 283 (341) T Consensus 81 g 81 (81) T pfam10609 81 G 81 (81) T ss_pred C T ss_conf 7 |
This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits. |
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.011 Score=37.80 Aligned_cols=90 Identities=21% Similarity=0.315 Sum_probs=52.3 Q ss_pred HHCCCCCCEEEEECCCCCCCCCCHHHHC-CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC Q ss_conf 5213777589974556444210000000-223402674214431134566677764001221144554420245877886 Q gi|254780831|r 197 NVVWGQLDFLLIDMPPGTGDAHLTIAQK-IPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGK 275 (341) Q Consensus 197 ~~~w~~~D~liiD~ppG~gd~~lsl~~~-~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~ 275 (341) T Consensus 58 ~~~~~~~~~n~iDtP-G~~dF~~e~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~i-ifiNK----mDre~a 131 (237) T cd04168 58 SFQWEDTKVNLIDTP-GHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNK----IDRAGA 131 (237) T ss_pred EEEECCEEEEEEECC-CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEE-EEEEC----CCCCCC T ss_conf 999899879998898-846566689889763481699996588822344999999998599859-98624----457899 Q ss_pred EEECCCCCHHHHHHHHHCCCE Q ss_conf 651247765899999847978 Q gi|254780831|r 276 KYDLFGNGGARFEAEKIGIPF 296 (341) Q Consensus 276 ~~~~fg~~~~~~~a~~~~i~~ 296 (341) T Consensus 132 d---f-~~~l~~i~~~l~~~~ 148 (237) T cd04168 132 D---L-EKVYQEIKEKLSSDI 148 (237) T ss_pred C---H-HHHHHHHHHHHCCCE T ss_conf 9---9-999999999978974 |
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.051 Score=33.45 Aligned_cols=60 Identities=18% Similarity=0.205 Sum_probs=33.5 Q ss_pred CEEEEECCCCCCCCCCHHHH-CCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 58997455644421000000-022340267421443113456667776400122114455442 Q gi|254780831|r 204 DFLLIDMPPGTGDAHLTIAQ-KIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENM 265 (341) Q Consensus 204 D~liiD~ppG~gd~~lsl~~-~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NM 265 (341) T Consensus 68 ~in~iDtP-Gh~dF~~~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p~i-vviNK 128 (179) T cd01890 68 LLNLIDTP-GHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEII-PVINK 128 (179) T ss_pred EEEEEECC-CCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEE-EEEEC T ss_conf 89999899-864517789889975442789986477873748999999987699889-99865 |
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-21 Score=160.87 Aligned_cols=192 Identities=22% Similarity=0.344 Sum_probs=131.0 Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCC-C Q ss_conf 996687847899999999999860676342355032223433322234654201024466654257899998987235-7 Q gi|254780831|r 45 ITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKN-K 123 (341) Q Consensus 45 l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~-~ 123 (341) T Consensus 2 v~~~~P~s~~aEa~R~lRt~l~~~~~~~------------~~~-----~~~kvi~VTS~~pgeGKTtva~nLA~~lA~~~ 64 (207) T TIGR03018 2 ITPNSPRSRIAEEFRKIKRPLLANAFSA------------NRK-----KNNNLIMVTSSLPGEGKSFTAINLAISLAQEY 64 (207) T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHC------------CCC-----CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHC T ss_conf 6458999989999999999876641010------------346-----78809999789999988999999999999724 Q ss_pred CCEEEEEECCCCCCCCCCEECCCCCCCCCC---------CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHH Q ss_conf 750698822467876531000245631123---------34457663223032233343552210001342024789998 Q gi|254780831|r 124 GKNVAILDADVYGPSIPKLLKISGKVEISD---------KKFLKPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHM 194 (341) Q Consensus 124 G~~V~liDaDi~~ps~~~~lg~~~~~~~~~---------~~~i~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~ 194 (341) T Consensus 65 ~~~VLLVDaDlr~p~l~~~l~~~~~~Gl~d~L~~~~~~l~~~i~~~~~~~l~vlpag~~~~~~~~l-----l~s~~~~~l 139 (207) T TIGR03018 65 DKTVLLIDADLRRPSLHRTLGLEAEPGLSDCLLDPVLDLADVLVPTNIGRLSLLPAGRRHPNPTEL-----LASQRMRSL 139 (207) T ss_pred CCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHCCCCCCHHHHEECCCCCCEEEEECCCCCCCHHHH-----HHHHHHHHH T ss_conf 985999953578997100138899998567743899875672342688755575168989966765-----426999999 Q ss_pred HHHHCCCCCC--EEEEECCCCCC--CCCCHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 6752137775--89974556444--2100000002234026742144311345666777640012211445544 Q gi|254780831|r 195 LHNVVWGQLD--FLLIDMPPGTG--DAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIEN 264 (341) Q Consensus 195 l~~~~w~~~D--~liiD~ppG~g--d~~lsl~~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~N 264 (341) T Consensus 140 i~~lr-~~yd~~~VIiDtPPvl~~~Da-~~la~--~~D~vllVvr~~~t~~~~v~~a~~~L~--~~~vlG~VlN 207 (207) T TIGR03018 140 LHELA-RRYPDRIIIIDTPPLLVFSEA-RALAR--LVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207) T ss_pred HHHHH-HHCCCCEEEEECCCCCCCHHH-HHHHH--HCCEEEEEEECCCCCHHHHHHHHHHHC--CCCEEEEEEC T ss_conf 99999-737965799838962232369-99999--689699999799878999999999866--8980699969 |
Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins. |
| >pfam09140 MipZ ATPase MipZ | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-20 Score=157.50 Aligned_cols=130 Identities=22% Similarity=0.293 Sum_probs=77.7 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCC-CCCCCC-CEEECCCCCC Q ss_conf 20102446665425789999898723577506988224678765310002456311233445-766322-3032233343 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFL-KPKENY-GIKIMSMASL 173 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i-~p~~~~-gi~~~s~g~l 173 (341) T Consensus 1 hIIaVaNqKGGvGKTTtavnLA~aLA~~G~rVllIDlDpqq~slt~~l~nr--~~~~~~~~~~l~~P~~~~l~~~~-~~~ 77 (261) T pfam09140 1 HVIVVGNEKGGSGKSTTAVHVAVALLYLGARVATIDLDLRQRTLTRYIENR--AATAERTGLDLPVPKHLCLPDDV-SEV 77 (261) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH--HHHHHHCCCCCCCCCCCCCCHHH-HHH T ss_conf 979997178987299999999999998899789997999998512344303--55655138653466534455067-776 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEECCCC Q ss_conf 55221000134202478999867521377758997455644421000000022340267421443 Q gi|254780831|r 174 VDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVSTPQD 238 (341) Q Consensus 174 ~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVttP~~ 238 (341) T Consensus 78 ~~~~~~~-------~~~L~~al~~l~-~~yDfIlIDcPPsl~--~Lt~nAl~aAD~vIiPlq~sf 132 (261) T pfam09140 78 FDGESAD-------DARLEEAVADLE-QDADFIVIDTPGSDS--PLSRLAHSRADTLVTPLNDSF 132 (261) T ss_pred HHHHHHH-------HHHHHHHHHHHH-CCCCEEEEECCCCCC--HHHHHHHHHHCEEEECCCHHH T ss_conf 1345578-------999999999987-579999996998573--999999998398763244015 |
MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation. |
| >cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=117.62 Aligned_cols=115 Identities=25% Similarity=0.319 Sum_probs=71.2 Q ss_pred EECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC Q ss_conf 10244666542578999989872357750698822467876531000245631123344576632230322333435522 Q gi|254780831|r 98 VAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMSMASLVDEN 177 (341) Q Consensus 98 iav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s~g~l~~~~ 177 (341) T Consensus 2 ia~-~GKGGvGKtt~~~~la~~l~~~g~~vl~iD~Dp--~dlpe~~~~~~--------------~~~~~l~~lg~~~~~g 64 (116) T cd02034 2 IAI-TGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEV--------------GEIKLLLVMGMGRPGG 64 (116) T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCC--CCCHHHHCEEC--------------CCCCEEEEEECCCCCC T ss_conf 789-889977499999999999997899699998989--71235542331--------------7870799997343589 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEEEE Q ss_conf 100013420247899986752137775899745564442100000002234026742 Q gi|254780831|r 178 VAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHLTIAQKIPLSGVVIVS 234 (341) Q Consensus 178 ~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~lsl~~~~~~~~~iiVt 234 (341) T Consensus 65 ~GC~---C~~n~ll~~~l~~l~~~~~~~VvvD~eAGi--EHl~Rg~~~~vD~livVs 116 (116) T cd02034 65 EGCY---CPENALLNALLRHLVLTRDEQVVVDTEAGL--EHLGRGTAEGVDLLVVVN 116 (116) T ss_pred CCEE---CCHHHHHHHHHHHHCCCCCCEEEEECCCCH--HHHHCCHHHCCCEEEEEC T ss_conf 9408---825789999999970679989999678548--777300664399999969 |
CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function. |
| >COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.043 Score=33.93 Aligned_cols=112 Identities=21% Similarity=0.320 Sum_probs=55.7 Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCC----C------CEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC Q ss_conf 542010244666542578999989872357----7------506988224678765310002456311233445766322 Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNK----G------KNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENY 163 (341) Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~----G------~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~ 163 (341) T Consensus 87 r~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~-----~v~a~mgLsPadvr 161 (402) T COG3598 87 RKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLE-----PVRARMGLSPADVR 161 (402) T ss_pred HCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHHHHHHH-----HHHHHCCCCHHHHH T ss_conf 5170589844886237689999999998647774533558880799982268688999999-----99987099857632 Q ss_pred CEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCC--CCCC Q ss_conf 3032233343552210001342024789998675213777589974556--4442 Q gi|254780831|r 164 GIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPP--GTGD 216 (341) Q Consensus 164 gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~pp--G~gd 216 (341) T Consensus 162 n~dltd~~Gaa~~~d~------l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~ 210 (402) T COG3598 162 NMDLTDVSGAADESDV------LSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGK 210 (402) T ss_pred HEECCCCCCCCCCCCC------CCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCC T ss_conf 2000024567872001------058999999999987478749973445422774 |
|
| >pfam06418 CTP_synth_N CTP synthase N-terminus | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.99 Score=24.86 Aligned_cols=107 Identities=19% Similarity=0.350 Sum_probs=60.7 Q ss_pred CEECCCC-CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECC------ Q ss_conf 0102446-665425789999898723577506988224678765310002456311233445766322303223------ Q gi|254780831|r 97 FVAVASG-KGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGKVEISDKKFLKPKENYGIKIMS------ 169 (341) Q Consensus 97 iiav~Sg-KGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~~~~~~~~~i~p~~~~gi~~~s------ 169 (341) T Consensus 3 yi~vtGGV~SglGKGi~~aSig~ll~~~g~~v~~~K~DpYl-------NvD~-------Gtm~P~eHGEVfV~~DG~EtD 68 (275) T pfam06418 3 YIFVTGGVVSSLGKGITAASLGRLLKSRGLKVTIQKIDPYL-------NVDP-------GTMSPYQHGEVFVTDDGAETD 68 (275) T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCE-------ECCC-------CCCCCCCCCCEEECCCCCCCC T ss_conf 99995985025631899999999999679636787415631-------2388-------877833156078737874014 Q ss_pred ---------------------CCC----CCCCCCCCCCCC------CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC Q ss_conf ---------------------334----355221000134------202478999867521377758997455644421 Q gi|254780831|r 170 ---------------------MAS----LVDENVAMIWRG------PMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDA 217 (341) Q Consensus 170 ---------------------~g~----l~~~~~~~~~rg------~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~ 217 (341) T Consensus 69 lDlG~YERFl~~~l~~~~niTtGkiy~~Vi~kER~G~YLGkTVQvIPHiTdeIk~~I~~~a~~~~Di~ivEiGGTVGDI 147 (275) T pfam06418 69 LDLGHYERFLDINLTKDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAAKGADVVIVEIGGTVGDI 147 (275) T ss_pred CCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCEEECC T ss_conf 7675234314777566666340188999998875567589715877885699999999855678978999757601001 |
This family consists of the N-terminal region of the CTP synthase protein (EC:6.3.4.2). This family is found in conjunction with pfam00117 located in the C-terminal region of the protein. CTP synthase catalyses the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position. |
| >TIGR02945 SUF_assoc FeS assembly SUF system protein; InterPro: IPR014291 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-18 Score=141.39 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=79.3 Q ss_pred HHHHHHHHHCCCCCCCCCEEECCCEEEEEEE-CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC Q ss_conf 9999987203384797643635876556988-998999999668784789999999999986067634235503222343 Q gi|254780831|r 7 NQIVDSLKVLSIPGEKNNIVEMQRLSEIFIV-HNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNP 85 (341) Q Consensus 7 ~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~-~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~ 85 (341) T Consensus 1 ~~~i~alktVYDPEIPvnIYeLGLIY~i~i~Dd~~V~I~MTLTaPgCPvAgemP~~V~~aV~~v~GV~~v~VelvwdPPW 80 (96) T TIGR02945 1 EEVIEALKTVYDPEIPVNIYELGLIYKIEISDDRHVHIDMTLTAPGCPVAGEMPGWVEDAVGQVPGVSSVEVELVWDPPW 80 (96) T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC T ss_conf 92455420268998876610358675887658986788775178568422452268899733388985025776767866 Q ss_pred CCCCC Q ss_conf 33222 Q gi|254780831|r 86 PQQRN 90 (341) Q Consensus 86 ~~~~~ 90 (341) T Consensus 81 ~~~RM 85 (96) T TIGR02945 81 DMDRM 85 (96) T ss_pred CCCCC T ss_conf 92336 |
These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] . FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins , . It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly . The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA . SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA , acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins . Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen . This entry is a subset of the larger DUF59 family. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here are all found as part of the FeS assembly SUF system locus, in a subset of SUF-positive proteobacteria. . |
| >TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=130.36 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=81.0 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEE-----CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 20289999987203384797643635876556988-----9989999996687847899999999999860676342355 Q gi|254780831|r 3 QILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIV-----HNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVV 77 (341) Q Consensus 3 ~it~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~-----~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V 77 (341) T Consensus 72 ~~~E~~vweaLk~V~DPEIpVnIVdLGLIY~v~i~~~~~~~~~V~I~MTLTapgCpmg~~i~~dv~~~v~~v~~v~~v~V 151 (174) T TIGR03406 72 EDNEDQVWEQLRTVYDPEIPVNIVDLGLVYGCRVEKLGEGQFRVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEV 151 (174) T ss_pred CHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE T ss_conf 42099999998415598887544863025799987647889779999960479998317999999999977999664999 Q ss_pred ECCCCCCCCCCC Q ss_conf 032223433322 Q gi|254780831|r 78 TLTENKNPPQQR 89 (341) Q Consensus 78 ~lt~~~~~~~~~ 89 (341) T Consensus 152 elV~dPpW~~dm 163 (174) T TIGR03406 152 ELVFDPPWSREM 163 (174) T ss_pred EEEECCCCCHHH T ss_conf 999889989334 |
The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways. |
| >pfam01883 DUF59 Domain of unknown function DUF59 | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.9e-16 Score=124.82 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=71.8 Q ss_pred HHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEE-CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEC Q ss_conf 289999987203384797643635876556988-998999999668784789999999999986067634235503 Q gi|254780831|r 5 LKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIV-HNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTL 79 (341) Q Consensus 5 t~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~-~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~l 79 (341) T Consensus 1 l~e~I~~aL~~V~DPEl~~~Iv~LGlI~~i~v~~~g~v~I~~~lT~~~CP~~~~i~~~i~~~l~~v~gv~~V~V~l 76 (76) T pfam01883 1 LKEAILEALKTVIDPELPVDIVDLGLVYEVDIDDDGNVKVKMTLTTPGCPLADLIALDVREALLELPGVEDVEVEL 76 (76) T ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 9789999982778999997800245368999857984999999589999837899999999998399940789979 |
This family includes prokaryotic proteins of unknown function. The family also includes PhaH from Pseudomonas putida. PhaH forms a complex with PhaF, PhaG, and PhaI, which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid. So members of this family may all be components of ring hydroxylating complexes. |
| >COG2151 PaaD Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-15 Score=122.65 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=83.7 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEEC--CEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEC Q ss_conf 6202899999872033847976436358765569889--98999999668784789999999999986067634235503 Q gi|254780831|r 2 NQILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIVH--NTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTL 79 (341) Q Consensus 2 s~it~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~~--~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~l 79 (341) T Consensus 10 ~~~~~~~i~~aL~~V~DPEi~idIvdLGLVy~v~i~~~~~~v~v~mtlT~~gCP~~~~i~~~v~~al~~~~~v~~v~V~l 89 (111) T COG2151 10 IKVTLEDILEALKTVIDPEIGIDIVDLGLVYEVDIDDVDGLVKVKMTLTSPGCPLAEVIADQVEAALEEIPGVEDVEVEL 89 (111) T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE T ss_conf 36669999998534779666603576310799997267746999995178888820788999999998468813079999 Q ss_pred CCCCCCCCCCCCCC Q ss_conf 22234333222346 Q gi|254780831|r 80 TENKNPPQQRNNLN 93 (341) Q Consensus 80 t~~~~~~~~~~~~~ 93 (341) T Consensus 90 ~~~p~Wt~~~ms~e 103 (111) T COG2151 90 TLSPPWTPDRMSEE 103 (111) T ss_pred EEECCCCHHHCCHH T ss_conf 97079665543898 |
|
| >TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit; InterPro: IPR011883 Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation , | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.1e-11 Score=92.44 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=69.7 Q ss_pred CCCCCCCC-CEEECCCEEEEEEECCEEEEE-EEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 33847976-436358765569889989999-99668784789999999999986067634235503222343332223 Q gi|254780831|r 16 LSIPGEKN-NIVEMQRLSEIFIVHNTVYLS-ITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVTLTENKNPPQQRNN 91 (341) Q Consensus 16 V~DPel~~-dIv~lGlI~~I~I~~~~V~i~-l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~lt~~~~~~~~~~~ 91 (341) T Consensus 1 VPDPEiPv~s~~DLGmVR~V~v~g~G~~v~s~tPTySGCPA~~~i~~~i~~A~~~~GW~~~VeV~~~L~P~WTTdwIT 78 (152) T TIGR02159 1 VPDPEIPVVSVTDLGMVREVEVDGEGVVVKSFTPTYSGCPALEVIRQDIRDALRALGWVEEVEVKTSLDPAWTTDWIT 78 (152) T ss_pred CCCCCCCEEEEECCCEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCC T ss_conf 988887702211065343578647947988874587772368999999999997478975115887718987840027 |
Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA . . |
| >KOG3381 consensus | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.13 Score=30.78 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=62.3 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEECCCEEEEEEE--C-------CEEEEEEEECCCCHHHHHHHHHHHHHHH-HCCCCCC Q ss_conf 0289999987203384797643635876556988--9-------9899999966878478999999999998-6067634 Q gi|254780831|r 4 ILKNQIVDSLKVLSIPGEKNNIVEMQRLSEIFIV--H-------NTVYLSITVPHTIAHQLQSLRSNAQQII-QNIPTVK 73 (341) Q Consensus 4 it~~~I~e~L~~V~DPel~~dIv~lGlI~~I~I~--~-------~~V~i~l~lt~~~cp~~~~l~~~i~~~l-~~i~gv~ 73 (341) T Consensus 34 ~~~~~~~dlir~I~DPEhP~TLeqL~VV~ee~v~V~d~~~~~~~s~V~i~ftPTipHCSmaTlIGLcIrVkl~RsLp~rf 113 (161) T KOG3381 34 EDAEEIFDLIRDIRDPEHPLTLEQLNVVSEEGVEVDDPNVGDEESYVRITFTPTIPHCSMATLIGLCIRVKLLRSLPPRF 113 (161) T ss_pred HHHHHHHHHHHCCCCCCCCCCHHHCCCEEECCEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHEEEEEEEECCCCCE T ss_conf 36789999986168988886588706242205676457778851389999536887522776642202665530488742 Q ss_pred CEEEECCCCC Q ss_conf 2355032223 Q gi|254780831|r 74 NAVVTLTENK 83 (341) Q Consensus 74 ~v~V~lt~~~ 83 (341) T Consensus 114 kvdV~I~~Gt 123 (161) T KOG3381 114 KVDVYIKPGT 123 (161) T ss_pred EEEEEECCCC T ss_conf 6899975787 |
|
| >COG5133 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.41 Score=27.43 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=33.6 Q ss_pred HHHHHHHHHHHHCCCCCCCCCEEECCCEE--EEEEECC-------EEEEEEEECCCCHHHHHHHHHHHHHHHH-CCCCCC Q ss_conf 02899999872033847976436358765--5698899-------8999999668784789999999999986-067634 Q gi|254780831|r 4 ILKNQIVDSLKVLSIPGEKNNIVEMQRLS--EIFIVHN-------TVYLSITVPHTIAHQLQSLRSNAQQIIQ-NIPTVK 73 (341) Q Consensus 4 it~~~I~e~L~~V~DPel~~dIv~lGlI~--~I~I~~~-------~V~i~l~lt~~~cp~~~~l~~~i~~~l~-~i~gv~ 73 (341) T Consensus 54 id~qeiydLia~I~DPEHPltL~QLsVV~lEdi~v~D~~~~n~i~~v~v~itPTIpHCSmatlIGLcIrvrleR~lpprF 133 (181) T COG5133 54 IDQQEIYDLIADIRDPEHPLTLEQLSVVSLEDISVPDGIAPNVIRCVKVVITPTIPHCSMATLIGLCIRVRLERHLPPRF 133 (181) T ss_pred CCHHHHHHHHHHCCCCCCCCCHHHCCEEEECCCCCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHEEEEEHHCCCCCE T ss_conf 68899999998607988874076601352025534678887704789999635887206887764320332000379841 Q ss_pred CEEEE Q ss_conf 23550 Q gi|254780831|r 74 NAVVT 78 (341) Q Consensus 74 ~v~V~ 78 (341) T Consensus 134 ~v~v~ 138 (181) T COG5133 134 HVQVH 138 (181) T ss_pred EEEEE T ss_conf 68999 |
|
| >TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.8e-07 Score=66.93 Aligned_cols=237 Identities=17% Similarity=0.293 Sum_probs=119.4 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEC----CCEEEEEEE--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCE- Q ss_conf 20289999987203384797643635----876556988--99899999966878478999999999998606763423- Q gi|254780831|r 3 QILKNQIVDSLKVLSIPGEKNNIVEM----QRLSEIFIV--HNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNA- 75 (341) Q Consensus 3 ~it~~~I~e~L~~V~DPel~~dIv~l----GlI~~I~I~--~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v- 75 (341) T Consensus 20 ~itE~~i~~al~EiR~ALLeADV-nl~VvK~Fi~~V~ekA~G~eV~-------~~~~P~Qq~iKIV~eEL~~~LG~~~~E 91 (439) T TIGR00959 20 TITEKNIKEALREIRLALLEADV-NLQVVKDFIKKVKEKALGQEVL-------KSLSPGQQFIKIVHEELVAILGGKGRE 91 (439) T ss_pred CCCHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHH-------CCCCCCHHEEHHHHHHHHHHCCCCCCC T ss_conf 75889999999999998877315-7689999999888875225441-------267802012022468999851666732 Q ss_pred EEECCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHH--HCCCCCEEEEEECCCCCCC-CCCEECCCCCCCCC Q ss_conf 55032223433322234654201024466654257899998987--2357750698822467876-53100024563112 Q gi|254780831|r 76 VVTLTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACA--LKNKGKNVAILDADVYGPS-IPKLLKISGKVEIS 152 (341) Q Consensus 76 ~V~lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~a--la~~G~~V~liDaDi~~ps-~~~~lg~~~~~~~~ 152 (341) T Consensus 92 ~~~L~~~~~~P---------~vil-mvGLQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~~QL~~Lg~Q~--- 158 (439) T TIGR00959 92 SAELKLAEKRP---------TVIL-MVGLQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAIEQLKVLGEQV--- 158 (439) T ss_pred CCCCCCCCCCC---------EEEE-EECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHHHHHHHHHHHC--- T ss_conf 56755567868---------3899-7313788578899999999999863897034032103478999999976752--- Q ss_pred CCCCCCCCCCCCEEECC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC---------HHH Q ss_conf 33445766322303223-33435522100013420247899986752137775899745564442100---------000 Q gi|254780831|r 153 DKKFLKPKENYGIKIMS-MASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTGDAHL---------TIA 222 (341) Q Consensus 153 ~~~~i~p~~~~gi~~~s-~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~gd~~l---------sl~ 222 (341) T Consensus 159 -----------gVpvf~h~~~~~~p~~Pv~----ia~~Al~~Ak~----~~~D~vI~DT---AGRL~ID~~LM~EL~~iK 216 (439) T TIGR00959 159 -----------GVPVFAHLGKGQSPDDPVE----IARQALEEAKE----NGFDVVIVDT---AGRLQIDEELMEELAEIK 216 (439) T ss_pred -----------CCCCCCCCCCCCCCCCHHH----HHHHHHHHHHH----CCCCEEEEEC---CCCHHHHHHHHHHHHHHH T ss_conf -----------8871100478889887789----99999999997----4897899726---751255599999999998 Q ss_pred HCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCH-HHHHHHHHCCCE Q ss_conf 00223402674214431134566677764001221144554420245877886651247765-899999847978 Q gi|254780831|r 223 QKIPLSGVVIVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGNGG-ARFEAEKIGIPF 296 (341) Q Consensus 223 ~~~~~~~~iiVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~~~-~~~~a~~~~i~~ 296 (341) T Consensus 217 ~~~nP~EiLlVv--DaM~GQdAvn~A~~F~e-~lgltG~vltK--~D----GD-----aRGGAALS~~~~tg~PI 277 (439) T TIGR00959 217 EILNPDEILLVV--DAMTGQDAVNTAKTFNE-RLGLTGVVLTK--LD----GD-----ARGGAALSVRSVTGKPI 277 (439) T ss_pred HHHCCCEEEECC--HHCCHHHHHHHHHHHCC-CCCCCEEEEEC--CC----CC-----CHHHHHHHHHHHHCCCE T ss_conf 886887054122--01021699999986366-00135478854--75----66-----05789999999968961 |
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle. |
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=57.62 Aligned_cols=237 Identities=20% Similarity=0.290 Sum_probs=118.5 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEECC----CEEEEEEECCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE Q ss_conf 202899999872033847976436358----7655698899899999966878478999999999998606763423550 Q gi|254780831|r 3 QILKNQIVDSLKVLSIPGEKNNIVEMQ----RLSEIFIVHNTVYLSITVPHTIAHQLQSLRSNAQQIIQNIPTVKNAVVT 78 (341) Q Consensus 3 ~it~~~I~e~L~~V~DPel~~dIv~lG----lI~~I~I~~~~V~i~l~lt~~~cp~~~~l~~~i~~~l~~i~gv~~v~V~ 78 (341) T Consensus 21 ~i~E~~i~e~~reir~ALLeADV-nl~vVk~fi~~ike--ra~--g~ev-~~~l~p~q~~iKiV~eELv~llG~~~~~l~ 94 (451) T COG0541 21 RITEKDVKEALREIRRALLEADV-NLKVVKDFIKRIKE--RAL--GEEV-PKGLTPGQQFIKIVYEELVKLLGGENSELN 94 (451) T ss_pred CCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH--HHC--CCCC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 67799999999999999996444-68999999999999--861--4667-888998999999999999998488876650 Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCEECCCCCCCCCCCCCC Q ss_conf 3222343332223465420102446665425789999898723577506988224678765-310002456311233445 Q gi|254780831|r 79 LTENKNPPQQRNNLNVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI-PKLLKISGKVEISDKKFL 157 (341) Q Consensus 79 lt~~~~~~~~~~~~~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~-~~~lg~~~~~~~~~~~~i 157 (341) T Consensus 95 l~--~~~P---------~vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q--------- 153 (451) T COG0541 95 LA--KKPP---------TVILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQ--------- 153 (451) T ss_pred CC--CCCC---------EEEEEE-ECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH--------- T ss_conf 37--8998---------589998-15679748689999999997499458985056786899999999986--------- Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC-CCCC-----HHHHCCCCCCEE Q ss_conf 7663223032233343552210001342024789998675213777589974556444-2100-----000002234026 Q gi|254780831|r 158 KPKENYGIKIMSMASLVDENVAMIWRGPMVQSAIMHMLHNVVWGQLDFLLIDMPPGTG-DAHL-----TIAQKIPLSGVV 231 (341) Q Consensus 158 ~p~~~~gi~~~s~g~l~~~~~~~~~rg~~~~~~l~~~l~~~~w~~~D~liiD~ppG~g-d~~l-----sl~~~~~~~~~i 231 (341) T Consensus 154 -----~~v~~f~~---~~~~~Pv~----Iak~al~~ak~~----~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~l 217 (451) T COG0541 154 -----VGVPFFGS---GTEKDPVE----IAKAALEKAKEE----GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETL 217 (451) T ss_pred -----CCCCEECC---CCCCCHHH----HHHHHHHHHHHC----CCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEE T ss_conf -----09853167---78899799----999999999974----998899968873303099999999998553987489 Q ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCEEECCCC-CHHHHHHHHHCCCE Q ss_conf 742144311345666777640012211445544202458778866512477-65899999847978 Q gi|254780831|r 232 IVSTPQDLALIDVKRAISMYQKMNIPIIGMIENMSYFLASDTGKKYDLFGN-GGARFEAEKIGIPF 296 (341) Q Consensus 232 iVttP~~~s~~da~r~~~~~~~~~~~i~GiV~NMs~~~~~~~~~~~~~fg~-~~~~~~a~~~~i~~ 296 (341) T Consensus 218 lVvD--am~GQdA~~~A~aF~e-~l~itGvIlTK------lDGd-----aRGGaALS~~~~tg~PI 269 (451) T COG0541 218 LVVD--AMIGQDAVNTAKAFNE-ALGITGVILTK------LDGD-----ARGGAALSARAITGKPI 269 (451) T ss_pred EEEE--CCCCHHHHHHHHHHHH-HCCCCEEEEEC------CCCC-----CCCHHHHHHHHHHCCCE T ss_conf 9876--4445678999999866-26986499971------4678-----76228885699878985 |
|
| >PRK13505 formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.6e-06 Score=58.58 Aligned_cols=49 Identities=31% Similarity=0.465 Sum_probs=41.3 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC Q ss_conf 0102446665425789999898723577506988224678765310002456 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK 148 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~ 148 (341) T Consensus 59 VTaitPTP~GEGKTTttIGL~~aL~~lgk~~~~~---lRePSlGP~FGiKGG 107 (556) T PRK13505 59 VTAINPTPAGEGKTTVTVGLGDALNKIGKKTVIA---LREPSLGPVFGIKGG 107 (556) T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE---EECCCCCCCCCCCCC T ss_conf 9845888888886301798999998718743799---735887873166556 |
|
| >pfam01268 FTHFS Formate--tetrahydrofolate ligase | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.4e-06 Score=58.67 Aligned_cols=49 Identities=29% Similarity=0.450 Sum_probs=40.7 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCC Q ss_conf 0102446665425789999898723577506988224678765310002456 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISGK 148 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~~ 148 (341) T Consensus 59 VTaitPTP~GEGKTTttIGL~~aL~~lgk~~~~~---lRePSlGPvFGiKGG 107 (555) T pfam01268 59 VTAITPTPAGEGKTTTTIGLGQALNRLGKKAIAA---LREPSLGPVFGIKGG 107 (555) T ss_pred EEECCCCCCCCCCCEEHHHHHHHHHHHCCCEEEE---EECCCCCCCCCCCCC T ss_conf 9845788888886302365999998628743689---725877874465666 |
|
| >PRK13507 formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.1e-05 Score=56.01 Aligned_cols=48 Identities=31% Similarity=0.396 Sum_probs=40.6 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCC Q ss_conf 010244666542578999989872357750698822467876531000245 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISG 147 (341) Q Consensus 97 iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~~~~lg~~~ 147 (341) T Consensus 68 VTaitPTP~GEGKTTttIGL~~aL~~lgkk~~~~---lRePSlGPvFGiKG 115 (587) T PRK13507 68 VTAITPTPLGEGKSTTTMGLVQGLGKRGKKVGGA---IRQPSGGPTMNIKG 115 (587) T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE---EECCCCCCCCCCCC T ss_conf 9846888888986210562999998608825899---72688788647655 |
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.5e-05 Score=52.31 Aligned_cols=43 Identities=30% Similarity=0.521 Sum_probs=38.2 Q ss_pred CCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC Q ss_conf 20102446665425789999898723577506988224678765 Q gi|254780831|r 96 KFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI 139 (341) Q Consensus 96 ~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~ 139 (341) T Consensus 98 ~Vim~v-GlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA 140 (433) T PRK00771 98 QTILLV-GLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGA 140 (433) T ss_pred EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH T ss_conf 589997-3788978999999999999779946785067883689 |
|
| >PRK13886 conjugal transfer protein TraL; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=1e-05 Score=58.01 Aligned_cols=44 Identities=36% Similarity=0.465 Sum_probs=38.0 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC Q ss_conf 42010244666542578999989872357750698822467876 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS 138 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps 138 (341) T Consensus 2 a~IH~vlqgKGGVGKS~va~~LaQY~~~~~~~~~~iDTDpvN~t 45 (241) T PRK13886 2 AKIHMVLQGKGGVGKSMIAATIAQYKAGKGQKPLCIDTDPVNAT 45 (241) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCC T ss_conf 75999855888630999999999999835999855608999705 |
|
| >PRK09435 arginine/ornithine transport system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00031 Score=48.21 Aligned_cols=51 Identities=27% Similarity=0.365 Sum_probs=40.7 Q ss_pred CCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC-CCCCEEC Q ss_conf 654201024466654257899998987235775069882246787-6531000 Q gi|254780831|r 93 NVKKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP-SIPKLLK 144 (341) Q Consensus 93 ~~~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p-s~~~~lg 144 (341) T Consensus 47 g~a~~iGiT-G~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLG 98 (325) T PRK09435 47 GNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILG 98 (325) T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHH T ss_conf 982599742-7999868899999999999679858999978999988861010 |
|
| >COG1341 Predicted GTPase or GTP-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00035 Score=47.84 Aligned_cols=43 Identities=40% Similarity=0.450 Sum_probs=35.5 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC Q ss_conf 42010244666542578999989872357750698822467876 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPS 138 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps 138 (341) T Consensus 73 ~~~vmvv-G~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~e 115 (398) T COG1341 73 VGVVMVV-GPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSE 115 (398) T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCC T ss_conf 7389998-986767889999999887644741899968999766 |
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=97.57 E-value=9.6e-05 Score=51.60 Aligned_cols=42 Identities=33% Similarity=0.538 Sum_probs=34.9 Q ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEECCCCC Q ss_conf 542010244666542578999989872357--7506988224678 Q gi|254780831|r 94 VKKFVAVASGKGGVGKSTTVVNIACALKNK--GKNVAILDADVYG 136 (341) Q Consensus 94 ~~~iiav~SgKGGVGKSt~s~nLa~ala~~--G~~V~liDaDi~~ 136 (341) T Consensus 193 ~~~vi~lv-GPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyR 236 (282) T TIGR03499 193 QGGVIALV-GPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYR 236 (282) T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 67279997-788875788999999999997389967999807776 |
|
| >KOG0780 consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00052 Score=46.73 Aligned_cols=44 Identities=32% Similarity=0.468 Sum_probs=38.7 Q ss_pred CCCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC Q ss_conf 420102446665425789999898723577506988224678765 Q gi|254780831|r 95 KKFVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSI 139 (341) Q Consensus 95 ~~iiav~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ps~ 139 (341) T Consensus 101 psVimfV-GLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483) T KOG0780 101 PSVIMFV-GLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483) T ss_pred CCEEEEE-ECCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCCCH T ss_conf 7089998-3057886300899999998468724577602245306 |
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0011 Score=44.63 Aligned_cols=35 Identities=34% Similarity=0.433 Sum_probs=31.8 Q ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC Q ss_conf 44666542578999989872357750698822467 Q gi|254780831|r 101 ASGKGGVGKSTTVVNIACALKNKGKNVAILDADVY 135 (341) Q Consensus 101 ~SgKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~ 135 (341) T Consensus 7 ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA 41 (253) T PRK13768 7 FLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPA 41 (253) T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC T ss_conf 98999998899999999999976997599978986 |
|
| >pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0024 Score=42.34 Aligned_cols=34 Identities=29% Similarity=0.439 Sum_probs=30.8 Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCC Q ss_conf 6665425789999898723577506988224678 Q gi|254780831|r 103 GKGGVGKSTTVVNIACALKNKGKNVAILDADVYG 136 (341) Q Consensus 103 gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~ 136 (341) T Consensus 3 GpaGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~ 36 (234) T pfam03029 3 GGAGSGKTTFVGALSEILPLRGRSVYVVNLDPAA 36 (234) T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 9898988999999999999779975999789866 |
Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity. |
| >PRK00313 lpxK tetraacyldisaccharide 4'-kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.017 Score=36.54 Aligned_cols=41 Identities=22% Similarity=0.489 Sum_probs=35.3 Q ss_pred CCEECCC-CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC Q ss_conf 2010244-66654257899998987235775069882246787 Q gi|254780831|r 96 KFVAVAS-GKGGVGKSTTVVNIACALKNKGKNVAILDADVYGP 137 (341) Q Consensus 96 ~iiav~S-gKGGVGKSt~s~nLa~ala~~G~~V~liDaDi~~p 137 (341) T Consensus 52 PVI~VGNitvGGTGKTP~v~~La~~L~~~G~~~~IiSRG-Yg~ 93 (332) T PRK00313 52 PVIVVGNITVGGTGKTPLILWLIEHCRRRGLRVGVVSRG-YGA 93 (332) T ss_pred CEEEECCEEECCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCC T ss_conf 899987873588777799999999999779965898646-567 |
|
| >PRK13506 formate--tetrahydrofolate ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0074 Score=39.03 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=39.9 Q ss_pred CEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCC Q ss_conf 010244666542578999989872357750698822467876531000245 Q gi|254780831|r 97 FVAVASGKGGVGKSTTVVNIACALKNKGKNVAILDADVYGPSIPKLLKISG 147 (3 |